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  • Cell Press  (57,562)
  • Institute of Electrical and Electronics Engineers (IEEE)
  • 2015-2019  (99,366)
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  • 1
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cell Reports 11 (2015): 1-12, doi:10.1016/j.celrep.2015.03.049.
    Description: Although recent research revealed an impact of westernization on diversity and composition of the human gut microbiota, the exact consequences on metacommunity characteristics are insufficiently understood, and the underlying ecological mechanisms have not been elucidated. Here, we have compared the fecal microbiota of adults from two non-industrialized regions in Papua New Guinea (PNG) with that of United States (US) residents. Papua New Guineans harbor communities with greater bacterial diversity, lower inter-individual variation, vastly different abundance profiles, and bacterial lineages undetectable in US residents. A quantification of the ecological processes that govern community assembly identified bacterial dispersal as the dominant process that shapes the microbiome in PNG but not in the US. These findings suggest that the microbiome alterations detected in industrialized societies might arise from modern lifestyle factors limiting bacterial dispersal, which has implications for human health and the development of strategies aimed to redress the impact of westernization.
    Description: This study was partly funded by BioGaia AB. BioGaia had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. A portion of this research is part of the Microbiomes in Transition Initiative at Pacific Northwest National Laboratory (PNNL). This research was conducted under the Laboratory Directed Research and Development Program at PNNL, a multi-program national laboratory operated by Battelle for the US Department of Energy under contract DE-AC05-76RL01830.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in iScience 1 (2018): 24-34, doi:10.1016/j.isci.2018.01.001.
    Description: The color and pattern changing abilities of octopus, squid, and cuttlefish via chromatophore neuro-muscular organs are unparalleled. Cuttlefish and octopuses also have a unique muscular hydrostat system in their skin. When this system is expressed, dermal bumps called papillae disrupt body shape and imitate the fine texture of surrounding objects, yet the control system is unknown. Here we report for papillae: (1) the motoneurons and the neurotransmitters that control activation and relaxation, (2) a physiologically fast expression and retraction system, and (3) a complex of smooth and striated muscles that enables long-term expression of papillae through sustained tension in the absence of neural input. The neural circuits controlling acute shape-shifting skin papillae in cuttlefish show homology to the iridescence circuits in squids. The sustained tension in papillary muscles for long-term camouflage utilizes muscle heterogeneity and points toward the existence of a “catch-like” mechanism that would reduce the necessary energy expenditure.
    Description: This work was funded by an AFOSR grant no. FA9550-14-1-0134, Isaac Newton Trust/Wellcome Trust ISSF/University of Cambridge Joint Research Grant (097814/Z/11/Z) to P.T.G-B., and a Biotechnology and Biological Sciences Research Council David Phillips Fellowship (BBSRC, BB/L024667/1) to T.J.W.
    Repository Name: Woods Hole Open Access Server
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  • 3
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cell Reports 25 (2018): 1281–1291, doi:10.1016/j.celrep.2018.10.005.
    Description: Morphogenesis and mechanoelectrical transduction of the hair cell mechanoreceptor depend on the correct assembly of Usher syndrome (USH) proteins into highly organized macromolecular complexes. Defects in these proteins lead to deafness and vestibular areflexia in USH patients. Mutations in a non-USH protein, glutaredoxin domain-containing cysteine-rich 1 (GRXCR1), cause non-syndromic sensorineural deafness. To understand the deglutathionylating enzyme function of GRXCR1 in deafness, we generated two grxcr1 zebrafish mutant alleles. We found that hair bundles are thinner in homozygous grxcr1 mutants, similar to the USH1 mutants ush1c (Harmonin) and ush1ga (Sans). In vitro assays showed that glutathionylation promotes the interaction between Ush1c and Ush1ga and that Grxcr1 regulates mechanoreceptor development by preventing physical interaction between these proteins without affecting the assembly of another USH1 protein complex, the Ush1c- Cadherin23-Myosin7aa tripartite complex. By elucidating the molecular mechanism through which Grxcr1 functions, we also identify a mechanism that dynamically regulates the formation of Usher protein complexes.
    Description: This work was supported by grants from the NIH (DC004186, OD011195, and HD22486).
    Keywords: Grxcr1 ; Usher syndrome ; Hair cell ; Stereocilia ; Glutathionylation ; Harmonin ; Sans
    Repository Name: Woods Hole Open Access Server
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  • 4
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Current Biology 27 (2017): 854–859, doi:10.1016/j.cub.2017.01.050.
    Description: Our visual system allows us to rapidly identify and intercept a moving object. When this object is far away, we base the trajectory on the target’s location relative to an external frame of reference [1]. This process forms the basis for the constant bearing angle (CBA) model, a reactive strategy that ensures interception since the bearing angle, formed between the line joining pursuer and target (called the range vector) and an external reference line, is held constant [2; 3 ; 4]. The CBA model may be a fundamental and widespread strategy, as it is also known to explain the interception trajectories of bats and fish [5 ; 6]. Here, we show that the aerial attack of the tiny robber fly Holcocephala fusca is consistent with the CBA model. In addition, Holcocephala fusca displays a novel proactive strategy, termed “lock-on” phase, embedded with the later part of the flight. We found the object detection threshold for this species to be 0.13°, enabled by an extremely specialized, forward pointing fovea (∼5 ommatidia wide, interommatidial angle Δφ = 0.28°, photoreceptor acceptance angle Δρ = 0.27°). This study furthers our understanding of the accurate performance that a miniature brain can achieve in highly demanding sensorimotor tasks and suggests the presence of equivalent mechanisms for target interception across a wide range of taxa.
    Description: This work was funded by the Air Force Office of Scientific Research (FA9550-15-1-0188 to P.T.G.-B. and K.N. and FA9550-15-1-0068 to D.G.S.), an Isaac Newton Trust/Wellcome Trust ISSF/University of Cambridge Joint Research Grant (097814/Z/11/Z) to P.T.G.-B., a Biotechnology and Biological Sciences Research Council David Phillips Fellowship (BBSRC, BB/L024667/1) to T.J.W., a Royal Society International Exchange Scheme grant to P.T.G.-B. (75166), a Swedish Research Council grant (2012-4740) to K.N., and a Shared Equipment Grant from the School of Biological Sciences (University of Cambridge, RG70368).
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Institute of Electrical and Electronics Engineers (IEEE)
    In:  EPIC3IEEE Transactions on Geoscience and Remote Sensing, Institute of Electrical and Electronics Engineers (IEEE), 57(1), pp. 623-623, ISSN: 0196-2892
    Publication Date: 2024-03-20
    Description: There was a typographical error in [1, eq. (18)]. Instead of (Formula Presented). The equation describes the second-order statistics of the interferometric phases. Its significance lies in the fact that from it, one can derive the statistical properties of a wide range of quantities estimated from an interferometric stack, including the closure phases that we addressed in the paper. The other equations, numerical results, and the conclusions remain unaffected, because the error was of a purely typographical nature.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , notRev
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  • 6
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    Institute of Electrical and Electronics Engineers (IEEE)
    Publication Date: 2015-08-11
    Description: Postdisaster search and rescue is an important application of ultrawideband (UWB) radar systems, which mainly detect trapped victims by their respiratory-motion response. The development of a respiratory-motion detection (RMD) algorithm that can eliminate nonstationary clutter and noise is a challenging task for the application. A new algorithm is proposed to deal with the task in this letter. It uses the multichannel singular spectrum analysis (MSSA) technique to reconstruct the respiratory-motion response detected by a UWB radar. During the reconstruction, the periodicity and range interrelation characteristics of the response are exploited to adaptively identify signal subspaces. The performance of the algorithm is verified both by simulated and real data. The results show its improved performance over the reference algorithms, e.g., a singular-value-decomposition-based algorithm. The adaptive-MSSA-based RMD algorithm has great promise not only in practical use but also for future research of UWB-radar-based human being remote sensing.
    Print ISSN: 1545-598X
    Electronic ISSN: 1558-0571
    Topics: Architecture, Civil Engineering, Surveying , Geography , Geosciences
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  • 7
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    Institute of Electrical and Electronics Engineers (IEEE)
    Publication Date: 2015-08-11
    Description: Land–sea contamination observed in Soil Moisture and Ocean Salinity (SMOS) brightness temperature images is found to have two main contributions: the floor error inherent of image reconstruction and a multiplicative error either in the antenna temperature or in the visibility samples measured by the correlator. The origin of this last one is traced down to SMOS calibration parameters to yield a simple correction scheme, which is validated against several geophysical scenarios. Autoconsistency rules in interferometric synthesis together with redundant and complementary calibration procedures provide a robust SMOS calibration scheme.
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  • 8
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    Institute of Electrical and Electronics Engineers (IEEE)
    Publication Date: 2015-08-11
    Description: This letter proposes a novel algorithm, which is based on the generalized method of moments (GMM), for the estimation and correction of phase errors induced in synthetic aperture radar (SAR) imagery. The GMM algorithm is used to replace the original phase-estimation kernel in the basic structure of the phase-gradient-autofocus algorithm. Since this novel algorithm does not require the observed signal to be a certain distribution model, it is able to estimate arbitrary phase errors. The GMM algorithm has the ability of estimating range-dependent phase errors, which makes it an efficient estimator. As a result, higher accuracy of the estimated phase errors and a better focused image can be achieved. Excellent results have been obtained in autofocusing and imaging experiments on real SAR data.
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  • 9
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    Institute of Electrical and Electronics Engineers (IEEE)
    Publication Date: 2015-08-11
    Description: Strong clutter reflections of terrain and marine surfaces obscure the contrast between the target-of-interest and clutter (terrain and marine surface reflections) in synthetic aperture radar (SAR) images and consequently hinder the efficiency of image interpretation and analysis. To overcome this problem, this letter proposes an efficient clutter suppression method in SAR images, which is named shedding irrelevant patterns (SIP). The essence is to construct a regression function that can suppress clutter and preserve the target patterns concurrently. We assume that the clutter is irrelevant to the target-of-interest and distinguishable in patterns in terms of image-pixel distribution and intensity (spatial information). Experimental results show the efficiency of the proposed method in both clutter suppression and target pattern preservation.
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  • 10
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    Institute of Electrical and Electronics Engineers (IEEE)
    Publication Date: 2015-08-11
    Description: A concern in hyperspectral image classification is the high number of required training samples. When traditional classifiers are applied, feature reduction (FR) techniques are the most common approaches to deal with this problem. Subspace-based classifiers, which are developed based on high-dimensional space characteristics, are another way to handle the high dimension of hyperspectral images. In this letter, a novel subspace-based classification approach is proposed and compared with basic and improved subspace-based classifiers. The proposed classifier is also compared with traditional classifiers that are accompanied by an FR technique and the well-known support vector machine classifier. Experimental results prove the efficiency of the proposed method, especially when a limited number of training samples are available. Furthermore, the proposed method has a very high level of automation and simplicity, as it has no parameters to be set.
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