Publication Date:
2022-05-25
Description:
Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution June 2009
Description:
Iron availability and primary productivity in the oceans are intricately linked through
photosynthesis. At the global scale we understand how iron addition induces phytoplankton
blooms through meso-scale iron-addition experiments. At the atomic scale, we can describe the
length and type of bonds that connect iron atoms to components of photosystem I, the most
efficient light-harvesting complex in nature. Yet, we know little of how iron influences microbial
diversity and distribution in the open ocean. In this study, we assess the influence of iron on the
ecology of the numerically abundant marine cyanobacterium, Prochlorococcus. With its minimal
genome and ubiquity in the global ocean, Prochlorococcus represents a model system in which to
study the dynamics of the link between iron and primary productivity. To this end, we tested the
iron physiology of two closely-related Prochlorococcus ecotypes. MED4 is adapted to high-light
environments while MIT9313 lives best in low-light conditions. We determined that MIT9313 is
capable of surviving at low iron concentrations that completely inhibit MED4. Furthermore,
concentrations of Fe’ that inhibit growth in culture are sufficient to support Prochlorococcus
growth in the field, which raises questions about the species of iron available to Prochlorococcus.
We then examined the molecular basis for the ability of MIT9313 to grow at lower iron
concentrations than MED4 by assessing whole-genome transcription in response to changes in
iron availability in the two ecotypes. Genes that were differentially expressed fell into two
categories: those that are shared by all (Prochlorococcus core genome) and those that are not
(non-core genome). Only three genes shared between MED4 and MIT9313 were iron-responsive
in both strains. We then tested the iron physiology of picocyanobacteria in the field and found
that Synechococcus is iron-stressed in samples where Prochlorococcus is not. Finally, we propose
a method to measure how iron stress in Prochlorococcus changes over natural gradients of iron in
the oligotrophic ocean by quantifying transcription of the iron-stress induced gene, isiB. Taken
together, our studies demonstrate that iron metabolism influences the ecology of Prochlorococcus
both by contributing to its diversity and distinguishing it from other marine cyanobacteria.
Description:
This work was supported by grants from the Gordon and Betty Moore Foundation (#495
and #495.01), the National Science Foundation (OCE-0425602), the Center for Microbial
Oceanography: Research and Education established by the National Science Foundation
(Z792093-02), and the Department of Energy (DE-FG02-07ER64506 and DE-FG02-08ER64516)
to Sallie W. Chisholm. In addition, the work was supported by grants to Mak A. Saito from the
Office of Naval Research (N00014-05-1-0704), National Science Foundation Center for
Microbial Oceanography: Research and Education (Z792384), National Science Foundation
Environmental Genomics Program (0723667), and National Science Foundation Chemical
Oceanography Program (OCE-0752271 and OCE-0452883).
Keywords:
Photosynthesis
;
Iron
;
Metabolism
;
Knorr (Ship : 1970-) Cruise KN182-5
;
Knorr (Ship : 1970-) Cruise KN182-9
Repository Name:
Woods Hole Open Access Server
Type:
Thesis
Format:
application/pdf
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