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  • Environment Agency
  • 1
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    Environment Agency | UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10969 | 1256 | 2013-03-26 13:54:54 | 10969 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-25
    Description: This is the Investigation of rising nitrate concentrations in groundwater in the Eden Valley, Cumbria report produced by the Environment Agency in 2003. This report focuses on groundwater nitrate concentrations in the Eden Valley. Most boreholes in the Eden Valley had nitrate concentrations less than 20 mg/l but a significant number had higher concentrations, some exceeding the EC maximum admissible concentration for drinking water of 50 mg/l. The main objectives of this report were to investigate the causes of rising nitrate concentrations in groundwater in the Permo-Triassic sandstone aquifers of the Eden Valley area and provide sufficient understanding of the groundwater and surface water flow system, including the sources of the nitrate contamination and the processes controlling nitrate movement, so that possible management options for reversing this trend can be considered.
    Description: Environment Agency Archives North West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cumbria ; Eden valley ; Rivers ; Aquifers ; Boreholes ; Freshwater pollution ; Water quality ; Nitrate concentrations ; Hydrology ; Modelling
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 86
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  • 2
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    Environment Agency | UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10984 | 1256 | 2013-03-26 13:51:12 | 10984 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-25
    Description: This is the report on Habitats Directive, the Review of Consents Stage 1 and 2 by the Environment Agency of the Manchester Mosslands cSAC, Astley and Bedford Moss, Holcroft Moss and Risley Moss.The Habitats Directive has the main aim to promote the maintenance of biodiversity by defining a common framework for the conservation of wild plants and animals and habitats of community interest. The Directive establishes a European ecological network known as "Natura 2000". The network comprises Special Areas of Conservation (SAC) and Special Protection Areas (SPA). In the section on Stage 1 or Screening Process of the Habitat Directive, it is identified the likely impacts upon the Manchester Mosslands cSAC, Astley and Bedford Moss, Holcroft Moss and Risley Moss of a project, plan or activities, either alone or in combination with other projects, plans or activities, and considers whether these impacts are likely to be significant. In the section on Stage 2 or Appropiate Assessment of the Habitat Directive, it is considered the impact on the integrity of the Manchester Mosslands cSAC, Astley and Bedford Moss, Holcroft Moss and Risley Moss of the projects, plans or activities, either alone or in combination with other projects, plans or activities, with respect to the site’s structure and function and its conservation objectives. Additionally, where these are adverse impacts, an assessment of the potential mitigation of those impacts. The criteria used in this report to identify relevant projects, plans or activities and their impacts are water quality discharge consents, waste management licences, abstraction licences, Integration Pollution Control (IPC) and Integrated Pollution Prevention Control (IPPC) permits. Proformas, hydrogeological and GIS maps are included in the review.
    Description: Environment Agency Archives North West
    Keywords: Fisheries ; Limnology ; Management ; England ; Manchester Mosslands cSAC ; Astley Moss ; Bedford Moss ; Holcroft Moss ; Risley Moss ; Habitats Directive ; SAC ; SPA ; Screening ; Assessment ; Impacts ; Waste management ; Discharge licences ; Abstraction licences ; Pollution prevention ; Pollution control
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 127
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  • 3
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    Environment Agency | UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10989 | 1256 | 2013-03-26 13:49:41 | 10989 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-25
    Description: This is the report on Habitats Directive, the Review of Consents Stage 1 and 2 by the Environment Agency of the Oak Mere cSAC.The Habitats Directive has the main aim to promote the maintenance of biodiversity by defining a common framework for the conservation of wild plants and animals and habitats of community interest. The Directive establishes a European ecological network known as "Natura 2000". The network comprises Special Areas of Conservation (SAC) and Special Protection Areas (SPA). In the section on Stage 1 or Screening Process of the Habitat Directive, it is identified the likely impacts upon the Oak Mere cSAC of a project, plan or activities, either alone or in combination with other projects, plans or activities, and considers whether these impacts are likely to be significant. In the section on Stage 2 or Appropiate Assessment of the Habitat Directive, it is considered the impact on the integrity of the Oak Mere cSAC of the projects, plans or activities, either alone or in combination with other projects, plans or activities, with respect to the site’s structure and function and its conservation objectives. Additionally, where these are adverse impacts, an assessment of the potential mitigation of those impacts. The criteria used in this report to identify relevant projects, plans or activities and their impacts are water quality discharge consents, waste management licences, abstraction licences, Integration Pollution Control (IPC) and Integrated Pollution Prevention Control (IPPC) permits. Proformas, hydrogeological and GIS maps are included in the review.
    Description: Environment Agency Archives North West
    Keywords: Fisheries ; Limnology ; Management ; England ; Oak Mere ; Habitats Directive ; SAC ; SPA ; Screening ; Assessment ; Impacts ; Waste management ; Discharge licences ; Abstraction licences ; Pollution prevention ; Pollution control
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 26
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  • 4
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    Environment Agency | UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10992 | 1256 | 2013-03-26 13:49:31 | 10992 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-25
    Description: This is a technical report of a hydrogeological assessment by the Environment Agency, an assessment to inform the Stage 3 review of Consents under the Habitats Directive for Wybunbury Moss, a National Nature Reserve and Special Area of Conservation in Cheshire. In the Stage 2 Review of Consents, one groundwater licence could not be clearly assessed as having no significant impact and so was taken forward to Stage 3. Further work has been carried out to refine the understanding of groundwater flow and the extent of the actual groundwater catchment of Wybunbury Moss, including three drilled boreholes, the monitoring of groundwater levels in the boreholes by data-loggers for more than 18 months and the sampling and analysis of the groundwater from the boreholes. Results of this further work are shown in Appendixes. From this work, a geological cross-section and Conceptual Model has been produced, and a map showing the revised understanding of the groundwater catchment of Wybunbury Moss. It also includes in Appendix I, the Stage 2 Review of Consents previously made.
    Description: Environment Agency Archives North West
    Description: +4appendices
    Keywords: Fisheries ; Limnology ; Management ; England ; Wybunbury Moss ; Habitats Directive ; Environmental assessment ; Impacts ; Groundwater abstraction ; Groundwater quality ; Groundwater management
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
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  • 5
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    Environment Agency | Bristol, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11083 | 1256 | 2013-03-27 12:47:07 | 11083 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-27
    Description: This report is the fourth collation of salmon and migratory trout catch statistics for England and Wales produced by the Environment Agency. For the years 1989-94 these statistics were published by the National Rivers Authority (NRA) and for the years 1983-88 by the Ministry of Agriculture, Fisheries and Food, Directorate of Fisheries Research, in its Data Report series. This report is designed to be a reference document of declared salmonid catches in England and Wales. Salmon stock assessment data including provisional catches, counter run estimates and some juvenile data are now published in an annual assessment for the International Council for the Exploitation of the Seas (ICES). The second report in this series was published jointly by the Environment Agency and the Centre for Environment, Fisheries & Aquatic Science (CEFAS) in April 1998 (Anon 1999).
    Description: Environment Agency Archives North West
    Description: + tables and figures
    Keywords: Fisheries ; Limnology ; Management ; UK ; England ; Wales ; Inland waters ; Rivers ; Migratory species ; Freshwater fish ; Fish counters ; Fish passes ; Fish catch statistics ; Fisheries
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 8
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  • 6
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    Environment Agency | UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11096 | 1256 | 2013-04-03 15:31:02 | 11096 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-27
    Description: This is the River Eden RHS and geomorphology evaluation: Final report October 2001 produced by the Environment Agency North West in 2001. This report analysed the River Habitat Survey (RHS) and geomorphology data to evaluate the level of habitat quality and the geomorphological characteristics of the River Eden and sub-catchments. RHS data and geomorphological assessment data was collected within the study areas by CEH and Fluvial Environmental Services Ltd. The River Eden and its sub-catchments are being considered as a Special Area for Conservation (SAC) due to the presence of habitat types and species, which are rare or threatened within Europe. The purpose of the project is to provide an overview of the state of the catchment in terms of river habitats and geomorphological processes in order to aid the derivation of sound management for this proposed SAC.The aim of this report was to determine the state of the environment within the Eden and sub-catchments and identify the main pressures on the system in order to derive sound management options.
    Description: Environment Agency Archives North West
    Keywords: Ecology ; Limnology ; Management ; England ; River Eden ; Inland waters ; Rivers ; RHS ; Environmental assessment ; Water quality ; Nature conservation ; Eden Rivers Trust ; English Nature
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 133
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  • 7
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    Environment Agency | Carlisle, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11100 | 1256 | 2013-04-03 15:27:32 | 11100 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the Report of 1996 survey of Trout Beck with particular reference to spawning gravel quality and invertebrates as a food source for salmonids produced by the Environment Agency North West. Whilst the main River Derwent is quite a high profile salmon fishery, Trout Beck is not a significant fishery in its own right, but serves to maintain the genetic integrity of the wild populations of trout and salmon in the catchment by providing a unique habitat. This survey addressed the invertebrate food availability, and additionally looked at the substrate to try to determine whether the bed type might actually be unsuitable for spawning, especially in view of the previously mentioned silt inputs.
    Description: Environment Agency Archives North West
    Description: + 1 map and 1 figure
    Keywords: Ecology ; Fisheries ; Limnology ; England ; Trout Beck ; Inland waters ; Rivers ; Environmental survey ; Freshwater fishes ; Migratory species ; Invertebrate larvae
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 8
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  • 8
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    Environment Agency | Cornwall, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11109 | 1256 | 2013-04-06 16:11:25 | 11109 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Lynher Salmon Action Plan Final document produced by the Environment Agency in 1999. This final Salmon Action Plan (SAP) for the River Lynher catchment has been produced after consideration of feedback from external consultation. It provides a list of the agreed issues and actions for the next five years to maintain and improve the River Lynher salmon stock. The actions presented within this final Salmon Action Plan clarify the important issues and factors currently limiting the salmon stock on the river. The resolution of these issues should ensure that a sustainable salmon population will be maintained for future generations. The River Lynher salmon stock has suffered two periods of spawning target failure within the past ten years. This assessment can only be estimated and in this case is likely to be dependent on river flow and the availability of salmon to the rods as only rod catch is used in the compliance assessment.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Lynher ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
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  • 9
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    Environment Agency | Cornwall, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11114 | 1256 | 2013-04-06 16:10:41 | 11114 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Tavy Salmon Action Plan Final document produced by the Environment Agency in 2000. This final Salmon Action Plan (SAP) for the River Tavy catchment has been produced after consideration of feedback from external consultation. It provides a list of the agreed issues and actions for the next five years to maintain and improve the River Tavy salmon stock. The actions presented within this Salmon Action Plan clarify the important issues and factors currently limiting the salmon stock on the river. The resolution of these issues should ensure that a sustainable salmon population will be maintained for future generations. An attempt has been made to cost these actions, identify possible sources of funding and to provide a timescale for action. This Action Plan aims to promote long term collaboration and co-operation between the Agency and other interested parties to effectively and efficiently manage the stock of salmon on the River Tavy.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Tavy ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
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  • 10
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    Environment Agency | Exeter, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11119 | 1256 | 2013-04-06 16:10:00 | 11119 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Axe Salmon Action Plan Consultation document produced by the Environment Agency in 2003. The report pays attention on the external consultation of the River Axe Salmon Action Plan (SAP). This strategy represents an entirely new approach to salmon management within the UK and introduces the concept of river-specific salmon spawning targets as a salmon management tool. This document is part of a national initiative to produce action plans for the management of all the main salmon rivers of England and Wales by 2003. The aim of this plan is (i) to assess the status of the salmon stocks and fisheries of the River Axe - including the use of Conservation Limits as part of this process, (ii) to identify factors which may be limiting stock and fishery performance and (iii) to propose remedial measures address these factors. The salmon stock of the River Axe was apparently in a healthy state in the 1950s, supporting net and rod fisheries with average annual catches of around 100 and 50 fish respectively. Catches declined through the 1970s and 1980s to the extent where no salmon were recorded in the late 1980s and early 1990s. This decline was probably due largely to the effects of agricultural pollution, which virtually extinguished the salmon stock of the River Axe. Water quality has subsequently improved, but has deteriorated again in recent years.
    Description: Environment Agency Archives North West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Axe ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fish catch statistics ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
    Repository Name: AquaDocs
    Type: monograph
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  • 11
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    Environment Agency | Exeter, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11125 | 1256 | 2013-04-06 15:59:47 | 11125 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Lyn Salmon Action Plan Consultation document produced by the Environment Agency in 2003. The report pays attention on the external consultation of the River Lyn Salmon Action Plan (SAP). This approach to salmon management within the England and Wales introduces the concept of river-specific Conservation Limits as a method of assessing the status of the salmon stock. The River Lyn Salmon Action Plan follows the format of those completed for the Rivers Exe, Axe, Avon & Erme, Teign, Torridge, Taw and Dart. It is the last of eight action plans that have been produced for salmon rivers within Devon Area. The River Lyn Salmon Action Plan contains a description of the river catchment and highlights particular features that are relevant to the salmon population and the associated fishery. The Lyn salmon stock is judged to be meeting its Conservation Limit. However, this assessment is uncertain as it is based on an estimate of rod exploitation rate, which in itself is also uncertain.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Lyn ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fish catch statistics ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 55
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  • 12
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    Environment Agency | Exeter, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11117 | 1256 | 2013-04-06 16:10:16 | 11117 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the Rivers Avon & Erme Salmon Action Plan Consultation document produced by the Environment Agency in 2003. This document is part of a national initiative to produce action plans for the management of all the main salmon rivers of England and Wales by 2003. The aim of this plan is (i) to assess the status of the salmon stocks and fisheries of the rivers Avon and Erme - including the use of Conservation Limits as part of this process, (ii) to identify factors which may limiting stock and fishery performance and (iii) to propose remedial measures address these factors. The report pays attention on the external consultation of the Rivers Avon & Erme Salmon Action Plan (SAP). While the stocks of both rivers have exceeded their respective conservation limits occasionally in individual years, only the Erme has achieved a period of statistical compliance since 1993. It is possible that this situation is largely normal, due to the steep nature of the rivers, obstructions to migration and dependence on suitable flow conditions occurring at the right time of year. The decline of the spring-running component of the stocks has left the populations dependent on autumn flows for the success of the late running component. Actions required to improve compliance with Conservation Limits are proposed and prioritised. The urgent actions relate to the need to improve the consistency with which adequate numbers of salmon reach and utilise fully all the accessible areas of the river systems. This document is intended to be dynamic, with opportunities for review occurring at regular intervals. For example, as the science of fisheries management improves, particularly in the setting of Conservation Limits, so the targets may be altered to reflect any improved methodology.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; Rivers Avon & Erme ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fish catch statistics ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
    Repository Name: AquaDocs
    Type: monograph
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  • 13
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    Environment Agency | Cornwall, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11111 | 1256 | 2013-04-06 16:11:08 | 11111 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Plym Salmon Action Plan Final document produced by the Environment Agency in 2003. This final Salmon Action Plan (SAP) for the River Plym catchment has been produced after consideration of feedback from external consultation. It provides a list of the agreed issues and actions for the next five years to maintain and improve the River Lynher salmon stock. These issues and actions follow on from the detailed analysis of the catchment, which is presented in the River Plym SAP Consultation document.The actions presented within this final Salmon Action Plan clarify the important issues and factors currently limiting the salmon stock on the river. The resolution of these issues should ensure that a sustainable salmon population will be maintained for future generations. The main objective of the River Plym SAP therefore, is to maintain, improve and develop the River Plym salmon stocks to a sustainable level that, on the basis of historic catch records, the catchment can clearly support. The River Plym has failed to pass its conservation limit since 1996, and the consultees felt very strongly that there were three major factors limiting the salmon stock of the River Plym.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Plym ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning target
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
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  • 14
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    Environment Agency | Exeter, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11123 | 1256 | 2013-04-06 16:09:16 | 11123 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Exe Salmon Action Plan Consultation document produced by the Environment Agency in 2003. The report pays attention on the external consultation of the River Exe Salmon Action Plan (SAP). This strategy represents an entirely new approach to salmon management within the UK and introduces the concept of river-specific salmon spawning targets as a salmon management tool. The River Exe SAP follows the format of those completed for the Rivers Teign, Torridge, Taw and Dart. It is the fifth of eight action plans that will be produced for salmon rivers within Devon Area. The River Exe SAP contains a description of the river catchment and highlights particular features that are relevant to the salmon population and the associated fishery. The Exe salmon stock is judged to be meeting its Conservation Limit. However, this assessment is uncertain as it is based on an estimate of rod exploitation rate, which in itself is also uncertain. At present there is no means of accurately assessing the River Exe salmon run. In common with many other rivers, estimation of stock using catch statistics and rod exploitation rate is the model used, when direct assessment is not possible. The installation of a fish counter on the lower river, or the use of other direct counting methods, would help to provide a direct assessment of the annual run of salmon into the river. This would improve our ability to estimate the spawning escapement and hence assess compliance with the Conservation Limit.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Exe ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fish catch statistics ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
    Repository Name: AquaDocs
    Type: monograph
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  • 15
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    Environment Agency | Exeter, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11129 | 1256 | 2013-04-06 15:57:09 | 11129 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Teign Salmon Action Plan Consultation document produced by the Environment Agency in 2003. The report pays attention on the external consultation of the River Teign Salmon Action Plan (SAP). This approach to salmon management within the England and Wales introduces the concept of river-specific Conservation Limits as a method of assessing the status of the salmon stock. The River Teign Salmon Action Plan follows the format of those completed for the Rivers Torridge, Taw and Dart. It is the fourth of eight action plans that will be produced for salmon rivers within the Devon Area Fisheries, Recreation and Biodiversity Team. The River Teign SAP contains a description of the river catchment and highlights particular features that are relevant to the salmon population and the associated fishery. The Teign salmon stock is currently failing to meet its conservation limit. This failure is largely attributed to the reduction in the survival rate during the marine phase of the salmon life cycle. This is likely to constrain stocks to lower levels than have existed historically. Still further catch controls may contribute to a reduction in exploitation rates and allow stocks to recover to meet their conservation limit. Other important actions include the continuation of habitat improvement works which aim to maximise spawning habitat utilisation, spawning success, and juvenile survival and production.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Exeter ; River Teign ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fish catch statistics ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
    Repository Name: AquaDocs
    Type: monograph
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  • 16
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    Environment Agency | Exeter, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11131 | 1256 | 2013-04-06 15:56:47 | 11131 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Torridge Salmon Action Plan Final document produced by the Environment Agency in 2000. This final Salmon Action Plan (SAP) for the River Torridge catchment has been produced after consideration of feedback from external consultation. The SAP provides a list of the issues and actions which were agreed for a five-year programme to maintain and improve the River Torridge salmon stock. Some of these actions have already been delivered before finalising the SAP, but others have yet to be addressed. An attempt has been made to estimate the cost of the actions, identify possible sources of funding and the timescale under which they will be dealt with. The Torridge salmon stock has declined dramatically since the 1960s and is currently failing to meet the spawning target. The decline in the spring fish component has accounted largely for the overall decrease in stocks. The reasons for the decline are not fully understood, but the spring fish problem is recognised as a national issue. The rate of survival over the marine phase has reduced in recent years for both the grilse and multi-sea winter (MSW) components. This is undoubtedly a contributory factor, which may now constrain stocks to lower levels than have existed historically. Agricultural pollution is recognised as one of the main factors limiting freshwater production. This SAP aims to promote long term collaboration between the Agency and other interested parties in managing the River Torridge salmon stock and fisheries.
    Description: Environment Agency Archives North West
    Keywords: Fisheries ; Limnology ; Management ; England ; Exeter ; River Torridge ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
    Repository Name: AquaDocs
    Type: monograph
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  • 17
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    Environment Agency | Birmingham, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10615 | 1256 | 2013-04-03 15:24:53 | 10615 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-27
    Description: This is the Coleopteran Fauna of ERS on the river Dane, Cheshire: a survey report produced by the Environment Agency in 2003. A comprehensive survey of the Exposed Riverine Sediment (ERS) on the River Dane, Cheshire was undertaken between mid-April and mid-June 2003. 6 locations were selected and subsequently examined to determine the importance of the constituent invertebrate fauna. Appropriate sampling techniques (i.e. pitfall trapping, hand searching and excavations) were directed towards the target group (Coleoptera). All adults from the chosen taxa were identified to species level. The relative value of the fauna was assessed using species richness, conservation status, fidelity score and a site quality index.
    Description: Environment Agency Archives North West
    Description: + appendices
    Keywords: Ecology ; Limnology ; England ; Cheshire ; River Dane ; Inland waters ; Rivers ; Freshwater fishes ; Invertebrate larvae ; ERS ; Environmental assessment ; Water quality ; Species richness ; Conservation status ; Fidelity score ; Site Quality Index
    Repository Name: AquaDocs
    Type: monograph
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  • 18
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    Environment Agency | Birmingham, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10616 | 1256 | 2013-04-03 15:24:38 | 10616 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-27
    Description: This is the Visual survey ERS Dane, Weaver & Bollin Catchments produced by the Environment Agency in 2005. Visual surveys of the River Dane downstream of the confluence with the Swettenham Brook, the River Weaver, and the River Bollin catchment in the EA Northwest South area of England were undertaken between 3rd and 9th February 2005 with the aim of identifying the spatial distribution and relative quality of exposed Riverine sediments (ERS). The potential value of these ERS in terms of likely habitat quality for ERS invertebrate communities was determined by recording a suite of appropriate environmental variables. Following an initial cartographical analysis of reaches likely to contain ERS, tens of kilometres of riverbank were inspected and 67 areas of ERS were selected for detailed visual survey. Site characteristics ranged widely both between and within catchments, with habitat quality ranging from poor to very high.
    Description: Environment Agency Archives North West
    Keywords: Ecology ; Limnology ; England ; Cheshire ; River Dane ; River Weaver ; River Bollin ; Inland waters ; Rivers ; Invertebrate larvae ; ERS ; Environmental assessment ; Water quality
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    Type: monograph
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    Environment Agency | Warrington, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10994 | 1256 | 2013-03-26 13:49:13 | 10994 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-26
    Description: This is the technical report of a hydrogeological assessment of the Delamere sandsheet and environments by the Environment Agency.The overall objective of the study is to carry out Stage 3-appropriate assessment, under the EU Habitats Directive (92/43/EEC), of the influence of activities permitted by the Agency relating to groundwater on candidate Special Areas of Conservation (cSAC). The geology of Delamere area, based on published and collected information is described in Section2. Groundwater flow and water quality are described in Section 3, including sections on groundwater levels, aquifer properties, groundwater discharge and hydrogeochemisty. A water balance for the sandsheet for the period 2001-2002 is presented in Section 4, and the hydrogeological conceptual model of the area is described in Section 5. The assessment of the possible impacts of Agency-permitted groundwater abstractions on Oakmere and Abbots Moss is presented in Section 6 whilst conclusions and recommendations are given in Section 7.
    Description: Environment Agency Archives North West
    Description: + figures
    Keywords: Fisheries ; Limnology ; Management ; England ; Cheshire ; Delamere sandsheet ; Habitats Directive ; Hydrogeological environment ; Environmental assessment ; Groundwater quality ; Groundwater management ; Water table ; Aquifer
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    Type: monograph
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    Environment Agency | Cornwall, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11106 | 1256 | 2013-04-06 16:11:53 | 11106 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Fowey Salmon Action Plan Consultation document produced by the Environment Agency in 2003. The report pays attention on the external consultation of the River Fowey Salmon Action Plan (SAP). The River Fowey SAP follows the format of those completed for the Rivers Tamar, Lynher, Tavy and Camel. It is the 5th of 7 action plans that will be produced for salmon rivers managed by the Cornwall Area Fisheries, Recreation and Biodiversity Team. This strategy represents an entirely new approach to salmon management within the UK and introduces the concept of river-specific salmon spawning targets as a salmon management tool. The River Fowey SAP contains a description of the river catchment and highlights particular features that are relevant to the salmon population and the associated fishery. Notably, there are historic workings for copper and china clay and two significant potable supply reservoirs (Siblyback and Colliford) which have been constructed within the catchment during the past 35 years. The whole of the Fowey catchment is set at the highest water quality grading of RE1 and this standard is met in all reaches of the River Fowey and its tributaries.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Fowey ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality
    Repository Name: AquaDocs
    Type: monograph
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    Environment Agency | Cornwall, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11112 | 1256 | 2013-04-06 16:10:59 | 11112 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Tamar Salmon Action Plan Consultation document produced by the Environment Agency in 1998. The report pays attention on the external consultation of the River Tamar Salmon Action Plan (SAP). This strategy represents an entirely new approach to salmon management within the UK and introduces the concept of river-specific salmon spawning targets as a salmon management tool. The River Tamar was one of the premier salmon rivers in the West Country, supporting fifteen licensed estuary nets, and the second highest rod catch behind the River Exe. The River Tamar SAP contains a description of the river catchment and highlights particular features that are relevant to the salmon population and the associated fishery.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Tamar ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fish catch statistics ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
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    Environment Agency | Cornwall, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11105 | 1256 | 2013-04-06 16:12:01 | 11105 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Camel Salmon Action Plan Final document produced by the Environment Agency in 2002. This final Salmon Action Plan (SAP) for the River Camel catchment has been produced after consideration of feedback from external consultation. It provides a list of the agreed issues and actions for the next five years to maintain and improve the River Camel salmon stock. The actions presented within this Salmon Action Plan clarify the important issues and factors currently limiting the salmon stock on the river. The resolution of these issues should ensure that a sustainable salmon population will be maintained for future generations. An attempt has been made to cost these actions, identify possible sources of funding and to provide a timescale for action. This Action Plan aims to promote long term collaboration and co-operation between the Agency and other interested parties to effectively and efficiently manage the stock of salmon on the River Camel.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Camel ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
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    Environment Agency | Warrington, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10901 | 1256 | 2013-03-22 13:42:52 | 10901 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-07-01
    Description: This is the River Goyt & Etherow Crayfish Survey report from the Environment Agency held between August and November 2000. The report focuses on the need to verify the presence of the non-native American signal crayfish (Pacifastacus leniusculus) in the main River Goyt, and determine its distribution. Signal crayfish have been reported in the River Goyt after spreading from a known population centre in Hollywood End Brook, to the east of Marple Bridge. The report contains sections on results, discussion and a summary. The section on results shows maps of presence or absence of different crayfish species in River Goyt, and the Mersey/ Weaver river systems such American signal crayfish (Pacifastacus leniusculus) and European freshwater crayfish (Austopotamobius pallipes).
    Description: Environment Agency Archives North West
    Description: + 2 figures
    Keywords: Fisheries ; Limnology ; Management ; England ; Goyt ; Geographical distribution ; invasive species ; signal crayfish ; European freshwater crayfish
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    Type: monograph
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    Environment Agency | Bristol. UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10903 | 1256 | 2013-03-22 13:40:54 | 10903 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-07-01
    Description: This is the Proposed Environmental Quality Standards (EQS) for Phenol in Water prepared for the National Rivers Authority, and published by the Environment Agency in 1995. The report reviews the properties and uses of phenol, its fate, behaviour and reported concentrations in the environment and critically assesses the available data on its toxicity and bioaccumulation. The information is used to derive EQSs for the protection of fresh and saltwater life and for the abstraction of water to potable supply. Phenol is widely used as a chemical intermediate and the main sources for phenol in the environment are of anthropogenic origin. Phenol may also be formed during natural decomposition of organic material. The persistence of phenol in the aquatic environment is low with biodegradation being the main degradation process (half-lives of hours to days). Phenol is moderately toxic to aquatic organisms and its potential to bioaccumulate in aquatic organisms is low.
    Description: Environment Agency Archives North West
    Keywords: Fisheries ; Limnology ; Management ; Environmental Quality Standards (EQSs) ; Phenol ; Aquatic toxicity ; Freshwater ; Saltwater
    Repository Name: AquaDocs
    Type: monograph
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    Format: application/pdf
    Format: 100
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    Environment Agency | UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10913 | 1256 | 2013-03-22 14:06:43 | 10913 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-07-02
    Description: This is the Stillwaters monitoring programme summary results 2000 from the Environment Agency. In May 1997, a Stillwaters meeting was held to discuss the way forward in stillwaters monitoring. It decided upon the establishment of a three year rolling programme, in which three stillwaters would be monitored three times a year, every third year. During 2000, stillwaters monitored for the fourth year of the Stillwaters Monitoring Programme were Hatch Mere, Marbury Big Mere, Comber Mere, Tabley Mere, Tatton Mere and Melchett Mere. Algal, zooplankton and water chemical samples were taken on all meres. Surveys of Tabley Mere and Comber Mere continued on from last year when water quality concerns were highlighted. Continuous monitoring in Oak Mere, including water level data continued in 2000. Fish surveys were carried out in Tatton Mere and Comber Mere. Tabley Mere survey was abandoned due to the awkward bathymetry of the mere. No invertebrate samples were taken in 2000 due to lack of resources.
    Description: Environment Agency Archives North West
    Description: + appendices
    Keywords: Fisheries ; Limnology ; Management ; England ; Cheshire ; Environmental assessment ; Environmental monitoring ; Survey ; Water Quality ; Eutrophication ; Inland waters ; Pollution ; Fish surveys
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    Type: monograph
    Format: application/pdf
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    Environment Agency | Cornwall, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10923 | 1256 | 2013-03-22 13:33:59 | 10923 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-07-02
    Description: This is the Restormel Fish Counter, Annual Report 2002 produced by the Environment Agency South West Region on March 2003. The report presents the daily upstream counts of migratory salmonids recorded on the River Fowey at Restormel Weir fish counting station (SX 107 613) in 2002. Data contained within this report covers the period of the commercial migratory salmonid net buy-back scheme and the National Spring Salmon Bylaws. The fish counter at Restormel is a resistivity based system (Logie 2100A - Aquantic limited) and is installed on the weir at Restormel approximately 2 km upstream of the tidal limit. The run pattern observed for salmon and sea trout in 2002 was generally consistent with that of previous years. The upstream salmon / large sea trout count for 2002 was 1804.
    Description: Environment Agency Archives North West
    Keywords: Fisheries ; Limnology ; Management ; England ; Fowey ; Migratory species ; Fish counters ; Population dynamics
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    Environment Agency | Bristol, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10935 | 1256 | 2013-03-26 14:00:06 | 10935 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-07-02
    Description: This is the Proposed Environmental Quality Standards (EQS) for Nonylphenol in Water produced by the Environment Agency in 1997. The report reviews the properties and uses of Nonylphenol, its fate, behaviour and reported concentrations in the environment, and critically assesses available data on its toxicity and bioaccumulation. The information is used to derive EQSs for the protection of fresh and saltwater life as well as for water abstracted to potable supply.Nonylphenol (NP) is used extensively in the production of other substances such as non-ionic ethoxylate surfactants. It is through the incomplete anaerobic biodegradation of these surfactants that most nonylphenol reaches the aquatic environment in effluents, e.g. from sewage treatment works and certain manufacturing operations. It was explicitly stated by the Environment Agency that the EQS was to be derived for NP and not Nonylphenol ethoxylates. However, since NP is unlikely to be present in the aquatic environment in the absence of other nonylphenol ethoxylate (NPE) degradation by-products, the toxicity, fate and behaviour of some of these (i.e. nonylphenol mono- and diethoxylates (NP1EO and NP2EO), mono- and di-nonylphenoxy carboxylic acids (NP1EC and NP2EC) have also been considered in this report. In the aquatic environment and during sewage treatment, NPEs are rapidly degraded to NP under aerobic conditions. NP may then be either fully mineralised or may be adsorbed to sediments. Since NP cannot be biodegraded under anaerobic conditions it can accumulate in sediments to high concentrations.
    Description: Environment Agency Archives North West
    Keywords: Fisheries ; Limnology ; Management ; Environmental Quality Standard ; EQS ; Nonylphenol ; Freshwater ; Saltwater ; Toxicity ; Bioaccumulation
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    Type: monograph
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    Environment Agency | UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10933 | 1256 | 2013-03-26 14:01:39 | 10933 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-07-02
    Description: This is the Cheshire Stillwaters Summary results of 1999 produced by the Environment Agency on February 2000. The report highlights the water quality concerns of those areas surveyed by the Stillwaters Monitoring Programme: Oak Mere, Betley Mere, Petty Pool, Tabley Mere, Comber Mere and Norbury Mere. The report contains divided by area sections on physic-chemical characteristics and water chemistry, Algal and Zooplankton surveys, Discussion, Planned Surveys 2000 and survey maps. 1999 data from Petty Pool, Betley Mere, Comber Mere and Tabley Mere were classified by the trophic status of each stillwater as hyper-eutrophic/ eutrophic, and Oak Mere were classified as mesotrophic/ eutrophic.
    Description: Environment Agency Archives South West
    Description: + appendices
    Keywords: Fisheries ; Limnology ; Management ; England ; Cheshire ; Water quality ; Environmental monitoring ; phytoplankton ; zooplankton
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  charles.menza@noaa.gov | http://aquaticcommons.org/id/eprint/14878 | 403 | 2014-03-06 21:23:01 | 14878 | United States National Ocean Service
    Publication Date: 2021-06-27
    Description: This protocol was developed by the Biogeography Branch of NOAA’s Center for Coastal Monitoring and Assessment to support invasive species research by the Papahānaumokuākea Marine National Monument. The protocol’s objective is to detect Carijoa riisei and Hypnea musciformis in deepwater habitats using visual surveys by technical divers.Note: This protocol is designed to detect the presence or absence of invasive species. A distinct protocol is required to collect information on abundance and impact, or monitor changes over time.
    Keywords: Fisheries ; Management
    Repository Name: AquaDocs
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14940 | 403 | 2014-03-17 18:30:31 | 14940 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: This document contains analytical methods that detail the procedures for determining major and trace element concentrations in bivalve tissue and sediment samples collected as part of the National Status and Trends Program (NS&T) for the years 2000-2006. Previously published NOAA Technical Memoranda NOS ORCA 71 and 130 (Lauenstein and Cantillo, 1993; Lauenstein and Cantillo, 1998) detail trace element analyses for the years 1984-1992 and 1993-1996, respectively, and include ancillary, histopathology, and contaminant (organic and trace element) analytical methods.The methods presented in this document for trace element analysis were utilized by the NS&T Mussel Watch and Bioeffects Projects. The Mussel Watch Project has been monitoring contaminants in bivalves and sediment for over 20 years, and is the longest active contaminant monitoring program operating in U.S. costal waters. Approximately 280 Mussel Watch sites are monitored on biennial and decadal timescales using bivalve tissue and sediment, respectively. The Bioeffects Project applies the sediment quality approach, which uses sediment contamination measurements, toxicity tests and benthic macroinfauna quantification to characterize pollution in selected estuaries and coastal embayments. Contaminant assessment is a core function of both projects.Although only one contract laboratory was used by the NS&T Program during the specified time period, several analytical methods and instruments were employed. The specific analytical method, including instrumentation and detection limit, is noted for each measurement taken and can be found at http://NSandT.noaa.gov. The major and trace elements measured by the NS&T Program include: Al, Si, Cr, Mn, Fe, Ni, Cu, Zn, As, Se, Sn, Sb, Ag, Cd, Hg, Tl and Pb.
    Keywords: Ecology ; Fisheries ; Pollution
    Repository Name: AquaDocs
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14948 | 403 | 2014-03-14 23:02:39 | 14948 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: Gray’s Reef National Marine Sanctuary (GRNMS) is exploring the concept of a research area (RA) within its boundaries. The idea of a research area was first suggested in public scoping meetings held prior to the review of the Gray’s Reef Management Plan. An RA is a region specifically designed for conducting controlled scientific studies in the absence of confounding factors. As a result, a multidisciplinary group gathered by GRNMS was convened to consider the issue. This Research Area Working Group (RAWG) requested that a suite of analyses be conducted to evaluate the issue quantitatively. To meet this need, a novel selection procedure and geographic information system (GIS) was created to find the optimal location for an RA while balancing the needs of research and existing users. This report and its associated GIS files describe the results of the requested analyses and enable further quantitative investigation of this topic by the RAWG and GRNMS.
    Keywords: Conservation ; Fisheries ; Management
    Repository Name: AquaDocs
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14608 | 403 | 2014-02-20 18:07:42 | 14608 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: The Southern Florida Shallow-water Coral Ecosystem Mapping Implementation Plan (MIP) discusses the need to produce shallow-water (~0-40 m; 0-22 fm) benthic habitat and bathymetric maps of critical areas in southern Florida and moderate-depth (~40-200 m; 22 -109 fm) bathymetric maps for all of Florida. The ~0-40 m depth regime generally represents where most hermatypic coral species are found and where most direct impacts from pollution and coastal development occur. The plan was developed with extensive input from over 90 representatives of state regulatory and management agencies, federal agencies, universities, and non-governmental organizations involved in the conservation and management of Florida’s coral ecosystems. Southern Florida’s coral ecosystems are extensive. They extend from the Dry Tortugas in the Florida Keys as far north as St Lucie Inlet on the Atlantic Ocean coast and Tarpon Springs on the Gulf of Mexico coast. Using 10 fm (18 m) depth curves on nautical charts as a guide, southern Florida has as much as 84 percent (30,801 sq km) of 36,812 sq km of potential shallow-water (〈10 fm; 〈18 m) coral ecosystems the tropical and subtropical U.S. Moreover, southern Florida’s coral ecosystems contribute greatly to the regional economy. Coral ecosystem-related expenditures generated $4.4 billion in sales, income, and employment and created over 70,000 full-time and part-time jobs in the region during the recent 12-month periods when surveys were conducted.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  Dave.Whitall@noaa.gov | http://aquaticcommons.org/id/eprint/14936 | 403 | 2014-03-17 18:52:15 | 14936 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: Primary productivity in many coastal systems is nitrogen (N) limited; although, phytoplankton productivity may be limited by phosphorus (P) seasonally or in portions of an estuary. Increases in loading of limiting nutrients to coastal ecosystems may lead to eutrophication (Nixon 1996). Anthropogenically enhanced eutrophication includes symptoms such as loss of seagrass beds, changes in algal community composition, increased algal (phytoplankton) blooms (Richardson et al. 2001), hypoxic or anoxic events, and fish kills (Bricker et al. 2003).
    Keywords: Ecology ; Fisheries ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14935 | 403 | 2014-03-17 19:31:47 | 14935 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: The intent of this field mission was to continue ongoing efforts: (1) to spatially characterize and monitor the distribution, abundance and size of both reef fishes and conch within and around the waters of the Virgin Islands National Park (VIIS) and newly established Virgin Islands Coral Reef National Monument (VICR), (2) to correlate this information to in-situ data collected on associated habitat parameters, (3) to use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting and to establish the efficacy of those management decisions. This work is supported by the National Park Service and NOAA’s Coral Reef Conservation Program’s Caribbean Coral Reef Ecosystem Monitoring Project. The report highlights the successes of this mission.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14612 | 403 | 2014-02-20 21:49:50 | 14612 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: Reef fishes are conspicuous and essential components of coral reef ecosystems and economies of southern Florida and the United States Virgin Islands (USVI). Throughout Florida and the USVI, reef fish are under threat from a variety of anthropogenic and natural stressors including overfishing, habitat loss, and environmental changes.The South Florida/Caribbean Network (SFCN), a unit of the National Park Service (NPS), is charged with monitoring reef fishes, among other natural and cultural resources, within six parks in the South Florida - Caribbean region (Biscayne National Park, BISC; Buck Island Reef National Monument, BUIS; Dry Tortugas National Park, DRTO; Everglades National Park, EVER; Salt River Bay National Historic Park and Ecological Preserve, SARI; Virgin Islands National Park, VIIS). Monitoring data is intended for park managers who are and will continue to be asked to make decisions to balance environmental protection, fishery sustainability and park use by visitors. The range and complexity of the issues outlined above, and the need for NPS to invest in a strategy of monitoring, modeling, and management to ensure the sustainability of its precious assets, will require strategic investment in long-term, high-precision, multispecies reef fish data that increases inherent system knowledge and reduces uncertainty.The goal of this guide is to provide the framework for park managers and researchers to create or enhance a reef fish monitoring program within areas monitored by the SFCN. The framework is expected to be applicable to other areas as well, including the Florida Keys National Marine Sanctuary and Virgin Islands Coral Reef National Monument. The favored approach is characterized by an iterative process of data collection, dataset integration, sampling design analysis, and population and community assessment that evaluates resource risks associated with management policies. Using this model, a monitoring program can adapt its survey methods to increase accuracy and precision of survey estimates as new information becomes available, and adapt to the evolving needs and broadening responsibilities of park management.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14616 | 403 | 2014-02-20 22:17:15 | 14616 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: The National Centers for Coastal Ocean Science (NCCOS) of the National Oceanic and Atmospheric Administration (NOAA) is interested in developing a project to determine the health of estuaries based on the stated or desired uses of society. An estuarine use assessment could complement the National Coastal Assessment, which tracks coastal and estuarine health through a series of environmental indicators. These indicators are used to assign a “score” to each coastal region, with some indicators reflecting the ability of the region to support desired uses such as fishing and swimming. An estuarine use assessment could also provide valuable information to resource managers and other decision-makers as they face decisions about the optimal and most sustainable mix of activities in an estuary.An initial step of an estuarine use assessment would be to define and quantify the desired societal uses of the estuary. Society includes residents living near the estuary or industries relying on the estuary, seasonal residents and tourists that use the estuary on a more limited basis, and the public at-large that may use or value the estuary indirectly. The desired uses may include discrete, visible uses such as swimming, recreational or commercial fishing, and navigation. They also may extend to broader, more intangible uses such as maintaining ecological functions or aesthetic appeal. National legislation such as the Estuary Restoration Act, which promotes and funds the restoration of estuaries in the U.S., reflects the public’s desire for estuaries to retain their ecological structures and functions.This report summarizes a project carried out in 2003 that attempted to quantify the desired human uses of a specific estuary in Maine and to determine current measures of success used by coastal managers in Maine to track the ability of the estuary to support desired uses. Casco Bay was chosen as the spatial embayment for which to delineate uses, and nutrient enrichment was selected as the parameter for confirming assumptions about current measures of outcomes related to uses. The report highlights some of the challenges to completing an estuarine use assessment and offers general recommendations for addressing these challenges.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14614 | 403 | 2014-02-20 22:12:24 | 14614 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: The assessment of emerging risks in the aquatic environment is a major concern and focus of environmental science (Daughton and Ternes, 1999). One significant class of chemicals that has received relatively little attention until recently are the human use pharmaceuticals. In 2004, an estimated 2.6 billion prescriptions were written for the top 300 pharmaceuticals in the U.S. (RxList, 2005). Mellon et al. (2001) estimated that 1.4 million kg of antimicrobials are used in human medicine every year. The use of pharmaceuticals is also estimated to be on par with agrochemicals (Daughton and Ternes, 1999). Unlike agrochemicals (e.g., pesticides) which tend to be delivered to the environment in seasonal pulses, pharmaceuticals are continuously released through the use/excretion and disposal of these chemicals, which may produce the same exposure potential as truly persistent pollutants. Human use pharmaceuticals can enter the aquatic environment through a number of pathways, although the main one is thought to be via ingestion and subsequent excretion byhumans (Thomas and Hilton, 2004). Unused pharmaceuticals are typically flushed down the drain or wind up in landfills (Jones et al. 2001).
    Keywords: Ecology ; Fisheries ; Management ; Pollution
    Repository Name: AquaDocs
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    National Fisheries Resources Research Institute (NaFIRRI) | Jinja, Uganda
    In:  http://aquaticcommons.org/id/eprint/16556 | 6 | 2016-02-19 09:17:14 | 16556 | National Fisheries Resources Research Institute, Uganda
    Publication Date: 2021-07-06
    Description: Between July 2005 and February 2008, ten Catch Assessment Surveys (CASs) were conducted at 54 pre-selected fish landing sites in the Ugandan part of Lake Victoria comprising approximately 10% of all landing sites in each of the 11 districts sharing the lake. The CASs were conducted following regionally harmonised Standard Operating Procedures (SOPs). This report covers the CAS conducted in February 2008 and puts into context the trends generated by results of the previous surveys. The catch rates of Nile perch in gillnetting boats with motor/sail, reduced from 26.9 kg boat-1 day-1 in August 2007 to 22.8 kg boat-1 day-1 in February 2008. Whereas the catch rates of paddle Sesse boats remained more or less the same as in August 2007. The Nile perch catch rates of the long line fishery of the boats using motor/sail was similar, 35 and 36 kg boat-1 day-1 in August 2007 and February 2008 respectively but the catch rates of paddle Sesse boats using long lines showed some more increase from 19 to 22 kg boat (-1) day (-1). In the tilapia fishery, the catch rates of the parachute boats using gillnets showed further decrease in a row from 12.6 kg boat-1 day-1 in December 2006, 11.6 kg boat-1 day-1 in March 2007, 11.2 kg boat-1 day-1 in August 2007 and 10.0 kg boat-1 day-1 in February 2008. The overall impact of reduced catch rates in the predominant effort groups, e.g. gillnetting boats using motor/sail in the Nile perch fishery and Parachute boats using gillnets in the tilapia fishery overshadowed the increases in less dominant effort groups and resulted in the lowest monthly catch estimates recorded in the surveys conducted since 2005. Whereas there was a clear downward trend in the Nile perch catch rates of boats using gillnets, which corroborates with the information of declining stocks from the recent Acoustics surveys, the catch rates in the long line fishery remained stable and even somewhat increasing in the last four surveys. The factors that maintain high catches against reduction of fish biomass in the long line fishery and their effects on sustainability of the Nile perch fishery should be investigated further. The Mukene fishery, characterised by large fluctuations in the catch rates did not show much change in the last two surveys in August 2007 and February 2008 and the annual catch estimates showed an overall increase of 7% from 2005 to 2007. The Mukene fishery in the Ugandan waters of Lake Victoria remained a near shore fishery in which paddle Sesse boats using small seines or scoop nets were the dominant craft.
    Description: Implementation of a Fisheries Management Plan (IFMP) Project for Lake Victoria
    Keywords: Fisheries
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    Environment Agency | Bristol, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10946 | 1256 | 2013-03-26 13:59:36 | 10946 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-25
    Description: This is the Impact Assessment of ionising Radiation on Wildlife document produced by the Environment Agency in 2001. This report describes the behaviour and transport of radionuclides in the environment, considers the impact of ionising radiation on wildlife, and makes recommendations on an approach for the Impact assessment of ionising radiation on wildlife for England and Wales. The assessment approach focuses on three ecosystems representative of those considered potentially most at risk from the impact of authorised radioactive discharges, namely a coastal grassland (terrestrial ecosystem); estuarine and freshwater ecosystems. The likely scale of the impact on wildlife is also assessed in light of a preliminary analysis based on this assessment approach. The report demonstrates the behaviour and transfer of radionuclides in a number of different ecosystem types. Particular emphasis is placed on exposure pathways in those ecosystems most likely to be impacted by the authorised discharges of radioactivity within England and Wales. The use of biomarker techniques is reviewed in the report, and their application to the study of exposure to multiple contaminants is discussed.
    Description: Environment Agency Archives North West
    Description: + glossary
    Keywords: Fisheries ; Limnology ; Management ; Europe ; UK ; Pollution effects ; Radionuclides ; Biomarker ; Freshwater ; Estuarine ; Coastal grassland
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    Environment Agency | UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10987 | 1256 | 2013-03-26 13:50:46 | 10987 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-25
    Description: This is the report on Habitats Directive, the Review of Consents Stage 1 and 2 by the Environment Agency of the Rochdale Canal cSAC.The Habitats Directive has the main aim to promote the maintenance of biodiversity by defining a common framework for the conservation of wild plants and animals and habitats of community interest. The Directive establishes a European ecological network known as "Natura 2000". The network comprises Special Areas of Conservation (SAC) and Special Protection Areas (SPA). In the section on Stage 1 or Screening Process of the Habitat Directive, it is identified the likely impacts upon the Rochdale Canal of a project, plan or activities, either alone or in combination with other projects, plans or activities, and considers whether these impacts are likely to be significant. In the section on Stage 2 or Appropiate Assessment of the Habitat Directive, it is considered the impact on the integrity of the Rochdale Canal of the projects, plans or activities, either alone or in combination with other projects, plans or activities, with respect to the site’s structure and function and its conservation objectives. Additionally, where these are adverse impacts, an assessment of the potential mitigation of those impacts. The criteria used in this report to identify relevant projects, plans or activities and their impacts are water quality discharge consents, waste management licences, abstraction licences, Integration Pollution Control (IPC) and Integrated Pollution Prevention Control (IPPC) permits. Proformas, hydrogeological and GIS maps are included in the review.
    Description: Environment Agency Archives North West
    Keywords: Fisheries ; Limnology ; Management ; England ; Rochdale Canal ; Habitats Directive ; SAC ; SPA ; Screening ; Assessment ; Impacts ; Waste management ; Discharge licences ; Abstraction licences ; Pollution prevention ; Pollution control
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    Environment Agency | UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11028 | 1256 | 2013-03-26 13:42:29 | 11028 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-26
    Description: This is the River habitat survey and geomorphological evaluation of the Glaze Brook Catchment report produced by the Environmental Research and Consultancy of the University of Liverpool in 2002. The major aims of the project were to provide baseline information on river habitats in the Glaze catchment using standard River Habitat Survey (RHS) methods (sampling 25% of the catchment length) and, through the geomorphological audit, to assess the distribution and intensity of geomorphological processes, notably sediment transfer, sources and sinks. This information was then used to develop informed management recommendations. The Glaze catchment is a heavily modified watercourse of generally poor habitat quality. The most important factors contributing to the low quality of the sites are poor bank and channel features; low diversity/absence of channel vegetation; paucity of bankside trees and, to a lesser extent, a lack of channel substrate diversity. The high degree of modification relates principally to extensively resectioned banks and channels plus extensive culverting in the urban parts of the catchment.
    Description: Environment Agency Archives North West
    Description: +6 appendices
    Keywords: Fisheries ; Limnology ; Management ; England ; Glaze brook catchment ; Inland waters ; River Habitat Survey ; Habitat Quality Assessment ; Freshwater pollution ; Restoration ; Water quality
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    Environment Agency | Exeter, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11120 | 1256 | 2013-04-06 16:09:51 | 11120 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Axe Salmon Action Plan Final document produced by the Environment Agency in 2004. The River Axe Salmon Action Plan (SAP) has been produced after consideration of feedback from public consultation. The final plan provides a list of the agreed issues and actions for the next five years to maintain and improve the salmon stock of the River Axe. Efforts have been made to identify possible sources of funding, partners and timescales. It indicates how the plan will be managed, including the process for reviewing stock status, issues, actions and progress. Low marine survival is currently a major factor limiting salmon stocks throughout the United Kingdom. However, on the River Axe the freshwater environment is still the main factor limiting the recovery of the salmon stock. Most of the adults returning to the Axe at present are probably derived from hatchery reared smolts, although there has been some natural reproduction in recent years. Juvenile populations in the Yarty indicate that this is a tributary where salmon have started to re-establish a self-sustaining population. Actions to improve the quality of the freshwater environment, both in terms of water quality and sedimentation, are seen as the top priorities, and are required to allow the Axe to support a self-sustaining salmon population.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; Rivers Axe ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
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    Environment Agency | Exeter, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11121 | 1256 | 2013-04-06 16:09:43 | 11121 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Dart Salmon Action Plan Consultation document produced by the Environment Agency in 2003. The report pays attention on the external consultation of the River Dart Salmon Action Plan (SAP). This strategy represents an entirely new approach to salmon management within the UK and introduces the concept of river-specific salmon spawning targets as a salmon management tool. The north of the River Dart catchment is included in the Dartmoor candidate Special Area of Conservation (cSAC), designated under the Council EC Directive 92/43/EEC, the “Habitats Directive”. One of the conservation objectives for the cSAC is to maintain the habitat for Atlantic Salmon, Salmo Salar in favourable condition. The River Dart is an important salmon, sea trout and brown trout fishery with no significant coarse fishery. However, eels are ubiquitous throughout the catchment and are lightly exploited. The River Dart SAP contains a description of the river catchment and highlights particular features that are relevant to the salmon population and the associated fishery.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; Rivers Dart ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fish catch statistics ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
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    Environment Agency | Exeter, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11126 | 1256 | 2013-04-06 15:59:23 | 11126 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Lyn Salmon Action Plan Final document produced by the Environment Agency in 2003. This final Salmon Action Plan (SAP) for the River Lyn catchment has been produced after consideration of feedback from external consultation. It provides a list of the agreed issues and actions for the next five years to maintain and improve the River Lyn salmon stock. The actions presented within this Salmon Action Plan clarify the important issues and factors currently limiting the salmon stock on the river. The resolution of these issues should ensure that a sustainable salmon population will be maintained for future generations. An attempt has been made to cost these actions, identify possible sources of funding and to provide a timescale for action. This SAP aims also to promote long term collaboration between the Agency and other interested parties in managing the River Lyn salmon stock and fisheries.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Lyn ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
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    Environment Agency | Cornwall, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11107 | 1256 | 2013-04-06 16:11:45 | 11107 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Fowey Salmon Action Plan Final document produced by the Environment Agency in 2003. This final Salmon Action Plan (SAP) for the River Fowey catchment has been produced after consideration of feedback from external consultation. It provides a list of the agreed issues and actions for the next five years to maintain and improve the River Fowey salmon stock. The actions presented within this final Salmon Action Plan clarify the important issues and factors currently limiting the salmon stock on the river. The resolution of these issues should ensure that a sustainable salmon population will be maintained for future generations. The main objective of the Fowey SAP therefore, is to maintain, improve and develop the Fowey salmon stocks to a sustainable level that, on the basis of historic catch records, the catchment can clearly support. Although the Fowey is passing its conservation limit, the consultees felt very strongly that there were two major factors limiting the salmon stock of the River Fowey- the overgrazing of Bodmin Moor and the use of the catchment for water supply by South West Water.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Fowey ; Inland waters ; Freshwater fish ; Migratory species ; Conservation limit ; Salmon Action Plan ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
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    Environment Agency | Cornwall, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/11108 | 1256 | 2013-04-06 16:13:04 | 11108 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-28
    Description: This is the River Lynher Salmon Action Plan Consultation document produced by the Environment Agency in 1998. The report pays attention on the external consultation of the River Lynher Salmon Action Plan (SAP). The River Lynher SAP follows that for the River Tamar and is the second of seven action plans that will be produced for salmon rivers managed by the Cornwall area fisheries department. This strategy represents an entirely new approach to salmon management within the UK and introduces the concept of river-specific salmon spawning targets as a salmon management tool. The River Lynher SAP contains a description of the river catchment and highlights particular features that are relevant to the salmon population and the associated fishery. The analysis of recent and historical catches of salmon on the River Lynher from both the rod and net fisheries indicated the fishery's reliance upon post 1 June salmon. Historically, annual salmon catches (both rod and net) on the River Lynher have been found to consist of a much higher proportion of pre 1 June (spring) salmon. Evidence is provided that illustrates the extent of the decline within this stock component since the early 1980s.
    Description: Environment Agency Archives South West
    Keywords: Fisheries ; Limnology ; Management ; England ; Cornwall ; River Lynher ; Inland waters ; Freshwater fish ; Migratory species ; Salmon Action Plan ; Fish catch statistics ; Fishery data ; Fishery management ; Fishery regulations ; Nature conservation ; Water quality ; Spawning targets
    Repository Name: AquaDocs
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    NOAA/National Marine Fisheries Service | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14566 | 403 | 2014-02-20 18:26:54 | 14566 | United States National Marine Fisheries Service
    Publication Date: 2021-06-28
    Description: This report argues for greatly increased resources in terms of data collection facilities and staff to collect, process, and analyze the data, and to communicate the results, in order for NMFS to fulfill its mandate to conserve and manage marine resources. In fact, the authors of this report had great difficulty defining the "ideal" situation to which fisheries stock assessments and management should aspire. One of the primary objectives of fisheries management is to develop sustainable harvest policies that minimize the risks of overfishing both target species and associated species. This can be achieved in a wide spectrum of ways, ranging between the following two extremes. The first is to implement only simple management measures with correspondingly simple assessment demands, which will usually mean setting fishing mortality targets at relatively low levels in order to reduce the risk of unknowingly overfishing or driving ecosystems towards undesirable system states. The second is to expand existingdata collection and analysis programs to provide an adequateknowledge base that can support higher fishing mortality targets while still ensuring low risk to target and associated species and ecosystems. However, defining "adequate" is difficult, especially when scientists have not even identified all marine species, and information on catches, abundances, and life histories of many target species, and most associated species, is sparse. Increasing calls from the public, stakeholders, and the scientific community to implement ecosystem-based stock assessment and management make it even more difficult to define "adequate," especially when "ecosystem-based management" is itself not well-defined. In attempting to describe the data collection and assessment needs for the latter, the authors took a pragmatic approach, rather than trying to estimate the resources required to develop a knowledge base about the fine-scale detailed distributions, abundances, and associations of all marine species. Thus, the specified resource requirements will not meet the expectations of some stakeholders. In addition, the Stock Assessment Improvement Plan is designed to be complementary to other related plans, and therefore does not duplicate the resource requirements detailed in those plans, except as otherwise noted.
    Keywords: Biology ; Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14918 | 403 | 2014-03-10 20:45:21 | 14918 | United States National Ocean Service
    Publication Date: 2021-06-28
    Description: Coral reefs throughout their circumtropical range are declining at an accelerating rate. Recent predictions indicate that 20% of the world’s reefs have been degraded, another 24% are under imminent risk of collapse, and if current estimates hold, by 2030, 26% of the world’s reefs will be lost (Wilkinson 2004). Recent changes to these ecosystems have included losses of apex predators, reductions of important herbivorous fishes and invertebrates, and precipitous declines in living coral cover, with many reefs now dominated by macroalgae. Causes have been described in broad sweeping terms: global climate change, over-fishing and destructive fishing, land-based sources of pollution, sedimentation, hurricanes, mass bleaching events and disease. Recognition that corals can succumb to disease was first reported in the early 1970’s. Then it was a unique observation, with relatively few isolated reports until the mid 1990’s. Today disease has spread to over 150 species of coral, reported from 65 countries throughout all of the world’s tropical oceans (WCMC Global Coral Disease Database). While disease continues to increase in frequency and distribution throughout the world, definitive causes of coral diseases have remained elusive for the most part, with reef managers not sufficiently armed to combat it.
    Description: NOAA Technical Memorandum Coral Reef Conservation Program 6
    Keywords: Fisheries ; Health ; Management ; Pollution
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14610 | 403 | 2014-02-20 21:33:38 | 14610 | United States National Ocean Service
    Publication Date: 2021-06-29
    Keywords: Ecology ; Fisheries ; Management ; Pollution
    Repository Name: AquaDocs
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  Suzanne.Bricker@noaa.gov | http://aquaticcommons.org/id/eprint/14631 | 403 | 2014-02-21 20:01:27 | 14631 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Study Goals and Objectives: 1) Improve existing nutrient-related eutrophication assessment methods, updating (from early 1990s to early 2000s) the eutrophication assessment for systems included in the study with the improved method.2) Develop a human-use/socioeconomic indicator to complement the assessment indicator. The human-use indicator was developed to evaluate costs of nutrient-related degradation in coastal waters and to put the issue into a broader context relevant to the interested public and legislators as well as to scientists.3) Project objectives included collecting existing water quality data, developing an accessible database appropriate for application to a national study, and applying the assessment methods to 14 coastal systems – nine systems north of Cape Cod and five systems south. The geographical distribution of systems was used to examine potential regional differences in condition.4) The intent is to use the lessons learned in this pilot study on a national scale to guide completion of an update of the 1999 National Estuarine Eutrophication Assessment.
    Keywords: Biology ; Ecology ; Fisheries ; Management
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14630 | 403 | 2014-02-21 21:31:30 | 14630 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: A pilot study on the characteristics of crab pot buoy line movements to assess bottlenose dolphin entanglement was conducted from 19 September to 30 September 2005 in the Charleston Harbor, Charleston, South Carolina. The objectives of this study were to determine: 1) the movements of the buoy line in the water at various tidal stages, current strengths, lengths of line, and water depth, 2) if lead-core rope was a better alternative to nylon rope, 3) and if the manner of deployment of the gear affected the suspension of the line in the water and on the bottom. Diamond braided nylon (#10) rope of varying length (20 ft. – 80 ft.) were used during 31 trials and stiffened (polypropylene lead-core) rope was used in four trials. Observations of the buoy line movements were captured with an Atlantis underwater camera attached to a Digital DPC-1000 video recorder. Results from this study showed that: 1) the method used for deployment was important in keeping the buoy line from arcing or coiling, 2) little to no arcing occurred in water current velocities of 〉0.20 m/s, 3) rope lengths of ≥50 ft. deployed in 〈10 ft. of water produced waving in the water column and arcing on the bottom, 4) slack tide was a period of increased risk of entanglement for bottlenose dolphins, and 5) poly lead-core rope was not a good alternative to nylon rope unless in deep water with strong water current velocities. This pilot study produced questions that can be used for future studies on the characteristics of buoy line movements in the crab pot fishery as it relates to bottlenose dolphin entanglements.
    Keywords: Ecology ; Fisheries ; Health ; Management
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14629 | 403 | 2014-02-21 21:33:33 | 14629 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: There have been numerous studies on various mammalian species regarding vascular changes in uterine arteries elucidating the effects of parity. In equids, vascular changes of uterine arteries have been demonstrated to occur in uniparous and multiparous mares. The severity of these arteriole changes suggests a link to previous pregnancies. Differences in the number or range of pregnancies can be ascertained through microscopic evaluation of elastin deposition in the arterioles, perivascular fibrosis, and stromal cellularity. There has been little, if any, work performed on parity in the bottlenose dolphin (Tursiops truncatus). The objective of this preliminary study was to determine the feasibility of detecting similar vascular changes in the endometrium of known-aged female bottlenose dolphins to assess parity. Archived formalin fixed samples of uterus were obtained from nine bottlenose dolphins with known age and parity. Four slides were made from each sample and individually stained with four different techniques. From our small sample pool, it appears that uteri from nulliparous animals do not develop perivascular fibrosis. Parous uteri developed perivascular fibrosis and arteriolar elastosis. These changes agree with our expectations that some degeneration (elastosis) and compensation (fibrosis) occurs as a result of uterine expansion of pregnancy. The assessment of this technique for use in bottlenose dolphins would provide an important tool in the determination of the reproductive success of dolphin populations, identify individuals who are sexually mature but nulliparous, which could indicate reproductive dysfunction or increased calving intervals, and increase our knowledge on the role contaminants play in reproductive dysfunction.
    Keywords: Fisheries ; Health ; Management
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14634 | 403 | 2014-02-21 21:53:42 | 14634 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Creel and trawl surveys of Biscayne Bay were carried out in 1982-1983 to assess commercial fish and macro-invertebrate habitats and fisheries. Dredged and/or barren bottom was dramatically less productive than seagrass, algae or hard bottom areas. Low fish abundance and diversity in north Biscayne Bay appeared to be correlated with high turbidity and low seagrass abundance. Substantive increases in fish and crustacean productivity in north Biscayne Bay will occur only if seagrass communities can be re-established. Deeper dredged areas in North Bay will not likely become recolonized with seagrass even if turbidity levels are reduced. Hard bottom areas in South Bay are associated with high diversity of fish fauna and serve as nursery areas for several highly desirable species (e.g. hogfish, yellowtail snapper, lane snapper). The area between Julia Tuttle and 79th Street Causeways, which had very dense seagrass abundance, was the richest area on either North or South Biscayne Bay for juvenile fish and shrimp. This basin can serve as a model for the potential of the remainder of North Bay.
    Description: University of Miami RSMAS TR 2004-01
    Keywords: Fisheries ; Management
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  Chris.Caldow@noaa.gov | http://aquaticcommons.org/id/eprint/14633 | 403 | 2014-02-21 21:28:43 | 14633 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Since 2001, NOAA National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment’s (CCMA) Biogeography Branch (BB) has been working with federal and territorial partners to characterize, monitor, and assess the status of the marine environment across the U.S. Virgin Islands (USVI). At the request of the St. Thomas Fisherman’s Association (STFA) and NOAA Marine Debris Program, CCMA BB developed new partnerships and novel technologies to scientifically assess the threat from derelict fish traps (DFTs). Traps are the predominant gear used for finfish and lobster harvesting in St. Thomas and St. John. Natural phenomena (ground swells, hurricanes) and increasing competition for space by numerous user groups have generated concern about increasing trap loss and the possible ecological, as well as economic, ramifications. Prior to this study, there was a general lack of knowledge regarding derelict fish traps in the Caribbean. No spatially explicit information existed regarding fishing effort, abundance and distribution of derelict traps, the rate at which active traps become derelict, or areas that are prone to dereliction. Furthermore, there was only limited information regarding the impacts of derelict traps on natural resources including ghost fishing. This research identified two groups of fishing communities in the region: commercial fishing that is most active in deeper waters (30 m and greater) and an unknown number of unlicensed subsistence and or commercial fishers that fish closer to shore in shallower waters (30 m and less). In the commercial fishery there are an estimated 6,500 active traps (fish and lobster combined). Of those traps, nearly 8% (514) were reported lost during the 2008-2010 period. Causes of loss/dereliction include: movement of the traps or loss of trap markers due to entanglement of lines by passing vessels; theft; severe weather events (storms, large ground swells); intentional disposal by fishermen; traps becoming caught on various bottom structures (natural substrates, wrecks, etc.); and human error.
    Keywords: Biology ; Ecology ; Fisheries ; Health ; Management
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    NOAA/National Ocean Service | Silver Spring, MD
    In:  library@mote.org | http://aquaticcommons.org/id/eprint/14635 | 403 | 2014-02-24 19:25:34 | 14635 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Among the papers of Dr. Charles M. Breder bequeathed to the Mote Marine Laboratory by the Breder family are a series of drawings of larval fish and eggs done from 1917 through 1929. The drawings were made with pencil on half and full sheets of buff colored paper. The half sheet drawings are of larval fish, most of which are not identified. The full sheet drawings often contain comments and notes related to laboratory work on fish egg development, and made during the summer of 1929 when Breder was working in the Dry Tortugas.
    Description: Mote Technical Report No. 951. PDF (front matter + 3 pp.) does not include the drawings.
    Keywords: Education ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14637 | 403 | 2014-02-23 00:18:47 | 14637 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Coastal and marine ecosystems support diverse and important fisheries throughout the nation’s waters, hold vast storehouses of biological diversity, and provide unparalleled recreational opportunities. Some 53% of the total U.S. population live on the 17% of land in the coastal zone, and these areas become more crowded every year. Demands on coastal and marine resources arerapidly increasing, and as coastal areas become more developed, the vulnerability of human settlements to hurricanes, storm surges, and flooding events also increases.Coastal and marine environments are intrinsically linked to climate in many ways. The ocean is an important distributor of the planet’s heat, and this distribution could be strongly influenced by changes in global climate over the 21st century. Sea-level rise is projected to accelerate during the 21st century, with dramatic impacts in low-lying regions where subsidence and erosion problems already exist. Many other impacts of climate change on the oceans are difficult to project, such as the effects on ocean temperatures and precipitation patterns, although the potential consequences of various changes can be assessed to a degree. In other instances, research is demonstrating that global changes may already be significantly impacting marine ecosystems, such as the impact of increasing nitrogen on coastal waters and the direct effect of increasing carbon dioxide on coral reefs.Coastal erosion is already a widespread problem in much of the country and has significant impacts on undeveloped shorelines as well as on coastal development and infrastructure. Along the Pacific Coast, cycles of beach and cliff erosion have been linked to El Niño events that elevate average sea levels over the short term and alter storm tracks that affect erosion and wave damage along thecoastline. These impacts will be exacerbated by long-term sea-level rise. Atlantic and Gulf coastlines are especially vulnerable to long-term sea-level rise as well as any increase in the frequency of storm surges or hurricanes. Most erosion events here are the result of storms and extreme events, and the slope of these areas is so gentle that a small rise in sea level produces a large inland shiftof the shoreline. When buildings, roads and seawalls block this natural migration, the beaches and shorelines erode, threatening property and infrastructure as well as coastal ecosystems.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14636 | 403 | 2014-02-23 00:18:09 | 14636 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Southeast Bering Sea Carrying Capacity (SEBSCC, 1996–2002) was a NOAA Coastal Ocean Program project that investigated the marine ecosystem of the southeastern Bering Sea. SEBSCC was co-managed by the University of Alaska Fairbanks, NOAA Alaska Fisheries Science Center, and NOAA Pacific Marine Environmental Laboratory. Project goals were to understandthe changing physical environment and its relationship to the biota of the region, to relate that understanding to natural variations in year-class strength of walleye pollock (Theragra chalcogramma), and to improve theflow of ecosystem information to fishery managers.In addition to SEBSCC, the Inner Front study (1997–2000), supported by the National Science Foundation (Prolonged Production and Trophic Transfer to Predators: Processes at the Inner Front of the S.E. Bering Sea), was active in the southeastern Bering Sea from 1997 to 1999. The SEBSCC andInner Front studies were complementary. SEBSCC focused on the middle and outer shelf. Inner Front worked the middle and inner shelf. Collaboration between investigators in the two programs was strong, and the joint results yielded a substantially increased understanding of the regional ecosystem.SEBSCC focused on four central scientific issues: (1) How does climate variability influence the marine ecosystem of the Bering Sea? (2) What determines the timing, amount, and fate of primary and secondary production? (3) How do oceanographic conditions on the shelf influence distributions of fish and other species? (4) What limits the growth of fish populations on the eastern Bering Sea shelf? Underlying these broad questions was a narrowerfocus on walleye pollock, particularly a desire to understand ecological factors that affect year-class strength and the ability to predict the potential of a year class at the earliest possible time. The Inner Front programfocused on the role of the structural front between the well-mixed waters of the coastal domain and the two-layer system of the middle domain. Of special interest was the potential for prolonged post-spring-bloom productionat the front and its role in supporting upper trophic level organisms such as juvenile pollock and seabirds. Of concern to both programs was the role of interannual and longer-term variability in marine climates and their effectson the function of sub-arctic marine ecosystems and their ability to support upper trophic level organisms.
    Keywords: Biology ; Ecology ; Fisheries ; Management
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    Publication Date: 2021-06-30
    Description: In this report we analyze the Topic 5 report’s recommendations for reducing nitrogen losses to the Gulf ofMexico (Mitsch et al. 1999). We indicate the relative costs and cost-effectiveness of different control measures, and potential benefits within the Mississippi River Basin. For major nonpoint sources, such as agriculture, we examine both national and basin costs and benefits.Based on the Topic 2 economic analysis (Diaz and Solow 1999), the direct measurable dollar benefits to Gulf fisheries of reducing nitrogen loads from the Mississippi River Basin are very limited at best. Although restoring the ecological communities in the Gulf may be significant over the long term, we do not currently have information available to estimate the benefits of such measures to restore the Gulf’s long-term health. For these reasons, we assume that measures to reduce nitrogen losses to the Gulf will ultimately prove beneficial, and we concentrate on analyzing the cost-effectiveness of alternative reduction strategies.We recognize that important public decisions are seldom made on the basis of strict benefit–cost analysis, especially when complete benefits cannot be estimated. We look at different approaches and different levels of these approaches to identify those that are cost-effective and those that have limited undesirable secondary effects, such as reduced exports, which may result in lost market share.We concentrate on the measures highlighted in the Topic 5 report, and also are guided by the source identification information in the Topic 3 report (Goolsby et al. 1999). Nonpoint sources that are responsible for the bulk of the nitrogen receive most of our attention. We consider restrictions on nitrogen fertilizer levels, and restoration of wetlands and riparian buffers for denitrification. We also examine giving more emphasis to nitrogen control in regions contributing a greater share of the nitrogen load.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    Publication Date: 2021-06-30
    Description: The overall goal of this assessment was to evaluate the effects of nutrient-source reductions that may be implemented in the Mississippi River Basin (MRB) to reduce the problem of low oxygen conditions (hypoxia) in the nearshore Gulf of Mexico. Such source reductions would affect the quality of surface waters—streams, rivers, and reservoirs—in the drainage basin itself, as well as nearshore Gulf waters. The task group’s work was divided into addressing the effects of nutrient-source reductions on: (1) surface waters in the MRB and (2) hypoxia in the Gulf of Mexico.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14639 | 403 | 2014-02-23 00:19:20 | 14639 | United States National Ocean Service
    Publication Date: 2021-06-30
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14641 | 403 | 2014-02-24 00:14:08 | 14641 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Ths report addresses the following two questions:1) What are the loads (flux) of nutrients transported from the Mississippi-Atchafalaya River Basin to the Gulf of Mexico, and where do they come from within the basin?2) What is the relative importance of specific human activities, such as agriculture, point-source discharges, and atmospheric deposition in contributing to these loads?These questions were addressed by first estimating the flux of nutrients from the Mississippi-Atchafalaya River Basin and about 50 interior basins in the Mississippi River system using measured historical streamflow and water quality data. Annual nutrient inputs and outputs to each basin were estimated using data from the National Agricultural Statistics Service, National Atmospheric Deposition Program, and point-source data provided by the USEPA. Next, a nitrogen mass balance was developed using agricultural statistics, estimates of nutrient cycling in agricultural systems, and a geographic information system. Finally, multiple regression models were developed to estimate the relative contributions of the major input sources to the flux of nitrogen and phosphorus to the Gulfof Mexico.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14643 | 403 | 2014-02-24 00:12:08 | 14643 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Nutrient overenrichment from human activities is one of the major stresses affecting coastal ecosystems. There is increasing concern in many areas around the world that an oversupply of nutrients from multiple sources is having pervasive ecological effects on shallow coastal and estuarine areas. These effects include reduced light penetration, loss of aquatic habitat, harmfid algal blooms, a decrease in dissolved oxygen (or hypoxia), and impacts on living resources. The largest zone of oxygen-depleted coastal waters in the United States, and the entire western Atlantic Ocean, is found in the northern Gulf of Mexico on the Louisiana-Texas continental shelf. This zone is influenced by the freshwater discharge and nutrient flux of the Mississippi River system.This report describes the seasonal, interannual, and long-term variability in hypoxia in the northern Gulf of Mexico and its relationship to nutrient loading. It also documents the relative roles of natural and human-induced factors in determining the size and duration of the hypoxic zone.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14645 | 403 | 2014-02-24 00:11:18 | 14645 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: The continental shelf adjacent to the Mississippi River is a highly productive system, often referred to as the fertile fisheries crescent. This productivity is attributed to the effects of the river, especially nutrient delivery. In the later decades of the 2oth century, though, changes in the system were becoming evident. Nutrient loads were seen to be increasing and reports of hypoxia were becoming more frequent.During most recent summers, a broad area (up to 20,000 krn2) of near bottom, inner shelf waters immediately west of the Mississippi River delta becomes hypoxic (dissolved oxygen concentrations less than 2 mgll). In 1990, the Coastal Ocean Program of the National Oceanic and Atmospheric Administration initiated the Nutrient Enhanced Coastal Ocean Productivity (NECOP) study of this area to test the hypothesis that anthropogenic nutrient addition to the coastal ocean has contributed to coastal eutrophication with a significant impact on water quality. Three major goals of the study were to determine the degree to which coastal productivity in the region is enhanced by terrestrial nutrient input, to determine the impact of enhanced productivity on water quality, and to determine the fate of fixed carbon and its impact on living marineresources. The study involved 49 federal and academic scientists from 14 institutions and cost $9.7 million. Field work proceeded from 1990 through 1993 and analysis through 1996, although some analyses continue to this day.The Mississippi River system delivers, on average, 19,000 m3/s of water to the northern Gulf of Mexico. The major flood of the river system occurs in spring following snow melt in the upper drainage basin. This water reaches the Gulf of Mexico through the Mississippi River birdfootdelta and through the delta of the Atchafalaya River. Much of this water flows westward along the coast as a highly stratified coastal current, the Louisiana Coastal Current, isolated from the bottom by a strong halocline and from mid-shelf waters by a strong salinity front. This stratification maintains dissolved and particulate matter from the rivers, as well as recycled material, in a well-defined flow over the inner shelf. It also inhibits the downward mixing of oxygenated surface waters from the surface layer to the near bottom waters. This highlystratified flow is readily identifiable by its surface turbidity, as it carries much of the fine material delivered with the river discharge and resuspended by nearshore wave activity. A second significant contribution to the turbidity of the surface waters is due to phytoplankton in these waters. This turbidity reduces the solar radiation penetrating to depth through the watercolumn. These two aspects of the coastal current, isolation of the inner shelf surface waters and maintenance of a turbid surface layer, precondition the waters for the development of near bottom summer hypoxia.
    Keywords: Ecology ; Environment ; Fisheries ; Health
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14642 | 403 | 2014-02-24 00:13:08 | 14642 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: In this report we have attempted to evaluate the ecological and economic consequences of hypoxia in the northern Gulf of Mexico. Although our initial approach was to rely on published accounts, we quickly realized that the body of published literature deahng with hypoxia was limited,and we would have to conduct our own exploratory analysis of existing Gulf data, or rely on published accounts from other systems to infer possible or potential effects of hypoxia.For the economic analysis, we developed a conceptual model of how hypoxia-related impacts could affect fisheries. Our model included both supply and demand components. The supplymodel had two components: (1) a physical production function for fish or shrimp, and (2) the cost of fishing. If hypoxia causes the cost of a unit of fishing effort to change, then this will result in a shift in supply. The demand model considered how hypoxia might affect the quality of landed fish or shrimp. In particular, the market value per pound is lower for small shrimp thanfor large shrimp.Given the limitations of the ecological assessment, the shallow continental shelf area affected by hypoxia does show signs of hypoxia-related stress. While current ecological conditions are a response to a variety of stressors, the effects of hypoxia are most obvious in the benthos that experience mortality, elimination of larger long-lived species, and a shifting of productivity to nonhypoxic periods (energy pulsing). What is not known is whether hypoxia leads to higher productivity during productive periods, or simply to a reduction of productivity during oxygen-stressed periods.The economic assessment based on fisheries data, however, failed to detect effects attributable to hypoxia. Overall, fisheries landings statistics for at least the last few decades have been relatively constant. The failure to identify clear hypoxic effects in the fisheries statistics does not necessarily mean that they are absent. There are several possibilities: (1) hypoxic effects are small relative to the overall variability in the data sets evaluated; (2) the data and the power of the analyses are not adequate; and (3) currently there are no hypoxic effects on fisheries.Lack of identified hypoxic effects in available fisheries data does not imply that effects would not occur should conditions worsen. Experience with other hypoxic zones around the globe shows that both ecological and fisheries effects become progressively more severe as hypoxia increases. Several large systems around the globe have suffered serious ecological and economic consequencesfrom seasonal summertime hypoxia; most notable are the Kattegat and Black Sea. The consequences range from localized loss of catch and recruitment failure to complete system-wide loss of fishery species. If experiences in other systems are applicable to the Gulf of Mexico, thenin the face of worsening hypoxic conditions, at some point fisheries and other species will decline, perhaps precipitously.
    Keywords: Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14653 | 403 | 2014-02-26 20:06:52 | 14653 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: There is nothing mysterious about how coastal rivers, their estuaries, and their relationship with the sea all work to satisfy many of our greatest needs, including drinkable water, fish and shellfish, and soils essential for sustaining the production of food and fiber. Nor are the methods that have proved successful in the protection andrestoration of watershed health difficult to understand. It is difficult, however, to imagine how we are to survive without healthy watersheds. Each watershed alongCalifornia’s coast shows signs of increasing abuse from road construction and maintenance, livestock grazing, residential development, timber harvesting, and a dozen other human activities. In some cases whole streams have simply been wiped away.This document has been created to guide and support every person in the community, from homemaker to elected official, who wants her or his watershed to provide cleanwater, harvestable fish resources and other proof that life in the watershed cannot only be maintained but also enjoyed. It is based on years of experience with watershedprotection and restoration in California. If citizen involvement is to be effective, it must draw not only on scientific knowledge but also on an understanding of how totranslate individual views into commitments and capable group action.This guide briefly reviews the condition of California’s coastal watersheds, identifies the kinds of concerns that have led citizens to successful watershed protection efforts, explains why citizen, in addition to government, effort is essential for watershed protection and restoration to succeed, and puts in the reader’s hands both the technical and organizational “tools of the trade” in the hope that those who use this guide will be encouraged to join in efforts to make their watershed serve this and future generations better.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14650 | 403 | 2014-02-24 00:09:16 | 14650 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Over the past one hundred and fifty years, the landscape and ecosystems of the Pacific Northwest coastal region, already subject to many variable natural forces, have been profoundly affected by human activities. In virtually every coastal watershed from the Strait of Juan de Fuca to CapeMendocino, settlement, exploitation and development of resou?-ces have altered natural ecosystems. Vast, complex forests that once covered the region have been largely replaced by tree plantations or converted to non-forest conditions. Narrow coastal valleys, once filled withwetlands and braided streams that tempered storm runoff and provided salmon habitat, were drained, filled, or have otherwise been altered to create land for agriculture and other uses. Tideflats and saltmarshes in both large and small estuaries were filled for industrial, commercial,and other urban uses. Many estuaries, including that of the Columbia River, have been channeled, deepened, and jettied to provide for safe, reliable navigation. The prodigious rainfall in the region, once buffered by dense vegetation and complex river and stream habitat, now surges down sirfiplified stream channels laden with increased burdens of sediment and debris. Although these and many other changes have occurred incrementally over time and in widely separated areas, their sum can now be seen to have significantly affected the natural productivity of theregion and, as a consequence, changed the economic structure of its human communities. This activity has taken place in a region already shaped by many interacting and dynamic natural forces. Large-scale ocean circulation patterns, which vary over long time periods, determine the strength and location of currents along the coast, and thus affect conditions in the nearshoreocean and estuaries throughout the region. Periodic seasonal differences in the weather and ocean act on shorter time scales; winters are typically wet with storms from the southwest while summers tend to be dry with winds from the northwest. Some phenomena are episodic, such asEl Nifio events, which alter weather, marine habitats, and the distribution and survival of marine organisms. Other oceanic and atmospheric changes operate more slowly; over time scales of decades, centuries, and longer. Episodic geologic events also punctuate the region, such asvolcanic eruptions that discharge widespread blankets of ash, frequent minor earthquakes, and major subduction zone earthquakes each 300 to 500 years that release accumulated tectonic strain, dropping stretches of ocean shoreline, inundating estuaries and coastal valleys, and triggering landslides that reshape stream profiles. While these many natural processes have altered, sometimes dramatically, the Pacific Northwest coastal region, these same processes haveformed productive marine and coastal ecosystems, and many of the species in these systems have adapted to the variable environmental conditions of the region to ensure their long-term survival.
    Keywords: Biology ; Ecology ; Environment ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14654 | 403 | 2014-02-26 20:08:10 | 14654 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: This synthesis presents a science overview of the major forest management Issues involved in the recovery of anadromous salmonids affected by timber harvest in the Pacific Northwest and Alaska. The issues involve the components of ecosystem-based watershed management and howbest to implement them, including how to: Design buffer zones to protect fish habitat while enabling economic timber production; Implement effective Best Management Practices (BMPs) to prevent nonpoint-source pollution;Develop watershed-level procedures across property boundaries to prevent cumulative impacts; Develop restoration procedures to contribute to recovery of ecosystem processes; and Enlist support of private landowners in watershed planning, protection, and restoration.Buffer zones, BMPs, cumulative impact prevention, and restoration are essential elements of what must be a comprehensive approach to habitat protection and restoration applied at the watershed level within a larger context of resource concerns in the river basin, species status under the Endangered Species Act (ESA), and regional environmental and economic issues (Fig. ES. 1).This synthesis 1) reviews salmonid habitat requirements and potential effects of logging; 2) describes the technical foundation of forest practices and restoration; 3) analyzes current federal and non-federal forest practices; and 4) recommends required elements of comprehensive watershed management for recovery of anadromous salmonids.
    Keywords: Biology ; Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14647 | 403 | 2014-02-24 00:10:36 | 14647 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: To develop an understanding of stock structure and recruitment variation in Bering Sea pollock, the Coastal Ocean Program of the National Oceanic and Atmospheric Administration (NOAA) funded an 7-year (1991-1997),interdisciplinary project named Bering Sea Fisheries-Oceanography Coordinated Investigations (BS FOCI; Schumacher and Kendall, 1995) for which NOAA and academic researchers were selected through a competitive process(Macklin, this report). The project goals, based on recommendations from an international symposium on pollock (Aron and Balsiger, 1989) were to (1) determine stock structure in the Bering Sea and its potential relationshipto physical oceanography, and (2) examine recruitment processes in the eastern Bering Sea. Both of these have direct implication to management. An integrated set of field, laboratory, and modeling studies were establishedto accomplish these goals. To address the first goal, project objectives were to establish details of oceanic circulation relevant to larval dispersal and separation of stocks, and determine if unique chemical or genetic indicators existed for different stocks. The recruitment component of BS FOCI, addressing the second goal, focused on understanding causes of variable mortality of pollock larvae in the different habitats of the eastern Bering Sea.The emphasis of recruitment studies was to determine the dominant physical oceanographic features (turbulence, temperature, and transport) that could influence survival of pollock larvae, and investigate factors controllingfood production for the larvae. A later component contrasted juvenile habitat in three hydrographic regimes around the Pribilof Islands (Brodeur, this report).
    Keywords: Biology ; Ecology ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14649 | 403 | 2014-02-24 00:09:54 | 14649 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Seagrass ecosystems are protected under the federal "no-net-loss" policy for wetlands and form one of the mostproductive plant communities on the planet, performing important ecological functions. Seagrass beds have been recognized as a valuable resource critical to the health and function of coastal waters. Greater awareness and public education, however, is essential for conservation of this resource. Tremendous losses of this habitat have occurred as a result of development within the coastal zone. Disturbances usually kill seagrasses rapidly, and recovery is often comparatively slow. Mitigation to compensate for destruction of existing habitat usually follows when the agent of loss and responsible party are known. Compensation assumes that ecosystems can be made to order and, in essence, trades existing functional habitatfor the promise of replacement habitat. While ~lant ingse agrass is not technically complex, there is no easy way to meet the goal of maintaining or increasing seagrass acreage. Rather, the entire process of planning, planting and monitoring requires attention to detail and does notlend itself to oversimplification.
    Keywords: Biology ; Ecology ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14651 | 403 | 2014-02-24 00:08:40 | 14651 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: This report is the product of a panel of experts in the science of blooms of unicellular marine algae which can cause mass mortalities in a variety of marine organisms and cause illness and even death in humans who consume contaminated seafood. These phenomena are collectively termed harmful algal blooms or HABs for short. As a counterpart to recent assessments of the priorities forscientific research to understand the causes and behavior of HABs, this assessment addressed the management options for reducing their incidence and extent (prevention), actions that can quell or contain blooms (control), and steps to reduce the losses of resources or economic values and minimize human health risks (mitigation).This assessment is limited to an appraisal of scientific understanding, but also reflects consideration of information and perspectives provided by regional experts, agency managers and user constituencies during three regional meetings. The panel convened these meetings during the latter half of 1996 to solicit information and opinions from scientific experts, agency managers and user constituencies in Texas, Washington, and Florida. The panel's assessment limited its attention to those HABs that result in neurotoxic shellfish poisoning, paralytic shellfish poisoning, brown tides, amnesic shellfish poisoning, and aquaculture fish kills. This covers most, but certainly not all, HAB problems in the U.S.
    Keywords: Biology ; Ecology ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14657 | 403 | 2014-02-26 20:12:26 | 14657 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Professionals who are responsible for coastal environmental and natural resource planning and management have a need to become conversant with new concepts designed to provide quantitative measures of the environmental benefits of natural resources. These amenities range from beaches to wetlands to clean water and other assets that normally are not bought and sold in everyday markets.At all levels of government — from federal agencies to townships and counties — decisionmakers are being asked to account for the costs and benefits of proposed actions. To non-specialists, the tools of professional economists are often poorly understood and sometimes inappropriatefor the problem at hand. This handbook is intended to bridge this gap.The most widely used organizing tool for dealing with natural and environmental resource choices is benefit-cost analysis — it offers a convenient way to carefully identify and array, quantitatively if possible, the major costs, benefits, and consequences of a proposed policy or regulation.The major strength of benefit-cost analysis is not necessarily the predicted outcome, which depends upon assumptions and techniques, but the process itself, which forces an approach to decision-making that is based largely on rigorous and quantitative reasoning.However, a major shortfall of benefit-cost analysis has been the difficulty of quantifying both benefits and costs of actions that impact environmental assets not normally, nor even regularly, bought and sold in markets. Failure to account for these assets, to omit them from the benefit-costequation, could seriously bias decisionmaking, often to the detriment of the environment. Economists and other social scientists have put a great deal of effort into addressing this shortcoming by developing techniques to quantify these non-market benefits.The major focus of this handbook is on introducing and illustrating concepts of environmental valuation, among them Travel Cost models and Contingent Valuation. These concepts, combined with advances in natural sciences that allow us to better understand how changes in the naturalenvironment influence human behavior, aim to address some of the more serious shortcomings in the application of economic analysis to natural resource and environmental management and policy analysis.Because the handbook is intended for non-economists, it addresses basic concepts of economic value such as willingness-to-pay and other tools often used in decision making such as costeffectiveness analysis, economic impact analysis, and sustainable development. A number of regionally oriented case studies are included to illustrate the practical application of these concepts and techniques.
    Keywords: Biology ; Ecology ; Environment ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14655 | 403 | 2014-02-26 20:09:47 | 14655 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: What Are ~umulat iveE ffects?Coastal managers now recognize that many of the most serious resource degradation problems have built up gradually as the combined outcome of numerous actions and choices which alone may have had relatively minor impacts. For example, alteration of essential habitat throughwetland loss, degradation of water quality from nonpoint source pollution, and changes in salinity of estuarine waters from water diversion projects can be attributed to numerous small actions and choices. These incremental losses have broad spatial and temporal dimensions,resulting in the gradual alteration of structure and functioning of biophysical systems. In the environmental management field, the term "cumulative effects" is generally used to describe this phenomenon of changes in the environment that result from numerous, small-scale alterations.
    Keywords: Biology ; Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14660 | 403 | 2014-02-26 20:14:16 | 14660 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: The summer flounder, Paralichthys dentatus, is overexploited and is currently at very low levels of abundance. This is reflected in the compressed age structure of the population and the low catches in both commercial and recreational fisheries. Declining habitat quantity and quality may be contributing to these declines, however we lack a thorough understanding of the role of habitats in the population dynamics of this species. Stock structure is unresolved and current interpretations, depending on the technique and study area, suggest that there may be two or three spawning populations. If so, these stocks may have differing habitat requirements. In response to this lack of knowledge, this document summarizes and synthesizes the available information on summer flounder habitat in all life history stages (eggs, larvae, juveniles and adults) and identifies areas where further research is needed.Several levels of investigation were conducted in order to produce this document. First, an extensive search for summer flounder habitat information was made, whichincluded both the primary and gray literature as well as unanalyzed data. Second, state and federal fisheries biologists and resource managers in all states within theprimary range of summer flounder (Massachusetts to Florida) were interviewed along with a number of fish ecologists and summer flounder experts from the academic and private sectors. Finally, information from all sources was analyzed and synthesized to form a coherent overview.This document first presents an overview of the economic importance and current status of summer flounder (Chapter 1). It then summarizes our present state of knowledge of summer flounder distribution, life history patterns and stock identification (Chapter 2). This is followed by a synopsis of habitat requirements during each life history stage. For convenience, this is presented by general habitat as offshore eggs (Chapter 3), offshore larvae (Chapter 4), estuarine larvae (Chapter 5), estuarinejuveniles (Chapter 6), offshore juveniles (Chapter 7) and estuarine and offshore adults (Chapter 8). In several instances, previously undigested data sets are analyzed toprovide more detailed information, especially for estuarine juveniles. The information is then discussed in terms of its relevance to resource managers (Chapter 9).
    Keywords: Biology ; Ecology ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14659 | 403 | 2014-02-26 20:15:33 | 14659 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Extensive losses of coastal wetlands in the United States caused by sea-level rise, land subsidence, erosion, and coastal development have increased hterest in the creation of salt marshes within estuaries. Smooth cordgrass Spartina altemiflora is the species utilized most for salt marsh creation and restoration throughout the Atlantic and Gulf coasts of the U.S., while S. foliosa and Salicomia virginica are often used in California. Salt marshes have many valuable functions such as protecting shorelines from erosion, stabilizing deposits of dredged material, dampening flood effects, trapping water-born sediments, serving as nutrient reservoirs, acting as tertiary watertreatment systems to rid coastal waters of contaminants, serving as nurseries for many juvenile fish and shellfish species, and serving as habitat for various wildlife species(Kusler and Kentula 1989). The establishment of vegetation in itself is generally sufficient to provide the functions of erosion control, substrate stabilization, and sediment trapping. The development of other salt marsh functions, however, is more difficult to assess. For example, natural estuarine salt marshes support a wide variety of fish and shellfish, and the abundance of coastal marshes has been correlated with fisheries landings (Turner 1977, Boesch and Turner 1984). Marshes function for aquatic species by providing breeding areas, refuges from predation, and rich feeding grounds (Zimmerman and Minello 1984, Boesch and Turner 1984, Kneib 1984, 1987, Minello and Zimmerman 1991). However, the relative value of created marshes versus that of natural marshes for estuarine animals has been questioned (Carnmen 1976, Race and Christie 1982, Broome 1989, Pacific Estuarine Research Laboratory 1990, LaSalle et al. 1991, Minello and Zimmerman 1992, Zedler 1993). Restoration of all salt marsh functions is necessary to prevent habitat creation and restoration activities from having a negative impact on coastal ecosystems.
    Keywords: Ecology ; Environment ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14663 | 403 | 2014-02-24 20:07:47 | 14663 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Environmental quality indicators provide resource managers with information useful to assess coastal condition and scientifically defensible decisions. Since 1984, the National Oceanic and Atmospheric Administration (NOAA), through its National Status and Trends (NS&T) Program, has provided environmental monitoring data on chemical, physical, and biological indicators of coastal environments. The program has two major monitoring components to meet its goals. The Bioeffects Assessments Program evaluates the health of bays, estuaries, and the coastal zone around the nation using the Sediment Quality Triad technique that includes measuring sediment contaminant concentrations, sediment toxicity and benthic community structure. The Mussel Watch Program is responsible for temporal coastal monitoring of contaminant concentrations by quantifying chemicals in bivalve mollusks. The NS&T Program is committed to providing the highest quality data to meet its statutory and scientific responsibilities. Data, metadata and information products are managed within the guidance protocols and standards set forth by NOAA’s Integrated Ocean Observing System (IOOS) and the National Monitoring Network, as recommended by the 2004 Ocean Action Plan. Thus, to meet these data requirements, quality assurance protocols have been an integral part of the NS&T Program since its inception. Documentation of sampling and analytical methods is an essential part of quality assurance practices. A step-by–step summary of the Bioeffects Program’s field standard operation procedures (SOP) are presented in this manual.
    Keywords: Ecology ; Fisheries ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  Cynthia.Cooksey@noaa.gov | http://aquaticcommons.org/id/eprint/14669 | 403 | 2014-02-24 19:51:34 | 14669 | United States National Ocean Service
    Publication Date: 2021-07-01
    Keywords: Biology ; Ecology ; Fisheries ; Health ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14666 | 403 | 2014-02-26 20:27:41 | 14666 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Subsistence food items can be a health concern in rural Alaska because community members often rely on fish and wildlife resources not routinely monitored for persistent bioaccumulative contaminants and pathogens. Subsistence activities are a large part of the traditional culture, as well as a means of providing protein in the diets for Tribal members. In response to the growing concerns among Native communities, contaminant body burden and histopathological condition of chum and sockeye salmon(Oncorhynchus keta and Oncorhynchus nerka) and the shellfish cockles and softshell clams (Clinocardium nuttallii and Mya arenaria) were assessed. In the Spring of 2010, the fish and shellfish were collected from traditional subsistence harvest areas in the vicinity of Nanwalek, Port Graham, and Seldovia, AK, and were analyzed for trace metals and residues of organic contaminants routinely monitored by the NOAA National Status & Trends Program (NS&T). Additionally, the fish and shellfish were histologically characterized for the presence, prevalence and severity of tissue pathology, disease, and parasiteinfection. The fish and shellfish sampled showed low tissue contamination, and pathologic effects of the parasites and diseases were absent or minimal. Taken together, the results showed that the fish and shellfish were healthy and pose no safety concern for consumption. This study provides reliable chemistry and histopathology information for local resource managers and Alaska Native people regarding subsistence fish and shellfish use and management needs.
    Keywords: Fisheries ; Health ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14686 | 403 | 2014-02-24 19:58:40 | 14686 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: NOAA’s National Status and Trends Program (NS&T) collected oyster tissue and sediments for quantification of polycyclic aromatic hydrocarbons (PAHs) and petroleum associated metals before and after the landfall of oil from the Deepwater Horizon incident of 2010. These new pre- and post- landfall measurements were put into a historical context by comparing them to data collected in the region over three decades during Mussel Watch monitoring. Overall, the levels of PAHs in both sediment and oysters both pre- and post-landfall were within the range of historically observed values for the Gulf of Mexico. Some specific sites did have elevated PAH levels. While those locations generally correspond to areas in which oil reached coastal areas, it cannot be conclusively stated that the contamination is due to oiling from the Deepwater Horizon incident at these sites due to the survey nature of these sampling efforts. Instead, our data indicate locations along the coast where intensive investigation of hydrocarbon contamination should be undertaken. Post-spill concentrations of oil-related trace metals (V, Hg, Ni) were generally within historically observed ranges for a given site, however, nickel and vanadium were elevated at some sites including areas in Mississippi Sound and Galveston, Terrebonne, Mobile, Pensacola, and Apalachicola Bays. No oyster tissue metal body burden exceeded any of the United States Food and Drug Administration’s (FDA) shellfish permissible action levels for human consumption.
    Keywords: Ecology ; Fisheries ; Management ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  Chris.Caldow@noaa.gov | http://aquaticcommons.org/id/eprint/14688 | 403 | 2014-02-24 23:22:43 | 14688 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Scientific and anecdotal observations during recent decades have suggested that the structure and function of the coral reef ecosystems around St. John, U.S. Virgin Islands have been impacted adversely by a wide range of environmental stressors. Major stressors included the mass die-off of the long-spined sea urchin (Diadema antillarum) in the early 1980s, a series of hurricanes (David and Frederick in 1979, and Hugo in 1989), overfishing, mass mortality of Acropora species and other reef-building corals due to disease and several coral bleaching events.In response to these adverse impacts, the National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment, Biogeography Branch (CCMA-BB) collaborated with federal and territorial partners to characterize, monitor, and assess the status of the marine environment around the island from 2001 to 2012. This 13-year monitoring effort, known as the Caribbean Coral Reef Ecosystem Monitoring Project (CREM), was supported by the NOAA Coral Reef Conservation Program as part of their National Coral Reef Ecosystem Monitoring Program.This technical memorandum contains analysis of nine years of data (2001-2009) from in situ fish belt transect and benthic habitat quadrat surveys conducted in and around the Virgin Islands National Park (VIIS) and the Virgin Islands Coral Reef National Monument (VICR). The purpose of this document is to:1) Quantify spatial patterns and temporal trends in (i) benthic habitat composition and (ii) fish species abundance, size structure, biomass, and diversity;2) Provide maps showing the locations of biological surveys and broad-scale distributions of key fish and benthic species and assemblages; and3) Compare benthic habitat composition and reef fish assemblages in areas under NPS jurisdiction with those in similar areas not managed by NPS (i.e., outside of the VIIS and VICR boundaries).This report provides key information to help the St. John management community and others understand the impacts of natural and man-made perturbations on coral reef and near-shore ecosystems. It also supports ecosystem-based management efforts to conserve the region’s coral reef and related fauna while maintaining the many goods and ecological services that they offer to society.
    Keywords: Ecology ; Fisheries ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  Bryan.Costa@noaa.gov | http://aquaticcommons.org/id/eprint/14692 | 403 | 2014-02-25 19:13:29 | 14692 | United States National Ocean Service
    Publication Date: 2021-07-02
    Description: NOAA’s National Centers for Coastal Ocean Science Biogeography Branch has mapped and characterized large portions of the coral reef ecosystems inside the U.S. coastal and territorial waters, including the U.S. Caribbean. The complementary protocols used in these efforts have enabled scientists and managers to quantitatively and qualitatively compare marine ecosystems in tropical U.S. waters. The Biogeography Branch used similar protocols to generate new benthic habitat maps for Fish Bay, Coral Bay and the St. Thomas East End Reserve (STEER). While this mapping effort marks the third time thatsome of these shallow-water habitats (≤40 m) have been mapped, it is the first time that nearly 100% of the seafloor has been characterized in each of these areas. It is also the first time that high resolution imagery describing seafloor depth has been collected in each of these areas. Consequently, these datasets provide new information describing the distribution of coral reef ecosystems and serve as a spatial baseline for monitoring change in the Fish Bay, Coral Bay and the STEER.Benthic habitat maps were developed for approximately 64.3 square kilometers of seafloor in and around Fish Bay, Coral Bay and the STEER. Twenty seven percent (17.5 square kilometers) of these habitat maps describe the seafloor inside the boundaries of the STEER, the Virgin Islands National Park and the Virgin Islands Coral Reef National Monument. The remaining 73% (46.8 square kilometers) describe the seafloor outside of these MPA boundaries. These habitat maps were developed using a combination of semi-automated and manual classification methods. Habitats were interpreted from aerial photographs and LiDAR (Light Detection and Ranging) imagery. In total, 155 distinct combinations of habitat classes describing the geology and biology of the seafloor were identified from the source imagery.
    Keywords: Biology ; Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  dave.whitall@noaa.gov | http://aquaticcommons.org/id/eprint/14689 | 403 | 2014-02-24 23:14:15 | 14689 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Guánica Bay is a major estuary on the southwest coast of Puerto Rico. Significant coral reef ecosystems are present outside the bay. These valuable habitats may be impacted by transport of sediments, nutrients and contaminants from the watershed, through the bay and into the offshore waters. The National Oceanic and Atmospheric Administration’s (NOAA) National Centers for Coastal Ocean Science (NCCOS), in consultation with local and regional experts, conducted an interdisciplinary assessment of coral reef ecosystems, contaminants, sedimentation rates and nutrient distribution patterns in and around Guánica Bay. This work was conducted using many of the same protocols as ongoing monitoring work underway elsewhere in the U.S. Caribbean and has enabled comparisons among coral reef ecosystems between this study and other locations in the region.This characterization of Guánica marine ecosystems establishes benchmark conditions that can be used for comparative documentation of future change, including possible negative outcomes due to future land use change, or improvement in environmental conditions arising from management actions.This report is organized into six chapters that represent a suite of interrelated studies. Chapter 1 provides a short introduction to the study area. Chapter 2 is focused on biogeographic assessments and benthic mapping of the study area, including new surveys of fish, marine debris and reef communities on hardbottom habitats in the study area. Chapter 3 quantifies the distribution and magnitude of a suite of contaminants (e.g., heavy metals, PAHs, PCBs, pesticides) in both surface sediments and coral tissues. Chapter 4 presents results of sedimentation measurements in and outside of the bay. Chapter 5 examines the distribution of nutrients in in the bay, offshore from the bay and in the watershed. Chapter 6 is a brief summary discussion that highlights key findings of the entire suite of studies.
    Keywords: Biology ; Ecology ; Fisheries ; Management
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    Publication Date: 2021-07-02
    Description: NOAA’s National Centers for Coastal Ocean Science (NCCOS)-Center for Coastal Monitoring and Assessment’s (CCMA) Biogeography Branch, National Park Service (NPS), US Geological Survey, and the University of Hawaii used acoustic telemetry to quantify spatial patterns and habitat affinities of reef fishes around the island of St. John, US Virgin Islands. The objective of the study was to define the movements of reef fishes among habitats within and between the Virgin Islands Coral Reef National Monument (VICRNM), the Virgin Islands National Park (VIIS), and Territorial waters surrounding St. John. In order to better understand species’ habitat utilization patterns among management regimes, we deployed an array of hydroacoustic receivers and acoustically tagged reef fishes. Thirty six receivers were deployed in shallow near-shore bays and across the shelf to depths of approximately 30 m. One hundred eighty four individual fishes were tagged representing 19 species from 10 different families with VEMCO V9-2L-R64K transmitters. The array provides fish movement information at fine (e.g., day-night and 100s meters within a bay) to broad spatial and temporal scales (multiple years and 1000s meters across the shelf). The long term multi-year tracking project provides direct evidence of connectivity across habitat types in the seascape and among management units. An important finding for management was that a number of individuals moved among management units (VICRNM, VINP, Territorial waters) and several snapper moved from near-shore protected areas to offshore shelf-edge spawning aggregations. However, most individuals spent the majority of their time with VIIS and VICRNM, with only a few wide-ranging species moving outside the management units.Five species of snappers (Lutjanidae) accounted for 31% of all individuals tagged, followed by three species of grunts (Haemulidae) accounting for an additional 23% of the total. No other family had more than a single species represented in the study. Bluestripe grunt (Haemulon sciurus) comprised 22% of all individuals tagged, followed by lane snappers (Lutjanus synagris) at 21%, bar jack (Carangoides ruber) at 11%, and saucereye porgy (Calamus calamus) at 10%. The largest individual tagged was a 70 cm TL nurse shark (Ginglymostoma cirratum), followed by a 65 cm mutton snapper (Lutjanus analis), a 47 cm bar jack, and a 41 cm dog snapper (Lutjanus jocu). The smallest individuals tagged were a 19 cm blue tang (Acanthurus coeruleus) and a 19.2 cm doctorfish (Acanthurus chirurgus).Of the 40 bluestriped grunt acoustically tagged, 73% were detected on the receiver array. The average days at large (DAL) was 249 (just over 8 months), with one individual detected for 930 days (over two and a half years). Lane snapper were the next most abundant species tagged (N = 38) with 89% detected on the array. The average days at large (DAL) was 221 with one individual detected for 351 days. Seventy-one percent of the bar jacks (N = 21) were detected on the array with the average DALs at 47 days. All of the mutton snapper (N = 12) were detected on the array with an average DAL of 273 and the longest at 784. The average maximum distance travelled (MDT) was ca. 2 km with large variations among species. Grunts, snappers, jacks, and porgies showed the greatest movements. Among all individuals across species, there was a positive and significant correlation between size of individuals and MDT and between DAL and MDT.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14700 | 403 | 2014-02-26 21:20:56 | 14700 | United States National Ocean Service
    Publication Date: 2021-07-02
    Description: The Tortugas Integrated Biogeographic Assessment presents a unique analysis of demographic changes in living resource populations, as well as societal and socioeconomic benefits that resulted from the Tortugas Ecological Reserves during the first five years after their implementation. In 2001, state and federal agencies established two no-take reserves within the region as part of the Florida Keys National Marine Sanctuary. The northern reserve (Tortugas Ecological Reserve North) was established adjacent to the DryTortugas National Park, which was first declared a national monument in 1935. The reserves were designed to protect a healthy coral reef ecosystem that supports diverse faunal assemblages and fisheries, serves as important spawning grounds for groupers and snappers, and includes essential feeding and breeding habitats for seabirds. The unique ecological qualities of the Tortugas region were recognized as far back as 1850, and it remains an important ecosystem and research area today.The two main goals of the Tortugas Ecological Reserve Integrated Ecological Assessment were: 1) to determineif demographic changes such as increases in abundance, average size and spawning potential of exploited populations occurred in the Tortugas region after reserve implementation; and 2) whether short-term economic losses occurred to fishers displaced by the reserve. This project utilized a biogeographic approach in which information on the physical features (i.e., habitat) and oceanographic patterns were first used to determine the spatial distribution of selected fish populations within and outside the Tortugas Ecological Reserve. Before-and-after reserve implementation comparisons of selected fish populations were then conducted to determine if demographic changes occurred in reef fish assemblages. These comparisonswere done for the Tortugas region and also for a subset of available habitats within the Tortugas Ecological Reserve Study Area. Social and economic impacts of the reserves were determined through: 1) analyses of commercial landings and revenues from fishers, operating in the Tortugas region before and after reserve implementation and 2) surveys of recreational tour guides. Analyses of the commercial landings and revenues excluded areas inside Dry Tortugas National Park because commercial fishing has been prohibitedwithin park boundaries since 1992. Key findings and outcomes of this integrated ecological assessment areorganized by chapter and listed below.
    Keywords: Conservation ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14701 | 403 | 2014-02-26 01:05:46 | 14701 | United States National Ocean Service
    Publication Date: 2021-07-02
    Description: Digital maps of the coral reef ecosystem (〈~30m deep) of Majuro Atoll, Republic of the Marshall Islands, were created through visual interpretation of remote sensing imagery. Digital Globe’s Quickbird II satellite images were acquired between 2004 and 2006 and georeferenced to within 1.6 m of their true positions. Reef ecosystem features were digitized directly into a GIS at a display scale of 1:4000 using a minimum feature size of 1000 square meters. Benthic features were categorized according to a classification scheme with attributes including zone (location, such as lagoon or forereef, etc.), structure (bottom type, such as sand or patch reef, etc.) and percent hard bottom. Ground validation of habitat features was conducted at 311 sites in 2009. Resulting maps consisted of 1829 features covering 366 square kilometers. Results demonstrate that reef zones occurred in a typical progression of narrow bands from offshore, though forereef, reef flat, shoreline, land, backreef, and lagoon habitats. Lagoon was the largest zone mapped and covered nearly 80% of the atoll, although much of it was too deep to have structures identified from the satellite imagery. Dominant habitat structures by area were pavement and aggregate reef, which covered 29% and 18% of the mapped structures, respectively. Based on the number of features, individual and aggregated patch reefs comprised over 40% of the features mapped. Products include GIS based maps, field videos and pictures, satellite imagery, PDF atlas, and this summary report. Maps and associated data can be used to support science and management activities on Majuro reef ecosystems including inventory, monitoring, conservation, and sustainable development applications.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  Chris.Caldow@noaa.gov | http://aquaticcommons.org/id/eprint/14706 | 403 | 2014-02-26 01:08:31 | 14706 | United States National Ocean Service
    Publication Date: 2021-07-02
    Description: This report provides baseline biological data on fishes, corals and habitats in Coral and Fish Bays, St. John, USVI. A similar report with data on nutrients and contaminants in the same bays is planned to be completed in 2013.Data from NOAA’s long-term Caribbean Coral Reef Ecosystem Monitoring program was compiled to provide a baseline assessment of corals, fishes and habitats from 2001 to 2010, data needed to assess the impacts of erosion control projects installed from 2010 to 2011. The baseline data supplement other information collected as part of the USVI Watershed Stabilization Project, a project funded by the American Recovery and Reinvestment Act of 2009 and distributed through the NOAA Restoration Center, but uses data which is not within the scope of ARRA funded work.We present data on 16 ecological indicators of fishes, corals and habitats. These indicators were chosen because of their sensitivity to changes in water quality noted in the scientific literature (e.g., Rogers 1990, Larsen and Webb 2009). We report long-term averages and corresponding standard errors, plot annual averages, map indicator values and list inventories of coral and fish species identifiedamong surveys. Similar data will be needed in the future to make rigorous comparisons and determine the magnitude of any impacts from watershed stabilization.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  Bryan.Costa@noaa.gov | http://aquaticcommons.org/id/eprint/14708 | 403 | 2014-02-26 00:43:35 | 14708 | United States National Ocean Service
    Publication Date: 2021-07-02
    Description: The primary objective of this study was to predict the distribution of mesophotic hard corals in the Au‘au Channel in the Main Hawaiian Islands (MHI). Mesophotic hard corals are light-dependent corals adapted to the low light conditions at approximately 30 to 150 m in depth. Several physical factors potentially influence their spatial distribution, including aragonite saturation, alkalinity, pH, currents, water temperature, hard substrate availability and the availability of light at depth. Mesophotic corals and mesophotic coral ecosystems (MCEs) have increasingly been the subject of scientific study because they are being threatened by a growing number of anthropogenic stressors. They are the focus of this spatial modeling effort because the Hawaiian Islands Humpback Whale National Marine Sanctuary (HIHWNMS) is exploring the expansion of its scope—beyond the protection of the North Pacific Humpback Whale (Megaptera novaeangliae)—to include the conservation and management of these ecosystem components. The present study helps to address this need by examining the distribution of mesophotic corals in the Au‘au Channel region. This area is located between the islands of Maui, Lanai, Molokai and Kahoolawe, and includes parts of the Kealaikahiki, Alalākeiki and Kalohi Channels. It is unique, not only in terms of its geology, but also in terms of its physical oceanography and local weather patterns. Several physical conditions make it an ideal place for mesophotic hard corals, including consistently good water quality and clarity because it is flushed by tidal currents semi-diurnally; it has low amounts of rainfall and sediment run-off from the nearby land; and it is largely protected from seasonally strong wind and wave energy. Combined, these oceanographic and weather conditions create patches of comparatively warm, calm, clear waters that remain relatively stable through time.Freely available Maximum Entropy modeling software (MaxEnt 3.3.3e) was used to create four separate maps of predicted habitat suitability for: (1) all mesophotic hard corals combined, (2) Leptoseris, (3) Montipora and (4) Porites genera. MaxEnt works by analyzing the distribution of environmental variables where species are present, so it can find other areas that meet all of the same environmental constraints. Several steps (Figure 0.1) were required to produce and validate four ensemble predictive models (i.e., models with 10 replicates each). Approximately 2,000 georeferenced records containing information about mesophotic coral occurrence and 34 environmental predictors describing the seafloor’s depth, vertical structure, available light, surface temperature, currents and distance from shoreline at three spatial scales were used to train MaxEnt. Fifty percent of the 1,989 records were randomly chosen and set aside to assess each model replicate’s performance using Receiver Operating Characteristic (ROC), Area Under the Curve (AUC) values. An additional 1,646 records were also randomly chosen and set aside to independently assess the predictive accuracy of the four ensemble models. Suitability thresholds for these models (denoting where corals were predicted to be present/absent) were chosen by finding where the maximum number of correctly predicted presence and absence records intersected on each ROC curve. Permutation importance and jackknife analysis were used to quantify the contribution of each environmental variable to the four ensemble models.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  Chris.Caldow@noaa.gov | http://aquaticcommons.org/id/eprint/14709 | 403 | 2014-02-24 20:22:16 | 14709 | United States National Ocean Service
    Publication Date: 2021-07-02
    Description: This report describes the creation and assessment of benthic habitat maps for shallow-water (〈30m) marine environments of the Guánica/Parguera and Finca Belvedere Natural Reserve in southwest Puerto Rico. The objective was to provide spatially-explicit information on the habitat types, biological cover and live coral cover of the region’s coral reef ecosystem. These fine-scale habitat maps, generated by interpretation of 2010 satellite imagery, provide an update to NOAA’s previous digital maps of the U.S. Caribbean (Kendall et al., 2001) for these areas. Updated shallow-water benthic habitat maps for the Guánica/Parguera region are timely in light of ongoing restoration efforts in the Guánica Bay watershed. The bay is served directly by one river, the Rio Loco, which flows intermittently and more frequently during the rainy season. The watershed has gone through a series of manipulations and alterations in past decades, mainly associated with agricultural practices, including irrigationsystems, in the upper watershed. The Guánica Lagoon, previously situated to the north of the bay, was historically the largest freshwater lagoon in Puerto Rico and served as a natural filter and sediment sink prior to the discharge of the Rio Loco into the Bay. Following alterations by the Southwest Water Project in the 1950s, the Lagoon’s adjacent wetland system was ditched and drained; no longer filtering and trapping sediment from the Rio Loco. Land use in the Guánica Bay/Rio Loco watershed has also gone through several changes (CWP,2008). Similar to much of Puerto Rico, the area was largely deforested for sugar cane cultivation in the 1800s, although reforestation of some areas occurred following the cessation of sugar cane production (Warne et al., 2005). The northern area of the watershed is generally mountainous and is characterized by a mix of forested and agricultural lands, particularly coffee plantations. Closer to the coast, the Lajas Valley Agricultural Reserve extends north of Guánica Bay to the southwest corner of the island. The land use practices and watershed changes outlined above have resulted in large amounts of sediment being distributed in the Rio Loco river valley (CWP, 2008). Storm events and seasonal flooding also transport large amounts of sediment to the coastal waters. The threats of upstream watershed practices to coral reefs and the nearshore marine environment have been gaining recognition. Guánica Bay, and the adjacent marinewaters, has been identified as a “management priority area” by NOAA’s Coral Reef Conservation Program (CRCP, 2012). In a recent Guánica Bay watershed management plan, several critical issues were outlined in regards to land-based sources of pollution (LBSP; CWP, 2008). These include: upland erosion from coffee agriculture, filling of reservoirs with sediment, in-stream channel erosion, loss of historical Guánica lagoon, legacy contaminants and sewage treatment (CWP, 2008). The plan recommended several management actionsthat could be taken to reduce impacts of LBSP, which form the basis of Guánica watershed restoration efforts.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14760 | 403 | 2014-02-26 21:17:06 | 14760 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: The Chesapeake Bay is the largest estuary in theUnited States. It is a unique and valuable national treasurebecause of its ecological, recreational, economicand cultural benefits. The problems facing the Bay arewell known and extensively documented, and are largelyrelated to human uses of the watershed and resourceswithin the Bay. Over the past several decades as theorigins of the Chesapeake’s problems became clear, citizensgroups and Federal, State, and local governmentshave entered into agreements and worked together torestore the Bay’s productivity and ecological health.In May 2010, President Barack Obama signed ExecutiveOrder number 13508 that tasked a team of Federalagencies to develop a way forward in the protectionand restoration of the Chesapeake watershed. Successof both State and Federal efforts will depend on havingrelevant, sound information regarding the ecology andfunction of the system as the basis of management anddecision making. In response to the executive order, theNational Oceanic and Atmospheric Administration’sNational Centers for Coastal Ocean Science (NCCOS)has compiled an overview of its research in ChesapeakeBay watershed.NCCOS has a long history of Chesapeake Bay research,investigating the causes and consequences of changesthroughout the watershed’s ecosystems. This documentpresents a cross section of research results that have advanced the understanding of the structure and functionof the Chesapeake and enabled the accurate and timelyprediction of events with the potential to impact bothhuman communities and ecosystems. There are three main focus areas: changes in land use patterns in the watershed and the related impacts on contaminant and pathogen distribution and concentrations; nutrient inputs and algal bloom events; and habitat use and life history patterns of species in the watershed.Land use changes in the Chesapeake Bay watershed have dramatically changed how the system functions. Acomparison of several subsystems within the Bay drainageshas shown that water quality is directly related to land use and how the land use affects ecosystem health of the rivers and streams that enter the Chesapeake Bay. Across the Chesapeake as a whole, the rivers that drain developed areas, such as the Potomac and James rivers, tend to have much more highly contaminated sediments than does the mainstem of the Bay itself. In addition to what might be considered traditional contaminants, such as hydrocarbons, new contaminants are appearing in measurable amounts. At fourteen sites studied in the Bay, thirteen different pharmaceuticals were detected. The impact of pharmaceuticals on organisms and the people who eat them is still unknown. The effects of water borne infections on people and marine life are known, however, and the exposure to certain bacteria is a significant health risk. A model is now available that predicts the likelihood of occurrence of a strain of bacteria known as Vibrio vulnificus throughout Bay waters.
    Keywords: Conservation ; Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14763 | 403 | 2014-02-26 21:13:49 | 14763 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: This baseline assessment of Jobos Bay and surrounding marine ecosystems consists of a two part series. The first report (Zitello et al., 2008) described the characteristics of the Bay and its watershed, including modeling work related to nutrients and sediment fluxes, based on existing data. The second portion of this assessment, presented in this document, presents the results of new field studies conducted to fill data gaps identified in previous studies, to provide a more complete characterization of Jobos Bay and the surrounding coral reef ecosystems. Specifically, the objective was to establish baseline values for the distribution of habitats, nutrients, contaminants, fi sh, and benthic communities. This baseline assessment is the first step in evaluating the effectiveness in changes in best management practices in the watershed.This baseline assessment is part of the Conservation Effects Assessment Project (CEAP), which is a multi-agency effort to quantify the environmental benefits of conservation practices used by agricultural producers participating in selected U.S. Department of Agriculture (USDA) conservation programs. Partners in the CEAP Jobos Bay Special Emphasis Watershed (SEW) included USDA’s Agricultural Research Service (ARS) and the Natural Resources Conservation Service (NRCS), National Oceanic and Atmospheric Administration (NOAA) and the Government of Puerto Rico. The project originated from an on-going collaboration between USDA and NOAA on the U.S. Coral Reef Task Force. The Jobos Bay watershed was chosen because the predominant land use is agriculture, including agricultural lands adjacent to the Jobos Bay National Estuarine Research Reserve (JBNERR or Reserve), one of NOAA’s 26 National Estuarine Research Reserves (NERR).This report is organized into six chapters that represent a suite of interrelated studies. Chapter 1 provides a short introduction to Jobos Bay, including the land use and hydrology of the watershed. Chapter 2 is focused on benthic mapping and provides the methods and results of newly created benthic maps for Jobos Bay and the surrounding coral reef ecosystem. Chapter 3 presents the results of new surveys of fish, marine debris, and reef communities of the system. Chapter 4 is focused on the distribution of chemical contaminants in sediments within the Bay and corals outside of the Bay. Chapter 5 focuses on quantifying nutrient and pesticide concentrations in the surface waters at the Reserve’s System-Wide Monitoring Program (SWMP) sites. Chapter 6 is a brief summary discussion that highlights key findings of the entire suite of studies.
    Keywords: Biology ; Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14765 | 403 | 2014-02-27 19:07:53 | 14765 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: A baseline environmental characterization of the inner Kachemak Bay, Alaska was conducted using standardized National Status and Trends Bioeffects Program methods. Three sites near the village of Port Graham were also sampled for comparison. Concentrations of over 120 organic and metallic contaminants were analyzed. Ambient toxicity was assessed using two bioassays. A detailed benthiccommunity condition assessment was performed. Habitat parameters (e.g. depth, salinity, temperature, dissolved oxygen, sediment grain size, and organic carbon content) that influence species and contaminant distribution were also measured at each sampling site. The following is the synopsis of findings• Sediments were mostly mixed silt and sand with pockets of muddy zones. Organic compounds (PAHs, DDTs, PCBs, chlorinated pesticides) were detected throughout the bay but at relatively low concentrations. With some exceptions, metals concentrations were relatively low and probablyreflect the input of glacial runoff.• Homer Harbor had elevated concentrations of metallic and organic contaminants. Concentrations of organic contaminants measured were five to ten times higher in the harbor sites than in the open bay sites. Tributyltin was elevated in Homer Harbor relative to the other areas.• There was no evidence of residual PAHs attributable to oil spills, outside of local input in the confines of the harbor.• The benthic community is very diverse. Specific community assemblages were distributed based on depth and water clarity. Species richness and diversity was lower in the eastern end of the bay in the vicinity of the Fox River input. Abundance was also generally lower in the easternportion of the study area, and in the intertidal areas near Homer. The eastern portions of the bay are stressed by the sediment load from glacial meltwater.• Significant toxicity was virtually absent.• The benthic fauna at Port Graham contained a significant number of species not found in Kachemak Bay.• Selected metal concentrations were elevated at Port Graham relative to Kachemak Bay, probably due to local geology. Organic contaminants were elevated at a site south of the village.
    Keywords: Biology ; Ecology ; Fisheries ; Management ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14777 | 403 | 2014-02-27 19:44:19 | 14777 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: This report examines the marine biogeography of the Samoan Archipelago (~14º S latitude along the international date-line) with a focus on regional ocean climate, connectivity among islands due to larval transport, distributions ofreef fish and coral communities, and the extent of existing marine protected areas. Management decisions and prior assessments in the archipelago have typically been split along the international political boundary between theislands of Samoa and those of American Samoa despite their close proximity and shared resources. A key goal in this assessment was to compile data from both jurisdictions and to conduct the characterization across the entirearchipelago. The report builds upon earlier assessmentsby re-analyzing and interpreting many pre-existing datasets, adding more recent biogeographic data sources, and by combining earlier findings into a multidisciplinarysummary of marine biogeography.The assessment is divided into 5 chapters and supporting appendices. Each chapter was written and reviewed in collaboration with subject matter specialists and local experts. In Chapter 1, a short introduction to the overall scope and approach of the report is provided. In Chapter 2, regional ocean climate is characterized using remote sensing datasets and discussed in the context of local observations. In Chapter 3, regional ocean currents and transport of coral and fish larvae are investigated among the islands of the archipelago and surrounding island nations. In Chapter 4, distinct reef fish and coral communities across the archipelago are quantified on the basis of overall biodiversity, abundance, and community structure. In Chapter 5, the existing network of MPAs in American Samoa is evaluated based on the habitats, reef fish, and coral communities that are encompassed. Appendices provide analytical details omitted from some chapters for brevity as well as supplemental datasets needed as inputs for the main chapters in the assessment. Appendices include an inventory of regional seamounts, a description of shore to shelf edge benthic maps produced forTutuila, analytical details of reef fish and coral datasets, and supplemental information on the many marineprotected areas in American Samoa.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Ocean Service/Office of National Marine Sanctuary | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14768 | 403 | 2021-02-27 20:55:23 | 14768 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: The Monitor National Marine Sanctuary (MNMS) was the nation’s first sanctuary, originally established in 1975 to protect the famous civil war ironclad shipwreck, the USS Monitor. Since 2008, sanctuary sponsored archeological research has branched out to include historically significant U-boats and World War II shipwrecks within the larger Graveyard of the Atlantic off the coast of North Carolina. These shipwrecks are not only important for their cultural value, but also as habitat for a wide diversity of fishes, invertebrates and algal species. Additionally, due to their unique location within an important area for biological productivity, the sanctuary and other culturally valuable shipwrecks within the Graveyard of the Atlantic are potential sites for examining community change. For this reason, from June 8-30, 2010, biological and ecological investigations were conducted at four World War II shipwrecks (Keshena, City of Atlanta, Dixie Arrow, EM Clark), as part of the MNMS 2010 Battle of the Atlantic (BOTA) research project. At each shipwreck site, fish community surveys were conducted and benthic photo-quadrats were collected to characterize the mobile conspicuous fish, smaller prey fish, and sessile invertebrate and algal communities. In addition, temperature sensors were placed at all four shipwrecks previously mentioned, as well as an additional shipwreck, the Manuela. The data, which establishes a baseline condition to use in future assessments, suggest strong differences in both the fish and benthic communities among the surveyed shipwrecks based on the oceanographic zone (depth). In order to establish these shipwrecks as sites for detecting community change it is suggested that a subset of locations across the shelf be selected and repeatedly sampled over time. In order to reduce variability within sites for both the benthic and fish communities, a significant number of surveys should be conducted at each location. This sampling strategy will account for the natural differences in community structure that exist across the shelf due to the oceanographic regime, and allow robust statistical analyses of community differences over time.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14793 | 403 | 2014-02-27 19:58:45 | 14793 | United States National Ocean Service
    Publication Date: 2021-06-25
    Description: This technical memorandum describes a developing project under the direction of NOAA’s Biogeography Branch in consultation with the National Park Service and US Geological Survey to understand and quantify spatial patterns and habitat affinities of reef fishes in the US Virgin Islands. The purpose of this report is to describe and disseminate the initial results from the project and to share information on the location of acoustic receivers and species electronic tag ID codes. The Virgin Islands Coral Reef National Monument (VICRNM), adjacent to Virgin Islands National Park (VIIS), was established by Executive Order in 2000, but resources within the monument are poorly documented and the degree of connectivity to VIIS is unknown. Whereas, VICRNM was established with full protection from resource exploitation, VIIS has incurred resource harvest by fishers since 1956 as allowed in its enabling legislation. Large changes in local reef communities have occurred over the past several decades, in part due to overexploitation. In order to better understand the habitat utilization patterns and movement of fishes among management regimes and areas open to fishing around St, John, an array of hydroacoustic receivers was deployed while a variety of reef fish species were acoustically tagged. In July 2006, nine receivers with a detection range of ca. 350 m were deployed in Lameshur Bay on the south shore of St. John, within VIIS. Receivers were located adjacent to reefs and in seagrass beds, inshore and offshore of these reefs. It was found that lane snappers and bluestriped grunts showed diel movement from reef habitats during daytime hours to offshore seagrass bed at night. Timing of migrations was highly predictable and coincided with changes in sunrise and sunset over the course of the year. Fish associated with reefs that did not have adjacent seagrass beds made more extensive movements than those fishes associated with reefs that had adjacent seagrass habitats. In April 2007, 21 additional receivers were deployed along much of the south shore of St. John (ca. 20 km of shoreline). This current array will address broader-scale movement among management units and examine the potential benefits of the VICRNM to provide adult “spillover” into VIIS and adjacent harvested areas. The results from this work will aid in defining fine to moderate spatial scales of reef fish habitat affinities and in designing and evaluating marine protected areas.
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14798 | 403 | 2014-02-27 19:52:46 | 14798 | United States National Ocean Service
    Publication Date: 2021-06-25
    Description: The primary objective of this project, “the Assessment of Existing Information on Atlantic Coastal Fish Habitat”, is to inform conservation planning for the Atlantic Coastal Fish Habitat Partnership (ACFHP). ACFHP is recognized as a Partnership by the National Fish Habitat Action Plan (NFHAP), whose overall mission is to protect, restore, and enhance the nation’s fish and aquatic communities through partnerships that foster fish habitat conservation.This project is a cooperative effort of NOAA/NOS Center for Coastal Monitoring and Assessment (CCMA) Biogeography Branch and ACFHP. The Assessment includes three components; 1. a representative bibliographic and assessment database, 2. a Geographical Information System (GIS) spatial framework, and 3. a summary document with description of methods, analyses of habitat assessment information, and recommendations for further work.The spatial bibliography was created by linking the bibliographic table developed in Microsoft Excel and exported to SQL Server, with the spatial framework developed in ArcGIS and exported to GoogleMaps. The bibliography is a comprehensive, searchable database of over 500 selected documents and data sources on Atlantic coastal fish species and habitats. Key information captured for each entry includes basic bibliographic data, spatial footprint (e.g. waterbody or watershed), species and habitats covered, and electronic availability. Information on habitat condition indicators, threats, and conservation recommendations are extracted from each entry and recorded in a separate linked table.The spatial framework is a functional digital map based on polygon layers of watersheds, estuarine and marine waterbodies derived from NOAA’s Coastal Assessment Framework, MMS/NOAA’s Multipurpose Marine Cadastre, and other sources, providing spatial reference for all of the documents cited in the bibliography.Together, the bibliography and assessment tables and their spatial framework provide a powerful tool to query and assess available information through a publicly available web interface. They were designed to support the development of priorities for ACFHP’s conservation efforts within a geographic area extending from Maine to Florida, and from coastal watersheds seaward to the edge of the continental shelf. The Atlantic Coastal Fish Habitat Partnership has made initial use of the Assessment of Existing Information. Though it has not yet applied the AEI in a systematic or structured manner, it expects to find further uses as the draft conservation strategic plan is refined, and as regional action plans are developed. It also provides a means to move beyond an “assessment of existing information” towards an “assessment of fish habitat”, and is being applied towards the National Fish Habitat Action Plan (NFHAP) 2010 Assessment. Beyond the scope of the current project, there may be application to broader initiatives such as Integrated Ecosystem Assessments (IEAs), Ecosystem Based Management (EBM), and Marine Spatial Planning (MSP).
    Keywords: Ecology ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14806 | 403 | 2014-02-27 20:18:43 | 14806 | United States National Ocean Service
    Publication Date: 2021-06-25
    Description: Since the 1940s, portions of the Island of Vieques, Puerto Rico have been used by the United States Navy (USN) as an ammunition support detachment and bombing and maneuver training range. In April 2001, the USN began phasing out military activities on the island and transferring military property to the U.S. Department of the Interior, the Municipality of Vieques, and the Puerto Rico Conservation Trust. A small number of studies have been commissioned by the USN in the past few decades to assess selected components of the coral reef ecosystem surrounding the island; however, these studies were generally of limited geographic scope and short duration. The National Oceanic and Atmospheric Administration’s (NOAA) National Centers for Coastal Ocean Science (NCCOS), in consultation with NOAA’s Office of Response and Restoration (OR&R) and other local and regional experts, conducted a more comprehensive characterization of coral reef ecosystems, contaminants, and nutrient distribution patterns around Vieques. This work was conducted using many of the same protocols as ongoing monitoring work underway elsewhere in the U.S. Caribbean and has enabled comparisons among coral reef ecosystems in Vieques and other locations in the region.This characterization of Vieques’ marine ecosystems consists of a two part series. First, available information on reefs, fish, birds, seagrasses, turtles, mangroves, climate, geology, currents, and human uses from previous studies was gathered and integrated into a single document comprising Part I of this two part series (Bauer et al. 2008). For Part II of the series, presented in this document, new field studies were conducted to fill data gaps identified in previous studies, to provide an island-wide characterization, and to establish baseline values for the distribution of habitats, nutrients, contaminants, fish, and benthic communities. An important objective underlying this suite of studies was to quantify any differences in the marine areas adjacent to the former and current land-use zoning around Vieques. Specifically of interest was the possibility that either Naval (e.g., practice bombing, munitions storage) or civilian activities (e.g., sewage pollutants, overfishing) could have a negative impact on adjacent marine resources. Measuring conditions at this time and so recently after the land transfer was essential because present conditions are likely to be reflective of past land-use practices. In addition, the assessment will establish benchmark conditions that can be influenced by the potentially dramatic future changes in land-use practices as Vieques considers its development.This report is organized into seven chapters that represent a suite of interrelated studies. Chapter 1 provides a short introduction to the island setting, the former and current land-use zoning, and how the land zoning was used to spatially stratify much of the sampling. Chapter 2 is focused on benthic mapping and provides the methods, accuracy assessment, and results of newly created benthic maps for Vieques. Chapter 3 presents the results of new surveys of fish, marine debris, and reef communities on hardbottom habitats around the island. Chapter 4 presents results of flora and fauna surveys in selected bays and lagoons. Chapter 5 examines the distribution of nutrients in lagoons, inshore, and offshore waters around the island. Chapter 6 is focused on the distribution of chemical contaminants in sediments and corals. Chapter 7 is a brief summary discussion that highlights key findings of the entire suite of studies.
    Keywords: Biology ; Ecology ; Fisheries ; Management ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14807 | 403 | 2014-02-27 20:26:10 | 14807 | United States National Ocean Service
    Publication Date: 2021-06-25
    Description: From the 1940s until 2003, portions of the island of Vieques, a municipality within the Commonwealth of Puerto Rico, were used by the US Navy as a base and training facility, resulting in development and zoning history that differ in comparison to other Caribbean islands. The majority of former Navy lands are now under the jurisdiction of the Department of the Interior’s Fish and Wildlife Service as a National Wildlife Refuge, while a smaller percentage of land was transferred to the Vieques municipality and the Puerto Rico Conservation Trust. An analysis of the distribution and status of the marine resources is timely in light of the recent land transfer, increases in development and tourism, and potential changes in marine zoning around the island. To meet this need, NOAA’s Biogeography Branch, in cooperation with the Office of Response and Restoration and other local and regional partners, conducted Part I of an ecological characterization to integrate historical data and research into a synthesis report. The overall objective of this report is to provide resource managers and residents a comprehensive characterization of the marine resources of Vieques to support research, monitoring, and management. For example, knowledge of the spatial distribution of physical features, habitats, and biological communities is necessary to make an informed decision of the establishment and placement of a marine protected area (MPA).The report is divided into chapters based on the physical environment (e.g., climate, geology, bathymetry), habitat types (e.g., reefs and hardbottom, seagrasses, mangroves) and major faunal groups (e.g. fish, turtles, birds). Each section includes five subsections: an overview, description of the relevant literature, methods of analysis, information on the distribution, status and trends of the particular resource, and a discussion of ecological linkages with other components of the Vieques marine ecosystem and surrounding environment.The physical environment of Vieques is similar to other islands within the Greater Antilles chain, with some distinctions. The warm, tropical climate of Vieques, mediated by the northeasterly trade winds, is characterized by a dry season (December-April) and a rainy season (May-November), the latter of which is characterized by the occasional passage of tropical cyclones. Compared to mainland Puerto Rico, Vieques is characterized by lower elevation, less annual precipitation, and higher average temperatures. The amount of annual precipitation also varies spatially within Vieques, with the western portion of the island receiving higher amounts of rainfall than further east. While the North Equatorial Current dominates the circulation pattern in the Greater Antilles region, small scale current patterns specific to Vieques are not as well characterized. These physical processes are important factors mitigating the distribution and composition of marine benthic habitats around Vieques.In general, the topography of Vieques is characterized by rolling hills. Mt. Pirata, the tallest point at 301 m, is located near the southwest coast. In the absence of island wide sedimentation measurements, information on land cover, slope, precipitation, and soil type were used to estimate relative erosion potential and sediment delivery for each watershed. While slope and precipitation amount are the primary driving factors controlling runoff, land use practices such as urban development, military activity, road construction, and agriculture can increase the delivery of pollution and sediments to coastal waters. Due to the recent land transfer, increased development and tourism is expected, which may result in changes in the input of sediments to the coastal environment.
    Keywords: Ecology ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: monograph
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  Chris.Caldow@noaa.gov | http://aquaticcommons.org/id/eprint/14829 | 403 | 2014-02-28 21:47:16 | 14829 | United States National Ocean Service
    Publication Date: 2021-06-26
    Description: Hawaii’s coastal marine resources have declined dramatically over the past 100 years due to multiple anthropogenic stressors including overfishing, coastal development, pollution, overuse, invasive species and climate change. It is now becoming evident that ecosystem-based management, in the form of marine protected areas (MPAs), is necessary to conserve biodiversity, maintain viable fisheries, and deliver a broad suite of ecosystem services. Over the past four decades, Hawaii has developed a system of MPAs to conserve and replenish marine resources around the state. These Marine Life Conservation Districts (MLCDs) vary in size, habitat quality, and management regimes, providing an excellent opportunity to test hypotheses concerning MPA design and function using multiple discreet sampling units.NOAA/NOS/NCCOS/Center for Coastal Monitoring and Assessment’s Biogeography Branch used digital benthic habitat maps coupled with comprehensive ecological studies between 2002 and 2004 to evaluate the efficacy of all existing MLCDs using a spatially-explicit stratified random sampling design. The results from this work have shown that areas fully protected from fishing had higher fish biomass, larger overall fish size, and higher biodiversity than adjacent areas of similar habitat quality. Other key findings demonstrated that top predators and other important fisheries species were more abundant and larger in the MPAs, illustrating the effectiveness of these closures in conserving these populations. Habitat complexity, protected area size and habitat diversity were the major factors in determining effectiveness among MPAs.
    Keywords: Ecology ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: monograph
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  • 98
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14825 | 403 | 2014-02-28 20:16:19 | 14825 | United States National Ocean Service
    Publication Date: 2021-06-25
    Description: Since 1999, NOAA’s Center for Coastal Monitoring and Assessment, Biogeography Branch (CCMA-BB) has been working with federal and territorial partners to characterize monitor and assess the status of the marine environment in southwestern Puerto Rico. This effort is part of the broader NOAA Coral Reef Conservation Program’s (CRCP) National Coral Reef Ecosystem Monitoring Program (NCREMP). With support from CRCP’s NCREMP, CCMA conducts the “Caribbean Coral Reef Ecosystem Monitoring project” (CREM) with goals to: (1) spatially characterize and monitor the distribution, abundance and size of marine fauna associated with shallow water coral reef seascapes (mosaics of coral reefs, seagrasses, sand and mangroves); (2) relate this information to in situ fine-scale habitat data and the spatial distribution and diversity of habitat types using benthic habitat maps; (3) use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting; (4) establish the efficacy of those management decisions; and (5) develop data collection and data management protocols. The monitoring effort of the La Parguera region in southwestern Puerto Rico was conducted through partnerships with the University of Puerto Rico (UPR) and the Puerto Rico Department of Natural and Environmental Resources (DNER). Project funding was primarily provided by NOAA CRCP and CCMA.In recent decades, scientific and non-scientific observations have indicated that the structure and function of the coral reef ecosystem in the La Parguera region have been adversely impacted by a wide range of environmental stressors. The major stressors have included the mass Diadema die off in the early 1980s, a suite of hurricanes, overfishing, mass mortality of Acropora corals due to disease and several coral bleaching events, with the most severe mass bleaching episode in 2005. The area is also an important recreational resource supporting boating, snorkeling, diving and other water based activities. With so many potential threats to the marine ecosystem several activities are underway or have been implemented to manage the marine resources. These efforts have been supported by the CREM project by identifying marine fauna and their spatial distributions and temporal dynamics. This provides ecologically meaningful data to assess ecosystem condition, support decision making in spatial planning (including the evaluation of efficacy of current management strategies) and determine future information needs. The ultimate goal of the work is to better understand the coral reef ecosystems and to provide information toward protecting and enhancing coral reef ecosystems for the benefit of the system itself and to sustain the many goods and services that it offers society. This Technical Memorandum contains analysis of the first seven years of fish survey data (2001-2007) and associated characterization of the benthos. The primary objectives were to quantify changes in fish species and assemblage diversity, abundance, biomass and size structure and to provide spatially explicit information on the distribution of key species or groups of species and to compare community structure across the seascape including fringing mangroves, inner, middle, and outer reef areas, and open ocean shelf bank areas.
    Description: Cooperative investigation between NOAA and the University of Puerto Rico
    Keywords: Biology ; Ecology ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: monograph
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14832 | 403 | 2014-03-04 18:18:07 | 14832 | United States National Ocean Service
    Publication Date: 2021-06-26
    Description: Gray’s Reef National Marine Sanctuary (GRNMS) is located 32.4 km offshore of Sapelo Island, Georgia. The ecological importance of this area is related to the transition between tropical and temperate waters, and the existence of a topographically complex system of ledges. Due to its central location, GRNMS can be used as a focal site to study the accumulation and impacts of marine debris on the Atlantic continental shelf offshore of the Southeast United States. Previously, researchers characterized marine debris in GRNMS and reported that incidence of the debris at the limited densely colonized ledge sites was significantly greater than at sand or sparsely colonized live bottom, and is further influenced by the level of boating activity and physiographic characteristics (e.g., ledge height). Information gleaned from the initial marine debris characterization was used to devise a strategy for prioritizing cleanup and monitoring efforts. However, a significant gap in knowledge was the rate of debris accumulation.The primary objective of this study was to select, mark, and perform initial marine debris surveys at permanent monitoring sites within GRNMS to quantify long-term trends in types, abundance, impacts, and accumulation rates of debris. Ledge sites were selected to compare types, abundance, and accumulation rates of marine debris between a) areas of high and low use and b) short and tall ledges. Nine permanent monitoring sites were marked and initially surveyed in 2007/2008. Surveys were conducted within a 50 x 4 m transect for a total survey area of 200 square meters. All debris was removed and detailed information was taken on the types of debris, quantity, and associations with benthic fauna. Information on associations with benthic fauna included degree of entanglement, type of organism with which it is entangled or resting on, degree of fouling, and visible impacts such as tissue abrasions. Sites were re-surveyed approximately one year later to quantify new accumulation.During the initial survey, a total of ten debris items, totaling 16.3 kg in weight, were removed from two monitoring stations, both “tall” sites within the area of high boat use. Year-one accumulation totaled five items and approximately 7 kg in weight. Similar to the initial survey, all debris was found at sites in the area of high boat use. However, in contrast to the initial survey, two of these items were found on medium-height ledges. Removed items included fishing line, leaders, rope, plastic, and fabric. Although items were often encrusted in benthic biota or entangled on the ledge, impacts such as abrasions or other injuries were not observed.During the 2009 monitoring efforts, volunteer divers were trained to conduct the survey. Monitoring protocols were documented for GRNMS staff and included as an appendix of this report to enable long-term monitoring of sites.Additionally, national reconnaissance data (e.g. satellite, radar, aerial surveys) and other information on known fishing locations were examined for patterns of resource use and correlations with debris occurrence patterns. A previous model predicting the density of marine debris based on ledge features and boat use was refined and the results were used to generate a map of predicted debris density for all ledges.
    Keywords: Ecology ; Fisheries ; Management ; Pollution
    Repository Name: AquaDocs
    Type: monograph
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  charles.menza@noaa.gov | http://aquaticcommons.org/id/eprint/14831 | 403 | 2014-02-28 22:36:51 | 14831 | United States National Ocean Service
    Publication Date: 2021-06-26
    Description: This report describes a surveillance strategy to detect deepwater invasive species in the Northwestern Hawaiian Islands. A need for this strategy was identified in the Papahānaumokuākea Marine National Monument Management Plan and the Monument’s Draft Natural Resources Science Plan. This strategy focuses on detecting two species of concern, the octocoral Carijoa riisei and the red alga Hypnea musciformis.Most research on invasive species in the Hawaiian archipelago has focused on shallow water habitats within the limits of conventional SCUBA (0-30 m). Deeper habitats such as mesophotic reefs are much more difficult to access and consequently little is known about the distribution of deepwater invasive species or their impacts. Recent deepwater (〉30 m) sightings of H. musciformis and C. riisei, in and near NWHI, respectively, have prompted a call for further research and surveillance of invasive species in deepwater habitats.This report compiles the most up to date information about these two species of concern in deepwater habitats. A literature search and conversations with subject matter experts was used to identify their current distribution, preferred habitat types, optimal detection methods and ways to efficiently sample the vast extent of NWHI.The proposed sampling strategy prioritizes survey effort where C. riisei and H. musciformis are most likely to be found. At coarse spatial scales (tens to hundreds of kilometers), opportunistic observations and distance from the Main Hawaiian Islands, a principal propagule source, are used to identify high-risk islands and banks. At fine spatial scales (meters to tens of kilometers) a habitat suitability model was developed to identify high-risk habitats.The habitat suitability model focused on habitat preferences of C. riisei, since the species is well studied and adequate data exists to map habitats. There was insufficient information to identify suitable habitat for H. muscifomis. Habitat preferences for the algae are poorly understood and there is a lack of data at relevant spatial scales to map those preferences which are known. The principal habitats identified by the habitat suitability model were ledges and the edges of rugose coral reefs, where the shade loving octocoral would likely be found. Habitat suitability maps were developed for seven atolls and banks to aid in survey site selection.The protocol relied on technical divers to conduct visual surveys of benthic habitats. It was developed to increase the efficiency of surveys, maximize the probability of detection, identify important information relevant to future surveys and standardize results.The strategy, model and protocol were tested during a field mission in 2009 at several atolls and islands in NWHI. The field mission did not detect any invasive species among deepwater habitats and much was learned to improve future surveys. Data gaps and improvements are discussed.
    Description: A report by the Center for Coastal Monitoring and Assessment’s Biogeography Branch for the Papahānaumokuākea Marine National Monument
    Keywords: Ecology ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
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