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  • Analytical Chemistry and Spectroscopy  (1,354)
  • Inorganic Chemistry  (693)
  • 1995-1999
  • 1990-1994  (2,047)
  • 1950-1954
  • 1990  (2,047)
Collection
Publisher
Years
  • 1995-1999
  • 1990-1994  (2,047)
  • 1950-1954
Year
  • 1
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990), S. 331-334 
    ISSN: 0886-9383
    Keywords: Power method ; NIPALS algorithm ; Singular value decomposition ; Experimental design ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In a recent short communication, Miyashita et al. have commented on the weakness of the NIPALS algorithm (equivalently the power method) for calculating the eigenvalues out of order. They offer a diagnostic to ascertain when this may have occurred and suggested a modification to the NIPALS algorithm to avoid this situation. Further comments regarding the use of the power method and Miyashita's presentation of its weakness are warranted. The general inadequacies of methods for decomposing a matrix with degenerate eigenvalues and their relationship to the orthogonal design of experiments are discussed.
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990), S. i 
    ISSN: 0886-9383
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 3
    Electronic Resource
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    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990), S. 337-354 
    ISSN: 0886-9383
    Keywords: Chemometrics ; Chemometrics Society ; History of chemometrics ; Pioneers of modern chemometrics ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This is a first foray into the historical start and early years of chemometrics from about 1972 onwards. We have gathered interviews with three originators (Kowalski, Wold and Massart) as well as with a selected group of six other well-known chemometricians who gradually became active in the 1970s (Christie, Clementi, Hopke, Martens, Brown and Deming). The interviews include amongst a host of subjective recollections a succinct record of the key historical literature as highlighted by the interviewees' own rankings of ‘earliest’ and ‘best’.A discussion of the most general commonalities in these interviews together with other historical material is presented in the second part of the paper.
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990), S. 355-360 
    ISSN: 0886-9383
    Keywords: Pattern recognition ; U.K. chemometrics usage ; Quantitative structure-activity relationships ; Artificial intelligence ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A survey of members of the U.K. QSAR Discussion Group has been made to determine the extent of use and development of chemometric and artificial intelligence (AI) methods in the analysis of multivariate quantitative structure-activity relationship (QSAR) data in the U.K. Chemometric methods were found to be well established in both industrial and educational establishments and there was significant method development occurring. AI methods were not employed to any great extent and the general level of interest in these techniques was low compared to chemometric methods. A requirement for more education in multivariate statistical methods and regression methods was indicated. A need for a user-friendly, comprehensive, commercially available multivariate statistical package containing multivariate stability testing and regression diagnostic methods was identified.
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  • 5
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    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990), S. 361-377 
    ISSN: 0886-9383
    Keywords: Abstract factor analysis ; Exploratory data analysis ; Principal components ; Simulated equilibria ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract factor analyses were performed on databases consisting of simulated samples from aqueous equilbria. The program COMPLEX was used to generate equilibrium species in a system of three reactant metals and five reactant bases. Reactant concentrations and pH were drawn from random-normal distributions so that sample data vectors comprised a multivariate log-normal distribution of equilibrium concentrations. In addition, sample groups were created containing different distributions for pH and reactant concentrations.Equilibrium species were shown to contain variance contributed by change in pH among samples as well as change in reactant concentrations. Factor modelling revealed the qualitative relationships among the species and how the relationships change with pH. Factors also revealed those reactants containing variance in the data matrix. In some cases, reactant variance obscured relationships between pH and the equilibrium species.Since factor modelling of a simulated data matrix revealed the expected chemical equilibrium interactions, a potentially powerful tool exists for investigating the effects of outliers and error.
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  • 6
    ISSN: 0886-9383
    Keywords: PCA ; Essential oils ; Mandarine ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Mandarine essential oils are extracted from green unripened fruits as well as from red fruits at ripening, both oils having specific uses as natural additives in the food industry. Two processes of production, pressing and peeling, are currently adopted in their production. Capillary gas chromatography with flame ionization detection has been suggested as a sensitive method for the fractionation of volatile components of the essential oils. Principal component analysis was proposed as an exploratory chemometric method for the differentiation of essential oils from fruits at different degrees of ripening, taking into account the processes of production. Product-moment correlations between variables (concentrations of 17 components) were used as starting matrices and the explained variance was adopted as a criterion for eigenvalue selection. Bi-plots and three-dimensional plots of unrotated principal component scores were systematically used as well as those of orthogonally rotated factor scores. The 17 variables were reduced to four principal components, which explained 87% of the total variance. Projection on the first three eigenvectors of all data as unrotated component scores allowed for a tentative differentiation of 59 oils according to their degree of ripening. The two processes of production were also differentiated in a sample of 55 oils.
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  • 7
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    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990), S. 91-96 
    ISSN: 0886-9383
    Keywords: Sample size ; Monte Carlo ; Multivariate, normal ; Q-Q plots ; Classification ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Because many pattern recognition techniques are predicated on the assumption of mutivariate normal data, Monte Carlo simulation studies were performed to determine the number of samples that are necessary to describe a multivariate normal population adequately. From these studies we have learned that hundreds of samples are required. These results suggest that parametric procedures should only be used to analyze very large data sets.
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  • 8
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    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990) 
    ISSN: 0886-9383
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 9
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    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990), S. i 
    ISSN: 0886-9383
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 10
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    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990), S. i 
    ISSN: 0886-9383
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 11
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    Journal of Chemometrics 4 (1990), S. 97-100 
    ISSN: 0886-9383
    Keywords: Matrix decomposition ; NIPALS ; Principal component ; SIMCA ; PLS ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Non-linear Iterative Partial Least Squares (NIPALS) algorithm is used in principal component analysis to decompose a data matrix into score vectors and eigenvectors (loading vectors) plus a residual matrix. NIPALS starts with some guessed starting vector. The principal components obtained by NIPALS depends on the starting vector; the first principal component could not always be computed. Wold has suggested a starting vector for NIPALS, but we have found that even if this starting vector is used, the first principal component cannot be obtained in all cases. The reason why such a situation occurs is explained by the power method. A simple modification of the original NIPALS procedure to avoid getting smaller eigenvalues is presented.
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  • 12
    ISSN: 0886-9383
    Keywords: Experimental design ; Binding ; Scatchard analysis ; Model ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The design of an experiment for the determination of binding parameters in the association between a ligand and a macromolecule with two groups of non-interacting binding sites is proposed. In the Gauss-Newton non-linear least squares treatment the standard deviation of each parameter is given as the product of two terms: one depending on the experimental error and the other, the diagonal element of the dispersion matrix, depending only on the independent variables of the system. In order to reach an optimal experimental design, these diagonal elements of the information matrix have to be minimized. In our approach this is achieved by searching those values of the independent variable which maximize the determinant of the information matrix. Furthermore, the limits of validity of the model are deduced from an analysis of the diagonal elements of the information matrix obtained under optimal conditions.
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  • 13
    ISSN: 0886-9383
    Keywords: Principal component ; Cross-validation ; Selection of variables ; Residual ; Influential observation ; Procrustes analysis ; Chemometrics ; Wine analysis ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Cross-validatory estimation of the bilinear model based on principal components is reviewed and Krzanowski's modification of Wold's procedure is described. Two different types of residuals useful for checking model adequacy are defined and indices measuring the influence of each observed unit on the estimates of the parameters are discussed. A method for the selection of variables derived from Procrustes analysis is described. Results arising from the study of two sets of enological data are given.
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  • 14
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    Journal of Chemometrics 4 (1990), S. 299-321 
    ISSN: 0886-9383
    Keywords: Quantitative structure-activity relationships (QSARs) ; Free-Wilson ; Fujita-Ban Stepwise principal components regression analysis (SPCRA) ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Free-Wilson paradigm is an established and powerful tool for quantitatively relating activity with chemical structure. Current implementations of the paradigm, however, are flawed both conceptually and in execution. As part of an attempt to more fully realize the promise of the paradigm, it was necessary to examine these limitations in detail.This report introduces a robust, theory-founded Free-Wilson implementation: stepwise principal components regression analysis (SPCRA). SPCRA is computationally superior to previous implementations but does not in itself correct their conceptual flaws.The development of SPCRA did, however, facilitate derivation of a simple and chemically significant interpretation of the Free-Wilson structure-activity model. A number of statistical aspects of this model commonly misused in previous applications are discussed at length. These discussions provide critical background for the development of an alternative implementation of the Free-Wilson paradigm.
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  • 15
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    Journal of Chemometrics 4 (1990), S. 323-330 
    ISSN: 0886-9383
    Keywords: Target factor analysis ; Spectrophotometry ; Amino acids ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The UV spectra of mixture solutions consisting of tyrosine, tryptophane, phenylalanine, cystine, histidine and 3,4-dihydroxyl phenylalanine have been measured. The numbers, identities and concentrations of the amino acids in the mixtures have been determined successfully using target factor analysis. The effects of the wavelength range and the selected sampling interval on the results are discussed. Twenty-five synthetic mixture samples have been analysed successfully. The average recoveries are 98.9 for Tyr, 96.5 for Trp, 105.6 for Phe, 98.1 for Cys, 98.9 for His and 106.4 for Di-phe. The results obtained are in good agreement with those obtained by the Kalman filter method.
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  • 16
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    Journal of Chemometrics 4 (1990), S. 335-335 
    ISSN: 0886-9383
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 17
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    New York, NY : Wiley-Blackwell
    Journal of Chemometrics 4 (1990) 
    ISSN: 0886-9383
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 18
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    Journal of Chemometrics 4 (1990), S. 29-45 
    ISSN: 0886-9383
    Keywords: Tensor ; Superdiagonalization ; GRAM ; Three-way ; Multilinear ; Trilinear ; PARAFAC ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Modern instrumentation in chemistry routinely generates two-dimensional (second-order) arrays of data. Considering that most analyses need to compare several samples, the analyst ends up with a three-dimensional (third-order) array which is difficult to visualize or interpret with the conventional statistical tools.Some of these data arrays follow the so-called trilinear model, \documentclass{article}\pagestyle{empty}\begin{document}$$ {\rm R}_{ijk} = \sum\limits_{r = 1}^N {{\rm X}_{ir} {\rm Y}_{jr} {\rm Z}_{kr} + {\rm Error}_{ijk} } $$\end{document} These trilinear arrays of data are known to have unique factor analysis decompositions which correspond to the true physical factors that form the data, i.e. given the array ∝, a unique solution can be found in many cases for each order X, Y and Z. This is in contrast to the well-known second-order bilinear data factor analysis, where the abstract solutions obtained are not unique and at best cannot be easily compared with the underlying physical factors owing to a rotational ambiguity.Trilinear decompositions have had the disadvantage, however, that a non-linear optimization with many parameters is necessary to reach a least-squares solution. This paper will introduce a method for reducing the problem to a rectangular generalized eigenvalue-eigenvector equation where the eigenvectors are the contravariant form (pseudo-inverse) of the actual factors. It is shown that the method works well when the factors are linearly independent in at least two orders (e.g. Xir and Yjr are full rank matrices).Finally, it is shown how trilinear decompositions relate to multicomponent calibration, curve resolution and chemical analysis.
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  • 19
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    Journal of Chemometrics 4 (1990), S. 47-50 
    ISSN: 0886-9383
    Keywords: Classification ; Pattern recognition ; Preprocessing ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Over the past 15 years the linear learning machine has been applied to a large number of chemical problems. The learning machine approach is conceptually simple and does not require knowledge about the statistical distribution of the data. However, there are problems associated with this approach. One problem which has not been investigated is the influence of mislabeled samples on the positioning of the hyperplane in feature space. If a few samples in a data set are incorrectly tagged prior to training (i.e. the samples are labeled as members of class 2 even though they are actually members of class 1), it is still possible using the linear learning machine to achieve a classification success rate of 100% for the training set. However, unfavorable results will be obtained for the prediction set. The magnitude of this effect and its potential implications regarding the proper use of the linear learning machine are discussed.
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  • 20
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    Journal of Chemometrics 4 (1990), S. 389-412 
    ISSN: 0886-9383
    Keywords: Chemometrics ; Chemometrics Society ; History of chemometrics ; Pioneers of modern chemometrics ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This is a first foray into the historical start and early years of chemometrics from about 1972 onwards. We have gathered interviews with three originators (Kowalski, Wold and Massart) as well as with a selected group of six other well-known chemometricians who gradually became active in the 1970s (Christie, Clementi, Hopke, Martens, Brown and Deming). The interviews include amongst a host of subjective recollections a succinct record of the key historical literature as highlighted by the interviewees' own rankings of ‘earliest’ and ‘best’.A discussion of the most general commonalities in these interviews together with other historical material is presented in the second part of the paper.
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  • 21
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    Journal of Chemometrics 4 (1990), S. 441-441 
    ISSN: 0886-9383
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 22
    ISSN: 0886-9383
    Keywords: Discriminant analysis ; Size-exclusion chromatography ; Wheat proteins ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Continuous digitalized signals such as spectra, electrophoregrams or chromatograms generally have a large number of data points and contain redundant information. It is therefore troublesome performing discriminant analysis without any preliminary selection of variables. A procedure for the application of canonical discriminant analysis (CDA) on this kind of data is studied. CDA can be presented as a succession of two principal component analyses (PCAs). The first is performed directly on the raw data and gives PC scores. The second is applied on the gravity centres of each qualitative group assessed on the normalized PC scores. A stepwise procedure for selection of the relevant PC scores is presented. The method has been tested on an illustrative collection of 165 size-exclusion high-performance (SE-HPLC) chromatograms of proteins of wheat belonging to 55 genotypes and grown in three locations. The discrimination of the growing locations was performed using seven to nine PC scores and gave more than 86% accurate classifications of the samples both in the training sets and the verification sets. The genotypes were also rather well identified, with more than 85% of the samples correctly classified. The studied method gives a way of assessing relevant mathematical distances between digitalized signals according to qualitative knowledge of the samples.
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  • 23
    ISSN: 0886-9383
    Keywords: Principal components ; Multiple and stepwise regression ; Non-parametric density and regression estimation ; Bootstrap inference ; Canonical correlation ; PLS regression ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A statistical study of the dependence between various critical fusion temperatures of a certain kind of coal and its chemical components is carried out. As well as using classical dependence techniques (multiple, stepwise and PLS regression, principal components, canonical correlation, etc.) together with the corresponding inference on the parameters of interest, non-parametric regression and bootstrap inference are also performed.
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  • 24
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    Journal of Chemometrics 4 (1990), S. 241-253 
    ISSN: 0886-9383
    Keywords: Peptide QSAR ; Dedicated principal properties ; Principal component analysis ; Partial least squares projections to latent structures ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Dedicated principal properties (DPPs) are presented. The DPP approach is an iterative process based on PLS wherein principal properties are calibrated on QSARs with improved predictive capabilities as a consequence. The DPP approach is illustrated by two examples. In the first example the z-scales developed for structural description in peptide QSARs are optimized according to the DPP approach. In the second example DDPs based on simulated pentapeptide-like sequences are calculated and evaluated.A comparison is made of the predictive power of peptide QSAR models based on structural description of the peptides with (a) 29 physico-chemical variables with (b) three principal properties (z-scales) and (c) three sets of DPPs. The results show that models based on all 29 variables give better predictions than models based on principal properties. Modelling based on DPPs improves the predictive power to the same level as models based on all 29 variables.
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  • 25
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    Journal of Chemometrics 4 (1990), S. 255-266 
    ISSN: 0886-9383
    Keywords: Similarity measure ; Cluster analysis ; Riemannian space ; Metric tensor ; Curvature ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The results of unsupervised pattern recognition methods are critically dependent on the measure of similarity used for clustering objects. There is little a priori information available on the relative utility of various similarity measures. We introduce here an alternative similarity measure based on the metric tensor measure (MTM). Two standard clustering strategies are tested with the proposed similarity measure: hierarchical clustering and the K-median method. As data we use the ARCH obsidian data, a data set on Hungarian coal, and trace element data on Hungarian paprika. Differences from the Mahalanobis distance measure are described for intraclass relations.
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  • 26
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    Journal of Chemometrics 4 (1990), S. 267-268 
    ISSN: 0886-9383
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 27
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    Journal of Chemometrics 4 (1990), S. 269-269 
    ISSN: 0886-9383
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Chemistry and Pharmacology
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    Journal of Chemometrics 4 (1990) 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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  • 29
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    Journal of Chemometrics 4 (1990), S. i 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Chemistry and Pharmacology
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  • 30
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    Journal of Chemometrics 4 (1990), S. 1-13 
    ISSN: 0886-9383
    Keywords: Factor analysis ; Self-modeling curve resolution ; Spectra isolation ; Target transformation factor analysis ; Iterative target transformation factor analysis ; Evolving factor analysis ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: One of the major applications of factor analysis in the chemical literature, self-modeling curve resolution (SMCR), is covered in this review, including a historical account of the methods derived from Lawton and Sylvestre's original method. Papers treating the theory or applications of SMCR are included. Qualitative and quantitative applications are described where appropriate.
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  • 31
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    Journal of Chemometrics 4 (1990), S. 15-28 
    ISSN: 0886-9383
    Keywords: Resolution of total luminescence spectra ; Phase-resolved fluorescence spectroscopy ; Generalized rank annihilation method ; Excitation-emission-frequency array ; Simultaneous diagonal decomposition ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Fluorescence lifetime provides a third independent dimension of information for the resolution of total luminescence spectra of multicomponent mixtures. The incorporation of this parameter into the excitation-emission matrix (EEM) by the phase modulation technique results in a three-dimensional excitation-emission-frequency array (EEFA). Multicomponent analysis based on the three-dimensional EEFA brings a qualitative change for the resolved spectra, i.e. individual spectra can be uniquely resolved, which is impossible with any two-dimensional analysis. In this paper we present a method for analyzing the EEFA. We show mathematically that with the three-dimensional analysis of the EEFA individual spectra and lifetimes can be obtained. Our algorithm is developed in mathematical detail and is demonstrated by its application to a two-component mixture.
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  • 32
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    Journal of Chemometrics 4 (1990), S. 102-102 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 33
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    Journal of Chemometrics 4 (1990), S. 101-101 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Chemistry and Pharmacology
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  • 34
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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  • 35
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    Journal of Chemometrics 4 (1990), S. 102-102 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Journal of Chemometrics 4 (1990), S. i 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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  • 37
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    Journal of Chemometrics 4 (1990), S. 187-189 
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    Keywords: Analysis of correlation ; Common latent features ; Trace elements in human tissues ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: If in two data tables X and Y objects are characterized by the same variables (measured at different occasions), then looking for common latent features should be more appropriate than choosing latent features in X and Y separately (e.g. as in canonical correlation or PLS). The procedure to be proposed here is a slight modification of the method of linear characteristics (according to De Groot and Li) by disclaiming the assumption of equal inner-block covariance matrices. In order to find weights defining a latent feature with maximal correlation between X and Y, a system of non-linear equations has to be solved. The procedure is applied to the investigation of heavy metal concentrations in different human tissues.
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    Journal of Chemometrics 4 (1990), S. 194-194 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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  • 39
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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  • 40
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    Journal of Chemometrics 4 (1990), S. i 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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  • 41
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    Journal of Chemometrics 4 (1990), S. 291-298 
    ISSN: 0886-9383
    Keywords: Deconvolution ; Jansson's method ; Peak restoration ; Iterative deconvolution ; Peak resolution ; Chromatographic deconvolution ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The use of a cross-correlation prefiltering technique to enhance the ability of Jansson's iterative deconvolution procedure to deconvolve extremely noisy chromatographic data is investigated. Test cases include peaks whose resolutions are as low as 0.35 and whose signal-to-noise ratios are as low as 1:1. Evaluation criteria include RMS error, relative peak error and peak area repeatability. For comparison purposes, relative peak area errors and peak area variances are also evaluated for noisy but well resolved peaks that have only been prefiltered with the cross-correlation filter. Jansson's method in conjunction with cross-correlation prefiltering is shown not only to resolve overlapped peaks but in some cases to improve their signal-to-noise ratios. The study also establishes some limits to the capabilities of Jansson's method will regard to adverse data conditions.
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  • 42
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    Journal of Chemometrics 4 (1990), S. 271-289 
    ISSN: 0886-9383
    Keywords: Smoothing ; Digital filter ; Shot noise ; Signal processing ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Digital filter smoothing methods for shot-noise-limited data are addressed in this study. The preferred method is based on a Gaussian filter in which the width of the Gaussian filter function is varied depending on the estimate of the second derivative of the raw data. This filter is developed from the standpoint of maximum likelihood parameter estimation of the probability density function which describes shot-noise-limited data. The smoothing filter is tested and compared with the conventional sequential regression filter. This adaptive Gaussian smoothing filter works better than both the sequential regression and the adaptive Gaussian filter derived for normal noise. For data containing both high- and low-frequency components, the limiting step in the adaptive filter is an estimation of the smoothing interval. Methods for determining an optimum smoothing interval are discussed. With the optimized smoothing interval, the adaptive Gaussian filter works well for data sets with a wide range of varying frequency components. In particular, synthetic data typical of atomic emission spectra are used to test this smoothing filter.
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  • 43
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    Journal of Chemometrics 4 (1990) 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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  • 44
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    Journal of Chemometrics 4 (1990), S. 51-59 
    ISSN: 0886-9383
    Keywords: Deconvolution ; Jansson's method ; Peak restoration ; Iterative deconvolution ; Peak resolution ; Non-linear deconvolution ; Super-resolution ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In previous papers Jansson's method was found to be successful at deconvolving severely overlapped gas chromatographic peaks. In the most recent paper the method was evaluated with respect to quantitative accuracy, peak area and retention time repeatability. The problems associated with deconvolving noisy data and some alternatives which can improve the ability of Jansson's method to deconvolve noisy data are discussed. These alternatives include presmoothing the data with a nine-point, third-order polynomial filter and data reblurring. This paper will test these methods on peaks with various degrees of resolution and signal-to-noise ratios.
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  • 45
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    Journal of Chemometrics 4 (1990), S. 61-77 
    ISSN: 0886-9383
    Keywords: Infrared ; Spectroscopy ; Spectrometry ; Retrieval ; Confirmation ; Chemometrics ; Adequate peaks ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the series of analytical techniques for identification of chemical substances, infrared spectrometry presents by far the highest information content. However, the information is most complicated too. It concerns a multitude of band positions, band intensities and band shapes, which, moreover, can be disturbed by matrix and other effects. The high redundancy, however, allows conclusions to be made by a qualitative, subjective procedure.IR is often used to prove the equality between a sample and a reference material, e.g. in quality control of a production process. In forensic control, the question to be answered is mostly not to prove equality, but whether or not the presence of a compound in a sample, e.g. a drug, can be proved. Moreover, testing has to be performed according to objective rules.To fulfil these requirements, a new retrieval algorithm, the ‘Adequate Peaks Search’, is presented. It concerns representing the reference spectra by sets of adequate peak positions and the sample spectrum by a set of all peak positions, whereafter the cross-sections of the sample set and the reference sets are determined. The concept ‘adequate peak’ is defined and criteria have been formulated to evaluate the results into a positive (presence of the analyte is proved) or negative (presence is not proved) conclusion.The detection limit when the Adequate Peaks Search (APS) method was applied was four to seven times lower than that attained by a number of experts.
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  • 46
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    Journal of Chemometrics 4 (1990), S. 79-90 
    ISSN: 0886-9383
    Keywords: PLS ; Three-way matrices ; Calibration ; Residual bilinearization ; Background correction ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: When using hyphenated methods in analytical chemistry, the data obtained for each sample are given as a matrix. When a regression equation is set up between an unknown sample (a matrix) and a calibration set (a stack of matrices), the residual is a matrix R.The regression equation is usually solved by minimizing the sum of squares of R. If the sample contains some constituent not calibrated for, this approach is not valid. In this paper an algorithm is presented which partitions R into one matrix of low rank corresponding to the unknown constituents, and one random noise matrix to which the least squares restrictions are applied. Properties and possible applications of the algorithm are also discussed.In Part 2 of this work an example from HPLC with diode array detection is presented and the results are compared with generalized rank annihilation factor analysis (GRAFA).
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  • 47
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    Journal of Chemometrics 4 (1990), S. 387-387 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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  • 48
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    Journal of Chemometrics 4 (1990), S. 387-387 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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  • 49
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    Journal of Chemometrics 4 (1990), S. 103-121 
    ISSN: 0886-9383
    Keywords: Kalman filter ; Recursive digital filter ; Square-root filter ; Information filter ; Parameter estimation ; Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Chemistry and Pharmacology
    Notes: The use of recursive filtering techniques for parameter estimation in a variety of areas is reviewed. In particular, the Kalman filter algorithm is described, along with several variations, including square-root, UDUT and information filters. The solution to parameter estimation problems is discussed for both linear and non-linear models. Applications described include calibration, curve resolution in spectroscopy, chromatography, electrochemistry, kinetic analysis and process monitoring.
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    Journal of Chemometrics 4 (1990), S. 135-146 
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    Keywords: PLS ; Three-way matrices ; Calibration ; Residual bilinearization ; Background correction ; GRAFA ; Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Chemistry and Pharmacology
    Notes: The partial least squares-residual bilinearization (PLS-RBL) approach to background correction presented in Part 1 of this work is demonstrated with an example from HPLC with diode array detection. Data are also evaluated with generalized rank annihilation factor analysis (GRAFA) and results are compared.
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  • 51
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    Journal of Chemometrics 4 (1990), S. 147-158 
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    Keywords: Knowledge bases ; Diagnostic systems ; Quantifying similarity ; Application of fuzzy set theory ; Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Chemistry and Pharmacology
    Notes: When constructing diagnostic systems or using knowledge-based systems, e.g. in analytical chemistry, features of different type and character, represented by numbers, trajectories or linguistic variables such as intensities or colours, must be considered. To find neighbourhoods or to fill in missing values, the notion of similarity is of essential importance. The paper presents a new fuzzy-set-theory-based approach to quantifying similarity and provides a system of rules to be implemented into the diagnostic part of the knowledge base to be used.
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    Journal of Chemometrics 4 (1990), S. 159-169 
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    Keywords: Covariance stabilization ; Linear mixtures ; Cross-validation ; Rank-one updates ; Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Chemistry and Pharmacology
    Notes: Some well-established ideas from classical covariance stabilization and shrinkage estimation are extended to the context of physical mixtures through the use of a model developed by Burdick and Rayens. A cross-validation techique is proposed and associated computational issues are addressed. The methodology is evaluated in the context of real polychlorinated biphenyl data.
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Journal of Chemometrics 4 (1990), S. 171-185 
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    Keywords: Calibration ; Polynomial regression ; D-optimality ; Experimental design ; Model discrimination ; Lack of fit ; Least squares regression ; Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Chemistry and Pharmacology
    Notes: In this paper a criterion is described for the construction of experimental designs for the evaluation of calibration models in analytical chemistry. The proposed criterion seeks a compromise between the D-optimal designs for estimating the parameters of different polynomial models. A computer algorithm is presented for a sequential construction of experimental designs using the optimality criterion. The performance of the optimality criterion and the computer algorithm is elaborated for the problem of discrimination between a first- to a third-degree polynomial for the calibration of analytical methods. An experimental design consisting of replicate measurements at five distinct levels equally spaced over the calibration range proved a good solution.
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    Journal of Chemometrics 4 (1990) 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Journal of Chemometrics 4 (1990), S. 195-216 
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    Keywords: Entropy ; Decrease of uncertainty ; Information gain ; Relevance coefficients ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Information theory makes it possible to judge and evaluate methods and results in chemical analysis. The obtained information can be expressed in different ways. One way is to define information as the decrease of uncertainity after analysis. Conditional probabilities are therefore considered when evaluating the information provided by qualitative analyses. However, the use of other information measures, such as the information gain, is often preferable. In multicomponent analysis the translation of information from signals to the amounts of the analytes has been investigated along with the relevance of individual components. Information theory can also be applied to find the optimum experimental conditions. The evaluation of the properties of analytical methods by information theory has been proposed.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 13-15 
    ISSN: 0951-4198
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: The characteristics of the detection of ions of the alkali metals and of cluster ions of the type (H2O)NMH+ (where M is an amino acid) are markedly different from those for the detection of protonated saccharose ions. The latter are shown to produce a signal from a secondary electron multiplier detector at a lower ion energy than the threshold energy for the former ions. An explanation is proposed in terms of the charge localization.
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    Notes: The reaction conformations of the metastable molecular ions of the 3-hydroxy steroids were characterized using translational energy (T50%) release values and the ratios of metastable-ion peak heights to those of the main beams determined for the M+· → [M-H2O]+· reactions.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 108-113 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: A method is described whereby, under software control, the scan function employed to collisionally excite ions in an ion-trap mass spectrometer is regulated so as to obtain parent ion (fixed product) tandem mass spectral data. At the same time, constant neutral-loss information is also provided. Key features are the automatic ‘intelligent’ selection of parent ions from observation of the initial mass spectrum and the scanning of the applied ‘tickle’ frequency in order to locate the precise resonance points for excitation of these ions. Results for the model compounds perfluorotributylamine (‘FC43’) and n-butylbenzene are reported and complicating effects such as the unimolecular decay of the precursor ion species and charge exchange between product ions and the original sample material are discussed.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 129-130 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: Collisional activation of MeSOCH2- and PhCH2SOC̄HPh (but not PhSOCH2-) yields an ion of m/z 49, identified as HOS-. It is proposed that this ion is formed following proton transfer to oxygen followed by cyclization and elimination.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 125-128 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: Double-electron-capture reactions in which singly charged projectile ions A+ convert to negative ions A- in collisions with molecules M are endoergic. Non-zero cross-sections for the reactions occur when the endoergicities fall within a ‘reaction window’. The existence of a window for reactions with CH3Br molecules is demonstrated in this investigation by altering the population of ground and excited states of the resulting CH3Br2+ ions using three projectile ions, S+·, OH+ and F+ which markedly alters the endoergicities of the double-electron-capture reactions. Analysis of the energy-loss spectra indicates that the reaction window for CH3Br is between endoergicities of about 8 and 22 eV. Using F+ as the projectile ion, it is shown that the population of the more highly excited states of CH3Br2+ is enhanced.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 135-136 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: Ready identification of hydroxy metabolites of cannabichromene (CBC) by mass spectrometry of their trimethylsilyl derivatives is prevented by the dominant fragmentation to give a substituted chromenyl ion; this suppresses ions diagnostic of the position of metabolic hydroxylation. To overcome this difficulty, metabolites were hydrogenated over a rhodium/alumina catalyst to reduce the double bond responsible for chromenyl ion formation and to redirect the fragmentation to the site of metabolic attack. This resulted in the production of abundant diagnostic fragment ions enabling all monohydroxy-CBCs to be readily identified.
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    Rapid Communications in Mass Spectrometry 4 (1990) 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 198-201 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: The particle beam liquid chromatography/mass spectrometry (LC/MS) interface has been adapted to a double-focusing sector instrument of reversed geometry. Electron ionizaition (EI) mass spectra of single components injected through a loop or of mixtures separated via a reversed-phase LC column have been recorded. These are superimposable with EI mass spectra obtained via a direct-insertion probe. Sensitivity tests show that high picogram and low nanogram amounts of samples can be detected. Complete high-resolution mass spectra on standards (single components and mixtures) were recorded. Good accuracy (better than 5 mmu) was obtained in most cases on 5 μg samples. To illustrate the versatility of the system, mass-analysed ion kinetic energy scans and linked scans at constant B/E were obtained on the molecular ion of cholesterol (2.5 μg and 500 pg). Parameters relating to various parts of a commercial interface are briefly reported.
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    Topics: Physics
    Notes: A combined liquid chromatography/mass spectrometry (LC/MS) method using ion-spray ionization is described for the sensitive determination of okadaic acid and dinophysistoxin-1, the principal toxins implicated in cases of diarrhetic shellfish poisoning. The method is used to confirm the presence of okadaic acid in a culture of the dinoflagellate species Prorocentrum concavum and in natural populations of dinoflagellates from eastern Canadian waters. Several analogues of the toxin have also been detected. Quantitative results are comparable to those obtained by high performance liquid chromatography with fluorescence detection. With slight modifications, the LC/MS method is also used to analyse the fluorescent anthrylmethyl ester of okadaic acid. Preliminary tandem mass spectrometric results, obtained using fast-atom bombardment ionization, are presented for okadaic acid.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 234-236 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
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    Rapid Communications in Mass Spectrometry 4 (1990), S. i 
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 81-87 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: The construction and performance of an electrospray-ionization mass spectrometer with new features are described. The mass spectrometer consists of a newly designed electrospray ion-source that is plugged directly into a modified commercial quadrupole mass spectrometer with the ions entering the mass analyzer through a long metal capillary tube and three stages of differential pumping. The present ion source differs from previous designs in the combination of techniques employed in the transportation and desolvation of solvated biomolecule ions, prior to mass analysis. Transport of ionized entities between atmospheric pressure and vacuum is carried out through a 203 mm long stainless steel capillary tube with a 0.5 mm bore. Desolvation is effected by the use of controlled heat transfer through the long capillary tube and collisional activation in a region of reduced pressure between the capillary tube exit and the skimmer. Desolvation with this system is convenient and effective and does not involve the strong countercurrent flows of gases that have been used by all previous workers. The effects on the spectra of peptides of capillary tube temperature and desolvation collision energy are investigated. Electrospray-ionization mass spectrometric results are described for thirteen proteins with molecular masses ranging from 5000 to 77 000 Da. The performance of the present instrument, with respect to mass accuracy and sensitivity, is comparable with previously reported systems. The effect of protein concentration in solution on the electrospray mass spectrometric response and charge-state distribution is discussed.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 103-107 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: A “key-sequence” procedure is presented for the automated tandem mass spectrometric analysis of compounds on a Finnigan ion-trap mass spectrometer. This allows fragmentation pathways of a range of masses or even a complete spectrum to be prepared automatically, obviating the tiresome preparation and optimization of individual scan-editor files. The procedure is limited by the speed of the driving computer; an “IBM-AT”, for example, permits more than 10 mass units to be scanned per minute. It is calibrated with perfluorotributylamine and methyl stearate is used to demonstrate its results. The Finnigan ion-trap “programming option” is necessary for implementation of the procedure.
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    Notes: Three variously annulated isomeric pyranocoumarins 1, 2 and 3 have been examined using electron ionization and collisional mass spectroscopy. All the spectra showed diagnostic fragments that allowed characterization of the isomers. The best results were obtained using daughter-ion spectra of selected parent ions.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 123-124 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: A particle beam liquid chromatography/mass spectrometry interface has been developed which interfaces to a liquid secondary-ion mass spectrometry ion source. High flow rates (e.g., 0.5-2.0 mL/min) have been achieved with sensitive performance. Matrix compounds were added through the particle-beam interface. A cesium ion gun is used as the source of the primary ions.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 341-344 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: A modification to the electronics controlling the collision energy of an RF-only quadrupole collision cell in a BEqQ geometry mass spectrometer is described. The modification allows the collision energy to be ramped from 0-500 eV while scanning the quadrupole mass analyser. The collision-induced dissociation spectra generated using a ramped collision energy exhibit a 10%-100% increase in product-ion abundance.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 345-347 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: Ammonia negative-ion chemical ionization of intact triacylglycerols at an ion-source-block temperature of 300°C produces simple mass spectra from which the nature of the component acyl moieties can be readily deduced. The technique is compatible with combined high-temperature gas chromatography/mass spectrometry and it has a potentially wide application.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. i 
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    Rapid Communications in Mass Spectrometry 4 (1990) 
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 181-185 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: The abuse of nortestosterone in sport is an important problem in doping-control analysis. In order to detect the main urinary metabolite of nortestosterone, norandrosterone (NA), sensitive and specific methodology is necessary. In this context the use of a low-cost mass spectrometric detector such as the Finnigan MAT ion-trap detector (ITD) was studied. The electron ionization (EI) and positive-ion chemical ionization (PICI) mass spectra of the methoxime-trimethylsilyi, trimethylsilyl-enol trimethylsilyl ether and pentafluoropropionic ester derivatives of NA are described. The limits of detection of these derivatives are compared with those obtained by the Hewlett-Packard mass selective detector (MSD), another low-cost mass spectrometric detector and operating only in the EI mode. For the derivatives of the reference standard of NA the ITD has in the EI mode the same limit of detection, in the range of 0.5 to 1 ng injected on the column, as the MSD. However, under these conditions the ITD provides more spectrometric information, because it gives full scan data. Moreover, with the same or even improved limits of detection the ITD can operate in the PICI mode. On the other hand, for the analysis of NA isolated from urine samples, the performance of the MSD was better than that of the ITD. The ion trapping technique is probably limited when the chemical background is high.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 401-403 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Notes: A tandem mass spectrometer designed especially for process control can be simplified in several ways by comparison with those instruments used for analysis. A low-cost membrane-inlet triple quadrupole mass spectrometer is described that has been designed especially for process control together with examples of continuous monitoring of different organic compounds in mixtures.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 404-405 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: A new gas chromatography/tandem mass spectrometry (GC/MS/MS) analytical approach for monoaromatic steroids is described in comparison with a more conventional GC/MS analysis. Some examples are reported both on standards and on real samples.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 415-417 
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    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: The aims of the investigation were to use the method of dynamically programmed scans to study in detail some tandem mass spectrometric characteristics of the ion-trap mass spectrometer and then to use the programs to investigate the possibility of performing benchtop gas chromatography/tandem mass spectrometry experiments on the standard instrument. In particular we have examined the effect of applying a DC ramp during the ‘tickle’ period as a means of broadening the range of resonant frequencies, thereby facilitating the tuning required to effect excitation.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 410-414 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: The reaction pathway of alkylating agents is often exploited in the design of bifunctional anti-cancer drugs. These drugs form mono-DNA adducts as well as inter- and intra-strand cross-linked adducts, notably by reaction at DNA bases, including the N-7-position of guanine (G). A positive-ion fast-atom bombardment (FAB) mass spectrum of an in vitro preparation of DNA alkylated with phosphoramide mustard (the active metabolite of the anti-cancer drug cyclophosphamide) indicated the presence of the two mono-DNA adducts N-(2-chloroethyl)-N-[2-(7-guaninyl)ethyl] amine, designated NOR—G, and N-(2-hydroxyethyl)-N-[2-(7-guaninyl)ethyl] amine, designated NOR—G—OH, (MH+ 257/259 and 239, respectively) but not the presence of the cross-linked adduct N,N-bis-[2-(7-guaninyl)ethyl] amine, designated G—NOR—G (MH+ 372). Using synthetic standards, daughterion spectra of NOR—G, NOR—G—OH and G—NOR—G were obtained (matrix 0.2 M p-toluene sulphonic acid in glycerol) by positive-ion FAB tandem mass spectrometry (FAB-MS/MS). The daughter-ion spectra of both mono-DNA adducts NOR—G and NOR—G—OH contained a fragment ion at m/z 152 [G + H]+, whereas the cross-linked adduct, G—NOR—G, showed an ion at m/z221, [MH - G]+. Evidence for the presence of NOR—G, NOR—G—OH and G—NOR—G in the in vitro preparation was obtained by performing a double parent-ion scan on m/z 152 and 221. The presence of G—NOR—G was further supported by performing a single parent-ion scan on m/z 221. The use of this MS/MS technique should eliminate the need for intricate sample purification in the identification of G—NOR—G in biological extracts.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 242-244 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: High-resolution translational energy spectroscopy (0.1 eV full width at half maximum) has been performed on 3 keV C+ ions scattered off N2 molecules. The intriguing energy loss spectrum with well-resolved vibrational structure is explained on the basis of simultaneous transitions involving changes of states in the C+ ion and the N2 molecule.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 263-266 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: The possibility of performing matrix-assisted laser desorption experiments in transmission geometry is demonstrated for two neuropeptides (substance P and bombesin), for six analogs of the melanocyte-stimulating hormone (MSH) core and for coliagenase enzyme substrates. Positive- and negative-ion spectra of several peptides are produced without the presence of a metallic substrate. Cationized quasi-molecular ions are abundant in the positive spectra. Peak broadening in the high-mass range can be the consequence of overlapping molecular and adduct ions. The presence of synthesis by-products can be identified readily from the spectra. Ultimately, picogram detection limits are possible for important bioactive peptides and other large molecules. Because of the clearly demonstrated matrix-assisted laser ionization in a homogeneous environment, metal substrate participation in the volatilization mechanism seems less likely.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 267-271 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: Data are presented showing the use of thermospray ionization to generate multiply charged ions for a number of proteins over the molecular weight range 5000-30000. These measurements were carried out on an unmodified, commercially available thermospray ion source. Between +3 and +19 charges were observed for a series of model proteins. Data can be obtained on as little as 100 pmol of sample. The accuracy and precision of the molecular weight determinations for these proteins is similar to those previously reported for these samples using electrospray or ionspray ionization. The formation of multiply charged ions from proteins via thermospray ionization occurs over a wide range of aqueous/organic solvent compositions, facilitating its interfacing with high-performance liquid chromatography using conventional diameter columns.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. i 
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 275-276 
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    Notes: Most deprotonated semicarbazones do not undergo the negative-ion Beckmann rearrangement: instead, simple radical and/or neutral loss is noted, e.g., Me2C=NNHCON̄H→[Me2C=NNH-(O=C=NH)]→OCN-+Me2C=NNH2. However, dimethyl derivatives do undergo minor fragmentation possibly indicative of a Beckmann rearrangement, e.g., .
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 277-278 
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    Topics: Physics
    Notes: The major collision-induced dissociations of deprotonated cyclopentanone involve losses of H2, C2H5 and CH2O. Mechanisms for these processes are proposed.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 279-282 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: The 70 eV electron ionization mass spectra of six cyclohexane fused 2-N-phenyliminoperhydro-1,3-oxazines and six related thiazines were recorded and their fragmentation patterns were studied by metastable-ion analysis and exact mass measurement. All the compounds examined lost a hydrogen atom from their molecular ion in a process best described as intramolecular cyclization. The most typical fragmentations were the loss of various alkyl radicals from the M+· or [M—H]+ ions with the simultaneous migration of one or more hydrogen atoms from the carbocyclic part to the heterocyclic part of the molecule. N-Substitution clearly affected the type and extent of different reactions. In general, the fragmentation patterns of the thiazine derivatives were more complicated than those of the related oxazines. In all cases studied, the cis- and trans-fused isomers gave rise to so similar spectra that their adequate differentiation was not possible.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 301-305 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: Mechanisms related to high-mass ion detection were studied using matrix-assisted UV laser desorption for ion generation and a tandem (MS/MS) time-of-flight mass spectrometer for the analysis of secondary species formed at the conversion dynodes. Secondary-electron emission was found to be less pronounced with increasing molecular weight. Instead small secondary ions generated by collision of primary ions with the conversion dynodes appeared to be the dominant process for the detection of ions of masses up to several hundred thousand Da. The use of microchannel plate detectors has been shown to become less effective for high molecular weight applications. Mass spectra of secondary ions emitted from a conversion dynode bombarded with keV primary ions have been recorded. Regardless of the composition of the primary molecules, the secondary mass spectra were similar. Sputtering of surface adsorbates is assumed to be the major mechanism of secondary ion formation, rather than surface induced dissociation or fragmentation of the primary ions.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. i 
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 348-351 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: Positive-ion time-of-flight mass spectra of sodium salts of oligodeoxyribonucleic acids (DNA), and a protein, lysozyme, have been obtained using pulsed-laser ablation and ionization of frozen aqueous solutions from a cooled copper substrate. The efficiency of positive-ion formation was found to increase when the ablating laser was tuned to a frequency corresponding to resonant electronic transitions in sodium or copper atoms. Molecular ions of double-stranded oligomeric nucleic acids, with little fragmentation, were observed at masses up to ∼18 500 Da. Single-stranded nucleic acids could be fragmented by lowering the laser power-density to reduce the the substrate heating rate. A dimer ion of lysozyme, at mass ∼29 000 Da, was detected at an impact energy on the electron multiplier of only 3.5 keV.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 352-354 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
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    Topics: Physics
    Notes: Radical adducts of 5,5-dimethyl-1-pyrroline N-oxide (DMPO) with hydroxyl, methanol-derived, and ethanol-derived radicals were detected by a combination of liquid chromatography with either electron paramagnetic resonance or thermospray mass spectrometry (LC/EPR or LC/TSP-MS) in the Fenton system (with methanol or ethanol). One radical adduct was observed in the reaction of DMPO with the hydroxyl radical or the methanol-derived radical, while two adducts were detected in the reaction of DMPO with ethanol-derived radicals. The LC/TSP-MS spectra showed quasi-molecular ions [M+H]+ at m/z 146 and m/z 160 for the methanol-derived and ethanol-derived radical adducts, respectively, and an apparent molecular ion M+ at m/z 130 for the hydroxyl radical adduct. Use of methyl-D3 alcohol (CD3OH) and ethyl-D5 alcohol (CD3CD2OH) indicated that carbon-centered radicals are formed. Experiments with partially deuterated ethanol (CD3CH2OH and CH3CD2OH) indicated that the two adducts observed in the reaction of DMPO with ethanol-derived radicals correspond to the two diastereomeric adducts of DMPO with the α-hydroxyethyl free radical.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 360-361 
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    Rapid Communications in Mass Spectrometry 4 (1990), S. ii 
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    Rapid Communications in Mass Spectrometry 4 (1990), S. iii 
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    Rapid Communications in Mass Spectrometry 4 (1990) 
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 366-368 
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    Topics: Physics
    Notes: The double-ionization energy of NH3 to the first triplet state of the dication has been measured by double-charge-transfer spectroscopy using OH+ as the projectile ion. The value determined, 37.9±0.5 eV, is in excellent agreement with that calculated by Tarantelli et al. [Chem. Phys. Lett. 117, 577 (1985)] using the configuration interaction method.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 396-400 
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    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: A combination of mass spectrometric techniques (electrospray mass spectrometry, liquid secondary-ion mass spectrometry (LSIMS), tandem mass spectrometry) has been used for variant hemoglobin detection and characterization. Electrospray mass spectrometry allowed analysis of mixtures of intact globins giving the molecuar weights (accuracy 1-2 Da), and information about relative amounts of globins present, simultaneously. Abnormal hemoglobins detected in this way and by other means (screening, clinical symptoms) were fractionated by C-4 reverse phase high-performance liquid chromatography (HPLC), and the separated globin chains (or the mixture of whole precipitated globin) were digested with trypsin. The tryptic peptides were separated by C-18 reverse phase HPLC and analysed by LSIMS to narrow down the mutation site to a single peptide. In some instances, the molecular weight of a variant peptide was sufficient to determine the mutation uniquely. When molecular weight information alone was insufficient to identify the mutation and its site, the peptide was sequenced by tandem mass spectrometry on a 4-sector instrument. In cases where more than one possible mutation site was present in the peptide and the mutation resulted in a change of only 1 Da in the peptide mass, the resolution and mass measurement accuracy of the 4-sector machine were esential in determining the correct sequence. The practical application of the methodologies presented is illustrated by the identification and analysis of Hb G-San Jose, Hb Willamette and Hb D-Iran.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 406-409 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: A low-energy (5-450 eV) collision-activated dissociation (CAD) study of a series of aliphatic amines revealed that at collision energies above 200 eV, charge-site-initiated fragmentation occurs. The resulting fragment ions can be utilized in the characterization of alkyl substituents of di- and trisubstituted aliphatic amines. In the presence of Cu2+ and a suitable nucleophile, such as n-dodecylamine, N-alkyl protoporphyrins dealkylate to afford copper protoporphyrin and an alkyl-dodecylamine adduct. A CAD study of a number of alkyl-dodecylamine adducts derived from the copper-induced dealkylation of synthetic N-alkyl protoporphyrins, using charge-site-initiated fragment ions, showed that the alkyl group was trapped by the nucleophilic amine present. Subsequently this method was used to identify the alkyl group of a biologically derived N-alkyl protoporphyrin.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 447-448 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: A 4-sector EBEB mass spectrometer, fitted with a liquid secondary-ion mass spectrometer (Cs+) ion source and an array detector has been in use at UCSF for the past 18 months. Using this period, calibration procedures have been developed and operating software refined such that the instrument can now be operated in the tandem mass spectrometry (MS/MS) mode using the array on a routine basis and with a high sample throughput. The instrument has been applied successfully to the analysis of a wide range of peptides, up to molecular weights in excess of 2500. The array is usually operated with a mass resolution of about 1500 full width at half maximum (FWHM), and under these conditions a fragment ion dynamic range of 3000:1 is obtainable. Mass assignment is typically reproducible to within 0.1 u.
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    Rapid Communications in Mass Spectrometry 4 (1990), S. 493-494 
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: The appearance of doubly charged molecular, fragment and cluster ions in the field desorption and field ionization mass spectra of thiotepa are discussed. A comparison with the field-desorption mass spectra of some other oxygen- and sulfur-containing compounds is made and the conclusion reached, that the formation of doubly charged fragment [M—O]2+, [M—S]2+, and cluster [(M—O)M]2+, [(M—S)M]2+ ions is a characteristic behaviour of several types of substances containing =O and =S groups under the conditions of high electric field.
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