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  • Genetics
  • Submarine groundwater discharge
  • Frontiers Media  (6)
  • WorldFish  (4)
  • Akure (Nigeria)  (2)
  • American Chemical Society
  • American Institute of Physics (AIP)
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  • 1
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    WorldFish | Bhubaneswar, India
    In:  http://aquaticcommons.org/id/eprint/12749 | 115 | 2013-12-03 13:46:30 | 12749 | WorldFish Center
    Publication Date: 2021-07-05
    Description: Macrobrachiurn rosenbergii is one of the widely cultured freshwater prawn species globally. India was the third largest producer of this species in 2007 and its aquaculture production rose to 43,000 metric tons (t) in 2005 froin less than 500 t in 1995. However, since then production has been declining and in 2008-09 it was 12,856 t, a reduction of more than 70% compared to 2005. There are several contributing factors to this decline, such as slow growth rate, poor survival, disease outbreaks, increase in cost of production, and availability of low risk alternative fish species. However, there is a consensus that poor seed quality leading to unsatisfactory growth and survival rates in ponds is one of the major reasons. Hence, the development of a systematic selective breeding program aimed at improving growth rate and ensuring high survival rate of this species was deemed a high priority. The Central Institute of Freshwater Aquaculture (CIFA), Bhubaneswar, India in collaboration with the WorldFish Center, Malaysia initiated a selective breeding program for this species in 2007.
    Description: CIFA - WorldFish Project on Genetic Improvement of Freshwater Prawn, Macrobrachium rosenbergii (de Man) in India (Phase Two)
    Keywords: Aquaculture ; Prawn culture ; Genetics ; Seed production ; Selective breeding ; Freshwater aquaculture ; India •Livestock and Fish
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 10
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  • 2
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    WorldFish | Penang, Malaysia
    In:  http://aquaticcommons.org/id/eprint/10991 | 115 | 2013-03-17 12:38:07 | 10991 | WorldFish Center
    Publication Date: 2021-06-25
    Description: When different strains or breeds of a particular species are available, the best choice is seldom immediately obvious for producers. Scientists are also interested in the relative performance of different strains because it provides a basis for recommendations to producers and it often stimulates the conduct of work aimed at unraveling the underlying biological mechanisms involved in the expression of such differences. Hence, strain or breed comparisons of some sort are frequently conducted. This manual is designed to provide general guidelines for the design of strain comparison trials in aquaculture species. Example analyzes are provided using SAS and SPSS. The manual is intended to serve a wide range of readers from developing countries with limited access to information. The users, however, are expected to have a basic knowledge of quantitative genetics and experience in statistical methods and data analysis as well as familiarity with computer software. The manual mainly focuses on the practical aspects of design and data analysis, and interpretation of results.
    Description: CGIAR Research Program Livestock & Fish
    Keywords: Aquaculture ; Aquaculture ; Genetics ; Selective breeding
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 31
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  • 3
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    WorldFish | Penang, Malaysia
    In:  http://aquaticcommons.org/id/eprint/10632 | 115 | 2013-07-12 04:44:53 | 10632 | WorldFish Center
    Publication Date: 2021-06-27
    Description: Aquaculture production systems in developing countries are largely based on the use of unimproved species and strains. As knowledge and experience are accumulated in relation to the management, feeding and animal health issues of such production systems, the availability of genetically more productive stock becomes imperative in order to more effectively use resources. For instance, there is little point in providing ideal water conditions and optimum feed quality to fish that do not have the potential to grow faster and to be harvested on time, providing a product of the desired quality. Refinements in the production system and improvement of the stock used must progress hand in hand. In this paper we deal separately with genetic and non-genetic issues pertaining to the multiplication and dissemination of improved strains. The separation is somewhat arbitrary, and as will be evident from our discussion, there is frequent interaction between the two.
    Description: CGIAR Research Program on Livestock and Fish
    Keywords: Aquaculture ; Aquaculture ; Genetics ; Selective breeding
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 15
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  • 4
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    WorldFish | Penang, Malaysia
    In:  http://aquaticcommons.org/id/eprint/16659 | 115 | 2015-04-13 11:44:30 | 16659 | WorldFish Center
    Publication Date: 2021-07-07
    Description: This publication is based on materials covered and outputs generated during the Workshop on Risk Assessment Methodologies and Tools for Aquaculture in Sub-Saharan Africa, which was jointly held by WorldFish and FAO in Siavonga, Zambia on 28 June - 2 July 2010. The workshop was delivered as a training exercise to 17 participants from seven sub-Saharan countries and was designed to highlight current methodologies and tools available for environmental risk analysis in aquaculture development. A key focus of the workshop was to encourage participants to consider hypothetical but realistic scenarios and to discuss issues relevant to evaluating the environmental risks of a given activity or scenario. This publication presents selected scenarios from the workshop and the outcomes of the deliberative process as developed by the participants. This publication is factual but not comprehensive, therefore any statements or estimations of risk do not represent the actual risks arising from the described scenario. It is intended to serve as an easily readable introduction to risk analysis, highlighting worked examples that will provide guidance on how a risk analysis may be approached in a similar situation.
    Description: Food and Agriculture Organization of the United Nations
    Description: CGIAR Research Program on Livestock and Fish
    Keywords: Agriculture ; Aquaculture ; Genetics ; GIFT ; Livestock and fish ; Training ; Tilapia
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 55
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  • 5
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 158, doi:10.3389/fmars.2018.00158.
    Description: In autumn 2015, several sources reported observations of large amounts of gelatinous material in a large north Norwegian fjord system, either caught when trawling for other organisms or fouling fishing gear. The responsible organism was identified as a physonect siphonophore, Nanomia cara, while a ctenophore, Beroe cucumis, and a hydromedusa, Modeeria rotunda, were also registered in high abundances on a couple of occasions. To document the phenomena, we have compiled a variety of data from concurrent fisheries surveys and local fishermen, including physical samples, trawl catch, and acoustic data, photo and video evidence, and environmental data. Because of the gas-filled pneumatophore, characteristic for these types of siphonophores, acoustics provided detailed and unique insight to the horizontal and vertical distribution and potential abundances (~0.2–20 colonies·m−3) of N. cara with the highest concentrations observed in the near bottom region at ~320 m depth in the study area. This suggests that these animals were retained and accumulated in the deep basins of the fjord system possibly blooming here because of favorable environmental conditions and potentially higher prey availability compared to the shallower shelf areas to the north. Few cues as to the origin and onset of the bloom were found, but it may have originated from locally resident siphonophores. The characteristics of the deep-water masses in the fjord basins were different compared to the deep water outside the fjord system, suggesting no recent deep-water import to the fjords. However, water-masses containing siphonophores (not necessarily very abundant), may have been additionally introduced to the fjords at intermediate depths, with the animals subsequently trapped in the deeper fjord basins. The simultaneous observations of abundant siphonophores, hydromedusae, and ctenophores in the Lyngen-Kvænangen fjord system are intriguing, but difficult to provide a unified explanation for, as the organisms differ in their biology and ecology. Nanomia and Beroe spp. are holopelagic, while M. rotunda has a benthic hydroid stage. The species also have different trophic ecologies and dietary preferences. Only by combining information from acoustics, trawling, genetics, and local fishermen, were the identity, abundance, and the vertical and horizontal distribution of the physonect siphonophore, N. cara, established.
    Description: The work was funded by the Ministry of Fisheries and Coastal Affairs through the Institute of Marine Research (IMR), while the Research Council of Norway (RCN) is thanked for the financial support through the project The Arctic Ocean Ecosystem—(SI_ARCTIC, RCN 228896). AH was supported by the Norwegian Taxonony Initiative (NTI 70184233) and ForBio Research School funding (RCN 248799 and NTI 70184215).
    Keywords: Jellyfish bloom ; Genetics ; Acoustics ; Nanomia ; North Norwegian fjords ; Gelatinous zooplankton
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
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    FISON | Akure (Nigeria)
    In:  http://aquaticcommons.org/id/eprint/23373 | 19325 | 2018-04-10 16:09:38 | 23373 | Fisheries Society of Nigeria
    Publication Date: 2021-07-14
    Description: The contribution of tilapia aquaculture in Nigeria to world output is negligible due to stunting, poor market value among others. This paper evaluates the aquacultural credentials of tilapia, some genetic improvement technology in cultured tilapia, namely, ploidy, hormonal sex reversal. transgenic, hybridization, and the necessity of Genetic Improvement in accelerating tilapia production in Nigeria. Investigation reveals the presence of O. niloticus with the highest growth perfermancc index (~h1=3.11) for Lake Kanji which indicates high growth potential in suitable culture environment and could serve as a good starting point for genetic development. The presence of ”wesafu”, an ecotype cichlid, endemic to Epe lagoon, Lagos, which grows to 1500g in the wild, appears to be an excellent candidate for genetic improvement of a commercial strain for the growing aquaculture industry. Tilapia Genetic improvement in Nigeria is faced with a number of setbacks. This includes short- term, scattered and disjointed funding, inadequate genetic research facilities, ecological risk, inadequate skilled manpower and poor documentation of tilapia genetic resources among others. Considering the growing importance of tilapia culture, the need to document, conserve, evaluate and utilize tilapia genetic resources is highlighted to enhance the success of food security in Nigeria.
    Description: Includes:- 3 tables.;26 refs.
    Keywords: Aquaculture ; Oreochromis niloticus ; Nigeria ; Kainji L. ; freshwater environment ; Fish culture ; Genetics ; Selective breeding
    Repository Name: AquaDocs
    Type: conference_item , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 23-28
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  • 7
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    FISON | Akure (Nigeria)
    In:  http://aquaticcommons.org/id/eprint/23409 | 19325 | 2018-04-12 09:02:51 | 23409 | Fisheries Society of Nigeria
    Publication Date: 2021-07-14
    Description: A comparative analysis on biochemistry and Polyacryl Amide Gel Electrophresis was carried out to determine the genetic diversity of diploid and triploid Heterobranchus bidorsalis. Sixteen samples of diploid and triploid farm-raised (mean weight; 512.6g and mean length; 41.6cm) were collected and the electrophoresis analysis was conducted using 5.5% Polyacryl Amide Gel and serum protein obtained from the blood of the live samples. 0.06% Coomassie blue was used for staining the gel while a mixture of ratio 1:2 of glacial acetic acid, meethanol and distilled water was used for de-staining the gel. The diploid and triploid possessed an equal total number of 23 electrophoretic protein bands. The molecular phylogenetics of both samples revealed low genetic variability. Results of this study will serve as a baseline analysis on the current genetic diversity of H. bidorsalis in Nigeria.
    Description: Includes:- 2 figs.;8 refs.
    Keywords: Fisheries ; Heterobranchus bidorsalis ; Nigeria ; Kontagora L. ; freshwater environment ; Genetics ; Diploids ; Experimental culture ; Nutritional requirements ; Fish
    Repository Name: AquaDocs
    Type: conference_item , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 168-169
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  • 8
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Oehler, T., Tamborski, J., Rahman, S., Moosdorf, N., Ahrens, J., Mori, C., Neuholz, R., Schnetger, B., & Beck, M. DSi as a tracer for submarine groundwater discharge. Frontiers in Marine Science, 6, (2019): 563, doi:10.3389/fmars.2019.00563.
    Description: Submarine groundwater discharge (SGD) is an important source of nutrients and metals to the coastal ocean, affects coastal ecosystems, and is gaining recognition as a relevant water resource. SGD is usually quantified using geochemical tracers such as radon or radium. However, a few studies have also used dissolved silicon (DSi) as a tracer for SGD, as DSi is usually enriched in groundwater when compared to surface waters. In this study, we discuss the potential of DSi as a tracer in SGD studies based on a literature review and two case studies from contrasting environments. In the first case study, DSi is used to calculate SGD fluxes in a tropical volcanic-carbonate karstic region (southern Java, Indonesia), where SGD is dominated by terrestrial groundwater discharge. The second case study discusses DSi as a tracer for marine SGD (i.e., recirculated seawater) in the tidal flat area of Spiekeroog (southern North Sea), where SGD is dominantly driven by tidal pumping through beach sands. Our results indicate that DSi is a useful tracer for SGD in various lithologies (e.g., karstic, volcanic, complex) to quantify terrestrial and marine SGD fluxes. DSi can also be used to trace groundwater transport processes in the sediment and the coastal aquifer. Care has to be taken that all sources and sinks of DSi are known and can be quantified or neglected. One major limitation is that DSi is used by siliceous phytoplankton and therefore limits its applicability to times of the year when primary production of siliceous phytoplankton is low. In general, DSi is a powerful tracer for SGD in many environments. We recommend that DSi should be used to complement other conventionally used tracers, such as radon or radium, to help account for their own shortcomings.
    Description: TO, NM, and the presented case study 1 were funded through the BMBF junior research group SGD-NUT (grant #01LN1307A). Open access publication fees are paid by Leibniz-Centre for Tropical Marine Research internal funds. The presented case study 2 was financially supported by the DFG Research Group “BioGeoChemsitry of Tidal Flats”, the Ph.D. Research Training Group “The ecology of molecules” funded by the Ministry for Science and Culture of Lower Saxony, and the Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg.
    Keywords: Submarine groundwater discharge ; DSi ; Silica ; Tracer ; Radon ; Radium
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 9
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gosselin, K. M., Nelson, R. K., Spivak, A. C., Sylva, S. P., Van Mooy, B. A. S., Aeppli, C., Sharpless, C. M., O’Neil, G. W., Arrington, E. C., Reddy, C. M., & Valentine, D. L. Production of two highly abundant 2-methyl-branched fatty acids by blooms of the globally significant marine cyanobacteria Trichodesmium erythraeum. ACS Omega, 6(35), (2021): 22803–22810, https://doi.org/10.1021/acsomega.1c03196.
    Description: The bloom-forming cyanobacteria Trichodesmium contribute up to 30% to the total fixed nitrogen in the global oceans and thereby drive substantial productivity. On an expedition in the Gulf of Mexico, we observed and sampled surface slicks, some of which included dense blooms of Trichodesmium erythraeum. These bloom samples contained abundant and atypical free fatty acids, identified here as 2-methyldecanoic acid and 2-methyldodecanoic acid. The high abundance and unusual branching pattern of these compounds suggest that they may play a specific role in this globally important organism.
    Description: This work was funded with grants from the National Science Foundation grants OCE-1333148, OCE-1333162, and OCE-1756254 and the Woods Hole Oceanographic Institution (IR&D). GCxGC analysis made possible by WHOI’s Investment in Science Fund.
    Keywords: Lipids ; Alkyls ; Bacteria ; Genetics ; Chromatography
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 10
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bejannin, S., Tamborski, J. J., van Beek, P., Souhaut, M., Stieglitz, T., Radakovitch, O., Claude, C., Conan, P., Pujo-Pay, M., Crispi, O., Le Roy, E., & Estournel, C. Nutrient fluxes associated with submarine groundwater discharge from karstic coastal aquifers (Côte Bleue, French Mediterranean coastline). Frontiers in Environmental Science, 7, (2020): 205, doi: 10.3389/fenvs.2019.00205.
    Description: Determination of submarine groundwater discharge (SGD) from karstic coastal aquifers is important to constrain hydrological and biogeochemical cycles. However, SGD quantification using commonly employed geochemical methods can be difficult to constrain under the presence of large riverine inputs, and is further complicated by the determination of the karstic groundwater endmember. Here, we investigated a coastal region where groundwater discharges from a karstic aquifer system using airborne thermal infrared mapping and geochemical sampling conducted along offshore transects. We report radium data (223Ra, 224Ra, 228Ra) that we used to derive fluxes (water, nutrients) associated with terrestrial groundwater discharge and/or seawater circulation through the nearshore permeable sediments and coastal aquifer. Field work was conducted at different periods of the year to study the temporal variability of the chemical fluxes. Offshore transects of 223Ra and 224Ra were used to derive horizontal eddy diffusivity coefficients that were subsequently combined with surface water nutrient gradients (NO2− + NO3−, DSi) to determine the net nutrient fluxes from SGD. The estimated DSi and (NO2− + NO3−) fluxes are 6.2 ± 5.0 *103 and 4.0 ± 2.0 *103 mol d−1 per km of coastline, respectively. We attempted to further constrain these SGD fluxes by combining horizontal eddy diffusivity and 228Ra gradients. However, SGD endmember selection in this area (terrestrial groundwater discharge vs. porewater) adds further uncertainty to the flux calculation and thus prevented us from calculating a reliable flux using this latter method. Additionally, the relatively long half-life of 228Ra (5.75 y) makes it sensitive to specific circulation patterns in this coastal region, including sporadic intrusions of Rhône river waters that impact both the 228Ra and nutrient surface water distributions. We show that SGD nutrient fluxes locally reach up to 20 times the nutrient fluxes from a small river (Huveaune River). On a regional scale, DSi fluxes driven by SGD vary between 0.1 and 1.4% of the DSi inputs of the Rhône River, while the (NO2− + NO3−) fluxes driven by SGD on this 22 km long coastline are between 0.1 and 0.3% of the Rhône River inputs, the largest river that discharges into the Mediterranean Sea. Interestingly, the nutrient fluxes reported here are similar in magnitude compared with the fluxes quantified along the sandy beach of La Franqui, in the western Gulf of Lions (Tamborski et al., 2018), despite the different lithology of the two areas (karst systems vs. unconsolidated sediment).
    Description: The Ph.D. thesis fellowship of SB and the postdoctoral fellowship of JT were supported by FEDER funded by Europe and Région Occitanie Pyrénées-Méditerranée (SELECT project). This project was funded by (i) ANR-MED-SGD (ANR-15-CE01-0004; PB) and (ii) CNES for funding the airborne TIR images acquired in 2012 as part of the Geomether project (PI: Pascal Allemand, PB being responsible for the acquisition of TIR images in that project).
    Keywords: Submarine groundwater discharge ; Mediterranean sea ; Radium isotopes ; Thermal infrared remote sensing ; Nutrient fluxes ; GEOTRACES
    Repository Name: Woods Hole Open Access Server
    Type: Article
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