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  • Phenology  (11)
  • Humans
  • Inorganic Chemistry
  • John Wiley & Sons  (8)
  • MDPI AG  (3)
  • MDPI AG, Basel, Switzerland  (1)
  • 1
    Publication Date: 2022-10-27
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Loranty, Michael M.; Davydov, Sergey P.; Kropp, Heather; Alexander, Heather D.; Mack, Michelle C.; Natali, Susan M.; Zimov, Nikita S. 2018. "Vegetation Indices Do Not Capture Forest Cover Variation in Upland Siberian Larch Forests." Remote Sens. 10, no. 11: 1686, doi:10.3390/rs10111686.
    Description: Boreal forests are changing in response to climate, with potentially important feedbacks to regional and global climate through altered carbon cycle and albedo dynamics. These feedback processes will be affected by vegetation changes, and feedback strengths will largely rely on the spatial extent and timing of vegetation change. Satellite remote sensing is widely used to monitor vegetation dynamics, and vegetation indices (VIs) are frequently used to characterize spatial and temporal trends in vegetation productivity. In this study we combine field observations of larch forest cover across a 25 km2 upland landscape in northeastern Siberia with high-resolution satellite observations to determine how the Normalized Difference Vegetation Index (NDVI) and the Enhanced Vegetation Index (EVI) are related to forest cover. Across 46 forest stands ranging from 0% to 90% larch canopy cover, we find either no change, or declines in NDVI and EVI derived from PlanetScope CubeSat and Landsat data with increasing forest cover. In conjunction with field observations of NDVI, these results indicate that understory vegetation likely exerts a strong influence on vegetation indices in these ecosystems. This suggests that positive decadal trends in NDVI in Siberian larch forests may correspond primarily to increases in understory productivity, or even to declines in forest cover. Consequently, positive NDVI trends may be associated with declines in terrestrial carbon storage and increases in albedo, rather than increases in carbon storage and decreases in albedo that are commonly assumed. Moreover, it is also likely that important ecological changes such as large changes in forest density or variable forest regrowth after fire are not captured by long-term NDVI trends.
    Description: We thank numerous undergraduate and graduate research assistants, and Polaris Project participants for field and lab assistance. We thank the staff and scientists at the Northeast Science Station for logistical and field support. Lastly, we thank the editors and six anonymous reviewers whose comments helped to improve this paper.
    Keywords: Boreal forest ; NDVI ; Phenology ; Greening ; Arctic ; Siberia ; Larch ; CubeSat
    Repository Name: Woods Hole Open Access Server
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  • 2
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in International Journal of Environmental Research and Public Health 15 (2018): 723, doi:10.3390/ijerph15040723.
    Description: There has been a massive increase in recent years of the use of lead (Pb) isotopes in attempts to better understand sources and pathways of Pb in the environment and in man or experimental animals. Unfortunately, there have been many cases where the quality of the isotopic data, especially that obtained by quadrupole inductively coupled plasma mass spectrometry (Q-ICP-MS), are questionable, resulting in questionable identification of potential sources, which, in turn, impacts study interpretation and conclusions. We present several cases where the isotopic data have compromised interpretation because of the use of only the major isotopes 208Pb/206Pb and 207Pb/206Pb, or their graphing in other combinations. We also present some examples comparing high precision data from thermal ionization (TIMS) or multi-collector plasma mass spectrometry (MC-ICP-MS) to illustrate the deficiency in the Q-ICP-MS data. In addition, we present cases where Pb isotopic ratios measured on Q-ICP-MS are virtually impossible for terrestrial samples. We also evaluate the Pb isotopic data for rat studies, which had concluded that Pb isotopic fractionation occurs between different organs and suggest that this notion of biological fractionation of Pb as an explanation for isotopic differences is not valid. Overall, the brief review of these case studies shows that Q-ICP-MS as commonly practiced is not a suitable technique for precise and accurate Pb isotopic analysis in the environment and health fields
    Keywords: Lead isotopes ; ICP-MS ; TIMS ; MC-ICP-MS ; Environment ; Humans ; Rats ; Fractionation
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  • 3
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Remote Sensing 10 (2018): 932, doi:10.3390/rs10060932.
    Description: We assessed the performance of reflectance-based vegetation indices and solar-induced chlorophyll fluorescence (SIF) datasets with various spatial and temporal resolutions in monitoring the Gross Primary Production (GPP)-based phenology in a temperate deciduous forest. The reflectance-based indices include the green chromatic coordinate (GCC), field measured and satellite remotely sensed Normalized Difference Vegetation Index (NDVI); and the SIF datasets include ground-based measurement and satellite-based products. We found that, if negative impacts due to coarse spatial and temporal resolutions are effectively reduced, all these data can serve as good indicators of phenological metrics for spring. However, the autumn phenological metrics derived from all reflectance-based datasets are later than the those derived from ground-based GPP estimates (flux sites). This is because the reflectance-based observations estimate phenology by tracking physiological properties including leaf area index (LAI) and leaf chlorophyll content (Chl), which does not reflect instantaneous changes in phenophase transitions, and thus the estimated fall phenological events may be later than GPP-based phenology. In contrast, we found that SIF has a good potential to track seasonal transition of photosynthetic activities in both spring and fall seasons. The advantage of SIF in estimating the GPP-based phenology lies in its inherent link to photosynthesis activities such that SIF can respond quickly to all factors regulating phenological events. Despite uncertainties in phenological metrics estimated from current spaceborne SIF observations due to their coarse spatial and temporal resolutions, dates in middle spring and autumn—the two most important metrics—can still be reasonably estimated from satellite SIF. Our study reveals that SIF provides a better way to monitor GPP-based phenological metrics.
    Description: This research was supported by U. S. Department of Energy Office of Biological and Environmental Research Grant DE-SC0006951, National Science Foundation Grants DBI 959333 and AGS-1005663, and the University of Chicago and the MBL Lillie Research Innovation Award to Jianwu Tang and China Scholarship Council No. 201506190095 to Z. Liu. Xiaoliang Lu was also supported by the open project grant (LBKF201701) of Key Laboratory of Land Surface Pattern and Simulation, Chinese Academy of Sciences.
    Keywords: Solar-induced chlorophyll fluorescence ; Reflectance ; Phenology ; Fall phenological events
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  • 4
    Publication Date: 2022-05-25
    Description: Author Posting. © Ecological Society of America, 2017. This article is posted here by permission of Ecological Society of America for personal use, not for redistribution. The definitive version was published in Ecology 98 (2017): 940-951, doi:10.1002/ecy.1749.
    Description: Evidence of climate-change-driven shifts in plant and animal phenology have raised concerns that certain trophic interactions may be increasingly mismatched in time, resulting in declines in reproductive success. Given the constraints imposed by extreme seasonality at high latitudes and the rapid shifts in phenology seen in the Arctic, we would also expect Antarctic species to be highly vulnerable to climate-change-driven phenological mismatches with their environment. However, few studies have assessed the impacts of phenological change in Antarctica. Using the largest database of phytoplankton phenology, sea-ice phenology, and Adélie Penguin breeding phenology and breeding success assembled to date, we find that, while a temporal match between Penguin breeding phenology and optimal environmental conditions sets an upper limit on breeding success, only a weak relationship to the mean exists. Despite previous work suggesting that divergent trends in Adélie Penguin breeding phenology are apparent across the Antarctic continent, we find no such trends. Furthermore, we find no trend in the magnitude of phenological mismatch, suggesting that mismatch is driven by interannual variability in environmental conditions rather than climate-change-driven trends, as observed in other systems. We propose several criteria necessary for a species to experience a strong climate-change-driven phenological mismatch, of which several may be violated by this system.
    Description: Funding to H. J. Lynch and C. Youngflesh was provided by the National Science Foundation Grant OPP/GSS 1255058, to S. Jenouvrier, H. J. Lynch, C. Youngflesh, Y. Li, and R. Ji by the National Science Foundation Grant 1341474, to S. Jenouvrier, Y. Li, and R. Ji by NASA grant NNX14AH74G, to D. G. Ainley, G. Ballard, and K. M. Dugger by the National Science Foundation Grants OPP 9526865, 9814882, 0125608, 0944411 and 0440643, to P. O’B. Lyver by New Zealand’s Ministry of Business, Innovation, and Employment Grants C09X0510 and C01X1001, and Ministry of Primary Industry grants with logistic support from Antarctica New Zealand.
    Keywords: Anna Karenina Principle ; Antarctica ; Asynchrony ; Bayesian hierarchical model ; Climate change ; Phenology ; Pygoscelis adeliae ; Quantile regression
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  • 5
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecology and Evolution 7 (2017): 9775–9786, doi:10.1002/ece3.3445.
    Description: Eriophorum vaginatum is a tussock-forming sedge that contributes significantly to the structure and primary productivity of moist acidic tussock tundra. Locally adapted populations (ecotypes) have been identified across the geographical distribution of E. vaginatum; however, little is known about how their growth and phenology differ over the course of a growing season. The growing season is short in the Arctic and therefore exerts a strong selection pressure on tundra species. This raises the hypothesis that the phenology of arctic species may be poorly adapted if the timing and length of the growing season change. Mature E. vaginatum tussocks from across a latitudinal gradient (65–70°N) were transplanted into a common garden at a central location (Toolik Lake, 68°38′N, 149°36′W) where half were warmed using open-top chambers. Over two growing seasons (2015 and 2016), leaf length was measured weekly to track growth rates, timing of senescence, and biomass accumulation. Growth rates were similar across ecotypes and between years and were not affected by warming. However, southern populations accumulated significantly more biomass, largely because they started to senesce later. In 2016, peak biomass and senescence of most populations occurred later than in 2015, probably induced by colder weather at the beginning of the growing season in 2016, which caused a delayed start to growth. The finish was delayed as well. Differences in phenology between populations were largely retained between years, suggesting that the amount of time that these ecotypes grow has been selected by the length of the growing seasons at their respective home sites. As potential growing seasons lengthen, E. vaginatum may be unable to respond appropriately as a result of genetic control and may have reduced fitness in the rapidly warming Arctic tundra.
    Description: National Science Foundation Grant Numbers: 1417645, 1417763, 1418010
    Keywords: Arctic tundra ; Common garden ; Ecotypes ; Eriophorum vaginatum ; Growing season length ; Local adaptation ; Phenology ; Senescence
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  • 6
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosphere 7 (2016): e01436, doi:10.1002/ecs2.1436.
    Description: Plant phenology research has gained increasing attention because of the sensitivity of phenology to climate change and its consequences for ecosystem function. Recent technological development has made it possible to gather invaluable data at a variety of spatial and ecological scales. Despite our ability to observe phenological change at multiple scales, the mechanistic basis of phenology is still not well understood. Integration of multiple disciplines, including ecology, evolutionary biology, climate science, and remote sensing, with long-term monitoring data across multiple spatial scales is needed to advance understanding of phenology. We review the mechanisms and major drivers of plant phenology, including temperature, photoperiod, and winter chilling, as well as other factors such as competition, resource limitation, and genetics. Shifts in plant phenology have significant consequences on ecosystem productivity, carbon cycling, competition, food webs, and other ecosystem functions and services. We summarize recent advances in observation techniques across multiple spatial scales, including digital repeat photography, other complementary optical measurements, and solar-induced fluorescence, to assess our capability to address the importance of these scale-dependent drivers. Then, we review phenology models as an important component of earth system modeling. We find that the lack of species-level knowledge and observation data leads to difficulties in the development of vegetation phenology models at ecosystem or community scales. Finally, we recommend further research to advance understanding of the mechanisms governing phenology and the standardization of phenology observation methods across networks. With the opportunity for “big data” collection for plant phenology, we envision a breakthrough in process-based phenology modeling.
    Description: U.S. National Science Foundation Grant Numbers: PLR-1417763, DBI-959333, AGS-1005663; University of Chicago and the MBL Lillie Research Innovation Award; NEXT Program; KAKENHI (MEXT, Japan); National Science Foundation of China Grant Number: 41571103; NERC Grant Number: NE/J02080X/1
    Keywords: Cameras ; Greenness ; ILTER ; Modeling ; Phenology ; Scale ; International LTER
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  • 7
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosphere 6, no. 12 (2015): 1-9, doi:10.1890/ES14-00452.1.
    Description: Plant phenology has a significant impact on the forest ecosystem carbon balance. Detecting plant phenology by capturing the time-series canopy images through digital camera has become popular in recent years. However, the relationship between color indices derived from camera images and plant physiological characters are elusive during the growing season in temperate ecosystems. We collected continuous images of forest canopy, leaf size, leaf area index (LAI) and leaf chlorophyll measured by a soil plant analysis development (SPAD) analyzer in a northern subtropical oak forest in China. Our results show that (1) the spring peak of color indices, Gcc (Green Chromatic Coordinates) and ExG (Excess Green), was 18 days earlier than the 90% maximum SPAD value; (2) the 90% maximum SPAD value coincided with the change point of Gcc and ExG immediately after their spring peak; and (3) the spring curves of Gcc and ExG before their peaks were highly synchronous with the expansion of leaf size and the development of LAI value. We suggest it needs to be adjusted if camera-derived Gcc or ExG is used as a proxy of chlorophyll or gross primary productivity, and images observation should be complemented with field phenological and physiological information to interpret the physiological meaning of leaf seasonality.
    Description: This research was funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions in the Discipline of Environmental Science and Engineering at Nanjing Forest University, Changjiang River Delta Urban Forest Ecosystem Research of CFERN (to H. Hu) and Brown University Seed Funds for International Research Projects on the Environment (to J. Tang).
    Keywords: Chlorophyll ; Greenness indices ; Leaf area index ; Leaf sizes ; Phenology ; Plant images
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  • 8
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 121 (2016): 1476–1501, doi:10.1002/2015JC011449.
    Description: A new planktonic ecosystem model was constructed for the Eastern Bering Sea based on observations from the 2007–2010 BEST/BSIERP (Bering Ecosystem Study/Bering Sea Integrated Ecosystem Research Program) field program. When run with forcing from a data-assimilative ice-ocean hindcast of 1971–2012, the model performs well against observations of spring bloom time evolution (phytoplankton and microzooplankton biomass, growth and grazing rates, and ratios among new, regenerated, and export production). On the southern middle shelf (57°N, station M2), the model replicates the generally inverse relationship between ice-retreat timing and spring bloom timing known from observations, and the simpler direct relationship between the two that has been observed on the northern middle shelf (62°N, station M8). The relationship between simulated mean primary production and mean temperature in spring (15 February to 15 July) is generally positive, although this was found to be an indirect relationship which does not continue to apply across a future projection of temperature and ice cover in the 2040s. At M2, the leading direct controls on total spring primary production are found to be advective and turbulent nutrient supply, suggesting that mesoscale, wind-driven processes—advective transport and storminess—may be crucial to long-term trends in spring primary production in the southeastern Bering Sea, with temperature and ice cover playing only indirect roles. Sensitivity experiments suggest that direct dependence of planktonic growth and metabolic rates on temperature is less significant overall than the other drivers correlated with temperature described above.
    Description: This work was supported by the National Science Foundation through grants ARC-1107187, ARC-1107303, and ARC-1107588, for BEST Synthesis, and PLR-1417365.
    Description: 2016-08-20
    Keywords: Phytoplankton bloom ; Climate change ; Bering Sea ; Microzooplankton ; Ecosystem model ; Phenology
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  • 9
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 121 (2016); 934–948, doi:10.1002/2015JC011183.
    Description: Previous observational studies have found increasing primary production (PP) in response to declining sea ice cover in the Arctic Ocean. In this study, under-ice PP was assessed based on three coupled ice-ocean-ecosystem models participating in the Forum for Arctic Modeling and Observational Synthesis (FAMOS) project. All models showed good agreement with under-ice measurements of surface chlorophyll-a concentration and vertically integrated PP rates during the main under-ice production period, from mid-May to September. Further, modeled 30-year (1980–2009) mean values and spatial patterns of sea ice concentration compared well with remote sensing data. Under-ice PP was higher in the Arctic shelf seas than in the Arctic Basin, but ratios of under-ice PP over total PP were spatially correlated with annual mean sea ice concentration, with higher ratios in higher ice concentration regions. Decreases in sea ice from 1980 to 2009 were correlated significantly with increases in total PP and decreases in the under-ice PP/total PP ratio for most of the Arctic, but nonsignificantly related to under-ice PP, especially in marginal ice zones. Total PP within the Arctic Circle increased at an annual rate of between 3.2 and 8.0 Tg C/yr from 1980 to 2009. This increase in total PP was due mainly to a PP increase in open water, including increases in both open water area and PP rate per unit area, and therefore much stronger than the changes in under-ice PP. All models suggested that, on a pan-Arctic scale, the fraction of under-ice PP declined with declining sea ice cover over the last three decades.
    Description: NASA Grant Number: NNX13AE81G; the NSF Office of Polar Programs Grant Number: (ARC-0968676, PLR-1417925, PLR-1417677 and PLR-1416920); the NASA Cryosphere Grant Number: (NNX12AB31G); Climate and Biological Response Grant Number: (NNX11AO91G)
    Description: 2016-07-27
    Keywords: Ecosystem modeling ; Sea ice ; Under-ice production ; Phenology ; Primary production ; Arctic Ocean
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  • 10
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 43 (2016): 2086–2093, doi:10.1002/2016GL067937.
    Description: Phytoplankton in Antarctic coastal polynyas has a temporally short yet spatially variant growth window constrained by ice cover and day length. Using 18-year satellite measurements (1997–2015) of sea ice and chlorophyll concentrations, we assessed the synchronicity between the spring phytoplankton bloom and light availability, taking into account the ice cover and the incident solar irradiance, for 50 circum-Antarctic coastal polynyas. The synchronicity was strong (i.e., earlier ice-adjusted light onset leads to earlier bloom and vice versa) in most of the western Antarctic polynyas but weak in a majority of the eastern Antarctic polynyas. The west-east asymmetry is related to sea ice production rate: the formation of many eastern Antarctic polynyas is associated with strong katabatic wind and high sea ice production rate, leading to stronger water column mixing that could damp phytoplankton blooms and weaken the synchronicity.
    Description: This research was funded by NASA (grant NNX14AH74G) and U.S. National Science Foundation (grant PLR-1341558).
    Description: 2016-09-05
    Keywords: Phenology ; Synchronicity ; Phytoplankton ; Ice retreat ; Antarctic polynya
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  • 11
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Biogeosciences 119 (2014): 181-191, doi:10.1002/2013JG002460.
    Description: Plant phenology, a sensitive indicator of climate change, influences vegetation-atmosphere interactions by changing the carbon and water cycles from local to global scales. Camera-based phenological observations of the color changes of the vegetation canopy throughout the growing season have become popular in recent years. However, the linkages between camera phenological metrics and leaf biochemical, biophysical, and spectral properties are elusive. We measured key leaf properties including chlorophyll concentration and leaf reflectance on a weekly basis from June to November 2011 in a white oak forest on the island of Martha's Vineyard, Massachusetts, USA. Concurrently, we used a digital camera to automatically acquire daily pictures of the tree canopies. We found that there was a mismatch between the camera-based phenological metric for the canopy greenness (green chromatic coordinate, gcc) and the total chlorophyll and carotenoids concentration and leaf mass per area during late spring/early summer. The seasonal peak of gcc is approximately 20 days earlier than the peak of the total chlorophyll concentration. During the fall, both canopy and leaf redness were significantly correlated with the vegetation index for anthocyanin concentration, opening a new window to quantify vegetation senescence remotely. Satellite- and camera-based vegetation indices agreed well, suggesting that camera-based observations can be used as the ground validation for satellites. Using the high-temporal resolution dataset of leaf biochemical, biophysical, and spectral properties, our results show the strengths and potential uncertainties to use canopy color as the proxy of ecosystem functioning.
    Description: This research was supported by the Brown University– Marine Biological Laboratory graduate program in Biological and Environmental Sciences, Brown–ECI phenology working group, Brown Office of International Affairs Seed Grant on phenology, and Marine Biological Laboratory start-up funding for JT.
    Description: 2014-09-30
    Keywords: Green-up ; Senescence ; Phenology ; Leaf physiology ; Chlorophyll ; Vegetation spectroscopy
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  • 12
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Remote Sensing 6 (2014): 4660-4686, doi:10.3390/rs6064660.
    Description: Vegetation phenology plays an important role in regulating processes of terrestrial ecosystems. Dynamic ecosystem models (DEMs) require representation of phenology to simulate the exchange of matter and energy between the land and atmosphere. Location-specific parameterization with phenological observations can potentially improve the performance of phenological models embedded in DEMs. As ground-based phenological observations are limited, phenology derived from remote sensing can be used as an alternative to parameterize phenological models. It is important to evaluate to what extent remotely sensed phenological metrics are capturing the phenology observed on the ground. We evaluated six methods based on two vegetation indices (VIs) (i.e., Normalized Difference Vegetation Index and Enhanced Vegetation Index) for retrieving the phenology of temperate forest in the Agro-IBIS model. First, we compared the remotely sensed phenological metrics with observations at Harvard Forest and found that most of the methods have large biases regardless of the VI used. Only two methods for the leaf onset and one method for the leaf offset showed a moderate performance. When remotely sensed phenological metrics were used to parameterize phenological models, the bias is maintained, and errors propagate to predictions of gross primary productivity and net ecosystem production. Our results show that Agro-IBIS has different sensitivities to leaf onset and offset in terms of carbon assimilation, suggesting it might be better to examine the respective impact of leaf onset and offset rather than the overall impact of the growing season length.
    Keywords: Phenology ; Remote sensing ; Dynamic ecosystem model ; Agro-IBIS ; MODIS
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