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  • Biogeochemistry
  • Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu  (15)
  • Elsevier  (1)
  • Cell Press
  • Institute of Electrical and Electronics Engineers (IEEE)
  • 1
    Publication Date: 2017-04-04
    Description: Hydrothermal fluids and sediments from subaerial and shallow submarine sites at Vulcano Island, Italy were investigated for relations between the thermophilic microbial communities, as analysed by fluorescence in situ hybridization, and their geochemical environment, as assessed by photometry, chromatography, and in situ microsensor measurements. Mixing between hydrothermal fluids and seawater in the sediment pore space was reflected in the chemical composition of the emitted fluids, in depth profiles of pore water oxygen and sulfide concentrations, and in the structure of the benthic microbial community. Organic compounds did not accumulate in the vent fluids (b10 AM fatty acids) or in the sediments (b0.1% Corg), suggesting that efficient utilization supported microbial populations on the order of 104 cells per ml fluid and 108 cells per cm3 sediment. Groups of thermophiles that typically gain metabolic energy from the fermentation of organic matter (Thermococcales, Thermotoga/Thermosipho spp., and Bacillus sp.)were detected in significant abundances at all study sites. Also abundant were thermophiles capable of oxidizing organic acids with oxygen, nitrate, or sulfate. Aerobic thermophiles (Aquificales and Thermus sp.) were more abundant at oxic sites than at anoxic sites. Increasingly oxygenated habitats were associated with decreasing abundance of anaerobic (hyper)thermophiles belonging to the order Archaeoglobales.
    Description: Published
    Description: 169– 182
    Description: partially_open
    Keywords: Biogeochemistry ; Hydrothermal system ; Marine sediment ; Microbial ecology ; Microsensor ; Thermophiles ; 03. Hydrosphere::03.04. Chemical and biological::03.04.04. Ecosystems ; 03. Hydrosphere::03.04. Chemical and biological::03.04.06. Hydrothermal systems
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Format: 539 bytes
    Format: 315050 bytes
    Format: text/html
    Format: application/pdf
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  • 2
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: EN638 Bulk Plate Rates
    Description: Small substrate hydrolysis of bulk water samples samples taken aboard the R/V Endeavor EN638, May 2019 in the Northern Atlantic. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/820973
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736772
    Keywords: Carbon cycling ; Extracellular enzymes ; Heterotrophy ; Microbial activity ; Biogeochemistry
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 3
    Publication Date: 2022-10-31
    Description: Dataset: Kelp forest pumping data - pH
    Description: pH measured in situ over depth in the kelp forest (36° 37.3’ N, 121° 54.1’ W) recorded in July 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/826162
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; In situ pumping ; PH
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 4
    Publication Date: 2022-10-31
    Description: Dataset: Nighttime Surface Chlorophyll a
    Description: Nighttime surface chlorophyll-a concentrations at the MBARI OA1 Buoy (36° 37.373’ N, 121 ° 54.000’ W) from June to October 2018 For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/822494
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; Chlorophyll a
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 5
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Ruergeria pomeroyi DSS-3 replete proteome
    Description: This dataset represents the global proteome of replete laboratory cultures of Ruergeria pomeroyi DSS-3 (collected in triplicate). This dataset is an initial examination of the proteome allocation of this heterotrophic bacteria and will contribute to C-CoMP's efforts that are focused on understanding the physiology of model marine bacteria. A total of 2341 proteins were identified in DSS-3. The Moran laboratory at University of Georgia grew and prepared the cultures and the Saito laboratory at Woods Hole Oceanographic Institution conducted the proteomics analyses. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/875600
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-2019589
    Keywords: Proteomics ; Marine bacteria ; Physiology ; Metabolites ; Biogeochemistry
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 6
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Alteromonas macleodii MIT1002 replete proteome
    Description: This dataset represents the global proteome of replete laboratory cultures of Alteromonas macleodii MIT1002 (collected in triplicate). This dataset is an initial examination of the proteome allocation of this heterotrophic bacteria and will contribute to C-CoMP's efforts that are focused on understanding the physiology of model marine bacteria. A total of 2075 proteins were identified in MIT1002. The Moran laboratory at University of Georgia grew and prepared the cultures and the Saito laboratory at Woods Hole Oceanographic Institution conducted the proteomics analyses. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/875612
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-2019589
    Keywords: Proteomics ; Marine bacteria ; Physiology ; Metabolites ; Biogeochemistry
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 7
    Publication Date: 2022-10-31
    Description: Dataset: ADCP - Inside Kelp Forest
    Description: Cross-shore and alongshore velocity inside the kelp forest at Hopkins Marine Station (36° 37.297’ N, 121° 54.102’ W) recorded between June and October, 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/826431
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest/outside kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; Current velocity
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 8
    Publication Date: 2022-10-31
    Description: Dataset: Kelp Forest Estimated Carbonate Parameters
    Description: Kelp forest mooring DIC, TA, pCO2, and aragonite saturation state estimations inside the kelp canopy (36° 37.297’ N, 121° 54.102’ W.) at Hopkins Marine Station, recorded between June and October 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/823008
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; DIC ; Alkalinity ; Omega (aragonite) ; PCO2
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 9
    Publication Date: 2022-10-31
    Description: Dataset: ADCP - Outside Kelp Forest
    Description: Cross-shore and alongshore velocity outside the kelp forest at Hopkins Marine Station (36° 37.342’ N, 121° 54.049’ W) recorded between June and October, 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/822913
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest/outside kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; Current velocity
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 10
    Publication Date: 2022-10-31
    Description: Dataset: Kelp Forest Mooring New Fronds
    Description: Number of new fronds recorded at the kelp mooring (Central CA Macrocystis pyrifera forest, 36° 37.297’ N, 121° 54.102’ W) from July to August 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/822535
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; New kelp fronds
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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