ALBERT

Description: In this study, we present a new synthesis of GPS velocities for tectonic deformation within the Tibetan Plateau and its surrounding areas, a combined data set of ~1854 GPS-derived horizontal velocity vectors. Assuming that crustal deformation is localized along major faults, a block modelling approach is employed to interpret the GPS velocity field. We construct a 30-element block model to describe present-day deformation in western China, with half of them located within the Tibetan Plateau, and the remainder located in its surrounding areas. We model the GPS velocities simultaneously for the effects of block rotations and elastic strain induced by the bounding faults. Our model yields a good fit to the GPS data with a mean residual of 1.08 mm a –1 compared to the mean uncertainty of 1.36 mm a –1 for each velocity component, indicating a good agreement between the predicted and observed velocities. The major strike-slip faults such as the Altyn Tagh, Xianshuihe, Kunlun and Haiyuan faults have relatively uniform slip rates in a range of 5–12 mm a –1 along most of their segments, and the estimated fault slip rates agree well with previous geologic and geodetic results. Blocks having significant residuals are located at the southern and southeastern Tibetan Plateau, suggesting complex tectonic settings and further refinement of accurate definition of block geometry in these regions.

Description: As a leading pathogen, Edwardsiella piscicida can cause hemorrhagic septicemia in fish and gastro-intestinal infections in humans. The two-component regulatory system EsrA-EsrB plays essential roles in pathogenesis through the type III and type VI secretion systems, and hemolysin production in E. piscicida . It is unclear whether other virulence- or stress response-associated genes are regulated by EsrA-EsrB. In this study, the proteomes of wild-type E. piscicida EIB202 and esrB mutant strains were compared to reveal EsrB regulon components after growth in Luria–Bertani broth (LB). Overall, the expression levels of nine genes exhibited significant changes, and five of them required the presence of EsrB, while others exhibited higher levels in the esrB mutant. The diverse functions of these proteins were identified, including amino acid metabolism, oxidative stress defense and energy production. Interestingly, superoxidase dismutase and thiol peroxidase were the most significantly down-regulated by EsrB. Furthermore, other reported reactive oxygen species (ROS) resistance-related genes were also down-regulated by EsrB as revealed by quantitative real-time. Compared with the wild-type and the complement strain esrB + , esrB displayed a significantly enhanced ROS resistance. These results demonstrated that EsrB plays important roles in the ROS resistance pathway in E. piscicida grown in LB conditions.

Description: The sepsis caused by Vibrio vulnificus is characterized by an average incubation period of 26 h and a high mortality rate exceeding 50%. The fast growth and dissemination of V. vulnificus in vivo lead to poor clinical outcomes in patients. Therefore, elucidation of the proliferation mechanisms of this organism in vivo may lead to the development of an effective therapeutic strategy. In this study, we focused on the low oxygen concentration in the intestinal milieu because of its drastic difference from that in air. Fumarate and nitrate reduction regulatory protein (FNR) is known to be a global transcriptional regulator for adaptation to anaerobic conditions in various bacteria. We generated a strain of V. vulnificus in which the fnr gene was replaced with an erythromycin resistance gene ( fnr :: erm mutant). When the fnr :: erm mutant was tested in a growth competition assay against the wild-type (WT) in vivo , the competitive index of fnr :: erm mutant to WT in the intestinal loop and liver was 0.378 ± 0.192 (mean ± SD) and 0.243 ± 0.123, respectively. These data suggested that FNR is important for the proliferation of V. vulnificus in the intestine to achieve a critical mass to be able to invade the systemic circulation.

Description: Using an up-to-date global plate rotation model, applied to the endpoints of preserved major spreading ridge isochrons, we have calculated the explicitly reconstructable length-weighted mean global half-spreading rate (HSR), ridge length and area production as a function of time since the end of the Cretaceous Normal Superchron at 83.0 Ma. Our calculations integrate uncertainties in rotation parameters and chron boundary ages with the partial sampling uncertainties arising from progressive subduction of older oceanic lithosphere and its preserved spreading record. This record of directly reconstructable oceanic ridge production provides a well-constrained baseline that can be compared to reconstructions that include the largely unconstrained extrapolated histories of entirely subducted oceanic plates. The directly reconstructable global mean HSR has not varied by more than ±15 per cent about an average rate of 28.4 ± 4.6 mm a –1 since 83 Ma. No long-term secular trend is evident: a maximum global mean half-rate of 32 ± 6 mm a –1 occurred from 33.1 Ma to about 25.8 Ma, with minima of 26 ± 5 mm a –1 between about 56 and 40.2 Ma, and 24 ± 1 mm a –1 since 3.2 Ma. Only this most recent interval has a rate that differs significantly (at ±2) from the long-term mean. The global, reconstructable ridge length at 56 Ma decreases by less than 15 per cent relative to the modern ridge system; by 83 Ma it has decreased by 38 per cent. These relatively high preserved ridge fractions mean that the estimated uncertainty due to partial sampling stays roughly equivalent to the estimated rotation model uncertainties, allowing long-term spreading rate variations of 〉20 per cent since the Late Cretaceous to be ruled out. In contrast, prior to 83 Ma too little oceanic lithosphere is preserved to reliably reconstruct global spreading rates.

Description: Helicobacter pylori is an important cause of gastric pathologies and persistent infection can lead to stomach cancer. Virulent H. pylori strains encode a type IV secretion system responsible for translocation of the oncogenic CagA protein into cells of the gastric mucosa. Gene HP0522 encodes the essential component Cag (Cag3), and we show by gel filtration and cross-linking that purified Cag forms high molecular mass complexes. In contrast, its interaction partner CagT is mostly monomeric, but co-fractionates after gel filtration. Analysis by transmission electron microscopy revealed that purified Cag complexes can self-assemble ring-like structures. Cag-overexpressing Escherichia coli exhibits membrane-associated circular profiles in regions of the cell envelope with intense immunogold labelling with a Cag-specific antiserum. Our results suggest that Cag has the capacity to form macromolecular structures contributing to the assembly of the type IV secretion system.

Description: We explore thermal convection of a fluid with a temperature-dependent viscosity in a basally heated 3-D spherical shell using linear stability analyses and numerical experiments, while considering the application of our results to terrestrial planets. The inner to outer radius ratio of the shell f assumed in the linear stability analyses is in the range of 0.11–0.88. The critical Rayleigh number R c for the onset of thermal convection decreases by two orders of magnitude as f increases from 0.11 to 0.88, when the viscosity depends sensitively on the temperature, as is the case for real mantle materials. Numerical simulations carried out in the range of f  = 0.11–0.55 show that a thermal boundary layer (TBL) develops both along the surface and bottom boundaries to induce cold and hot plumes, respectively, when f is 0.33 or larger. However, for smaller f values, a TBL develops only on the bottom boundary. Convection occurs in the stagnant-lid regime where the root mean square velocity on the surface boundary is less than 1 per cent of its maximum at depth, when the ratio of the viscosity at the surface boundary to that at the bottom boundary exceeds a threshold that depends on f . The threshold decreases from 10 6.5 at f  = 0.11 to 10 4 at f  = 0.55. If the viscosity at the base of the convecting mantle is 10 20 –10 21  Pa s, the Rayleigh number exceeds R c for Mars, Venus and the Earth, but does not for the Moon and Mercury; convection is unlikely to occur in the latter planets unless the mantle viscosity is much lower than 10 20  Pa s and/or the mantle contains a strong internal heat source.

Description: Subducting oceanic lithosphere is an example of a thin sheet-like object whose characteristic lateral dimension greatly exceeds its thickness. Here we exploit this property to derive a new hybrid boundary-integral/thin sheet (BITS) representation of subduction that combines in a single equation all the forces acting on the sheet: gravity, internal resistance to bending and stretching, and the tractions exerted by the ambient mantle. For simplicity, we limit ourselves to 2-D. We solve the BITS equations using a discrete Lagrangian approach in which the sheet is represented by a set of vertices connected by edges. Instantaneous solutions for the sinking speed of a slab attached to a trailing flat sheet obey a scaling law of the form V / V Stokes  = fct(St), where V Stokes is a characteristic Stokes sinking speed and St is the sheet's flexural stiffness. Time-dependent solutions for the evolution of the sheet's shape and thickness show that these are controlled by the viscosity ratio between the sheet and its surroundings. An important advantage of the BITS approach is the possibility of generalizing the sheet's rheology, either to a viscosity that varies along the sheet or to a non-Newtonian shear-thinning rheology.

Description: Invertebrate animal species that can withstand temperatures as high as 37°C, the human body temperature, are limited. In the present study, we utilized the two-spotted cricket, Gryllus bimaculatus , which lives in tropical and subtropical regions, as an animal model of human pathogenic bacterial infection. Injection of Pseudomonas aeruginosa or Staphylococcus aureus into the hemolymph killed crickets. Injected P. aeruginosa or S. aureus proliferated in the hemolymph until the cricket died. The ability of these pathogenic bacteria to kill the crickets was blocked by the administration of antibiotics. S. aureus gene-knockout mutants of virulence factors, including cvfA, agr and srtA , exhibited decreased killing ability compared with the parent strain. The dose at which 50% of crickets were killed by P. aeruginosa or S. aureus was not decreased at 37°C compared with that at 27°C. Injection of Listeria monocytogenes , which upregulates toxin expression at 37°C, killed crickets, and the dose at which 50% of crickets were killed was decreased at 37°C compared with that at 27°C. These findings suggest that the two-spotted cricket is a useful model animal for evaluating the virulence properties of various human pathogenic bacteria at variable temperature including 37°C.

Description: The aftershock distribution of the 1933 Sanriku-oki outer trench earthquake is estimated by using modern relocation methods and a newly developed velocity structure to examine the spatial extent of the source-fault and the possibility of a triggered interplate seismicity. In this study, we first examined the regional data quality of the 1933 earthquake based on smoked-paper records and then relocated the earthquakes by using the 3-D velocity structure and double-difference method. The improvements of hypocentre locations using these methods were confirmed by the examination of recent earthquakes that are accurately located based on ocean bottom seismometer data. The results show that the 1933 aftershocks occurred under both the outer- and inner-trench-slope regions. In the outer-trench-slope region, aftershocks are distributed in a ~280-km-long area and their depths are shallower than 50 km. Although we could not constrain the fault geometry from the hypocentre distribution, the depth distribution suggests the whole lithosphere is probably not under deviatoric tension at the time of the 1933 earthquake. The occurrence of aftershocks under the inner trench slope was also confirmed by an investigation of waveform frequency difference between outer and inner trench earthquakes as recorded at Mizusawa. The earthquakes under the inner trench slope were shallow (depth less double equals30 km) and the waveforms show a low-frequency character similar to the waveforms of recent, precisely located earthquakes in the same area. They are also located where recent activity of interplate thrust earthquakes is high. These suggest that the 1933 outer-trench-slope main shock triggered interplate earthquakes, which is an unusual case in the order of occurrence in contrast with the more common pairing of a large initial interplate shock with subsequent outer-slope earthquakes. The off-trench earthquakes are distributed about 80 km width in the trench perpendicular direction. This wide width cannot be explained from a single high-angle fault confined at a shallow depth (depth less double equals50 km). The upward motion of the 1933 tsunami waveform records observed at Sanriku coast also cannot be explained from a single high-angle west-dipping normal fault. If we consider additional fault, involvement of high-angle, east-dipping normal faults can better explain the tsunami first motion and triggering of the aftershock in a wide area under the outer trench slope. Therefore multiple off-trench normal faults may have activated during the 1933 earthquake. We also relocated recent (2001–2012) seismicity by the same method. The results show that the present seismicity in the outer-trench-slope region can be divided into several groups along the trench. Comparison of the 1933 rupture dimensions based on our aftershock relocations with the morphologies of fault scarps in the outer trench slope suggest that the rupture was limited to the region where fault scarps are largely trench parallel and cross cut the seafloor spreading fabric. These findings imply that bending geometry and structural segmentation of the incoming plate largely controls the spatial extent of the 1933 seismogenic faulting. In this shallow rupture model for this largest outer trench earthquake, triggered seismicity in the forearc and structural control of faulting represent an important deformation styles for off-trench and shallow megathrust zones.

Description: The OmpA-like protein domain has been associated with peptidoglycan-binding proteins, and is often found in virulence factors of bacterial pathogens. The intracellular pathogen Legionella pneumophila encodes for six proteins that contain the OmpA-like domain, among them the highly conserved uncharacterized protein we named CmpA. Here we set out to characterize the CmpA protein and determine its contribution to intracellular survival of L. pneumophila . Secondary structure analysis suggests that CmpA is an inner membrane protein with a peptidoglycan-binding domain at the C-teminus. A cmpA mutant was able to replicate normally in broth, but failed to compete with an isogenic wild-type strain in an intracellular growth competition assay. The cmpA mutant also displayed significant intracellular growth defects in both the protozoan host Acanthamoeba castellanii and in primary bone marrow-derived macrophages, where uptake into the cells was also impaired. The cmpA phenotypes were completely restored upon expression of CmpA in trans . The data presented here establish CmpA as a novel virulence factor of L. pneumophila that is required for efficient intracellular replication in both mammalian and protozoan hosts.

Description: Shiga toxin-encoding Escherichia coli (STEC) regroup strains that carry genes encoding Shiga toxin (Stx). Among intestinal pathogenic E. coli , enterohaemorrhagic E. coli (EHEC) constitute the major subgroup of virulent STEC. EHEC cause serious human disease such as haemorrhagic colitis and haemolytic-uremic syndrome. While EHEC have evolved from enteropathogenic E. coli , hybrids with enteroaggregative E. coli have recently emerged. Of note, some enteroinvasive E. coli also belong to the STEC group. While the LEE (locus of enterocyte effacement) is a key and prominent molecular determinant in the pathogenicity, neither all EHEC nor STEC contain the LEE, suggesting that they possess additional virulence and colonisation factors. Currently, nine protein secretion systems have been described in diderm-lipopolysaccharide bacteria (archetypal Gram-negative) and can be involved in the secretion of extracellular effectors, cell-surface proteins or assembly of cell-surface organelles, such as flagella or pili. In this review, we focus on the secretome of STEC and related enteropathotypes, which are relevant to the colonisation of biotic and abiotic surfaces. Considering the wealth of potential protein trafficking mechanisms, the different combinations of colonisation factors and modulation of their expression is further emphasised with regard to the ecophysiology of STEC.

Description: Geodetic, geologic and palaeomagnetic data reveal that Oregon (western USA) rotates clockwise at 0.3 to 1.0° Ma –1 (relative to North America) about an axis near the Idaho–Oregon–Washington border, while northeast Washington is relatively fixed. This rotation has been going on for at least 15 Ma. The Yakima fold and thrust belt (YFTB) forms the boundary between northern Oregon and central Washington where convergence of the clockwise-rotating Oregon block is apparently accommodated. North–south shortening across the YFTB has been thought to occur in a fan-like manner, increasing in rate to the west. We obtained high-accuracy, high-density geodetic GPS measurements in 2012–2014 that are used with earlier GPS measurements from the 1990s to characterize YFTB kinematics. The new results show that the deformation associated with the YFTB starts at the Blue Mountains Anticline in northern Oregon and extends north beyond the Frenchman Hills in Washington, past the epicentre of the 1872 M w 7.0 Entiat earthquake to 49°N. The north–south strain rate across the region is 2 to 3 x 10 –9 yr –1 between the volcanic arc and the eastern edge of the YFTB (241.0°E); east of there it drops to about 10 –9 yr –1 . At the eastern boundary of the YFTB, faults and earthquake activity are truncated by a north-trending, narrow zone of deformation that runs along the Pasco Basin and Moses Lake regions near 240.9°E. This zone, abutting the Department of Energy Hanford Nuclear Reservation, accommodates about 0.5 mm yr –1 of east to northeast shortening. A similar zone of N-trending transpression is seen along 239.9°E where there is a change in the strike of the Yakima folds. The modern deformation of the YFTB is about 600 km wide from south to north and internally may be controlled by pre-existing crustal structure.

Description: The Central Anatolian orogenic plateau is represented by young volcanism, rapid plateau uplift and distinctive (past and active) tectonic deformation. In this study, we consider observational data in terms of regional present-day geodynamics in the region. The residual topography of Central Anatolia was derived to define the regional isostatic conditions according to Airy isostasy and infer the potential role of ‘dynamic topography’. 2-D thermomechanical forward models for coupled mantle-lithosphere flow/deformation were conducted along an N–S directional profile through the region (e.g. northern/Pontides, interior and southern/Taurides). These models were based on seismic tomography data that provide estimates about the present-day mantle thermal structure beneath the Anatolian plate. We compare the modelling results with calculated residual topography and independent data sets of geological deformation, gravity and high surface heat flow/widespread geothermal activity. Model results suggest that there is ~1 km of mantle flow induced dynamic topography associated with the sublithospheric flow driven by the seismically inferred mantle structure. The uprising mantle may have also driven the asthenospheric source of volcanism in the north (e.g. Galatia volcanic province) and the Cappadocia volcanic province in the south while elevating the surface in the last 10 Myr. Our dynamic topography calculations emphasize the role of vertical forcing under other orogenic plateaux underlain by relatively thin crust and low-density asthenospheric mantle.

Description: In many geological systems, inversion of density stratification sets in Rayleigh–Taylor (RT) instabilities, leading to an ascent of relatively low-density materials through the high-density overburden in the form of diapirs. These diapirs often originate from dipping low-density layers. This study aims to show how the initial tilt of such source layers can control the ascent behaviour of diapirs initiated by RT instabilities. Using two-layer viscous models we produced RT instabilities in physical experiments, and investigated the effects of source-layer tilts ( β ). Our experiments suggest that these diapirs ascend with contrasting lateral spreading rates in the up and down slope directions, resulting in their axi-asymmetric geometry. However, their heads retain a circular outline on the horizontal top surface, where the upwelling axis is located away from their geometric centre in the upslope direction. In this paper, we present a series of experimental models to demonstrate the spectrum of axi-symmetric to -asymmetric geometrical transitions with increasing β . Our experiments also reveal that when β is large (〉4°) the diapirs become unstable, resulting in a continuous migration of their stems in the upslope direction. Using the volume of fluid method we ran computational fluid dynamic (CFD) simulations to study the underlying hydrodynamics of axi-asymmetric diapiric growth. The CFD simulations show that β 〉 0° conditions develop stronger flow vortices on the downslope side of an ascending diapir, leading to a pressure difference between the up- and downslope flanks. Such a differential pressure causes the diapir head to spread at a faster rate in the tilt direction. An estimate of the asymmetric spreading rates is given as a function of β . Our present study provides a fundamental understanding of the hydrodynamic flow structure responsible for the asymmetric growth of RT instabilities on tilted source layers, as applicable to a wide range of large-scale geological settings, such as sedimentary basins and subduction zones.

Description: The geomechanical analysis of a highly compartmentalized reservoir is performed to simulate the seafloor subsidence due to gas production. The available observations over the hydrocarbon reservoir consist of bathymetric surveys carried out before and at the end of a 10-yr production life. The main goal is the calibration of the reservoir compressibility c M , that is, the main geomechanical parameter controlling the surface response. Two conceptual models are considered: in one (i) c M varies only with the depth and the vertical effective stress (heterogeneity due to lithostratigraphic variability); in another (ii) c M varies also in the horizontal plane, that is, it is spatially distributed within the reservoir stratigraphic units. The latter hypothesis accounts for a possible partitioning of the reservoir due to the presence of sealing faults and thrusts that suggests the idea of a block heterogeneous system with the number of reservoir blocks equal to the number of uncertain parameters. The method applied here relies on an ensemble-based data assimilation (DA) algorithm (i.e. the ensemble smoother, ES), which incorporates the information from the bathymetric measurements into the geomechanical model response to infer and reduce the uncertainty of the parameter c M . The outcome from conceptual model (i) indicates that DA is effective in reducing the c M uncertainty. However, the maximum settlement still remains underestimated, while the areal extent of the subsidence bowl is overestimated. We demonstrate that the selection of the heterogeneous conceptual model (ii) allows to reproduce much better the observations thus removing a clear bias of the model structure. DA allows significantly reducing the c M uncertainty in the five blocks (out of the seven) characterized by large volume and large pressure decline. Conversely, the assimilation of land displacements only partially constrains the prior c M uncertainty in the reservoir blocks marginally contributing to the cumulative seafloor subsidence, that is, blocks with low pressure.

Description: This work aims to explore the ongoing tectonic activity of structures in the outermost sector of the Northern Apennines, which represents the active leading edge of the thrust belt and is dominated by compressive deformation. We have applied the Persistent Scatterer Interferometry (PSI) technique to obtain new insights into the present-day deformation pattern of the frontal area of the Northern Apennine. PSI has proved to be effective in detecting surface deformation of wide regions involved in low tectonic movements. We used 34 Envisat images in descending geometry over the period of time between 2004 and 2010, performing about 300 interferometric pairs. The analysis of the velocity maps and of the PSI time-series has allowed to observe ground deformation over the sector of the Po Plain between Piacenza and Reggio Emilia. The time-series of permanent GPS stations located in the study area, validated the results of the PSI technique, showing a good correlation with the PS time-series. The PS analysis reveals the occurrence of a well-known subsidence area on the rear of the Ferrara arc, mostly connected to the exploitation of water resources. In some instances, the PS velocity pattern reveals ground uplift (with mean velocities ranging from 1 to 2.8 mm yr –1 ) above active thrust-related anticlines of the Emilia and Ferrara folds, and part of the Pede-Apennine margin. We hypothesize a correlation between the observed uplift deformation pattern and the growth of the thrust-related anticlines. As the uplift pattern corresponds to known geological features, it can be used to constrain the seismo-tectonic setting, and a working hypothesis may involve that the active Emilia and Ferrara thrust folds would be characterized by interseismic periods possibly dominated by aseismic creep.

Description: The activity of levofloxacin against planktonic and biofilm Stenotrophomonas maltophilia cells and the role played by the multidrug efflux pump SmeDEF were evaluated under conditions relevant to the cystic fibrosis (CF) lung. MIC, MBC and MBEC of levofloxacin were assessed, against five CF strains, under ‘standard’ (CLSI-recommended) and ‘CF-like’ (pH 6.8, 5% CO 2 , in a synthetic CF sputum) conditions. Levofloxacin was tested against biofilms at concentrations (10, 50 and 100 μg mL –1 ) corresponding to achievable serum levels and sputum levels by aerosolisation. smeD expression was evaluated, under both conditions, in planktonic and biofilm cells by RT-PCR. The bactericidal effect of levofloxacin was decreased, in three out of five strains tested, under ‘CF-like’ conditions (MBC: 2–4 vs 8–16 μg mL –1 , under ‘standard’ and ‘CF-like’ conditions, respectively). Biofilm was intrinsically resistant to levofloxacin, regardless of conditions tested (MBECs ≥ 100 μg mL –1 for all strains). Only under ‘CF-like’ conditions, smeD expression increased during planktonic-to-biofilm transition, and in biofilm cells compared to stationary planktonic cells. Our findings confirmed that S. maltophilia biofilm is intrinsically resistant to therapeutic concentrations of levofloxacin. Under conditions relevant to CF, smeD overexpression could contribute to levofloxacin resistance. Further studies are warranted to define the clinical relevance of our findings .

Description: Auranofin is an FDA-approved gold-containing compound used for the treatment of rheumatoid arthritis. Recent reports of antimicrobial activity against protozoa and bacteria indicate that auranofin targets the reductive enzyme thioredoxin reductase (TrxR). We evaluated auranofin as well as five auranofin analogs containing N- heterocyclic carbenes (instead of the triethylphosphane present in auranofin) and five gold-carbene controls for their ability to inhibit or kill Helicobacter pylori in vitro . Auranofin completely inhibited bacterial growth at 1.2 μM. Purified H. pylori TrxR was inhibited by auranofin in a cell-free assay (IC 50 ~88 nM). The most active gold(I)- N- heterocyclic carbene compounds exhibited MICs comparable to auranofin against H. pylori (2 μM), while also exhibiting lower toxicities for human embryonic kidney cells (HEK-293T cells). Median toxic concentrations (TC 50 ) were 13–20-fold higher compared to auranofin indicating that they were less cytotoxic. The N- heterocyclic carbene analogs maybe well tolerated, but further evaluation is needed in vivo . Finally, auranofin was synergistic with the antibiotic amoxicillin, suggesting that targeting both the reductive enzyme TrxR and cell wall synthesis may be effective against H. pylori infections.

Description: In Europe, common input data types for seismic hazard evaluation include earthquake catalogues, seismic zonation models and ground motion models, all with well-constrained epistemic uncertainties. In contrast, neotectonic deformation models and their related uncertainties are rarely considered in earthquake forecasting and seismic hazard studies. In this study, for the first time in Europe, we developed a seismic hazard model based exclusively on active fault and geodynamic deformation models. We applied it to the External Dinarides, a slow-deforming fold-and-thrust belt in the Central Mediterranean. The two deformation models furnish consistent long-term earthquake rates above the M w 4.7 threshold on a latitude/longitude grid with 0.2° spacing. Results suggest that the use of deformation models is a valid alternative to empirical-statistical approaches in earthquake forecasting in slow-deforming regions of Europe. Furthermore, we show that the variability of different deformation models has a comparable effect on the peak ground motion acceleration uncertainty as do the ground motion prediction equations.

Description: Legionella feeleii is a Gram-negative pathogenic bacterium that causes Pontiac fever and pneumonia in humans. When L. feeleii serogroup 1 (ATCC 35072) was cultured on BCYE agar plates, two types of colonies were observed and exhibited differences in color, opacity and morphology. Since the two colony types are white rugose and brown translucent, they were termed as white rugose L. feeleii (WRLf) and brown translucent L. feeleii (BTLf), respectively. They exhibited different growth capacities in BYE broth in vitro , and it was found that WRLf could transform to BTLf. Under the electron microscope, it was observed that WRLf secreted materials which could be stained with ruthenium red, which was absent in BTLf. When U937 macrophages and HeLa cells were infected with the bacteria, WRLf manifested stronger internalization ability than BTLf. Intracellular growth in murine macrophages and Acanthamoeba cells was affected by the level of initial phagocytosis. WRLf was more resistant to human serum bactericidal action than BTLf. After being inoculated to guinea pigs, both organisms caused fever in the animals. These results suggest that ruthenium red-stained materials secreted in the surroundings may play a crucial role in determining L. feeleii colony morphology and virulence traits.

Description: An important real world application of doublet flow occurs in well design of both geothermal and hydrocarbon reservoirs. A guiding principle for fluid management of injection and extraction wells is that mass balance is commonly assumed between the injected and produced fluid. Because the doublets are considered closed loops, the injection fluid is assumed to eventually reach the producer well and all the produced fluid ideally comes from stream tubes connected to the injector of the well pair making up the doublet. We show that when an aquifer background flow occurs, doublets will rarely retain closed loops of fluid recirculation. When the far-field flow rate increases relative to the doublet's strength, the area occupied by the doublet will diminish and eventually vanishes. Alternatively, rather than using a single injector (source) and single producer (sink), a linear array of multiple injectors separated by some distance from a parallel array of producers can be used in geothermal energy projects as well as in waterflooding of hydrocarbon reservoirs. Fluid flow in such an arrangement of parallel source-sink arrays is shown to be macroscopically equivalent to that of a line doublet. Again, any far-field flow that is strong enough will breach through the line doublet, which then splits into two vortices. Apart from fundamental insight into elementary flow dynamics, our new results provide practical clues that may contribute to improve the planning and design of doublets and direct line drives commonly used for flow management of groundwater, geothermal and hydrocarbon reservoirs.

Description: Piscirickettsia salmonis is a fastidious intracellular pathogen responsible for high mortality rates in farmed salmonids, with serious economic consequences for the Chilean aquaculture industry. Oxytetracycline and florfenicol are the most frequently used antibiotics against P. salmonis , but routine use could contribute to drug resistance. This study identified differentiated florfenicol susceptibilities in two P. salmonis strains, LF-89 and AUSTRAL-005. The less susceptible isolate, AUSTRAL-005, also showed a high ethidium bromide efflux rate, indicating a higher activity of general efflux pump genes than LF-89. The P. salmonis genome presented resistance nodulation division (RND) family members, a family containing typical multidrug resistance-related efflux pumps in Gram-negative bacteria. Additionally, efflux pump acrAB genes were overexpressed in AUSTRAL-005 following exposure to the tolerated maximal concentration of florfenicol, in contrast to LF-89. These results indicate that tolerated maximum concentrations of florfenicol can modulate RND gene expression and increase efflux pump activity. We propose that the acrAB efflux pump is essential for P. salmonis survival at critical florfenicol concentrations and for the generation of antibiotic-resistant bacterial strains.

Description: Pseudomonas aeruginosa is an opportunistic pathogen, known to develop robust biofilms. Its biofilm development increases when antibiotics are presented at subminimal inhibitory concentrations (MICs) for reasons that remain unclear. In order to identify genes that affect biofilm development under such a sublethal antibiotic stress condition, we screened a transposon (Tn) mutant library of PAO1, a prototype P. aeruginosa strain. Among ~5000 mutants, a fiuA gene mutant was verified to form very defective biofilms in the presence of sub-MIC carbenicillin. The fiuA gene encodes ferrichrome receptor A, involved in the iron acquisition process. Of note, biofilm formation was not decreased in the pchpvd mutant defective in the production of pyochelin and pyoverdine, two well-characterized P. aeruginosa siderophore molecules. Moreover, fiuA , a non-polar fiuA deletion mutant, produced a significantly decreased level of elastase, a major virulence determinant. Mouse airway infection experiments revealed that the mutant expressed significantly less pathogenicity. Our results suggest that the fiuA gene has pleiotropic functions that affect P. aeruginosa biofilm development and virulence. The targeting of FiuA could enable the attenuation of P. aeruginosa virulence and may be suitable for the development of a drug that specifically controls the virulence of this important pathogen.

Description: In November 2010, intense seismic activity including 29 events with a magnitude above 5.0, started in the western part of the Gulf of Aden, where the structure of the oceanic spreading ridge is characterized by a series of N115°-trending slow-spreading segments set within an EW-trending rift. Using signals recorded by permanent and temporary networks in Djibouti and Yemen, we located 1122 earthquakes, with a magnitude ranging from 2.1 to 5.6 from 2010 November 1 to 2011 March 31. By looking in detail at the space–time distribution of the overall seismicity, and both the frequency and the moment tensor of large earthquakes, we re-examine the chronology of this episode. In addition, we also interpret the origin of the activity using high-resolution bathymetric data, as well as from observations of seafloor cable damage caused by high temperatures and lava flows. The analysis allows us to identify distinct active areas. First, we interpret that this episode is mainly related to a diking event along a specific ridge segment, located at E044°. In light of previous diking episodes in nearby subaerial rift segments, for which field constraints and both seismic and geodetic data exist, we interpret the space–time evolution of the seismicity of the first few days. Migration of earthquakes suggests initial magma ascent below the segment centre. This is followed by a southeastward dike propagation below the rift immediately followed by a northwestward dike propagation below the rift ending below the northern ridge wall. The cumulative seismic moment associated with this sequence reaches 9.1 x 10 17 Nm, and taking into account a very low seismic versus geodetic moment, we estimate a horizontal opening of ~0.58–2.9 m. The seismic activity that followed occurred through several bursts of earthquakes aligned along the segment axis, which are interpreted as short dike intrusions implying fast replenishment of the crustal magma reservoir feeding the dikes. Over the whole period, the opening is estimated to be ~1.76–8.8 m across the segment. A striking feature of this episode is that the seismicity remained confined within one individual segment, whereas the adjacent en-echelon segments were totally quiescent, suggesting that the magma supply system of one segment is disconnected from those of the neighbouring segments. Second, we identify activity induced by the first intrusion with epicentres aligned along an N035°E-trending, ~30 km long at the northwestern end of the active opening segment. This group encompasses more than seven earthquakes with magnitude larger than 5.0, and with strike-slip focal mechanisms consistent with the faults identified in the bathymetry and the structural pattern of the area. We propose that a transform fault is currently in formation which indicates an early stage of the ridge segmentation, at the locus of the trend change of the spreading ridge, which also corresponds to the boundary between a clear oceanic lithosphere and the zone of transform between continental and oceanic crust.

Description: We challenge the perspective that seismicity could contribute to polar motion by arguing quantitatively that, in first approximation and on the average, interseismic deformations can compensate for it. This point is important because what we must simulate and observe in Earth Orientation Parameter time-series over intermediate timescales of decades or centuries is the residual polar motion resulting from the two opposing processes of coseismic and interseismic deformations. In this framework, we first simulate the polar motion caused by only coseismic deformations during the longest period available of instrumental seismicity, from 1900 to present, using both the CMT and ISC-GEM catalogues. The instrumental seismicity covering a little longer than one century does not represent yet the average seismicity that we should expect on the long term. Indeed, although the simulation shows a tendency to move the Earth rotation pole towards 133°E at the average rate of 16.5 mm yr –1 , this trend is still sensitive to individual megathrust earthquakes, particularly to the 1960 Chile and 1964 Alaska earthquakes. In order to further investigate this issue, we develop a global seismicity model (GSM) that is independent from any earthquake catalogue and that describes the average seismicity along plate boundaries on the long term by combining information about present-day plate kinematics with the Anderson theory of faulting, the seismic moment conservation principle and a few other assumptions. Within this framework, we obtain a secular polar motion of 8 mm yr –1 towards 112.5°E that is comparable with that estimated from 1900 to present using the earthquake catalogues, although smaller by a factor of 2 in amplitude and different by 20° in direction. Afterwards, in order to reconcile the idea of a secular polar motion caused by earthquakes with our simplest understanding of the seismic cycle, we adapt the GSM in order to account for interseismic deformations and we use it to quantify, for the first time ever, their contribution to polar motion. Taken together, coseismic and interseismic deformations make the rotation pole wander around the north pole with maximum polar excursions of about 1 m. In particular, the rotation pole moves towards about Newfoundland when the interseismic contribution dominates over the coseismic ones (i.e. during phases of low seismicity or, equivalently, when most of the fault system associated with plate boundaries is locked). When megathrust earthquakes occur, instead, the rotation pole is suddenly shifted in an almost opposite direction, towards about 133°E.

Description: While elasticity is a defining characteristic of the Earth's lithosphere, it is often ignored in numerical models of long-term tectonic processes in favour of a simpler viscoplastic description. Here we assess the consequences of this assumption on a well-studied geodynamic problem: the growth of normal faults at an extensional plate boundary. We conduct 2-D numerical simulations of extension in elastoplastic and viscoplastic layers using a finite difference, particle-in-cell numerical approach. Our models simulate a range of faulted layer thicknesses and extension rates, allowing us to quantify the role of elasticity on three key observables: fault-induced topography, fault rotation, and fault life span. In agreement with earlier studies, simulations carried out in elastoplastic layers produce rate-independent lithospheric flexure accompanied by rapid fault rotation and an inverse relationship between fault life span and faulted layer thickness. By contrast, models carried out with a viscoplastic lithosphere produce results that may qualitatively resemble the elastoplastic case, but depend strongly on the product of extension rate and layer viscosity U x L . When this product is high, fault growth initially generates little deformation of the footwall and hanging wall blocks, resulting in unrealistic, rigid block-offset in topography across the fault. This configuration progressively transitions into a regime where topographic decay associated with flexure is fully accommodated within the numerical domain. In addition, high U x L favours the sequential growth of multiple short-offset faults as opposed to a large-offset detachment. We interpret these results by comparing them to an analytical model for the fault-induced flexure of a thin viscous plate. The key to understanding the viscoplastic model results lies in the rate-dependence of the flexural wavelength of a viscous plate, and the strain rate dependence of the force increase associated with footwall and hanging wall bending. This behaviour produces unrealistic deformation patterns that can hinder the geological relevance of long-term rifting models that assume a viscoplastic rheology.

Description: Activating transcription factor 3 (ATF3) is a stress-induced transcriptional regulator in eukaryote. The role of ATF3 in cancer has been well defined, but how ATF3 functions in bacterial infection is not well understood. Pneumococcal infection has been shown to induce ATF3 expression, which subsequently enhances cytokine production and provides protection from lethal Streptococcus pneumoniae infection, but the role of ATF3 in other Gram-positive (G + ) infections remains unclear. Here, we report that infection with other G + bacteria ( Staphylococcus aureus and Listeria monocytogenes ) and with G – bacteria (uropathogenic Escherichia coli ) also significantly induced ATF3 expression. Moreover, the production of cytokines (tumor necrosis factor alpha [TNF]-α, interleukin [IL]-1β, IL-6 and interferon [IFN]-) was enhanced by ATF3 in S. aureus and L. monocytogenes infection, but decreased in uropathogenic E. coli (UPEC) infection. In addition, in S. aureus and L. monocytogenes infections, ATF3 WT mice cleared bacteria more efficiently and had higher survival rates than ATF3 knockout mice. However, in UPEC infection, no significant difference was found in survival rate. Taken together, these data suggest that ATF3 provides protection from S. aureus and L. monocytogenes infections; however, the role of ATF3 in UPEC infection is more complicated and should be further elucidated.

Description: In the context of the 2014 realization of the International Terrestrial Reference Frame, the International DORIS (Doppler Orbitography Radiopositioning Integrated by Satellite) Service (IDS) has delivered to the IERS a set of 1140 weekly SINEX files including station coordinates and Earth orientation parameters, covering the time period from 1993.0 to 2015.0. From this set of weekly SINEX files, the IDS combination centre estimated a cumulative DORIS position and velocity solution to obtain mean horizontal and vertical motion of 160 stations at 71 DORIS sites. The main objective of this study is to validate the velocities of the DORIS sites by comparison with external models or time-series. Horizontal velocities are compared with two recent global plate models (GEODVEL 2010 and NNR-MORVEL56). Prior to the comparisons, DORIS horizontal velocities were corrected for Global Isostatic Adjustment from the ICE-6G (VM5a) model. For more than half of the sites, the DORIS horizontal velocities differ from the global plate models by less than 2–3 mm yr –1 . For five of the sites (Arequipa, Dionysos/Gavdos, Manila and Santiago) with horizontal velocity differences with respect to these models larger than 10 mm yr –1 , comparisons with GNSS estimates show the veracity of the DORIS motions. Vertical motions from the DORIS cumulative solution are compared with the vertical velocities derived from the latest GPS cumulative solution over the time span 1995.0–2014.0 from the University of La Rochelle solution at 31 co-located DORIS-GPS sites. These two sets of vertical velocities show a correlation coefficient of 0.83. Vertical differences are larger than 2 mm yr –1 at 23 percent of the sites. At Thule, the disagreement is explained by fine-tuned DORIS discontinuities in line with the mass variations of outlet glaciers. Furthermore, the time evolution of the vertical time-series from the DORIS station in Thule show similar trends to the GRACE equivalent water height.

Description: We have used ensemble averages of satellite-derived free-air gravity anomaly data, together with inverse modelling techniques, to determine the effective elastic thickness, T e , of circum-Pacific subducting oceanic lithosphere and its relationship to plate age. Synthetic modelling tests show that T e can be recovered best using gravity anomaly, rather than bathymetry, data and profiles that are at least 750 km long. Inverse modelling based on a uniform T e elastic plate suggests that T e increases with age of the subducting oceanic lithosphere and is given approximately by the depth to the 390 ± 10 °C oceanic isotherm based on a cooling plate model. Misfits between the observed and calculated gravity anomalies are significantly improved if a mechanically weak zone is included between the trench axis and the outer rise. This weak zone is coincident with observations of bend-faulting and seismicity. Inverse modelling shows that T e landward of the outer rise is generally 40–65 per cent less than the T e seaward of the outer rise. Both landward and seaward T e increases with age of the lithosphere and are given by the depth to the 342–349 °C and 671–714 °C oceanic isotherm, respectively. A dependence of T e on age is consistent with models for the cooling of oceanic lithosphere as it moves away from a mid-ocean ridge and the temperature-dependent ductile creep of oceanic lithospheric minerals such as olivine. By comparing the observed T e to the predicted T e based on laboratory-derived yield strength envelopes and an assumption of elastic-perfectly plastic deformation, we have attempted to constrain the rheology of oceanic lithosphere. Regardless of the assumed friction coefficient, the dry-olivine low-temperature plasticity flow laws of Goetze, Evans & Goetze, Raterron et al . and Mei et al . all provide quite a good fit to the observed T e at circum-Pacific subduction zones. This result contrasts with the Hawaiian Islands, where these flow laws are generally too strong to fit the observations. The discrepancy in rheology within Pacific plate may be caused by differences in the timescale of loading and therefore the amount of viscoelastic stress relaxation that has occurred. Other possibilities include thermal rejuvenation and magma-assisted flexure at the Hawaiian Islands.

Description: Large gaps and inconsistencies remain in published estimates of Nubia–Somalia plate motion based on reconstructions of seafloor spreading data around Africa. Herein, we use newly available reconstructions of the Southwest Indian Ridge at ~1-Myr intervals since 20 Ma to estimate Nubia–Somalia plate motion farther back in time than previously achieved and with an unprecedented degree of temporal resolution. At the northern end of the East African rift, our new estimates of Nubia–Somalia motion for six times from 0.78 Ma to 5.2 Ma differ by only 2 per cent from the rift-normal component of motion that is extrapolated from a recently estimated GPS angular velocity. The rate of rift-normal extension thus appears to have remained steady since at least 5.2 Ma. Our new rotations indicate that the two plates have moved relative to each other since at least 16 Ma and possibly longer. Motion has either been steady since at least 16 Ma or accelerated modestly between 6 and 5.2 Ma. Our Nubia–Somalia rotations predict 42.5 ± 3.8 km of rift-normal extension since 10.6 Ma across the well-studied, northern segment of the Main Ethiopian Rift, consistent with 40–50 km estimates for extension since 10.6 Myr based on seismological surveys of this narrow part of the plate boundary. Nubia–Somalia rotations are also derived by combining newly estimated Somalia–Arabia rotations that reconstruct the post-20-Ma opening of the Gulf of Aden with Nubia–Arabia rotations estimated via a probabilistic analysis of plausible opening scenarios for the Red Sea. These rotations predict Nubia–Somalia motion since 5.2 Myr that is consistent with that determined from Southwest Indian Ridge data and also predict 40 ± 3 km of rift-normal extension since 10.6 Ma across the Main Ethiopian Rift, consistent with our 42.5 ± 3.8 km Southwest Indian Ridge estimate. Our new rotations exclude at high confidence level previous estimates of 12 ± 13 and 123 ± 14 km for rift-normal extensions across the Main Ethiopian Rift since 10.6 Ma based on reconstructions of Chron 5n.2 along the Southwest Indian Ridge. Sparse coverage of magnetic reversals older than 16 Ma along the western third of the Southwest Indian Ridge precludes reliable determinations of Nubia–Somalia plate motion before 16 Ma, leaving unanswered the key question of when the motion between the two plates began.

Description: The presence of carbapenemase gene bla KPC-2 in a wide variety of plasmids, especially conjugative plasmids, is key to the rapid, worldwide spread of carbapenemase enzymes. Thirty-eight, non-duplicated, carbapenem-resistant, clinical Klebsiella pneumoniae isolates were collected, all carrying bla KPC-2 -bearing plasmids. Relaxase analysis was used to classify these plasmids; 8 and 30 plasmids belonged to the MOB P3 and MOB F12 subfamilies, respectively. Phylogenetic analysis revealed two genetic subclades in the MOB F12 subfamily and suggested that these subclades might not have originated from the same ancestor. Crossing PCR, used to sequence fully the type IV secretion system (T4SS, essential structures for conjugative plasmids) of the MOB F12 plasmids, found that T4SSs were distinctively different in certain functional genes, e.g. traS and traG. In conclusion, this study delineated the evolution of bla KPC-2 -bearing plasmids at Huashan Hospital, Shanghai, China. The plasmids bearing bla KPC-2 were diverse and the MOB F12 plasmids were dominant in clinical K. pneumoniae isolates.

Description: The TAMMAR segment of the Mid-Atlantic Ridge forms a classic propagating system centred about two degrees south of the Kane Fracture Zone. The segment is propagating to the south at a rate of 14 mm yr –1 , 15 per cent faster than the half-spreading rate. Here, we use seismic refraction data across the propagating rift, sheared zone and failed rift to investigate the crustal structure of the system. Inversion of the seismic data agrees remarkably well with crustal thicknesses determined from gravity modelling. We show that the crust is thickened beneath the highly magmatic propagating rift, reaching a maximum thickness of almost 8 km along the seismic line and an inferred (from gravity) thickness of about 9 km at its centre. In contrast, the crust in the sheared zone is mostly 4.5–6.5 km thick, averaging over 1 km thinner than normal oceanic crust, and reaching a minimum thickness of only 3.5 km in its NW corner. Along the seismic line, it reaches a minimum thickness of under 5 km. The PmP reflection beneath the sheared zone and failed rift is very weak or absent, suggesting serpentinisation beneath the Moho, and thus effective transport of water through the sheared zone crust. We ascribe this increased porosity in the sheared zone to extensive fracturing and faulting during deformation. We show that a bookshelf-faulting kinematic model predicts significantly more crustal thinning than is observed, suggesting that an additional mechanism of deformation is required. We therefore propose that deformation is partitioned between bookshelf faulting and simple shear, with no more than 60 per cent taken up by bookshelf faulting.

Description: Enteroaggregative Escherichia coli (EAEC) is an important diarrhoeal pathogen causing diseases in multiple epidemiological and clinical settings. In developing countries like India, diarrhoeal diseases are one of the major killers among paediatric population and oddly, few studies are available from Indian paediatric population on the variability of EAEC virulence genes. In this study, we examined the distribution of plasmid and chromosomal-encoded virulence determinants in EAEC isolates, and analysed cytokines response generated against EAEC with specific aggregative adherence fimbriae (AAF) type in duodenal biopsies using in vitro organ culture (IVOC) mimicking in vivo conditions. Different virulence marker combinations among strains were reflected as a function of specific adhesins signifying EAEC heterogeneity. fis gene emerged as an important genetic marker apart from aggA and aap . Further, EAEC infection in IVOC showed upregulation of IL-8, IL-1β, IL-6, TNF-α and TLR-5 expression. EAEC with AAFII induced significant TLR-5 and IL-8 response, conceivably owing to more pathogenicity markers. This study sheds light on the pattern of EAEC pathotypes prevalent in North Indian paediatric population and highlights the presence of unique virulence combinations in pathogenic strains. Thus, evident diversity in EAEC virulence and multifaceted bacteria-host crosstalk can provide useful insights for the strategic management of diarrhoeal diseases in India, where diarrhoeal outbreaks are more frequent.

Description: A Neogene magmatic reactivation of the Manihiki Plateau, a large igneous province (LIP) in the central Pacific, is studied using seismic reflection data. Igneous diapirs have been identified exclusively within a narrow WNW–ESE striking corridor in the southern High Plateau (HP), which is parallel to the Neogene Pacific Plate motion and overlaps with an extrapolation of the Society Islands Hotspot (SIH) path. The igneous diapirs are characterized by a narrow width (〉5 km), penetration of the Neogene sediments, and they become progressively younger towards the East (23–10 Ma). The magmatic source appears to be of small lateral extent, which leads to the conclusion that the diapirs represent Neogene hotspot volcanism within a LIP, and thus may be an older, previously unknown extension of the SIH track (〉4.5 Ma). Comparing hotspot volcanism within oceanic and continental lithosphere, we further conclude that hotspot volcanism within LIP crust has similarities to tectonically faulted continental crust.

Description: Coagulase-negative staphylococci are thought to act as reservoirs of antibiotic resistance genes that can be transferred to Staphylococcus aureus , thus hindering the combat of this bacterium. In this work, we analyzed the presence of plasmids conferring resistance to the antibiotic mupirocin—widely used to treat and prevent S. aureus infections in hospital environments—in nosocomial S. haemolyticus strains. About 12% of the 75 strains tested were resistant to mupirocin, and this phenotype was correlated with the presence of plasmids. These plasmids were shown to be diverse, being either conjugative or mobilizable, and capable of transferring mupirocin resistance to S. aureus . Our findings reinforce that S. haemolyticus , historically and mistakenly considered as a less important pathogen, is a reservoir of resistance genes which can be transferred to other bacteria, such as S. aureus , emphasizing the necessity of more effective strategies to detect and combat this emergent opportunistic pathogen.

Description: Emergence of races in Fusarium oxysporum f. sp. lycopersici ( Fol ) is caused by loss or mutation of at least one avirulence ( AVR ) gene. The product of AVR1 is a small protein (Avr1) secreted by Fol in tomato xylem sap during infection. This protein triggers Fol race 1 specific resistance (I) in tomato, indicating that AVR1 is an AVR gene. Deletion of AVR1 in race 1 resulted in the emergence of race 2, and an additional mutation in AVR2 generated race 3. Previously, we reported a new biotype of race 3, KoChi-1, in which AVR1 was truncated by a transposon Hormin , which suggested a new route to evolution of races in Fol . However, to date no race 2 isolate carrying Hormin -truncated AVR1 has been reported. In this report, we describe such isolates, represented by Chiba-5, in which Hormin insertion occurred in AVR1 at a position different from that in KoChi-1. AVR1 truncation in both isolates resulted in production of defective Avr1 proteins. Chiba-5 and KoChi-1 belong to different phylogenetic clades, A1 and A2, respectively, suggesting that insertion of Hormin in AVR1 in Chiba-5 and KoChi-1 occurred as independent evolutionary events.

Description: The LBIT-1200 strain of Bacillus thuringiensis was recently isolated from soil, and showed a 6.4 and 9.5 increase in toxicity, against Manduca sexta and Trichoplusia ni , respectively, compared to HD-73. However, LBIT-1200 was still highly similar to HD-73, including the production of bipyramidal crystals containing only one protein of ~130 000 kDa, its flagellin gene sequence related to the kurstaki serotype, plasmid and RepPCR patterns similar to HD-73, no production of β-exotoxin and no presence of VIP genes. Sequencing of its cry gene showed the presence of a cry1Ac -type gene with four amino acid differences, including two amino acid replacements in domain III, compared to Cry1Ac1, which may explain its higher toxicity. In conclusion, the LBIT-1200 strain is a variant of the HD-73 strain but shows a much higher toxicity, which makes this new strain an important candidate to be developed as a bioinsecticide, once it passes other tests, throughout its biotechnological development.

Description: Many mechanisms control the state of stress within Earth plates. First-order well-known mechanisms include stresses induced by lateral variations of lithospheric density structure, sublithospheric tractions, ridge push and subduction pull. In this study, we attempt to quantify the influence of these mechanisms to understand the origin of stresses in the lithosphere, choosing the African plate (TAP) as an example. A finite-element based suite, Proshell, was developed to combine several data sets, to estimate the gravitational potential energy (GPE) of the lithosphere and to calculate stresses acting on the real (non-planar) geometry of TAP. We introduce several quantitative parameters to measure the degree of fit between the model and observations. Our modelling strategy involves nine series of numerical experiments. We start with the simplest possible model and then, step by step, build it up to be a more physically realistic model, all the while discussing the influence of each additional component. The starting (oversimplified) model series (1) is based on the CRUST2 data set for the crust and a half-space-cooling approximation of the lithospheric mantle. We then describe models (series 2–5) that account for lithospheric mantle density heterogeneities to build a more reliable GPE model. The consecutive series involve basal traction from the convective mantle (series A, C) and the rheological heterogeneity of the TAP via variations in its effective elastic thickness (series B, C). The model quality reflects the increase in complexity between series with an improving match to observed stress regimes and directions. The most complex model (series D) also accounts for the bending stresses in the elastic lithosphere and achieves a remarkably good fit to observations. All of our experiments were based on the iteration of controlling parameters in order to achieve the best fit between modelled and observed stresses, always considering physically feasible values. This gives us confidence that our methodology appropriately models the stress pattern of Africa, and that it may be further applied to other plates on Earth. Our modelling approach allows us to quantify several important features controlling the lithospheric stress pattern. Even though the initial oversimplified model does not fit the observations satisfactorily, it shows how ridge push may create significant compressive stresses in the lithosphere. More complex models show the importance of the density structure of the lithosphere, specifically in the subcrustal lithosphere. The stress regime within the TAP mainly results from a global balance of masses and mass moments between continental and oceanic parts of the plate. The orientation of stresses, in turn, is influenced more by local features expressed by topographic and crustal density variations, whereas existent subcrustal density variations appear to be smoothed by the crust above. The models show that accounting separately for either basal tractions or rheological heterogeneities brings moderate improvement, but the combination of these two mechanisms results in a substantially better match between model and observations. The bending stresses caused by isostatical re-adjustment improve the model match, but they have to be analysed with caution because of their depth-dependent nature.

Description: The Red Sea and Gulf of Aden represent two young basins that formed between Africa and Arabia since the early Oligocene, floored by oceanic crust or by transitional and thinned continental crust. While in the easternmost Gulf of Aden, the rift–drift transition can be dated chron C6 (~20.1 Ma), here we show that in the Red Sea the first pulse of seafloor spreading occurred during chron C3n.2n (~4.6 Ma) around ~17.1°N (present-day coordinates) and propagated southwards from this location, separating the Danakil microplate from Arabia. It is also shown that seafloor spreading between Arabia and Nubia started later, around chron 2A (~2.58 Ma), and propagated northwards. At present, there is no magnetic evidence for the existence of a linear spreading centre in the northern Red Sea at latitudes higher than ~24°N and in the southern Red Sea below ~14.8°N. The present-day plate kinematics of this region can be described with high accuracy by a network of five interacting plates (Nubia, Arabia, Somalia, Sinai and Danakil) and six triple junctions. For times older than anomaly 2A (~2.58 Ma) and up to anomaly 3, the absence of marine magnetic anomalies between Arabia and Nubia prevents a rigorous kinematic description of the five-plates system. However, there is strong evidence that the unique changes in plate motions during the last 5 Myr were a dramatic slowdown at chron C2 (~1.77 Ma) in the spreading or extension rates along the ridge and rift axes, thereby a good representation of the real plate motions can be obtained anyway by backward extension of the oldest Arabia–Nubia and Arabia–Danakil stage rotations determined on the basis of marine magnetic anomalies, respectively, C2–C2A and C2A–C3. The proposed kinematic reconstructions are accompanied by a geodynamic explanation for the genesis of large continent–continent fracture zones at the rift–drift transition and by an analysis of the strain associated with plate motions in Afar, northeastern Egypt and Sinai.

Description: On 2016 February 6 the South Taiwan earthquake ( M w 6.4) occurred in the Meinong District of Kaohsiung, southern Taiwan, at a depth of 17 km. It caused 117 fatalities and widespread damage to infrastructures, especially in the Tainan city. To clarify the generating mechanism of this damaging earthquake, we determined high-resolution 3-D images of P - and S -wave velocity ( V P , V S ) and Poisson's ratio ( ) in the epicentral area. We used 105 712 P - and 61 250 S -wave arrival times of 8279 local earthquakes (1.5 ≤ M ≤ 6.4) recorded at 41 seismic stations in South Taiwan during 2000–2011. In the upper crust (depth ≤ 10 km), the most remarkable feature is low- V P , low- V S and high- anomalies in areas with known active faults in the southwestern and easternmost parts of Taiwan. In contrast, high- V P , high- V S and low- anomalies become dominant in the lower crust. The hypocentre of the 2016 South Taiwan earthquake is located in a boundary zone where seismic velocity and Poisson's ratio change drastically in both the horizontal and vertical directions. Furthermore, the hypocentre is underlain by a vertically elongated high- anomaly at depths of 23–40 km, which may reflect ascending fluids from the upper (or uppermost) mantle. The low- V and high- anomalies in the upper crust coincide with areas of low heat flow, negative Bouguer gravity anomaly, and low magnetotelluric resistivity, which may reflect crustal fluids contained in the young fold-and-thrust belt. These results suggest that the 2016 South Taiwan earthquake was triggered by ascending fluids from dehydration of the subducting Eurasian slab, invading into active faults with a high loading rate.

Description: Gastrointestinal (GI) leakage in Clostridium difficile -associated diarrhea (CDAD) is well known but is not routinely assessed in clinical practice. Serum (1-〉3)-β-D-glucan (BG), a fungal cell wall component used as a biomarker for invasive fungal disease, was tested in a CDAD mouse model with and without probiotics. Higher serum fluorescein isothiocyanate-dextran (FITC-dextran) and spontaneous gram-negative bacteremia, GI leakage indicators, were frequently found in CDAD mice, which died compared with those which survived. BG, serum macrophage inflammatory protein-2 and FITC-dextran but not quantitative blood bacterial count differentiated the clinical severity. Interestingly, a specific dose of Lactobacillus rhamnosus L34 attenuated CDAD and decreased serum BG and FITC-dextran, but not other parameters. BG also showed a higher area under the receiver operating characteristic curve for 7-day mortality than FITC-dextran. Fifty-five percent of CDAD mice with BG ≥ 60 pg/ml (the human negative cut-off value for invasive fungal disease) at 1 day after C. difficile gavage died within 7 days. In conclusion, s erum BG was elevated in mice with severe CDAD, an established model of GI leakage with a strong association with mortality rate. BG monitoring in patients with CDAD is of interest as both a potential prognostic tool and a therapeutic efficacy indicator.

Description: Chlamydial species are common intracellular parasites that cause various diseases, mainly characterized by persistent infection, which lead to inflammatory responses modulated by pattern recognition receptors (PRRs). The best understood PRRs are the extracellular Toll-like receptors, but recent significant advances have focused on two important proteins, NOD1 and NOD2, which are members of the intracellular nucleotide-binding oligomerization domain receptor family and are capable of triggering the host innate immune signaling pathways. This results in the production of pro-inflammatory cytokines, which is vital for an adequate host defense against intracellular chlamydial infection. NOD1/2 ligands are known to derive from peptidoglycan, and the latest research has resolved the paradox of whether chlamydial species possess this bacterial cell wall component; this finding is likely to promote in-depth investigations into the interaction between the NOD proteins and chlamydial pathogens. In this review, we summarize the basic characteristics and signal transduction functions of NOD1 and NOD2 and highlight the new research on the roles of NOD1 and NOD2 in the host defense against chlamydial infection.

Description: Two strains of Aeromonas salmonicida , YK and BG, were isolated from largemouth bronze gudgeon and northern whitefish in China, and identified as A. salmonicida subsp. salmonicida based on phylogenetic analysis of vapA and 16S rRNA gene sequences. YK and BG originated from freshwater fish, one of which belonged to the cyprinid family, and the strains showed a difference in virulence. Subsequently, we performed whole genome sequencing of the strains, and comparison of their genomic sequences to the genome of the A449 reference strain revealed various genomic rearrangements, including a new variant of the genomic island AsaGEI in BG, designated as AsaGEI2c . This is the first report on a GEI of A. salmonicida strain from China. Furthermore, both YK and BG strains contained a Tn7 transposon inserted at the same position in the chromosome. Finally, IS-dependent rearrangements on pAsa5 are deemed likely to have occurred, with omission of the resD gene in both strains as well as omission of genes related to the IncF conjugal transfer system in the YK isolate. This study demonstrates that A. salmonicida subsp. salmonicida can infect non-salmonids (cyprinids) in addition to salmonids, and that AsaGEI2c might be useful as a geographical indicator of Chinese A. salmonicida subsp. salmonicida isolates.

Description: Burkholderia pseudomallei is an intracellular Gram-negative bacterial pathogen and the causative agent of melioidosis, a widespread disease in Southeast Asia. Reactive nitrogen, in an intermediate form of nitric oxide (NO), is one of the first lines of defense used by host cells to eliminate intracellular pathogens, through the stimulation of inducible nitric oxide synthase (iNOS). Studies in phagocytotic cells have shown that the iNOS response is muted in B. pseudomallei infection, and implicated the rpoS sigma factor as a key regulatory factor mediating suppression. The liver is a main visceral organ affected by B. pseudomallei , and there is little knowledge about the interaction of liver cells and B. pseudomallei . This study investigated the induction of iNOS, as well as autophagic flux and light-chain 3 (LC3) localization in human liver (HC04) cells in response to infection with B. pseudomallei and its rpoS deficient mutant. Results showed that the rpoS mutant was unable to suppress iNOS induction and that the mutant showed less induction of autophagy and lower co-localization with LC3, and this was coupled with a lower intracellular growth rate. Combining these results suggest that B. pseudomallei rpoS is an important factor in establishing infection in liver cells.

Description: Crystallization experiments in the dendritic regime have been carried out in hypergravity conditions (from 1 to 1300 g) from an ammonium chloride solution (NH 4 Cl and H 2 O). A commercial centrifuge was equipped with a slip ring so that electric power (needed for a Peltier device and a heating element), temperature and ultrasonic signals could be transmitted between the experimental setup and the laboratory. Ultrasound measurements (2–6 MHz) were used to detect the position of the front of the mushy zone and to determine attenuation in the mush. Temperature measurements were used to control a Peltier element extracting heat from the bottom of the setup and to monitor the evolution of crystallization in the mush and in the liquid. A significant increase of solid fraction and attenuation in the mush is observed as gravity is increased. Kinetic undercooling is significant in our experiments and has been included in a macroscopic mush model. The other ingredients of the model are conservation of energy and chemical species, along with heat/species transfer between the mush and the liquid phase: boundary-layer exchanges at the top of the mush and bulk convection within the mush (formation of chimneys). The outputs of the model compare well with our experiments. We have then run the model in a range of parameters suitable for the Earth's inner core. This has shown the role of bulk mush convection for the inner core and the reason why a solid fraction very close to unity should be expected. We have also run melting experiments: after crystallization of a mush, the liquid has been heated from above until the mush started to melt, while the bottom cold temperature was maintained. These melting experiments were motivated by the possible local melting at the inner core boundary that has been invoked to explain the formation of the anomalously slow F-layer at the bottom of the outer core or inner core hemispherical asymmetry. Oddly, the consequences of melting are an increase in solid fraction and a decrease in attenuation. It is hence possible that surface seismic velocity and attenuation of the inner core are strongly affected by melting.

Description: The coupling that exists between surface processes and deformation within both the shallow crust and the deeper mantle-lithosphere has stimulated the development of computational geodynamic models that incorporate a free surface boundary condition. We introduce a treatment of this boundary condition that is suitable for staggered grid, finite difference schemes employing a structured Eulerian mesh. Our interface capturing treatment discretizes the free surface boundary condition via an interface that conforms with the edges of control volumes (e.g. a ‘staircase’ representation) and requires only local stencil modifications to be performed. Comparisons with analytic solutions verify that the method is first-order accurate. Additional intermodel comparisons are performed between known reference models to further validate our free surface approximation. Lastly, we demonstrate the applicability of a multigrid solver to our free surface methodology and demonstrate that the local stencil modifications do not strongly influence the convergence of the iterative solver.

Description: Ellesmere Island in Arctic Canada displays a complex geological evolution. The region was affected by two distinct orogenies, the Palaeozoic Ellesmerian orogeny (the Caledonian equivalent in Arctic Canada and Northern Greenland) and the Palaeogene Eurekan orogeny, related to the opening of Baffin Bay and the consequent convergence of the Greenland plate. The details of this complex evolution and the present-day deep structure are poorly constrained in this remote area and deep geophysical data are sparse. Receiver function analysis of seven temporary broad-band seismometers of the Ellesmere Island Lithosphere Experiment complemented by two permanent stations provides important data on the crustal velocity structure of Ellesmere Island. The crustal expression of the northernmost tectonic block of Ellesmere Island (~82°–83°N), Pearya, which was accreted during the Ellesmerian orogeny, is similar to that at the southernmost part, which is part of the Precambrian Laurentian (North America-Greenland) craton. Both segments have thick crystalline crust (~35–36 km) and comparable velocity–depth profiles. In contrast, crustal thickness in central Ellesmere Island decreases from ~24–30 km in the Eurekan fold and thrust belt (~79.7°–80.6°N) to ~16–20 km in the Hazen Stable Block (HSB; ~80.6°–81.4°N) and is covered by a thick succession of metasediments. A deep crustal root (~48 km) at ~79.6°N is interpreted as cratonic crust flexed beneath the Eurekan fold and thrust belt. The Carboniferous to Palaeogene sedimentary succession of the Sverdrup Basin is inferred to be up to 1–4 km thick, comparable to geologically-based estimates, near the western margin of the HSB.

Description: Joint analysis of the seismic velocities and geoid, gravity and gravity gradients are used to constrain the viscosity profile within the mantle as well as the lateral density variations. Recent ESA's Gravity field and steady-state Ocean Circulation Explorer measurements of the second-order derivatives of the Earth's gravity potential give new possibilities to determine these mantle properties. Using a simple mantle model and seismic tomography results, we investigate how the gravitational potential, the three components of the gravity vector and the gravity gradients can bring information on the radial viscosity profile and on the mantle mass anomalies. We start with lateral density variations in the Earth's mantle based either on slab history or deduced from seismic tomography. The main uncertainties are: for the latter case, the relationship between seismic velocity and density—the so-called density/velocity scaling factor—and for the former case, the variation with depth of the density contrast between the cold slabs and the surrounding mantle. We perform a Monte Carlo search for the viscosity and the density/velocity scaling factor profiles within the mantle, which allows to fit the observed geoid, gravity and gradients of gravity. We compute the posterior probability distribution of the unknown parameters, and find that the gravity gradients improve the estimate of the scaling factor within the upper mantle, because of their sensitivity to the masses within the upper mantle, whereas the geoid and the gravity better constrain the scaling factor in the lower mantle. In the upper mantle, it is less than 0.02 in the upper part and about 0.08–0.14 in the lower part, and it is significantly larger for depths greater than 1200 km (about 0.32–0.34). In any case, the density/velocity scaling factor between 670 and 1150 km depth is not well constrained. We show that the viscosity of the upper part of the mantle is strongly correlated with the viscosity of the lower part of the mantle and that the viscosity profile is characterized by a decrease in the lower part of the upper mantle (about 10 20 –2  x  10 20 Pa s) and by an increase (about 10 23 –2  x  10 23 Pa s) at the top of the lower mantle (between 670 and 1150 km). The viscosity of the mantle below 1150 km depth is well estimated in our Monte Carlo search and is about 10 22 –4  x  10 22 Pa s.

Description: Large-scale topography may be due to several causes, including (1) variations in crustal thickness and density structure, (2) oceanic lithosphere age differences, (3) subcrustal density variations in the continental lithosphere and (4) convective flow in the mantle beneath the lithosphere. The last contribution in particular may change with time and be responsible for continental inundations; distinguishing between these contributions is therefore important for linking Earth's history to its observed geological record. As a step towards this goal, this paper aims at such distinction for the present-day topography: the approach taken is deriving a ‘model’ topography due to contributions (3) and (4), along with a model geoid, using a geodynamic mantle flow model. Both lithosphere thickness and density anomalies beneath the lithosphere are inferred from seismic tomography. Density anomalies within the continental lithosphere are uncertain, because they are probably due to variations in composition and temperature, making a simple scaling from seismic to density anomalies inappropriate. Therefore, we test a number of different assumptions regarding these. As a reality check, model topography is compared, in terms of both correlation and amplitude ratio, to ‘residual’ topography, which follows from observed topography after subtracting contributions (1) and (2). The model geoid is compared to observations as well. Comparatively good agreement is found if there is either an excess density of 0.2 per cent in the lithosphere above 150 km depth, with anomalies below as inferred from tomography, or if the excess density is 0.4 per cent in the entire lithosphere. Further, a good fit is found for viscosity 10 20 Pa s in the asthenosphere, increasing to 10 23 Pa s in the lower mantle above D'. Results are quite dependent on which tomography models they are based on; for some recent ones, topography correlation is 0.6, many smaller scale features are matched, topography amplitude is less than 30 per cent too large, while geoid variance reduction exceeds 70 per cent—overall a considerable improvement compared to previous models. Correlation becomes less if smaller scale features (corresponding to spherical harmonic degrees 15 and higher), which are probably largely due to anomalies in the lithosphere, are also considered. Comparison of results with different viscosity structures, and a regional comparison of amplitude ratios, indicates that lateral viscosity variations can be quite strong, but only leading to moderate variations in model topography of a factor probably less than two.

Description: Bacteriophages are viruses that infect bacteria. There are an estimated 10 31 phage on the planet, making them the most abundant form of life. We are rapidly approaching the centenary of their identification, and yet still have only a limited understanding of their role in the ecology and evolution of bacterial populations. Temperate prophage carriage is often associated with increased bacterial virulence. The rise in use of technologies, such as genome sequencing and transcriptomics, has highlighted more subtle ways in which prophages contribute to pathogenicity. This review discusses the current knowledge of the multifaceted effects that phage can exert on their hosts and how this may contribute to bacterial adaptation during infection.

Description: Phthiocerol dimycocerosates (PDIMs) and phenolic glycolipids (PGLs) contribute to the pathogenicity of several mycobacteria. Biosynthesis of these virulence factors requires polyketide synthases and other enzymes that represent potential targets for the development of adjuvant antivirulence drugs. We used six isogenic Mycobacterium marinum mutants, each with a different gene knockout in the PDIM/PGL biosynthetic pathway, to probe the pleiotropy of mutations leading to PDIM – PGL – , PDIM + PGL – or PDIM – PGL + phenotypes. We evaluated the M. marinum mutants for changes in antibiotic susceptibility, cell envelope permeability, biofilm formation, surface properties, sliding motility and virulence in an amoeba model. The analysis also permitted us to begin exploring the hypothesis that different gene knockouts rendering the same PDIM and/or PGL deficiency phenotypes lead to M. marinum mutants with equivalent pleiotropic profiles. Overall, the results of our study revealed a complex picture of pleiotropic patterns emerging from different gene knockouts, uncovered unexpected phenotypic inequalities between mutants, and provided new insight into the phenotypic consequences of gene knockouts in the PDIM/PGL biosynthetic pathway.

Description: Culture medium from an isolate of the fungus Aspergillus candidus was extracted, fractionated and examined to discover compounds antagonistic to plant-parasitic nematodes that are important pathogens of agricultural crops. Column, thin layer and preparative chromatographies and spectral and elemental analyses, were used to isolate and identify two major constituents of an active fraction (Fraction F) obtained from the medium. Compound 1 was identified as 2-hydroxypropane-1, 2, 3-tricarboxylic acid (citric acid). Compound 2 was identified as 3-hydroxy-5-methoxy-3-(methoxycarbonyl)-5-oxopentanoic acid, an isomer of 1, 2-dimethyl citrate. Compound 1 and a citric acid standard, each tested at 50 mg mL –1 in water, decreased hatch from eggs of the plant-parasitic nematode Meloidogyne incognita by more than 94%, and completely immobilized second-stage juveniles after 4–6 days exposure. Fraction F and Compounds 1 and 2 decreased the mobility of adults of the plant-parasitic nematode Ditylenchus destructor in vitro . Fraction F (25 mg mL –1 ) inhibited mobility 〉99% at 72 hrs. Compounds 1 and 2 (50 mg mL –1 ) each inhibited mobility more than 25% at 24 hr and more than 50% at 72 hr. This is the first assignment of nematode-antagonistic properties to specifically identified A. candidus metabolites.

Description: Oblique convergence across Tibet leads to slip partitioning with the coexistence of strike-slip, normal and thrust motion on major fault systems. A key point is to understand and model how faults interact and accumulate strain at depth. Here, we extract ground deformation across the Haiyuan Fault restraining bend, at the northeastern boundary of the Tibetan plateau, from Envisat radar data spanning the 2001–2011 period. We show that the complexity of the surface displacement field can be explained by the partitioning of a uniform deep-seated convergence. Mountains and sand dunes in the study area make the radar data processing challenging and require the latest developments in processing procedures for Synthetic Aperture Radar interferometry. The processing strategy is based on a small baseline approach. Before unwrapping, we correct for atmospheric phase delays from global atmospheric models and digital elevation model errors. A series of filtering steps is applied to improve the signal-to-noise ratio across high ranges of the Tibetan plateau and the phase unwrapping capability across the fault, required for reliable estimate of fault movement. We then jointly invert our InSAR time-series together with published GPS displacements to test a proposed long-term slip-partitioning model between the Haiyuan and Gulang left-lateral Faults and the Qilian Shan thrusts. We explore the geometry of the fault system at depth and associated slip rates using a Bayesian approach and test the consistency of present-day geodetic surface displacements with a long-term tectonic model. We determine a uniform convergence rate of 10 [8.6–11.5] mm yr –1 with an N89 [81–97]°E across the whole fault system, with a variable partitioning west and east of a major extensional fault-jog (the Tianzhu pull-apart basin). Our 2-D model of two profiles perpendicular to the fault system gives a quantitative understanding of how crustal deformation is accommodated by the various branches of this thrust/strike-slip fault system and demonstrates how the geometry of the Haiyuan fault system controls the partitioning of the deep secular motion.

Description: In this paper, we study stability of the rate, state and temperature friction (RSTF) model. The Segall and Rice approach is used to model heat transfer at the sliding interface with its surroundings. The effect of pore pressure is not considered in the model to avoid the complex expression for critical stiffness. Linear stability analysis of the spring-mass sliding system is carried out with the ageing law under the quasistatic conditions in order to determine the critical stiffness above which sliding behaviour changes from unstable to stable or vice versa. Our numerical simulations establish that critical stiffness of the heated surface may increase or decrease from corresponding to the critical stiffness of the unheated surface depending on the relative values of two contradictory parameters related with velocity effect and temperature effect. Parametric studies are also carried out to understand shear velocity and temperature of the sliding surface dependence of steady friction. The RSTF model is also used to study the gravity induced failure of a creeping rock slope and the results are justified.

Description: An RNAi system based on T7 RNA polymerase (TRNAP) was designed and examined in Aspergillus fumigatus . This system consists of two elements; an inducible T7RNAP expressing cassette and an AMA1-based episomal RNAi plasmid. These constructs were transformed into the A. fumigatus protoplasts and the efficiency of this system was tested in downregulation of alb1 gene. Upon the induction of T7RNAP expression, the recombinant T7RNAP was able to recognize T7 promoters, which were located on the episomal plasmid and in opposite direction. As a result, the bidirectional transcription of alb1 fragment led to the silencing of the target gene. However, our results demonstrated that this silencing system is unstable and may not be applicable in preparation of RNAi libraries.

Description: The Siple Coast region of Antarctica contains a number of fast-flowing ice streams, which control the dynamics and mass balance of the region. These ice streams are known to undergo stagnation and reactivation cycles, which lead to ice thickness changes that may be sufficient to excite a viscous solid Earth response (glacial isostatic adjustment; GIA). This study aims to quantify Siple Coast ice thickness changes during the last 2000 yr in order to determine the degree to which they might contribute to GIA and associated present-day bedrock uplift rates. This is important because accurate modelling of GIA is necessary to determine the rate of present-day ice-mass change from satellite gravimetry. Recently-published reconstructions of ice-stream variability were used to create a suite of kinematic models for the stagnation-related thickening of Kamb Ice Stream since ~1850 AD, and a GIA model was used to predict present-day deformation rates in response to this thickening. A number of longer-term loading scenarios, which include the stagnation and reactivation of ice streams across the Siple Coast over the past 2000 yr, were also constructed, and used to investigate the longer term GIA signal in the region. Uplift rates for each of the ice loading histories, based on a range of earth models, were compared with regional GPS-observed uplift rates and an empirical GIA estimate. We estimate Kamb Ice Stream to have thickened by 70–130 m since stagnation ~165 years ago. Modelled present-day vertical motion in response to this load increase peaks at –17 mm yr –1 (i.e. 17 mm yr –1 subsidence) for the weakest earth models tested here. Comparison of the solid Earth response to ice load changes throughout the last glacial cycle, including ice stream stagnation and reactivation across the Siple Coast during the last 2000 yr, with an empirical GIA estimate suggests that the upper mantle viscosity of the region is greater than 1 x 10 20 Pa s. When upper mantle viscosity values of 1 x 10 20  Pa s or smaller are combined with our suite of ice-load scenarios we predict uplift rates across Siple Coast that are at least 4 mm yr –1 smaller than those predicted by the empirical GIA estimate. GPS data are unable to further constrain model parameters due to the distance of the GPS sites from the study area. Our results demonstrate that Late Holocene ice load changes related to the stagnation and reactivation of ice streams on the Siple Coast may play a dominant role in defining the present-day uplift signal. However, both the detailed Earth structure and deglacial history of the region need to be better constrained in order to reduce uncertainties associated with the GIA signal of this region.

Description: A simple diagnosis of the presence or absence of an infection is an uninformative metric when individuals differ considerably in their tolerance to different infection loads or resistance to rates of disease progression. Models that incorporate the relationship between the progression of the infection with the potential alternate outcomes provide a far more powerful predictive tool than diagnosis alone. The global decline of amphibians has been amplified by Batrachochytrium dendrobatidis , a pathogen that can cause the fatal disease chytridiomycosis. We measured the infection load and observed signs of disease in Litoria aurea . Receiver operating characteristic curves were used to quantify the dissimilarity between the infection loads of L. aurea that showed signs associated with chytridiomycosis and those that did not. Litoria aurea had a 78% probability of developing chytridiomycosis past a threshold of 68 zoospore equivalents (ZE) per swab and chytridiomycosis occurred within a variable range of 0.5–490 ZE. Studies should incorporate a species-specific threshold as a predictor of chytridiomycosis, rather than a binary diagnosis. Measures of susceptibility to chytridiomycosis must account not only for the ability of B. dendrobatidis to increase its abundance on the skin of amphibians but also to determine how each species tolerates these infection loads.

Description: The control and prevention of biofilm-related infections is an important public healthcare issue. Given the increasing antibiotic resistance among bacteria and fungi that cause serious infections in humans, promotion of new strategies combating microorganisms has been essential. One attractive approach to inactivate microorganisms is the use of semiconductor photo-catalysis, which has become the subject of extensive research. In this study, the bactericidal properties of four photo-catalysts, TiO 2 , TiO 2 -S, TiO 2 -Eu and TiO 2 -Eu-S, were investigated against established 24, 48, 72 and 96 h biofilms of Enterococcus . The exposure of biofilms to the catalysts induced the production of superoxide radical anions. The best photo-catalytic inactivation was achieved with the TiO 2 -Eu-S and TiO 2 -S nanopowders and 24 h biofilms. Transmission electron microscopy images showed significant changes in the structure of the biofilm cells following photo-inactivation. The results suggest that doping with europium and modifying the surface with sulphate groups enhanced the bactericidal activity of the TiO 2 nanoparticles against enterococcal biofilms.

Description: The thickness and equivalent global sea level contribution of an improved model of the central and northern Laurentide Ice Sheet is constrained by 24 relative sea level histories and 18 present-day GPS-measured vertical land motion rates. The final model, termed Laur16, is derived from the ICE-5G model by holding the timing history constant and iteratively adjusting the thickness history, in four regions of northern Canada. In the final model, the last glacial maximum (LGM) thickness of the Laurentide Ice Sheet west of Hudson Bay was ~3.4–3.6 km. Conversely, east of Hudson Bay, peak ice thicknesses reached ~4 km. The ice model thicknesses inferred for these two regions represent, respectively, a ~30 per cent decrease and an average ~20–25 per cent increase to the load thickness relative to the ICE-5G reconstruction, which is generally consistent with other recent studies that have focussed on Laurentide Ice Sheet history. The final model also features peak ice thicknesses of 1.2–1.3 km in the Baffin Island region, a modest reduction relative to ICE-5G and unchanged thicknesses for a region in the central Canadian Arctic Archipelago west of Baffin Island. Vertical land motion predictions of the final model fit observed crustal uplift rates well, after an adjustment is made for the elastic crustal response to present-day ice mass changes of regional ice cover. The new Laur16 model provides more than a factor of two improvement of the fit to the RSL data ( 2 measure of misfit) and a factor of nine improvement to the fit of the GPS data (mean squared error measure of fit), compared to the ICE-5G starting model. Laur16 also fits the regional RSL data better by a factor of two and gives a slightly better fit to GPS uplift rates than the recent ICE-6G model. The volume history of the Laur16 reconstruction corresponds to an up to 8 m reduction in global sea level equivalent compared to ICE-5G at LGM.

Description: The 2011 October 23 M W 7.1 Van earthquake in eastern Turkey caused ~600 deaths and caused widespread damage and economic loss. The seismogenic rupture was restricted to 10–25 km in depth, but aseismic surface creep, coincident with outcrop fault exposures, was observed in the hours to months after the earthquake. We combine observations from radar interferometry, seismology, geomorphology and Quaternary dating to investigate the geological slip rate and seismotectonic context of the Van earthquake, and assess the implications for continuing seismic hazard in the region. Transient post-seismic slip on the upper Van fault started immediately following the earthquake, and decayed over a period of weeks; it may not fully account for our long-term surface slip-rate estimate of ≥0.5 mm yr –1 . Post-seismic slip on the Bostanici splay fault initiated several days to weeks after the main shock, and we infer that it may have followed the M W  5.9 aftershock on the 9th November. The Van earthquake shows that updip segmentation can be important in arresting seismic ruptures on dip-slip faults. Two large, shallow aftershocks show that the upper 10 km of crust can sustain significant earthquakes, and significant slip is observed to have reached the surface in the late Quaternary, so there may be a continuing seismic hazard from the upper Van fault and the associated splay. The wavelength of folding in the hanging wall of the Van fault is dominated by the structure in the upper 10 km of the crust, masking the effect of deeper seismogenic structures. Thus, models of subsurface faulting based solely on surface folding and faulting in regions of reverse faulting may underestimate the full depth extent of seismogenic structures in the region. In measuring the cumulative post-seismic offsets to anthropogenic structures, we show that Structure-from-Motion can be rapidly deployed to create snapshots of post-seismic displacement. We also demonstrate the utility of declassified Corona mission imagery (1960s–1970s) for geomorphic mapping in areas where recent urbanization has concealed the geomorphic markers.

Description: The Pseudomonas aeruginosa Chp chemosensory system regulates twitching motility, intracellular adenosine 3 '' 5 ' -cyclic monophosphate (cAMP) levels and is postulated to be involved in directional twitching towards phosphatidylethanolamine (PE). Because PilJ is the only methyl-accepting chemotaxis protein (MCP) identified in the Chp system, we determined the role of PilJ in mediating signal transduction for the distinct outputs of this system. Mutants that lack the periplasmic domain of PilJ ( pilJ 74-273 ) showed lower levels of cAMP but retained directional twitching towards PE. While initial studies revealed reduced twitching motility by PilJ 74-273 , this was due to decreased cAMP levels. Our data illustrate the importance of the periplasmic domain of PilJ in regulating cAMP. This is the first time a defined domain within PilJ has been identified as having a distinct role in signal transduction.

Description: Histone-like nucleoid-structuring (H-NS) proteins, which are conserved in Gram-negative bacteria, bind DNA and act as the global transcriptional repressors. In this study, we identified and characterized the xrvC gene encoding a H-NS protein in Xathomonas oryzae pv. oryzae ( Xoo ) Philippines strain PXO99 A . Compared with the wild type, the xrvC -deficient mutant of PXO99 A (named PXO99 xrvC ) showed a reduced growth rate in both nutrient-rich and nutrient-limited media. Interestingly, PXO99 xrvC exhibited significantly reduced virulence on rice cultivar IRBB214, but its virulence on 31 other rice cultivars was not affected. Transcriptional analysis revealed that the expression of hrpG , hrpX and hpa1 and of 15 out of 18 tested non-TAL (transcription activator-like) effector genes was decreased significantly in the xrvC mutant compared with that in the wild type. In addition, loss of xrvC also impaired the induction of the rice susceptibility gene Os8N3 in IRBB214 by PXO99 A . Our results suggest that the xrvC gene is involved in bacterial growth, and it plays a vital role in virulence by positively regulating the expression of hrp genes and non-TAL effector genes in PXO99 A and the susceptibility gene Os8N3 in rice.

Description: In Xanthomonas oryzae pv. oryzae , the pathogen of bacterial leaf blight of rice, hrp gene expression is regulated by the key hrp regulators HrpG and HrpX. HrpG regulates hrpX and hrpA , and HrpX regulates the other hrp genes on hrpB–hrpF operons. We previously examined the expression of the HrpX-regulated hrp gene hrcU and demonstrated that hrp gene expression is highly induced in a certain nutrient-poor medium containing xylose. In the present study, we found that the induction level of HrpX-regulated hrp genes was higher in medium with xylose than in media with any other sugar sources (glucose, sucrose and fructose), but that expression of hrpG , hrpX and hrpA was independent of the sugar sources. In western blot analysis, the accumulation of HrpX was reduced in media with a sugar other than xylose, probably as a result of proteolysis, but the addition of xylose canceled this reduced accumulation of the protein. The results suggest that proteolysis of HrpX is an important hrp regulatory mechanism and that xylose specifically suppresses this proteolysis, resulting in active hrp gene expression in X. oryzae pv. oryzae .

Description: Antibiotic therapy has long term consequences in the intestinal microbiome. Clostridium difficile has a well-known role in antibiotic-associated diarrhea, but in addition, persistent infection with this organism may increase the risk for developing inflammatory bowel disease. Here, recent literature on how the intestinal microbiome is altered by antibiotic therapy is presented.

Description: Within a slab experiencing present-day lateral break-off, a particular type of earthquakes is expected to cluster at the detachment horizon tip: namely, events generated by reverse faulting, with the approximately horizontal compression involved acting along the strike of the slab. Such a cluster of moderate magnitude earthquakes (4.7 ≤  m b ≤ 5.0) was identified in this study at the 160–175 km depth range of the Vrancea seismogenic body, in the Southeast Carpathians mountains collision environment. The corresponding cluster epicentres were systematically positioned at the boundary between a region being subject ( cf. published GPS records), to present-day upward movements, and another one that underwent present-day subsidence. Such an overall setting seems to suggest that a lateral break-off is currently developing at the indicated depth within the Vrancea slab, leading to topographic uplift above the already detached slab section, and to enhanced subsidence above the section to which the gravitational slab pull was being transferred. In addition, by taking into account some systematic time correspondence which we documented between moderate magnitude events of the 160–175 km depth cluster and the subsequent strong Vrancea shocks ( M w ≥ 6.9), it appears that the latter, although occurring at much shallower depths (roughly, in the 80–140 km range), were also controlled by the break-off progress.

Description: Bajada del Diablo is located in the Northern Patagonian Massif, Chubut, Argentina. The study area includes several circular structures found in Miocene olivine basalts of the Quiñelaf Eruptive Complex and in the Late Pliocene/Early Pleistocene Pampa Sastre conglomerates. An impact origin has been proposed for these circular structures. With the aim of further investigate the proposed impact origin, topographic, gravimetric, magnetic, resistivity, palaeomagnetic and electromagnetic surveys in two circular structures (‘8’ and ‘G’) located in Pampa Sastre conglomerates and in basalts of the Quiñelaf Eruptive Complex were carried out. The new geophysical results support the hypothesis of an impact origin. However, the confirmation of such an origin through the findings of shock metamorphism evidences and/or the recovery of meteorites remains elusive.

Description: The aim of the present study was to verify whether penicillin-resistant, ampicillin-susceptible Enterococcus faecalis (PRASEF) occurred in Brazil prior to the beginning of the 21st century, and to verify whether ampicillin susceptibility can predict susceptibility to other β-lactams in E. faecalis with this inconsistent phenotype. The presence of polymorphisms in the pbp4 gene and genetic diversity among the isolates were investigated. Of 21 PRASEF analyzed, 5 (23.8%) and 4 (19.0%) were imipenem and piperacillin resistant simultaneously by disk diffusion and broth dilution respectively, contradicting the current internationally accepted standards of susceptibility testing. Sequencing of pbp4 gene revealed an amino acid substitution (Asp-573-〉Glu) in all PRASEF isolates but not in the penicillin-susceptible, ampicillin-susceptible E. faecalis . Most PRASEF (90.5%) had related pulsed-field gel electrophoresis profiles, but were different from other PRASEF described to date. Results demonstrate that penicillin-resistant, ampicillin-susceptible phenotype was already a reality in the 1990s in E. faecalis isolates in different Brazilian states, and some of these isolates were also imipenem- and piperacillin-resistant; therefore, internationally accepted susceptibility criteria cannot be applied to these isolates. According to pbp4 gene sequencing, this study suggests that a specific amino acid substitution in pbp4 gene found in all PRASEF analyzed is associated with penicillin resistance.

Description: Estimating in situ stress based on hydraulic fracturing data typically depends on interpretation of the breakdown, secondary breakdown (‘reopening’) and shut-in pressure. While it has been recognized that the near-wellbore stress field should be taken into account and that the compressibility of the injection system and the viscous flow of the fluid can diminish the accuracy of stress estimates, these issues have not been well quantified. A coupled numerical model that includes the compressibility of the injection system and the flow of a viscous fluid in a plane-strain hydraulic fracture extending from a wellbore, in an impermeable rock, and in the presence of a non-isotropic in situ stress field provides a basic tool for estimating the order of the error associated with hydraulic fracturing stress measurements under non-ideal conditions. The main findings of this work are model-based guidelines on the values of relevant dimensionless parameter groups to ensure sufficient accuracy of stress estimates that use idealized models. When these guidelines cannot be met under field conditions, the model can be further applied to obtain first-order corrections that account for compressibility, viscosity and near-wellbore effects.

Description: We consider the problem of seismic velocity change estimation using ambient noise recordings. Motivated by Zhan et al. , we study how the velocity change estimation is affected by seasonal fluctuations in the noise sources. More precisely, we consider a numerical model and introduce spatio-temporal seasonal fluctuations in the noise sources. We show that indeed, as pointed out by Zhan et al. , the stretching method is affected by these fluctuations and produces misleading apparent velocity variations which reduce dramatically the signal to noise ratio of the method. We also show that these apparent velocity variations can be eliminated by an adequate normalization of the cross-correlation functions. Theoretically we expect our approach to work as long as the seasonal fluctuations in the noise sources are uniform, an assumption which holds for closely located seismic stations. We illustrate with numerical simulations in homogeneous and scattering media that the proposed normalization significantly improves the accuracy of the velocity change estimation. Similar behaviour is also observed with real data recorded in the Aegean volcanic arc. We study in particular the volcano of Santorini during the seismic unrest of 2011–2012 and observe a decrease in the velocity of seismic waves which is correlated with GPS measured elevation.

Description: The Mycobacterium tuberculosis Rv0679c protein is a surface protein that contributes to host cell invasion. We previously showed that a single nucleotide transition of the Rv0679c gene leads to a single amino acid substitution from asparagine to lysine at codon 142 in the Beijing genotype family. In this study, we examined the immunological effect of this substitution. Several recombinant proteins were expressed in Escherichia coli and Mycobacterium smegmatis and characterized with antisera and two monoclonal antibodies named 5D4-C2 and 8G10-H2. A significant reduction of antibody binding was detected by enzyme-linked immunosorbent assay (ELISA) and western blot analysis in the Lys142-type protein. This reduction of 8G10-H2 binding was more significant, with the disappearance of a signal in the proteins expressed by recombinant mycobacteria in western blot analysis. In addition, epitope mapping analysis of the recombinant proteins showed a linear epitope by 5D4-C2 and a discontinuous epitope by 8G10-H2. The antibody recognizing the conformational epitope detected only mycobacterial Asn142-type recombinant protein. Our results suggest that a single amino acid substitution of Rv0679c has potency for antigenic change in Beijing genotype strains.

Description: Passive seismic experiment was carried out at the SW contact of the Dinarides and Pannonian basin to determine the crustal structure and velocity discontinuities. The aim of the experiment was to define the relationship between the Adriatic microplate and the Pannonian segment as a part of the European plate. Most of the temporary seismic stations were deployed in Croatia along the Alp07 profile—a part of the active-source ALP 2002 project. About 300-km-long profile stretches from Istra peninsula to the Drava river, in a WSW–ESE direction. Teleseismic events recorded on 13 temporary seismic stations along the profile were analysed by P -receiver function method. Two types of characteristic receiver functions (RF) have been identified, belonging to Dinaridic and Pannonian crusts as defined on the Alp07 profile, while in transitional zone there are both types. Three major crustal discontinuities can be identified for the Dinaridic type: sedimentary basement, intracrustal discontinuity and Mohorovičić discontinuity, whereas the Pannonian type revealed only two discontinuities. The intracrustal discontinuity was not observed in the Pannonian type, thus pointing to a single-layered crust in the Pannonian basin. Two interpretation methods were applied: forward modelling of the receiver functions and H – stacking method, and the results were compared with the active-source seismic data at deep refraction profile Alp07. The receiver function modelling has given reliable results of the Moho depths that are in accordance with the seismic refraction results at the end of the Alp07 profile, that is in the area of Pannonian crust characterized by simple crustal structure and low seismic velocities ( Vp between 5.9 and 6.2 km s –1 ). In the Dinarides and its peripheral parts, receiver function modelling regularly gives greater Moho depths, up to +15 per cent, due to more complex crustal structure. The depths of the Moho calculated by the H – stacking method vary within wide limits (±13 km), due to band limited data of short-period stations. The results at five stations have to be rejected because of huge deviations in comparison with all previous results, while at the other seven stations the Moho depths vary within ±15 per cent around the Moho discontinuity of the Alp07 profile.

Description: Megathrust earthquakes of magnitude close to 9 are followed by large-scale (thousands of km) and long-lasting (decades), significant crustal and mantle deformation. This deformation can be observed at the surface and quantified with GPS measurements. Here we report on deformation observed during the 5 yr time span after the 2010 M w 8.8 Maule Megathrust Earthquake (2010 February 27) over the whole South American continent. With the first 2 yr of those data, we use finite element modelling (FEM) to relate this deformation to slip on the plate interface and relaxation in the mantle, using a realistic layered Earth model and Burgers rheologies. Slip alone on the interface, even up to large depths, is unable to provide a satisfactory fit simultaneously to horizontal and vertical displacements. The horizontal deformation pattern requires relaxation both in the asthenosphere and in a low-viscosity channel along the deepest part of the plate interface and no additional low-viscosity wedge is required by the data. The vertical velocity pattern (intense and quick uplift over the Cordillera) is well fitted only when the channel extends deeper than 100 km. Additionally, viscoelastic relaxation alone cannot explain the characteristics and amplitude of displacements over the first 200 km from the trench and aseismic slip on the fault plane is needed. This aseismic slip on the interface generates stresses, which induce additional relaxation in the mantle. In the final model, all three components (relaxation due to the coseismic slip, aseismic slip on the fault plane and relaxation due to aseismic slip) are taken into account. Our best-fit model uses slip at shallow depths on the subduction interface decreasing as function of time and includes (i) an asthenosphere extending down to 200 km, with a steady-state Maxwell viscosity of 4.75 x 10 18 Pa s; and (ii) a low-viscosity channel along the plate interface extending from depths of 55–135 km with viscosities below 10 18 Pa s.

Description: We provide an updated present-day stress map for the Italian territory. Following the World Stress Map (WSM) Project guidelines, we list the different stress indicators, explaining the criteria used to select data. We discuss the data, which will also be included in the 2016 release of the WSM, highlighting the areas for which we have added stress information. Our map displays the minimum horizontal stress orientations inferred from crustal stress indicators down to 40 km depth using data of A–C quality, updated for earthquakes until December 2015. We have completely reviewed all data, and the data set now contains 855 entries, in contrast to the previous 715. The number of data with A–C quality of 630 corresponds to an increase of 26 per cent relative to the previous data set. In particular, the new data set contains the results of the analysis of borehole breakouts, critically reviewed data from earthquake focal mechanisms, data concerning active faults, formal inversions of focal mechanisms of seismic sequences or of restricted areas and one stress determination from overcoring. The new data set defines the stress field in areas not well covered by the previous data: the region north to the Po Plain and the central Adriatic sea, both characterized by a thrust- and strike-faulting regime, the northern Sicilian belt with a prevailing normal-faulting regime, and the Ionian sea with a strike-slip regime.

Description: Listeria monocytogenes possesses the highest number of leucine-rich repeat (LRR)-containing proteins among all Gram-positive bacteria; these LRR-containing molecules are known as the ‘internalin’ family. To understand the functions of largely uncharacterized LRR-containing molecules, we constructed seven deletion mutants in the L. monocytogenes H7858 strain targeting genes in this family and tested their virulence. Among the seven mutants, the LMOh7858_0369 strain and the LMOh7858_2546 strain showed significantly impaired invasiveness of HepG2 cells. We further tested the virulence of these two strains in the intravascular sepsis model using BALB/c mice. Interestingly, the LMOh7858_0369 strain showed significant reduction in organ colonization, bacteremia and invasion of the brain compared with the parental wild-type strain. Host immune responses to listerial intravascular infection were measured at 24 and 72 h post-infection. Transcript levels of several proinflammatory cytokines and chemokines were significantly lower when induced by the lmOh7858_0369 strain than when induced by the wild type. These results suggest that the putative LRR-containing protein encoded by LMOh7858_0369 might be a novel virulence factor of the L. monocytogenes H7858 strain.

Description: Several Gram-positive pathogens scavenge host-derived heme to satisfy their nutritional iron requirement. However, heme is a toxic molecule capable of damaging the bacterial cell. Gram-positive pathogens within the phylum Firmicutes overcome heme toxicity by sensing heme through HssRS, a two-component system that regulates the heme detoxification transporter HrtAB. Here we show that heme sensing by HssRS and heme detoxification by HrtAB occur in the insect pathogen Bacillus thuringiensis . We find that in B. thuringiensis , HssRS directly regulates an operon, hrmXY , encoding hypothetical membrane proteins that are not found in other Firmicutes with characterized HssRS and HrtAB systems. This novel HssRS-regulated operon or its orthologs BMB171_c3178 and BMB171_c3330 are required for maximal heme resistance. Furthermore, the activity of HrmXY is not dependent on expression of HrtAB. These results suggest that B. thuringiensis senses heme through HssRS and induces expression of separate membrane-localized systems capable of overcoming different aspects of heme toxicity.

Description: The aim of this study was to understand the pathogenesis of motile aeromonas septicemia caused by an emergent, high virulent Aeromonas hydrophila (vAh) in channel catfish, Ictalurus punctatus . Adipose fin clipped catfish were challenged with vAh using a waterborne challenge method, and the distribution of vAh over a time course was detected and quantified using real-time polymerase chain reaction. The results showed that 77.8% of fish died within 48 h post challenge with mean day to death of 1.5 days. At 2 h post challenge, vAh (inferred from genomic DNA copies or genome equivalents) was detected in all external and internal tissues sampled. Gill had the highest vAh cells at 1 h post challenge. Spleen harbored the most vAh cells among internal organs at 4 h post challenge. The tissues/organs with most vAh cells detected at 8 h post challenge were adipose fin, blood, intestine, kidney and skin, while liver showed the highest vAh cells at 24 h post challenge. These results suggest that vAh was able to rapidly proliferate and spread, following wound infection, through the fish blood circulation system and cause mortality within 8–24 h.

Description: The major Staphylococcus aureus autolysin, Atl, has been implicated in attachment to surfaces and release of extracellular DNA during biofilm formation under laboratory conditions. Consistent with this, polyclonal antibodies to the amidase and glucosaminidase domains of Atl inhibited in vitro biofilm formation. However, in a murine model of device-related infection the community-associated S. aureus strain USA300 LAC JE2 established a successful infection in the absence of atl . These data indicate that Atl activity is not required for biofilm production in this infection model and reveal the importance of characterizing the contribution of biofilm phenotypes to virulence under in vivo conditions.

Description: Measurements of the velocity field associated with plumes rising through a viscous fluid are performed using stereoscopic Particle-Image Velocimetry in the Rayleigh number range 4.4 x 10 5 –6.4 x 10 5 . The experimental model is analogous to a mantle plume rising from the core–mantle boundary to the base of the lithosphere. The behaviour of the plume is studied throughout its life cycle, which is broken up into four stages; the Formation Stage, when the plume forms; the Rising Stage, when the plume rises through the fluid; the Spreading Stage, when the plume reaches the surface and spreads; and finally the Declining Stage, when the heat source has been removed and the plume weakens. The latter three stages are examined in terms of the Finite-Time Lyapunov Exponent fields and the advection of passive tracers throughout the flow. The temperature at the heater and near the fluid surface are measured using thermocouples to infer how the presence of a mantle plume would produce excess temperature near the lithosphere throughout the various stages of its life cycle. In all experiments, a time lag is observed between the removal of the heat source and the decline in the excess temperature near the surface, which is proportional to the rise time. A simple analytical model is presented, which suggests that under mantle conditions (i.e. negligible thermal diffusion), the relationship between the time lag and the rise time is robust and independent of the Rayleigh number; however, the constant of proportionality is closer to unity in the absence of diffusion. Once the heat source is removed, the excess temperature near the surface declines exponentially at a rate that is inversely proportional to the rise time. The implications of this result are discussed in terms of the decline in volcanism in the Louisville hotspot chain over the past 20 Ma. The rise velocity of material in the plume is examined; the rise velocity is found to vary significantly with the plume height in a manner that is inconsistent with many of the common semi-analytical models of thermal plumes in the literature. It is also argued that this height dependency will cause estimates of the rise velocity based on the decay series of uranium isotopes to significantly underestimate the true value.

Description: The Makran subduction zone is one of the last convergent margins to be investigated using space-based geodesy. While there is a lack of historical and modern instrumentation in the region, a sparse sampling of continuous and campaign measurements over the past decade has allowed us to make the first estimates of convergence rates. We combine GPS measurements from 20 stations located in Iran, Pakistan and Oman along with hypocentral locations from the International Seismological Centre to create a preliminary 3-D estimate of the geometry of the megathrust, along with a preliminary fault-coupling model for the Makran subduction zone. Using a convergence rate which is strongly constrained by measurements from the incoming Arabia plate along with the backslip method of Savage, we find the Makran subduction zone appears to be locked to a depth of at least 38 km and accumulating strain.We also find evidence for a segmentation of plate coupling, with a 300 km long section of reduced plate coupling. The range of acceptable locking depths from our modelling and the 900 km along-strike length for the megathrust, makes the Makran subduction zone capable of earthquakes up to M w  = 8.8. In addition, we find evidence for slow-slip-like transient deformation events on two GPS stations. These observations are suggestive of transient deformation events observed in Cascadia, Japan and elsewhere.

Description: We present numerical models of mantle dynamics forced by plate velocities history in the last 450 Ma. The lower-mantle rheology and the thickness of a dense basal layer are systematically varied and several initial procedures are considered for each case. For some cases, the dependence on the mantle convection vigour is also examined. The resulting evolution of the CMB heat flux is analysed in terms of criteria to promote or inhibit reversals inferred from numerical dynamos. Most models present a rather dynamic lower mantle with the emergence of two thermochemical piles towards present-day. Only a small minority of models present two stationary piles over the last 450 Myr. At present-day, the composition field obtained in our models is found to correlate better with tomography than the temperature field. In addition, the temperature field immediately at the CMB (and thus the heat flux pattern) slightly differs from the average temperature field over the 100-km thick mantle layer above it. The evolution of the mean CMB heat flux or of the amplitude of heterogeneity seldom presents the expected correlation with the evolution of the palaeomagnetic reversal frequency suggesting these effects cannot explain the observations. In contrast, our analysis favours ‘inertial control’ on the geodynamo associated with polar cooling and in some cases break of Taylor columns in the outer core as sources of increased reversal frequency. Overall, the most likely candidates among our mantle dynamics models involve a viscosity increase in the mantle equal or smaller than 30: models with a discontinuous viscosity increase at the transition zone tend to agree better at present-day with observations of seismic tomography, but models with a gradual viscosity increase agree better with some of the criteria proposed to affect reversal frequency.

Description: Lateral viscosity variations (LVVs) in the mantle influence geodynamic processes and their surface expressions. With the observed long-wavelength geoid, free-air anomaly, gravity gradient in three directions and discrete, high-accuracy residual topography, we invert for depth- and temperature-dependent and tectonically regionalized mantle viscosity with a mantle flow model. The inversions suggest that long-wavelength gravitational and topographic signals are mainly controlled by the radial viscosity profile; the pre-Cambrian lithosphere viscosity is slightly (~ one order of magnitude) higher than that of oceanic and Phanerozoic lithosphere; plate margins are substantially weaker than plate interiors; and viscosity has only a weak apparent, dependence on temperature, suggesting either a balancing between factors or a smoothing of actual higher amplitude, but short wavelength, LVVs. The predicted large-scale lithospheric stress regime (compression or extension) is consistent with the world stress map (thrust or normal faulting). Both recent compiled high-accuracy residual topography and the predicted dynamic topography yield ~1 km amplitude long-wavelength dynamic topography, inconsistent with recent studies suggesting amplitudes of ~100 to ~500 m. Such studies use a constant, positive admittance (transfer function between topography and gravity), in contrast to the evidence which shows that the earth has a spatially and wavelength-dependent admittance, with large, negative admittances between ~4000 and ~10 4 km wavelengths.

Description: Edwardsiella tarda is distributed widely in a variety of hosts. Eha has recently been found to be its virulence regulator. In order to explore the mechanism of its regulation, we investigated the survival rates of wild type strain ET13, and its eha mutant and complemented strains in RAW264.7 macrophages under light microscopic observation as well as by counting bacterial CFUs on the plates. All of the different strains could live within the macrophages; however, the intracellular numbers of the wild type were significantly higher than the mutant when the incubation time extended 4 h or 6 h ( P 〈 0.05). Furthermore, more ROS were produced by the mutant-infected cells, indicating that Eha may enhance ET13's capacity to detoxify ROS. In agreement with this, we found that the mutant exhibited more sensitivity by H 2 O 2 disk inhibitory assay and less survival ability with H 2 O 2 treatment. We further demonstrated that the bacterial antioxidant enzymes SodC and KatG were regulated by Eha with qRT-PCR and β -galactosidase assay. Collectively, our data show Eha is required for E. tarda to resist the oxidative stress from the macrophages.

Description: We present a new, computationally efficient numerical method to simulate global seismic wave propagation in realistic 3-D Earth models. We characterize the azimuthal dependence of 3-D wavefields in terms of Fourier series, such that the 3-D equations of motion reduce to an algebraic system of coupled 2-D meridian equations, which is then solved by a 2-D spectral element method (SEM). Computational efficiency of such a hybrid method stems from lateral smoothness of 3-D Earth models and axial singularity of seismic point sources, which jointly confine the Fourier modes of wavefields to a few lower orders. We show novel benchmarks for global wave solutions in 3-D structures between our method and an independent, fully discretized 3-D SEM with remarkable agreement. Performance comparisons are carried out on three state-of-the-art tomography models, with seismic period ranging from 34 s down to 11 s. It turns out that our method has run up to two orders of magnitude faster than the 3-D SEM, featured by a computational advantage expanding with seismic frequency.

Description: We report on a study to explore the deep electrical conductivity structure of the Dead Sea Basin (DSB) using magnetotelluric (MT) data collected along a transect across the DSB where the left lateral strike-slip Dead Sea transform (DST) fault splits into two fault strands forming one of the largest pull-apart basins of the world. A very pronounced feature of our 2-D inversion model is a deep, subvertical conductive zone beneath the DSB. The conductor extends through the entire crust and is sandwiched between highly resistive structures associated with Precambrian rocks of the basin flanks. The high electrical conductivity could be attributed to fluids released by dehydration of the uppermost mantle beneath the DSB, possibly in combination with fluids released by mid- to low-grade metamorphism in the lower crust and generation of hydrous minerals in the middle crust through retrograde metamorphism. Similar high conductivity zones associated with fluids have been reported from other large fault systems. The presence of fluids and hydrous minerals in the middle and lower crust could explain the required low friction coefficient of the DST along the eastern boundary of the DSB and the high subsidence rate of basin sediments. 3-D inversion models confirm the existence of a subvertical high conductivity structure underneath the DSB but its expression is far less pronounced. Instead, the 3-D inversion model suggests a deepening of the conductive DSB sediments off-profile towards the south, reaching a maximum depth of approximately 12 km, which is consistent with other geophysical observations. At shallower levels, the 3-D inversion model reveals salt diapirism as an upwelling of highly resistive structures, localized underneath the Al-Lisan Peninsula. The 3-D model furthermore contains an E–W elongated conductive structure to the northeast of the DSB. More MT data with better spatial coverage are required, however, to fully constrain the robustness of the above-mentioned off-profile features.

Description: Estimating how topography is maintained provides insights into the different factors responsible for surface deformations and their relative roles. Here, we develop a new and simple approach to assess the degree of isostatic compensation of continental topography at regional scale from GOCE gravity gradients. We calculate the ratio between the radial gradient observed by GOCE and that calculated from topography only. From analytical and statistical formulations, simple relationships between this ratio and the degree of compensation are obtained under the Airy–Heiskanen isostasy hypothesis. Then, a value of degree of compensation at each point of study area can be easily deduced. We apply our method to the Alaska-Canada Cordillera and validate our results by comparison with a standard isostatic gravity anomaly model and additional geophysical information for this area. Both our GOCE-based results and the isostatic anomaly show that Airy–Heiskanen isostasy prevails for the Yukon Plateau whereas additional mechanisms are required to support topography below the Northwest Territories Craton and the Yakutat collision zone.

Description: Bayesian sampling based inversions require many thousands or even millions of forward models, depending on how nonlinear or non-unique the inverse problem is, and how many unknowns are involved. The result of such a probabilistic inversion is not a single ‘best-fit’ model, but rather a probability distribution that is represented by the entire model ensemble. Often, a geophysical inverse problem is non-unique, and the corresponding posterior distribution is multimodal, meaning that the distribution consists of clusters with similar models that represent the observations equally well. In these cases, we would like to visualize the characteristic model properties within each of these clusters of models. However, even for a moderate number of inversion parameters, a manual appraisal for a large number of models is not feasible. This poses the question whether it is possible to extract end-member models that represent each of the best-fit regions including their uncertainties. Here, I show how a machine learning tool can be used to characterize end-member models, including their uncertainties, from a complete model ensemble that represents a posterior probability distribution. The model ensemble used here results from a nonlinear geodynamic inverse problem, where rheological properties of the lithosphere are constrained from multiple geophysical observations. It is demonstrated that by taking vertical cross-sections through the effective viscosity structure of each of the models, the entire model ensemble can be classified into four end-member model categories that have a similar effective viscosity structure. These classification results are helpful to explore the non-uniqueness of the inverse problem and can be used to compute representative data fits for each of the end-member models. Conversely, these insights also reveal how new observational constraints could reduce the non-uniqueness. The method is not limited to geodynamic applications and a generalized MATLAB code is provided to perform the appraisal analysis.

Description: Inference of the mantle viscosity from observations for glacial isostatic adjustment (GIA) process has usually been conducted through the analyses based on the simple three-layer viscosity model characterized by lithospheric thickness, upper- and lower-mantle viscosities. Here, we examine the viscosity structures for the simple three-layer viscosity model and also for the two-layer lower-mantle viscosity model defined by viscosities of 670, D (670- D km depth) and D ,2891 ( D -2891 km depth) with D -values of 1191, 1691 and 2191 km. The upper-mantle rheological parameters for the two-layer lower-mantle viscosity model are the same as those for the simple three-layer one. For the simple three-layer viscosity model, rate of change of degree-two zonal harmonics of geopotential due to GIA process (GIA-induced 2 ) of –(6.0–6.5)  x  10 –11 yr –1 provides two permissible viscosity solutions for the lower mantle, (7–20)  x  10 21 and (5–9)  x  10 22  Pa s, and the analyses with observational constraints of the 2 and Last Glacial Maximum (LGM) sea levels at Barbados and Bonaparte Gulf indicate (5–9)  x  10 22  Pa s for the lower mantle. However, the analyses for the 2 based on the two-layer lower-mantle viscosity model only require a viscosity layer higher than (5–10)  x  10 21  Pa s for a depth above the core–mantle boundary (CMB), in which the value of (5–10)  x  10 21  Pa s corresponds to the solution of (7–20)  x  10 21  Pa s for the simple three-layer one. Moreover, the analyses with the 2 and LGM sea level constraints for the two-layer lower-mantle viscosity model indicate two viscosity solutions: 670,1191  〉 3  x  10 21 and 1191,2891  ~ (5–10)  x  10 22  Pa s, and 670,1691  〉 10 22 and 1691,2891  ~ (5–10)  x  10 22  Pa s. The inferred upper-mantle viscosity for such solutions is (1–4)  x  10 20  Pa s similar to the estimate for the simple three-layer viscosity model. That is, these analyses require a high viscosity layer of (5–10)  x  10 22  Pa s at least in the deep mantle, and suggest that the GIA-based lower-mantle viscosity structure should be treated carefully in discussing the mantle dynamics related to the viscosity jump at ~670 km depth. We also preliminarily put additional constraints on these viscosity solutions by examining typical relative sea level (RSL) changes used to infer the lower-mantle viscosity. The viscosity solution inferred from the far-field RSL changes in the Australian region is consistent with those for the 2 and LGM sea levels, and the analyses for RSL changes at Southport and Bermuda in the intermediate region for the North American ice sheets suggest the solution of 670, D  〉 10 22 , D ,2891  ~ (5–10)  x  10 22  Pa s ( D  = 1191 or 1691 km) and upper-mantle viscosity higher than 6  x  10 20  Pa s.

Description: Direct interaction between pathogens and host cells often is a prerequisite for colonization, infection and dissemination. Regulated production of capsular polysaccharide (CPS), which is made of hyaluronic acid, is essential for the pathogenicity of Streptococcus equi subsp. Zooepidemicus (SEZ). Here, we constructed a CPS-deleted mutant and analyzed it along with the parental wild-type strain in attachment and invasion of mammalian epithelial and endothelial cell lines. The CPS-deleted mutant exhibited significant increase in adherence and invasion by several orders of magnitude compared with the wild-type strain through quantitative analysis and electron microscopy observation. After the wild-type strain was recovered from invaded cells, its morphology was analyzed by visual methods and scanning electron microscopy, which revealed that its capsule was almost completely absent. Capsule measurements showed a similar result in which CPS production was nearly attenuated to the same extent as in the CPS-deleted mutant. qPCR assays revealed a marked reduction in the transcriptional levels of the CPS biosynthesis genes, has operon. Moreover, the repression in capsular production was stable inheritance. Our findings indicate that SEZ is a facultative intracellular bacterium, capsule attenuation in SEZ contributes to attachment and invasion in interactions with host cells, and the active regulation of capsule breakdown is controlled by SEZ during internalization.

Description: Mid-crustal conductors are a common phenomenon in magnetotelluric studies. In the Andean Cordillera of southern Chile, they appear to concentrate along major fault zones. A high-resolution, broad-band magnetotelluric survey including 31 stations has been carried out along two profiles perpendicular to (1) the Liquiñe-Ofqui Fault Systems (LOFS) and (2) the Villarrica-Quetrupillán-Lanín volcanic lineament running parallel to the Mocha-Villarrica Fault Zone (MVFZ). The survey aimed at tracing one of the known conductors from mid-crustal depth to near-surface along these faults. Directionality and dimensionality were analysed using tensor decomposition. Phase tensors and induction arrows reveal two major geoelectric strike directions following the strike of LOFS and MVFZ. 2-D inversion shows low resistivity zones along both fault systems down to a depth of 〉10 km, where the brittle-ductile transition is expected. Along the LOFS, the two anomalies are linked to (1) Lake Caburgua, where the LOFS broadens to about 2 km of lateral extension and seems to represent a pull-apart structure, and (2) the intersection with the Villarrica-Quetrupillán-Lanín volcanic lineament, where seismic activity was observed during the latest eruption in March 2015. A connection of the mid-crustal conductor to the ESE-WNW-striking fault zones is indicated from the presented data.

Description: We present new rotations that describe the relative positions and velocities of the Pacific and North America plates at 22 times during the past 19.7 Myr, offering 1-Myr temporal resolution for studies of the geotectonic evolution of western North America and other plate boundary locations. Derived from 18 000 magnetic reversal, fracture zone and transform fault identifications from the Pacific–Antarctic–Nubia–North America plate circuit and the velocities of 935 GPS sites on the Pacific and North America plates, the new rotations and GPS-derived angular velocity indicate that the rate of motion between the two plates increased by 70 per cent from 19.7 to 9±1 Ma, but changed by less than 2 per cent since 8 Ma and even less since 4.2 Ma. The rotations further suggest that the relative plate direction has rotated clockwise for most of the past 20 Myr, with a possible hiatus from 9 to 5 Ma. This conflicts with previously reported evidence for a significant clockwise change in the plate direction at 8–6 Ma. Our new rotations indicate that Pacific plate motion became obliquely convergent with respect to the San Andreas Fault of central California at 5.2–4.2 Ma, in agreement with geological evidence for a Pliocene onset of folding and faulting in central California. Our reconstruction of the northern Gulf of California at 6.3 Ma differs by only 15–30 km from structurally derived reconstructions after including 3–4 km Myr –1 of geodetically measured slip between the Baja California Peninsula and Pacific plate. This implies an approximate 15–30 km upper bound for plate non-rigidity integrated around the global circuit at 6.3 Ma. A much larger 200±54 km discrepancy between our reconstruction of the northern Gulf of California at 12 Ma and that estimated from structural and marine geophysical observations suggests that faults in northwestern Mexico or possibly west of the Baja California Peninsula accommodated large amounts of obliquely divergent dextral shear from 12–6.3 Ma. Pacific–North America plate motion since 16 Myr estimated with our new rotations agrees well with structurally summed deformation along two transects of western North America between the Colorado Plateau and western California, with a difference as small as 40 km out of 760 km of margin-parallel motion. A strong resemblance between a 20-Myr-to-present flow line reconstructed with our new rotations and the traces of the 700-km-long Queen Charlotte Fault and continental slope west of Canada suggests that the plate margin geometry was influenced by the passage of the Pacific plate and Yakutat block. The new rotations also suggest that (1) oblique convergence west of Canada initiated at 12–11 Ma, 5–8 Myr earlier than previously estimated, (2) no significant margin-normal shortening has occurred in areas of Canada located east of the Haida Gwaii archipelago since 20 Ma and (3) Pacific plate underthrusting of Haida Gwaii has accommodated the margin-normal component of plate motion since 12–11 Ma. Our rotations suggest an 70 per cent increase in the rate that the Pacific plate has been consumed by subduction beneath the Aleutian arc since 19.7 Ma, with still-unknown consequences for the rate of arc magmatism.

Description: Described are results of laboratory experiments which revealed regularities of gradual transition from stick-slip mode to aseismic creep. The behaviour of model gouge-filled fault was investigated with experimental setup of the spring-bock model. It was experimentally proven that small variations of a percentage of materials with velocity strengthening and velocity weakening properties in the fault principal slip zone may result in significant variation of the portion of seismic energy radiated during a fault slip event. The tests simulated different modes of interblock sliding whose characteristic values of scaled kinetic energy varied by several orders of magnitude, while differences in contact strength and shear stress drop remained relatively small. The obtained results led to the conclusion that the earthquake radiation efficiency and the fault slip mode are governed by the ratio of two parameters—maximum fault slip-weakening rate and shear stiffness of the enclosing massif. The ratio can be essentially changed by small variations of the material composition of the fault principal slip zone.

Description: Among the outstanding tectonic questions regarding the convergence between the Tien Shan and Tarim basin in northwestern China are the manner in which deformation is accommodated within their lithospheres, and the extent that the Tarim lithosphere underthrusts the Tien Shan. In particular, the amount and type of deformation within the Tarim basin is poorly understood. It is also uncertain if the convergence between the Tarim and the Tien Shan takes place mainly along a discrete boundary, or if the Tarim lithosphere simply indents into the Kazach shield, forming the Tien Shan through crustal thickening accommodated by a distributed series of thrust faults. In this study we use hypocentres from published earthquake catalogues and waveforms recorded by regional seismic networks to determine earthquake source parameters through regional centroid moment tensor inversion. The entire dataset consists of 160 earthquakes that occurred between 1969 and 2009 and with moment magnitudes between 3.5 and 7 distributed throughout the central Tien Shan and northwestern Tarim Basin. The estimated focal depths of these earthquakes range from the near-surface to about 44 km. Focal mechanisms throughout much of the Tien Shan indicate active deformation accommodated by thrust faults from at least the upper crust to 30 km depth. South of the Tien Shan, the Jia-shi earthquake sequence within the Tarim basin suggests that both crustal shortening and localized flexure are part of a complicated process involving rotational convergence. Inside the Tarim basin, two earthquakes with thrust faulting mechanisms near the crust–mantle boundary beneath the Bachu uplift imply a brittle rheology of the lower crust. High-angle thrust events occur broadly across the Tien Shan, suggesting that the Tarim lithosphere as a whole is strong and indents into the Kazach shield to create the mountain range.

Description: The subduction of lithospheric plates is partitioned between subducting plate motion and lateral slab migration (i.e. trench retreat and advance). We use 3-D, dynamic models of subduction to address the role of a power-law mantle viscosity on subduction dynamics and, in particular, rates of trench retreat. For all numerical models tested, we find that a power-law rheology results in reduced rates of trench retreat, and elevated slab dip angles, relative to the equivalent isoviscous mantle model. We analyse the asthenospheric pressure distribution and the style of mantle flow, which exhibits only limited variability as a function of mantle rheology, in order to compute estimates of the mantle forces associated with subduction. The inclusion of a power-law rheology reduces the mantle shear force (which resists subducting plate motion) to a greater degree than it reduces the dynamic pressure gradient across the slab (which resists trench retreat). Therefore, the inclusion of a power-law mantle rheology favours a shift towards a subduction mode with a reduced trench retreat component, typically a relative reduction of order 25 per cent in our 3-D models. We suggest that this mechanism may be of importance for reducing the high trench retreat rates observed in many previous models to levels more in line with the average subduction partitioning observed on Earth at present (i.e. trench velocity ≤ plate velocity), for most absolute plate motion reference frames.

Description: Pulverized rocks (PR) are extremely incohesive and highly fractured rocks found within the damage zones of several large strike-slip faults around the world. They maintain their crystal structure, show little evidence of shearing or chemical alteration, and are believed to be produced by strong tensile forces. Several mechanisms for pulverization have been proposed based on simple qualitative analyses or laboratory experiments under simplified loading conditions. Numerical modelling, however, can offer new insights into what is needed to produce PR and likely conditions of formation. We perform dynamic rupture simulations of different earthquakes, varying the magnitude, the slip distribution, and the rupture speed (supershear and subshear), while measuring the stresses produced away from the fault. To contextualize our results, a basic threshold of 10 MPa is set as the tensile strength of the rock mass and recordings are made of where, when, and by how much this threshold is exceeded for each earthquake type. Guided by field observations, we discern that a large (〉 M w 7.1) subshear earthquake along a bimaterial fault produces a pulverized rock distribution most consistent with observations. The damage is asymmetric with the majority on the stiffer side of the fault extending out for several hundred metres. Within this zone there is a large and sudden volumetric expansion in all directions as the rupture passes. We propose that such an extreme tensile stress state, repeated for every earthquake, eventually produces the PR seen in the field.

Description: Kinematics of divergent boundaries and Rift-Rift-Rift junctions are classically studied using long-term geodetic observations. Since significant magma-related displacements are expected, short-term deformation provides important constraints on the crustal mechanisms involved both in active rifting and in transfer of extensional deformation between spreading axes. Using InSAR and GPS data, we analyse the surface deformation in the whole Central Afar region in detail, focusing on both the extensional deformation across the Quaternary magmato-tectonic rift segments, and on the zones of deformation transfer between active segments and spreading axes. The largest deformation occurs across the two recently activated Asal-Ghoubbet (AG) and Manda Hararo-Dabbahu (MH-D) magmato-tectonic segments with very high strain rates, whereas the other Quaternary active segments do not concentrate any large strain, suggesting that these rifts are either sealed during interdyking periods or not mature enough to remain a plate boundary. Outside of these segments, the GPS horizontal velocity field shows a regular gradient following a clockwise rotation of the displacements from the Southeast to the East of Afar, with respect to Nubia. Very few shallow creeping structures can be identified as well in the InSAR data. However, using these data together with the strain rate tensor and the rotations rates deduced from GPS baselines, the present-day strain field over Central Afar is consistent with the main tectonic structures, and therefore with the long-term deformation. We investigate the current kinematics of the triple junction included in our GPS data set by building simple block models. The deformation in Central Afar can be described by adding a central microblock evolving separately from the three surrounding plates. In this model, the northern block boundary corresponds to a deep EW-trending trans-tensional dislocation, locked from the surface to 10–13 km and joining at depth the active spreading axes of the Red Sea and the Aden Ridge, from AG to MH-D rift segments. Over the long-term, this plate configuration could explain the presence of the en-échelon magmatic basins and subrifts. However, the transient behaviour of the spreading axes implies that the deformation in Central Afar evolves depending on the availability of magma supply within the well-established segments.

Description: Volcanic crises are often preceded and accompanied by volcano deformation caused by magmatic and hydrothermal processes. Fast and efficient model identification and parameter estimation techniques for various sources of deformation are crucial for process understanding, volcano hazard assessment and early warning purposes. As a simple model that can be a basis for rapid inversion techniques, we present a compound dislocation model (CDM) that is composed of three mutually orthogonal rectangular dislocations (RDs). We present new RD solutions, which are free of artefact singularities and that also possess full rotational degrees of freedom. The CDM can represent both planar intrusions in the near field and volumetric sources of inflation and deflation in the far field. Therefore, this source model can be applied to shallow dikes and sills, as well as to deep planar and equidimensional sources of any geometry, including oblate, prolate and other triaxial ellipsoidal shapes. In either case the sources may possess any arbitrary orientation in space. After systematically evaluating the CDM, we apply it to the co-eruptive displacements of the 2015 Calbuco eruption observed by the Sentinel-1A satellite in both ascending and descending orbits. The results show that the deformation source is a deflating vertical lens-shaped source at an approximate depth of 8 km centred beneath Calbuco volcano. The parameters of the optimal source model clearly show that it is significantly different from an isotropic point source or a single dislocation model. The Calbuco example reflects the convenience of using the CDM for a rapid interpretation of deformation data.

Description: Burkholderia pseudomallei causes melioidosis, a potentially fatal infectious disease in tropical and subtropical countries worldwide. The intracellular behaviour of this pathogen in host cells has been reported to impact the severity of melioidosis, including the development of septicaemia, a consequence of pneumonia melioidosis. We previously identified a predicted cation transporter protein, BPSS1228, that participates in the transitional stage of this intracellular pathogen. For further analysis, in this study B. pseudomallei bpss1228 mutant and complemented strains were constructed and bacterial infectivity on human lung epithelial cells, A549, investigated in vitro . Burkholderia pseudomallei bpss1228 mutant showed impaired bacterial adhesion and invasion into A549 cells compared with wild-type strain, while the deficient phenotypes were restored to wild-type levels by the complemented strain. Additionally, the inactivation of bpss1228 in the mutant strain affected flagella-based swimming on a semi-solid surface and resistance to acid stresses simulating intracellular environments. These observations of BPSS1228 relating to B. pseudomallei infection strategies shed a new light on its association with intracellular B. pseudomallei during the interaction with host cells.

Description: Formation of a transient sub-population of bacteria, referred to as persisters, is one of the most important and least understood mechanisms that bacteria employ to evade elimination. Persister cells appear to be slow-growing bacteria that are broadly protected from a wide range of antibiotics. Using both theoretical and experimental methods, we show that alternating the application and withdrawal of antibiotics can be an effective treatment—as long as the timing of the protocol is estimated with precision. More specifically, we demonstrate that timing the alternating treatment based on theoretical predictions is confirmed using experimental observations. These results support a large class of theoretical studies that show that, even without complete understanding of the biological mechanisms, these models can provide insight into properties of the system.