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  • Eddies  (68)
  • thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAF Ecological science, the Biosphere
  • American Meteorological Society  (60)
  • American Geophysical Union  (8)
  • CRC Press  (4)
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  • 1
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    Taylor & Francis | CRC Press
    Publication Date: 2024-04-05
    Description: Anemonefishes, one of the most popular and recognizable of fishes in the world, are much more than film characters; they are also emerging model organisms for studying the biology, ecology, and evolution of coral reef fishes. They are a group of 28 species often employed to study patterns and processes of social organization, intra- and inter-specific competition, sex change, mutualism, dispersal and connectivity of fish populations, habitat selection, pigment pattern formation, lifespan and predator-prey interactions. This multi-authored book covers all these areas and provides an update on the research done with this model and the perspective it opens for the future. Key Features Contains basic and up-to-date information on an emerging fish model Allows non-specialist readers to grasp the relevance of a wide research area Provides accurate and easy to access information on each of the 28 species Includes guidance for establishing a breeding colony Documents that anemonefishes are useful model organisms for ecological, developmental and climate research The Open Access version of this book, available at www.taylorfrancis.com, has been made available under a Creative Commons Attribution-Non Commercial-No Derivatives 4.0 license.
    Keywords: Anemonefishes;Coral Reefs;Model Organism;Mutualism;Sex Change ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSV Zoology and animal sciences::PSVC Zoology: fishes (ichthyology) ; thema EDItEUR::W Lifestyle, Hobbies and Leisure::WN Nature and the natural world: general interest::WNC Wildlife: general interest::WNCS Wildlife: aquatic creatures: general interest ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSC Developmental biology ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAJ Evolution ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAF Ecological science, the Biosphere ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAK Genetics (non-medical) ; thema EDItEUR::R Earth Sciences, Geography, Environment, Planning::RN The environment::RNC Applied ecology ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSP Hydrobiology::PSPM Marine biology
    Language: English
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  • 2
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    Taylor & Francis | Oceanography and Marine Biology | Oceanography and Marine Biology | CRC Press
    Publication Date: 2024-04-05
    Description: Global declines in biodiversity have become increasingly severe. Traditional monitoring approaches for assessing marine species distributions and abundances are time consuming, costly, and manpower intensive. Fortunately, rapid progress of sequencing technologies from first-generation to high-throughput sequencing have resulted in improvements in experimental techniques. These advances have accelerated rates of species discovery and identification, enabling community-level biomonitoring – the ‘Biomonitoring 2.0’ framework. Simultaneous multispecies identifications in mixed-sample pools are now mainstream with DNA metabarcoding, upscaling monitoring from the individual specimen to the ecosystem scale. In this review, we examine the progress of DNA metabarcoding over the last decade in the characterisation of marine macrobiota to microbial communities. By melding molecular techniques and more traditional taxonomic tools, this integrative Biomonitoring 2.0 approach is tailored to improve the overall effectiveness of biomonitoring. As such, we here assess its accuracy, expertise requirement, general applicability, time, cost-effectiveness, and throughput for biomonitoring. We highlight various methodological challenges that must be considered during implementation, including completeness of reference databases, representativeness of sequencing read counts for quantitative estimates, and supplementation with environmental RNA for discerning live signals from legacy DNA. Finally, we conclude with an outlook of the enhanced Biomonitoring 2.0 framework for mass adoption by ecologists and managers, as well as the prospects of emerging rapid detection technologies for ecosystem surveillance.
    Keywords: Barcoding ; Bioinformatics ; Environmental DNA Metabarcoding ; Environmental RNA ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAF Ecological science, the Biosphere ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAJ Evolution ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
    Language: English
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  • 3
    Publication Date: 2024-04-05
    Description: The Central and South Atlantic represents a vast ocean area and is home to a diverse range of ecosystems and species. Nevertheless, and similar to the rest of the global south, the area is comparatively understudied yet exposed to increasing levels of multisectoral pressures. To counteract this, the level of scientific exploration in the Central and South Atlantic has increased in recent years and will likely continue to do so within the context of the United Nations (UN) Decade of Ocean Science for Sustainable Development. Here, we compile the literature to investigate the distribution of previous scientific exploration of offshore (30 m+) ecosystems in the Central and South Atlantic, both within and beyond national jurisdiction, allowing us to synthesise overall patterns of biodiversity. Furthermore, through the lens of sustainable management, we have reviewed the existing anthropogenic activities and associated management measures relevant to the region. Through this exercise, we have identified key knowledge gaps and undersampled regions that represent priority areas for future research and commented on how these may be best incorporated into, or enhanced through, future management measures such as those in discussion at the UN Biodiversity Beyond National Jurisdiction negotiations. This review represents a comprehensive summary for scientists and managers alike looking to understand the key topographical, biological, and legislative features of the Central and South Atlantic.
    Keywords: Atlantic deep sea ; Benthic ecology ; Marine spatial planning ; Biodiversity patterns ; Gap analysis ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAF Ecological science, the Biosphere ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAJ Evolution ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
    Language: English
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  • 4
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    Taylor & Francis | CRC Press
    Publication Date: 2024-04-05
    Description: This book focuses on the amphibian, Xenopus, one of the most commonly used model animals in the biological sciences. Over the past 50 years, the use of Xenopus has made possible many fundamental contributions to our knowledge in cell biology, developmental biology, molecular biology, and neurobiology. In recent years, with the completion of the genome sequence of the main two species and the application of genome editing techniques, Xenopus has emerged as a powerful system to study fundamental disease mechanisms and test treatment possibilities. Xenopus has proven an essential vertebrate model system for understanding fundamental cell and developmental biological mechanisms, for applying fundamental knowledge to pathological processes, for deciphering the function of human disease genes, and for understanding genome evolution. Key Features Provides historical context of the contributions of the model system Includes contributions from an international team of leading scholars Presents topics spanning cell biology, developmental biology, genomics, and disease model Describes recent experimental advances Incorporates richly illustrated diagrams and color images Related Titles Green, S. L. The Laboratory Xenopus sp. (ISBN 978-1-4200-9109-0) Faber, J. & P. D. Nieuwkoop. Normal Table of Xenopus laevis (Daudin): A Systematical & Chronological Survey of the Development from the Fertilized Egg till the End of Metamorphosis (ISBN 978-0-8153-1896-5) Jarret, R. L. & K. McCluskey. The Biological Resources of Model Organisms (ISBN 978-1-0320-9095-5)
    Keywords: Developmental biology ; Genetics (non-medical) ; Evolution ; Ecological science, the Biosphere ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSC Developmental biology ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAK Genetics (non-medical) ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAJ Evolution ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAF Ecological science, the Biosphere
    Language: English
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  • 5
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    American Meteorological Society
    Publication Date: 2017-04-04
    Description: We study the quasi-geostrophic merging dynamics of axisymmetric baroclinic vortices to understand how baroclinicity affects merging rates and the development of the nonlinear cascade of enstrophy. The initial vortices are taken to simulate closely the horizontal' and vertical structure of Gulf Stream rings. A quasigeostrophic model is set with a horizontal resolution of 9 km and 6 vertical levels to resolve the mean stratification of the Gulf Stream region. The results show that the baroclinic merging is slower than the purely barotropic process, The merging is shown to occur in two phases: the tirst, which produces clove-shaped vortices and diffusive mixing of vorticity contours; and the second, which consists of the sliding of the remaining vorticity cores with a second diffusive mixing of the intemal vorticity field. Comparison among Nof, Cushman-Roisin, Polvani et al, and Dewar and Killworth merging events indicates a substantial agreement in the kinematics of the DYOCRSS. Parameter sensitivity experiments show that the decrease of the baroclinicity parameter of the system, Γ^2, [defined as Γ^2 = (D^2 fo^2)/ (No^2 H^2)], increases the speed of merging while its increase slows down the merging. However, the halting elfect of baroclinicity (large Γ^2 or small Rossby radii of deformation) reaches a saturation level where the merging becomes insensitive to larger F2 values. Furthermore, we show that a regime of small Γ^2 exists at which the merged baroclinic vortex is unstable (metastable) and breaks again into two new vortices, Thus, in the baroelinic case the range of Γ^2 detemines the stability of the merged vortex. We analyze these results by local energy and vorticity balances, showing that the horizontal divergence of pressure work term [∇ *(pv)] and the relative-vorticity advection term (v * ∇ (∇ ^2 φ) trigger the merging during the first phase. Due to this horizontal redistribution process, a net kinetic to gravitational energy conversion occurs via buoyancy work in the region external to the cores of the vortices. The second phase of merging is dominated by a direct baroclinic conversion of available gravitational energy into kinetic energy, which in tum triggers a horizontal energy redistribution producing the final fusion of the vortex centers. This energy and vorticity analysis supports the hypothesis that merging is an internal mixing process triggered by a horizontal redistribution of kinetic energy.
    Description: The work has been financed by a grant from the Progetto Finalizzato "Calcolo Parallelo"
    Description: Published
    Description: 1618/1637
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: restricted
    Keywords: Ocean modeling ; Vortex dynamics ; Baroclinicity ; Eddies ; 03. Hydrosphere::03.01. General::03.01.01. Analytical and numerical modeling
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 6
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2010. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 40 (2010): 789-801, doi:10.1175/2009JPO4039.1.
    Description: The issue of internal wave–mesoscale eddy interactions is revisited. Previous observational work identified the mesoscale eddy field as a possible source of internal wave energy. Characterization of the coupling as a viscous process provides a smaller horizontal transfer coefficient than previously obtained, with vh 50 m2 s−1 in contrast to νh 200–400 m2 s−1, and a vertical transfer coefficient bounded away from zero, with νυ + (f2/N2)Kh 2.5 ± 0.3 × 10−3 m2 s−1 in contrast to νυ + (f2/N2)Kh = 0 ± 2 × 10−2 m2 s−1. Current meter data from the Local Dynamics Experiment of the PolyMode field program indicate mesoscale eddy–internal wave coupling through horizontal interactions (i) is a significant sink of eddy energy and (ii) plays an O(1) role in the energy budget of the internal wave field.
    Keywords: Eddies ; Internal waves ; Mesoscale processes
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2008. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 38 (2008): 2556-2574, doi:10.1175/2008JPO3666.1.
    Description: Vertical profiles of horizontal velocity obtained during the Mid-Ocean Dynamics Experiment (MODE) provided the first published estimates of the high vertical wavenumber structure of horizontal velocity. The data were interpreted as being representative of the background internal wave field, and thus, despite some evidence of excess downward energy propagation associated with coherent near-inertial features that was interpreted in terms of atmospheric generation, these data provided the basis for a revision to the Garrett and Munk spectral model. These data are reinterpreted through the lens of 30 years of research. Rather than representing the background wave field, atmospheric generation, or even near-inertial wave trapping, the coherent high wavenumber features are characteristic of internal wave capture in a mesoscale strain field. Wave capture represents a generalization of critical layer events for flows lacking the spatial symmetry inherent in a parallel shear flow or isolated vortex.
    Description: Salary support for this analysis was provided by Woods Hole Oceanographic Institution bridge support funds.
    Keywords: Eddies ; Ocean dynamics ; Internal waves ; Ocean variability
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 41 (2011): 889–910, doi:10.1175/2010JPO4496.1.
    Description: This paper examines interaction between a barotropic point vortex and a steplike topography with a bay-shaped shelf. The interaction is governed by two mechanisms: propagation of topographic Rossby waves and advection by the forcing vortex. Topographic waves are supported by the potential vorticity (PV) jump across the topography and propagate along the step only in one direction, having higher PV on the right. Near one side boundary of the bay, which is in the wave propagation direction and has a narrow shelf, waves are blocked by the boundary, inducing strong out-of-bay transport in the form of detached crests. The wave–boundary interaction as well as out-of-bay transport is strengthened as the minimum shelf width is decreased. The two control mechanisms are related differently in anticyclone- and cyclone-induced interactions. In anticyclone-induced interactions, the PV front deformations are moved in opposite directions by the point vortex and topographic waves; a topographic cyclone forms out of the balance between the two opposing mechanisms and is advected by the forcing vortex into the deep ocean. In cyclone-induced interactions, the PV front deformations are moved in the same direction by the two mechanisms; a topographic cyclone forms out of the wave–boundary interaction but is confined to the coast. Therefore, anticyclonic vortices are more capable of driving water off the topography. The anticyclone-induced transport is enhanced for smaller vortex–step distance or smaller topography when the vortex advection is relatively strong compared to the wave propagation mechanism.
    Description: Y. Zhang acknowledges the support of theMIT-WHOI Joint Programin Physical Oceanography, NSF OCE-9901654 and OCE-0451086. J. Pedlosky acknowledges the support of NSF OCE- 9901654 and OCE-0451086.
    Keywords: Transport ; Eddies ; Barotropic flow ; Topographic effects ; Vortices ; Currents ; Potential vorticity ; Rossby waves
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 24 (2011): 4844–4858, doi:10.1175/2011JCLI4130.1.
    Description: The factors that determine the heat transport and overturning circulation in marginal seas subject to wind forcing and heat loss to the atmosphere are explored using a combination of a high-resolution ocean circulation model and a simple conceptual model. The study is motivated by the exchange between the subpolar North Atlantic Ocean and the Nordic Seas, a region that is of central importance to the oceanic thermohaline circulation. It is shown that mesoscale eddies formed in the marginal sea play a major role in determining the mean meridional heat transport and meridional overturning circulation across the sill. The balance between the oceanic eddy heat flux and atmospheric cooling, as characterized by a nondimensional number, is shown to be the primary factor in determining the properties of the exchange. Results from a series of eddy-resolving primitive equation model calculations for the meridional heat transport, overturning circulation, density of convective waters, and density of exported waters compare well with predictions from the conceptual model over a wide range of parameter space. Scaling and model results indicate that wind effects are small and the mean exchange is primarily buoyancy forced. These results imply that one must accurately resolve or parameterize eddy fluxes in order to properly represent the mean exchange between the North Atlantic and the Nordic Seas, and thus between the Nordic Seas and the atmosphere, in climate models.
    Description: This study was supported by the National Science Foundation under Grants OCE-0726339 and OCE-0850416.
    Keywords: Eddies ; Forcing ; Meridional overturning circulation ; Transport ; North Atlantic Ocean ; Seas/gulfs/bays
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2013. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 43 (2013): 283–300, doi:10.1175/JPO-D-11-0240.1.
    Description: Motivated by the recent interest in ocean energetics, the widespread use of horizontal eddy viscosity in models, and the promise of high horizontal resolution data from the planned wide-swath satellite altimeter, this paper explores the impacts of horizontal eddy viscosity and horizontal grid resolution on geostrophic turbulence, with a particular focus on spectral kinetic energy fluxes Π(K) computed in the isotropic wavenumber (K) domain. The paper utilizes idealized two-layer quasigeostrophic (QG) models, realistic high-resolution ocean general circulation models, and present-generation gridded satellite altimeter data. Adding horizontal eddy viscosity to the QG model results in a forward cascade at smaller scales, in apparent agreement with results from present-generation altimetry. Eddy viscosity is taken to roughly represent coupling of mesoscale eddies to internal waves or to submesoscale eddies. Filtering the output of either the QG or realistic models before computing Π(K) also greatly increases the forward cascade. Such filtering mimics the smoothing inherent in the construction of present-generation gridded altimeter data. It is therefore difficult to say whether the forward cascades seen in present-generation altimeter data are due to real physics (represented here by eddy viscosity) or to insufficient horizontal resolution. The inverse cascade at larger scales remains in the models even after filtering, suggesting that its existence in the models and in altimeter data is robust. However, the magnitude of the inverse cascade is affected by filtering, suggesting that the wide-swath altimeter will allow a more accurate determination of the inverse cascade at larger scales as well as providing important constraints on smaller-scale dynamics.
    Description: BKA received support from Office of Naval Research Grant N00014-11-1-0487, National Science Foundation (NSF) Grants OCE-0924481 and OCE- 09607820, and University of Michigan startup funds. KLP acknowledges support from Woods Hole Oceanographic Institution bridge support funds. RBS acknowledges support from NSF grants OCE-0960834 and OCE-0851457, a contract with the National Oceanography Centre, Southampton, and a NASA subcontract to Boston University. JFS and JGR were supported by the projects ‘‘Global and remote littoral forcing in global ocean models’’ and ‘‘Agesotrophic vorticity dynamics of the ocean,’’ respectively, both sponsored by the Office of Naval Research under program element 601153N.
    Description: 2013-08-01
    Keywords: Eddies ; Nonlinear dynamics ; Ocean dynamics ; Satellite observations ; Ocean models
    Repository Name: Woods Hole Open Access Server
    Type: Article
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