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  • 101
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    New York, N.Y. : Wiley-Blackwell
    Journal of Supramolecular Structure 2 (1974), S. 751-768 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Phytochrome (P), a chromoprotein of 120,000 MW, occurs at low concentrations in all higher plants. The chromophore is an open tetrapyrrole. The pigment exists in two light-absorbing forms: Pr, which absorbs at 660 nm, and Pfr, which absorbs at 730 nm. These forms are interconvertible by light. Pr, the physiologically inactive form, exists in dark-grown plants; Pfr, the active form, appears after irradiation with red light, P-mediated responses, of which about 80 are known, range from short-time effects (sec) such as bioelectric potentials, to long-time effects (hr) such as increases in enzymatic activity. Measurements of phototransformation in vivo with polarized light suggest that P is localized in the plasma membrane. Particulate cell fractions contain about 70% of total extractable P if Pfr is present and only 4% if Pr is present. Evidence indicates that the fraction containing Pfr may be the plasma membrane. One can isolate a partially solubilized membrane system, which can be reversibly reconstituted by adding Mg. The reformed vesicles bind Pfr in vitro. Pfr binding increases with decreasing pH and decreases with increasing monovalent cation concentration. Pfr is released from the membrane by far red light (Pr is formed) and by Triton X-100. We suggest that Pfr binding to a membrane induces conformational changes; the functional properties of this membrane are altered, which might lead to the observed phytochrome-mediated responses.
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  • 102
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    New York, N.Y. : Wiley-Blackwell
    Journal of Supramolecular Structure 2 (1974), S. 617-628 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The physical state of the membrane lipids, as determined by fatty acid composition and environmental temperature, has a marked effect both on the temperature range within which A. laidlawii can grow and on the temperature coefficient of growth within the permissible temperature range. The minimum growth temperature under certain conditions is clearly defined by the lower boundary of the gel-to-liquid-crystalline phase transition of the membrane lipids. The physical state of the membrane lipids can also influence the optimum and maximum growth temperatures. An a brupt increase in the temperature coefficient of growth is noted at temperatures between the phase transition boundaries. Both the absolute rates and the temperature coefficients of cell growth are similar for cells whose membrane lipids exist entirely or predominantly in the liquid-crystalline state, but absolute growth rates decline rapidly and temperature coefficients increase when most of the membrane lipids become solidified. Some cell growth, however, can continue at temperatures at which less than 10% of the total lipid remains in the fluid state. Conversion of the membrane lipid from the liquid-crystalline to the gel state is accompanied by a progressive aggregation of intramembranous protein particles. An appreciable heterogeneity in the physical state of the membrane lipids can apparently be tolerated by this organism without a detectable loss of membrane function.
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  • 103
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    New York, N.Y. : Wiley-Blackwell
    Journal of Supramolecular Structure 2 (1974), S. 629-645 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Concanavalin A (Con A) binding and Con A-mediated hemadsorption to LM cells were found to decrease significantly at both 5-7°C and 15-19°C. The higher of these critical temperatures responds to a change in state of the membrane lipids and can be increased or decreased in cells where the membrane phospholipids contain less or more double bonds, respectively. The lower critical temperature for Con A binding or Con A-mediated hemadsorption does not respond to these changes in membrane lipid composition. Though the amount of Con A bound to the cell surface is a determinant of Con A-mediated agglutinability, the major components of the decreases in Con A-mediated hemadsorption which occur at both these critical temperatures do not have their origin in the decreases in Con A binding which occur over these same temperature ranges - that is 5-7°C and 15-19°C.Con A-mediated hemadsorption measured at 22°C was dramatically inhibited when LM cells were first incubated at 7°C or less. Reversal of this inhibition required 20-30 min of subsequent incubation at 22°C, indicating that factors other than membrane lipid “fluidity” are determinants of agglutinability. LM cells treated with the microtubule-disrupting alkaloids colchicine, colcemid, or vinblastine at concentrations as low as 10-6 M were as much as fourfold more agglutinable with Con A. By contrast, lumicolchicine, an inactive derivative of colchicine, had a slight inhibitory effect on Con A-mediated hemadsorption. Colchicine, vinblastine, or lumicolchicine treatment of LM cells did not alter the quantitative binding of labeled lectin. The results suggest that membrane lipid “fluidity” and the cell cytoskeleton (microtubule/microfilament system) are important determinants of lectin interactions with cell surfaces. The results are interpreted in terms of a model of cell-cell and cell-lectin interactions which assigns a central role to the Con A receptor.
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  • 104
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    New York, N.Y. : Wiley-Blackwell
    Journal of Supramolecular Structure 2 (1974), S. 695-714 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
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  • 105
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    Journal of Supramolecular Structure 2 (1974), S. 682-694 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Physical studies on the formation and structure of mixed micelles of the nonionic surfactant Triton X-100 and phospholipids and enzymatic studies on the action of phospholipase A2 toward these mixed micelles are presented. Results of nmr intensity, line width, and T1 determinations, as well as gel chromatography and centrifugation experiments on the interaction of Triton X-100 with egg and dipalmitoyl phosphatidylcholine, are presented and discussed. The structure of mixed micelles is discussed in terms of a working schematic model which is consistent with the experimental results. Kinetic studies on phospholipase A2 (Naja naja) action are then analyzed in terms of this model. The temperature dependence of phospholipase A2 action toward dipalmitoyl phosphatidylcholine is considered in terms of the effect of thermotropic phase transitions on mixed micelle formation. The phospholipase A2-dipalmitoyl phosphatidylcholine-Triton X-100 system is then considered as an artificial model system for studying the effect of lipid phase separations on biological activity.
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  • 106
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    Journal of Supramolecular Structure 2 (1974), S. 715-727 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The nitrate reductase of E. coli is an inducible membrane protein with a molecular weight of about 800,000. The enzyme consists of four subunits of 60,000 molecular weight, four subunits of 142,000 molecular weight, four molecules of molybdenum, and nonheme iron. The enzyme may be solubilized by heat extraction, which results from limited digestion by a membrane-bound protease, or by Triton X-1 00. When the enzyme is isolated from Triton-solubilized cytoplasmic membrane by immune precipitation, it contains a third protein of 20,000 molecular weight which may be a cytochrome.Chlorate resistant (chl) mutants of E. coli lack functional nitrate reductase. Mutants of the classes (chl)and chlB have all of the enzyme polypeptides present in the membrane JI intact form, while in classes chlC and chlE the membrane contains degraded fragments of the polypeptides, suggesting proteolysis of a defective enzyme. Reconstitution of nitrate reductase activity occurs when soluble extracts of various classes of mutants are mixed and incubated at 32°C. This reconstitution requires three things: (a) intact enzyme polypeptides in the form of small soluble lipoprotein fragments resulting from fragmentation of the cytoplasmic membrane during cell breakage; (b) a molybdenum factor which is present in the wild-type membrane and which accumulates in the cytoplasm of chlB mutants in soluble form; and (c) a soluble factor or enzyme, presumably the chlB gene product, which adds the molybdenum factor to the enzymeTwo conclusions may be drawn from these observations. First, the enzyme is bound t o the membrane by small, hydrophobic regions on one or more of the subunits. Second, the process of reconstitution from mutant extracts is different from the process involved in de novo synthesis of the enzyme in wild-type E. coli.
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  • 107
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    Journal of Supramolecular Structure 2 (1974), S. 769-774 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Halobacterium halobium carries out photophosphorylation. A rhodopsin-like protein, bacteriorhodopsin, located in the cell membrane mediates the first step in energy transduction, the conversion of light energy into a chemiosmotic gradient. After absorption of a photon, bacteriorhodopsin undergoes a series of fast reactions, returning to its original state in a few milliseconds. In continuous light it cycles continuously at 100 to 200 cps. During a cycle protons are taken up on the cytoplasmic side of the membrane and released on the outer surface, thus generating a chemiosmotic gradient which can drive phosphorylation of ADP to ATP.
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  • 108
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    Journal of Supramolecular Structure 2 (1974), S. 775-780 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Living organisms use light as a source of energy and as a source of information. They have developed highly specialized photoenergy and photosignal transducing devices which serve these functions. Membranes are essential parts of both photosignal and photoenergy transducing systems.In photoenergy transduction a substantial part of the absorbed energy is conserved for times very long compared to the lifetime of excited states and converted finally to chemical free energy of ATP and other forms in which it can be stored for further use by the organism. In photosignal transduction light typically triggers an event which dissipates much more energy than is absorbed in the form of light. The additional energy had been stored previously by the organism through some energy transducing systems.
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  • 109
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    Journal of Supramolecular Structure 2 (1974), S. 108-120 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
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  • 110
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    Journal of Supramolecular Structure 2 (1974), S. 163-165 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 111
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    Journal of Supramolecular Structure 2 (1974), S. 189-195 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
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  • 112
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: In part I of this paper (1) we give evidence that the P23-capsoid of τ-particles is transformed in situ into the P23*-capsid of normal phage. Using the polymorphism of phage T4, we have chosen polyheads as representative of P23 assemblies and giant phages as representative of P23* assemblies in order to study their surface crystals by optical filtration of micrographs. We found for polyheads a lattice constant of 112 Å with the typical hexameric, ringlike capsomer and for the giants a lattice constant of 124 Å with quite a different capsomer morphology, of the type (6+1). From the stoichiometry of the proteins composing the normal capsid we conclude that the protomer is a single P23* molecule and that the minor capsid-proteins must be in singular positions on the surface lattice or on the polyhedral head (center of capsomers, vertices, or basal part).We extrapolate the findings on the giant head to the normal head and give a geometric model which is consistent with 1,100 molecules of P23* per capsid.We discuss the part of form inheritance contributed by P23 and the other formgiving gene products and give evidence that morphologic characters are the result of pairs of a reaction chain of interacting gene products. The example we give is the giant head produced by a ts mutant in gene 24 at 36°C.
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  • 113
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    Journal of Supramolecular Structure 2 (1974), S. 7-16 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: As the size of rod membrane fragments was reduced by sonication or by addition of the detergent Emulphogene, the intensity of the circular dichroism (CD) bands (210 and 221 nm) increased progressively with a blue shift in position. The intensity of the visible CD bands (340 and 495 nm) was also increased by sonication. Since the intensity increase of the CD bands was related to a reduction in turbidity, the anomalous CD features of intact membranes could be attributed to optical artifacts caused by the particulate nature of the material.Because the magnitude of the CD bands at 221 nm and 340 nm was essentially identical for the sonic suspension and detergent-clarified solution, the adequacy of sonic suspensions can be assured by checking whether detergent affects the intensity of these bands.Suspensions of sonicated rod membranes, purified on Agarose, contained vesicles of 112 nm in average diameter. The morphology and size of the vesicles did not change upon photobleaching of rhodopsin. The vesicles retained such rod membrane properties as conformational insensitivity to photobleaching of the retinal chromophore, thermal stability, and pigment regenerability. Thus, the physiological integrity of rod membranes was maintained by the sonicated vesicles.From the most reliable estimate of the molecular ellipticity at 221 nm, the helical content of membrane-bound rhodopsin was determined to be approximately 47%.
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  • 114
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    Journal of Supramolecular Structure 2 (1974), S. 728-736 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Tritium-labeled cytochalasin B binds rapidly and reversibly to mammalian cells, and a class of high-affinity sites (Kn ≅ 10-7 M) and a class of low-affinity sites (KD ≥ 10-5 M) are detected. In red blood cells, the high-affinity binding sites (about 3 × 105 per cell) are associated with the plasma membrane, and at least 80% of these appear to be intimately related to the glucose transport system. Fractionation of cellular components of platelets by differential centrifugation and gel filtration chromatography reveals that the high-affinity binding sites in these cells are also associated with membranous materials. A substantial number of the low-affinity binding sites can be traced to platelet actin. The binding of cytochalasin B to actin is consistent with the alteration of intrinsic viscosity and morphology of actin filaments in vitro by the compound at concentrations of around 10-5-10-4 M. The interaction of cytochalasin B with actin may account for its inhibitory effect on various forms of cell motility.
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  • 115
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    Journal of Supramolecular Structure 2 (1974), S. 329-336 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
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  • 116
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The most recent developments in studies on the maturation of the head of bacteriophage T4 are described and discussed.The major features of the maturation steps of the head are the following: (a) The viral DNA is pulled into an empty head in a series of events. (b) Cleavage of two core proteins, P22 (MW = 31,000), to small fragments and the internal protein IPIII (MW = 23,000) to IPIII* (MW = 21,000) appears to be intimately linked to the DNA packaging event, whereas the cleavage of the major head protein of the viral coat, P23 (MW = 55,000), to P23* (MW = 45,000) precedes the DNA packaging event.The P22 core proteins appear to be the precursors of the well-known, highly acidic internal peptides. We have tested the idea that these internal peptides collapse DNA by a repulsive interaction as various polymers like polyethylene oxide (PeO) and polyacrylate(PAA) do. We found that high concentrations of the internal peptides, polyaspartic acid, and polyglutamic acid, collapse DNA. This supports the idea that repulsive interactions with the internal peptides may collapse the DNA inside the head, and thus pull the DNA in.The structure of the DNA collapsed by PeO was studied with the electron microscope and contrasted with the structure of DNA collapsed by polylysine. We find PeO collapses T4 DNA into compact particles best described as a ball of string, of about the size of the T4 head. Two structures are seen in preparations of polylysine-collapsed DNA. One has the shape of a donut and the DNA strand appears to be radially distributed as a spiral; the other is a stemlike structure in which the DNA is folded back and forth in a pleated structure.The aberrant tubular polyhead contains the precursor protein P23, P22, and the internal proteins IPIII and IPII. Addition of chloroform to a polyhead preparation extracts the proteins P22, IPIII, and IPII. This removes the inside material (core) seen in polyheads prior to the chloroform extraction, as judged by electron microscopy. We conclude that P22, IPIII, and IPII (and supposedly IPI) are the major structural constituents of the core of polyheads, while P23 is the major constituent of the outer coat.Structural studies reveal that the core of the polyhead is highly organized into a helical structure consisting of 4-6 helical chains wound about a hollow center of approximately 150 a diameter.Cleavage of the various head proteins occurs when partially purified polyheads are incubated at 37°C. In a 100 minute incubation, about 60-70% of P23 (MW = 55,000) is converted to P23* (MW = 45,000) and a significant conversion of IPIII (MW = 23,000) to IPIII* (MW = 21,000) is seen. The protein P22 (MW = 31,000) disappears during this incubation and is supposedly cleaved to small fragments. The in vitro products, P23* and IPIII*, have the same molecular weight as the in vivo products, suggesting that the protease cleavage is specific. However, several other protein fragments are generated during the in vitro cleavage reaction which have not been observed in vivo. Appropriate mutant studies reveal that the products of genes 21 and 22 are required for these in vitro cleavage reactions.
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  • 117
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    Journal of Supramolecular Structure 2 (1974), S. 1-6 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Previous work has suggested the presence of galactosyltransferases on the outer surface of the plasma membrane of a malignant and a nonmalignant cell line. This paper summarizes data indicating that three other classes of glycosyltransfeases are similarly located on cell surfaces. In addition to the original two cell lines examined, BALB/c 3T3 and BALB/c 3T12, two other lines of BALB/c origin have been investigated. These are the SV40-transformed 3T3 line and one of the revertants of the virally infected cells that is no longer malignant but retains a viral genome.
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  • 118
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    Journal of Supramolecular Structure 2 (1974), S. 302-317 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
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  • 119
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    Journal of Supramolecular Structure 2 (1974), S. 318-328 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: When phage DNA is added to an extract of an induced lambda lysogen, complete phage particles are made that contain the added DNA. The DNA substrate for packaging is a covalently joined polymer of several phage units. Unjoined units must first be joined by DNA ligase in the extract. Therefore DNA cutting is a necessary part of the DNA packaging reaction. The protein product of gene A, called A protein, behaves like the enzyme that cuts DNA and is a necessary component of the extract.Three of the head proteins preassemble into a spherical shell that subsequently combines with DNA. These shells are made of E protein, the major protein of a finished head, and they can be the sole source of that protein. They also contain a few molecules of two processed proteins, fused C-E and cleaved B. The processing may be essential for assembly because other shells that contain C protein not fused and B protein uncleaved are less than 1% as active.Protein A and DNA first react with the protein shells, then D protein, the second most abundant head protein, is added. These new observations are combined with published data to develop a comprehensive view of λ head assembly.
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  • 120
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    Journal of Supramolecular Structure 2 (1974), S. 360-371 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The basal structure of the flagellum controls both activity and assembly. In order to define the steps involved in these processes, genetic analysis was performed. Twenty genes were found to be required for the complete assembly and function of the organelle. FlaE controls the length of the hook, flaA is required both to maintain flagellar structure and for chemotaxis, and flaI plays a role in regulating the synthesis of the entire structure. Mutations mapping close to flal (the cfs mutations) release flagellar synthesis from control by catabolite repression.The basal structure was purified and isolated. On SDS acrylamide gel electrophoresis, it contained at least six distinguishable components. One major band corresponded to the hook subunit with an apparent molecular weight of 42,000 daltons. The others had apparent molecular weights of 60,000, 40,000, 28,000, 25,000, and 18,000 daltons. The genes that correspond to these polypeptides have not been identified.In exploring the role of the mot and che genes, assays were developed for the function of individual flagellar filaments. The filaments were found to rotate and rotation could be modulated by changing their direction. Chemotaxis results from the modulation of flagellar rotation. Using the rotation assay the response of nonmotile cells to attractants and repellents was followed.
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  • 121
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    Journal of Supramolecular Structure 2 (1974), S. 412-428 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The mechanism of microtubule polymerization and depolymerization has been studied with protein purified from extracts of porcine brain. Under polymerizing conditions characteristic microtubules composed of parallel protofilaments are observed in the electron microscope. Under depolymerizing conditions three forms are observed: double rings of outside diameter 49 nm, spirals, and 7-nm globular subunits. Under the same conditions two boundaries are observed in the analytical ultracentrifuge at 6S and 36S, whether depolymerization is accomplished by cooling to 0°C, by addition of 1 mM CaCl2 at 25°C, or by removal of GTP. On polymerization all of the 36S and most of the 6S is converted to a fast-sedimenting form which the electron microscope reveals to be microtubules.The depolymerization mixture may be fractionated by gel chromatography into two fractions, one consisting solely of 6S and the other mostly 36S. Neither fraction regenerates the original equilibrium mixture. The 36S form may be reversibly dissociated into 6S subunits by addition of NaCl. From these and other considerations we have postulated that microtubule protein is composed of two different types of tubulin, both of which participate in polymerization. Studies are reported showing that colchicine does not dissociate microtubule rings but blocks polymerization by interfering with their proper lateral association into a protofilament array within microtubules. The role of GTP in polymerization is also discussed. Electron micrographic evidence is presented suggesting the conversion of protofilaments directly into rings and spirals, and a pathway for microtubule assembly is proposed.
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  • 122
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    Journal of Supramolecular Structure 2 (1974), S. 517-528 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: A brief description of endocytosis and exocytosis is followed by a discussion of the experimental approaches to the study of the initial events of endocytosis, the possible involvement of microfilaments, and in particular the possible role of membrane lipids in the events of membrane fusion. Recently developed model systems are also discussed.
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  • 123
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    Journal of Supramolecular Structure 2 (1974), S. 17-31 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: From an analysis of electron micrographs of Alfalfa Mosaic Virus (AMV), evidence has been obtained which favors a cylindrical P6 lattice for the protein coat of the virus. For the analysis use was made of optical diffraction and computer processing of electron images of negatively stained virus particles.The virus coat exhibits polymorphism. Two kinds of structure were found: a stacked and a helical type. In the stacked type of lattice the unit cells are arranged in staggered rings in such a way that two rings comprise a repeat distance of the structure. The selection rule for the optical diffraction patterns of the stacked form is 1 = n + 2m, in which n is an integer multiple of 3. The layerlines are equally spaced at a distance of approximately 1/80 Å-1.In the helical type of lattice these rings of unit cells are transformed into turns of a double helix. The selection rule derived in this case is 1 = 6n - 17m, in which n is an integer multiple of 2. The repeat of the structure is approximately 440 Å.
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  • 124
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    Journal of Supramolecular Structure 2 (1974), S. 81-81 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 125
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    Journal of Supramolecular Structure 2 (1974), S. 121-137 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
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  • 126
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    Journal of Supramolecular Structure 2 (1974), S. 196-201 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Bacteriophage T4 tail fibers are rodlike structures with a contour length of about 1400 Å, a diameter of about 45 Å, and a total mass of about 600,000 daltons. The assembly of the tail fibers and their subsequent attachment to the phage particle are under the control of 8 phage-induced proteins. The gene control and molecular weight of each protein are known. The sequence of gene-controlled steps has been determined by the characterization of intermediates that accumulate when various steps are blocked by mutation. The protein composition of the fibers and their precursors has been determined by purification and electrophoretic analysis.Four of the eight gene products are structural components of the tail fiber. These proteins are P34 (150,000 daltons, 2 copies), P37 (120,000 daltons, 2 copies), P35 (40,000 daltons, 1 copy), and P36 (24,000 daltons, 2 copies). The wac (whisker antigen control) gene product is a structural component of the phage whiskers. The remaining three gene products, P38, P57, and P63, are not structural components of the phage particle. Both P63 and the wac gene product promote the attachment of tail fibers to the phage particle. P63 has been shown to act catalytically. Both P38 and P57 are somehow involved in the folding of the major tail fiber structural proteins (P37 and P34). The normal requirement for P38 and P57 functions can be bypassed by secondary mutations.
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  • 127
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    Journal of Supramolecular Structure 2 (1974), S. 225-238 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Phage P22 is known to have a linear duplex chromosome which is circularly permuted and terminally repeated. The propagation of these features of the mature phage DNA is accounted for by the fact that phage DNA lengths (headfuls) are cut from an intracellular intermediate form of phage DNA several phage genomes in length (concatemer) as first suggested by Streisinger. Studies with mutant phages show that cutting of concatemer DNA is intimately connected to the morphogenesis of the phage head.We have also found, by constructing a partial denaturation map of mature P22 DNA, that circular permutation in P22 DNA is restricted: all of the ends of the mature DNA fall within 20% of each other on the physical map. The limited distribution of ends can be explained by Streisinger's “headful” packaging model with the additional specifications that: a. the intracellular precursor DNA is no longer than ten times the length of mature phage DNA; b. encapsulation of DNA starts at a unique site; c. encapsulation proceeds sequentially therefrom.This model is supported by the distribution of molecular ends in denaturation maps of two deletion phage DNAs. We found, as expected from our model, that the extent of permutation is a direct function of the length of terminal repetition.
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  • 128
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    Journal of Supramolecular Structure 2 (1974), S. 393-411 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Tubulin obtained from disassembly of microtubules at 0°C exists in two forms: 6-S tubulin and a larger, curved or ring-shaped filament. These two forms have been separated chromat ographically and their roles in assembly examined. The purified rings reassemble to microtubules with high efficiency by uncoiling and straightening out, to be incorporated directly as protofilaments in the microtubule wall, and are thus identified as preformed protofilaments. Purified 6-S tubulin has not been observed to reassemble into microtubules by itself but will contribute to assembly when mixed with rings. Addition of glycerol at 0°C induces the 6-S tubulin to form rings, and the treated fraction will then reassemble to microtubules. Electron microscope observations indicate that assembly begins with the formation and growth of an incomplete microtubule wall. This wall grows wider by the addition of new protofilaments until the intact, circular microtubule, with 13 protofilaments, is formed. It is suggested here that growth of this wall from individual 6-S tubulin subunits may be energetically unfavorable. The direct incorporation of preformed protofilaments may be much more favorable, in which case the rings would be required for this initial stage of assembly.
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  • 129
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    Journal of Supramolecular Structure 2 (1974), S. 593-608 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: ESR analysis of membranes from cultured animal cells reveals a more complex lipid phase behavior than that displayed by ideal binary lipid systems. When endoplasmic reticulum membranes from LM cells are spin labeled with a nitroxide derivative of decane, 5N10, and scanned by ESR at 1° C-intervals, the partitioning of 5N10 between the hydrocarbon and aqueous portions of the membrane suspension undergoes thermotropic changes at characteristic temperatures of 9°, 16°, 22°, 32°, and 38° C. Lipids extracted from these same membranes, however, exhibit only two characteristic temperatures, 16° and 35° C, and in this respect resemble binary lipid systems. The phase behavior of lipids in animal cell membranes is suggestive of an organized distribution of lipid which is disrupted by extraction. In support of this, mathematical treatment of the partitioning data indicates that four of these characteristic temperatures can define the boundaries (i.e., the t1 and th ) of two independent phase transitions in endoplasmic reticulum membranes. These results are similar to those of a physical treatment of data from plasma membranes of both mouse and chick cells in which the two monolayers appear to exist as independent physical entities with different physical properties. The most probable phase boundaries for the two monolayers of the endoplasmic reticulum membranes studied here are 16° and 32° C for one monolayer and 22° and 38° C for the other.
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  • 130
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    Journal of Supramolecular Structure 2 (1974), S. 466-485 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Long chain glycols augment in size and birefringence the in vivo mitotic apparatus (MA) of marine eggs. Dinitrophenol and caffeine antagonize the effect but they can be balanced by glycols. Caffeine inhibits the phosphodiesterase for cyclic AMP (CAMP) and CAMP levels increase in its presence. However, added dibutyryl CAMP does not affect MAs or cleavage, but is taken up by eggs. Oxygen uptake studies show that caffeine depresses oxidative metabolism but does not affect ATP levels. Action through the pentosephosphate shunt is suggested.Glycols influence the assembly of tubulin. Optical ultracentrifuge patterns of tubulin polymerized without glycol show a 6S and 30S peak. Similar patterns of tubulin polymerized at pH 6.4 in glycol and depolymerized in its absence show 6S, 8-18S, and 30S, peaks. The 8-18S peak appears in equilibrium with the 6S peak. If glycol is added to cold tubulin polymerized without glycol, only 6S and 30S peaks occur. Preparations with no 30S peak do not show 450 Å rings in the EM. Calcium depolymerizes microtubules. In the absence of glycols 450 Å rings are seen. In the presence of glycol, much higher concentrations of calcium are necessary for depolymerization, and few 450 Å rings occur.We suggest that glycols prevent formation of the stable 30S peak, favor an intermediate structure in equilibrium with the 6S peak, and antagonize calcium depolymerization. Their in vivo effects may arise from these interactions.
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  • 131
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    Journal of Supramolecular Structure 2 (1974), S. 496-511 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Enveloped viruses which form by budding at the cell surface possess a membrane consisting of a lipid bilayer and a small number of virus-coded polypeptides. Since viral polypeptides become integral components of the plasma membrane during assembly, the process of synthesis and incorporation into membranes of these proteins may reflect the pathway of plasma membrane assembly. Electron microscopic studies have suggested that viral envelope proteins are incorporated into discrete, localized regions of the plasma membrane which serve as recognition sites for the viral nucleocapsid. In influenza virus-infected cells, viral polypeptides are associated with cytoplasmic membranes as well as the plasma membrane. The major envelope glycoprotein appears to be synthesized in rough endoplasmic reticulum, and to migrate to smooth membranes after synthesis. Glycosylation is initiated in rough membranes and progresses further in smooth membranes. Unlike the glycoproteins, the major nonglycosylated polypeptide appears to be inserted directly into the plasma membrane. In the presence of 2-deoxyglucose or high concentrations of glucosamine, aberrant viral glycoproteins are detected which appear to be unglycosylated or partially glycosylated; these are associated with membranes and incorporated into virus particles of reduced infectivity. Therefore normal glycosylation is not essential for incorporation of viral glycoproteins into cellular membranes or virus particles, but is required for normal biological activity. The role of the viral neuraminidase in assembly and release has been studied using mutants defective in neuraminidase at restrictive temperature. Under these conditions virus formation occurs, but the progeny form large aggregates at the cell surface. Colloidal iron hydroxide staining indicates that such virus particles contain neuraminic acid, and these residues appear to serve as receptors leading to the extensive aggregation.
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    Journal of Supramolecular Structure 2 (1974), S. 71-78 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Bilayers of human erythrocyte apoprotein-lipid complexes were made by dipping a mica plate through monolayers of the complex formed at the air-water interface. Stearic acid and erythrocyte lipid alone served as controls. Freeze-fracture images of the complex at high lipid surface pressures (30 dynes/cm) showed particles (average diameter, 109 Å ± 18 Å) similar to those of erythrocyte ghosts (average diameter, 102 Å ± 19 Å). Control surfaces were smooth. We conclude that part or all of the protein molecule penetrated into the lipid bilayer and that erythrocyte apoprotein-lipid complexes yield fracture faces similar to the native erythrocyte membrane.
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    Journal of Supramolecular Structure 2 (1974), S. 79-80 
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    Keywords: Life Sciences ; Molecular Cell Biology
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  • 134
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    Journal of Supramolecular Structure 2 (1974), S. 99-102 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The structure and self-assembly of collagen and procollagen molecules are reviewed. The registration peptides of procollagen have specific recognition properties which assure (1) selection of component polypeptide chains and (2) registration of their N-termini, facilitating orderly folding into a collagen helix. The stability of this helix relative to body temperature is critically altered by post-ribosomal hydroxylation of proline residues. The registration peptides of procollagen may have additional functions such as preventing intracellular fiber formation.
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  • 135
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    Keywords: Life Sciences ; Molecular Cell Biology
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    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The three-dimensional structure of the multisubunit allosteric enzyme, aspartate transcarbamylase, has been determined to 5.5 Å resolution. An unusual feature of the molecule is a large central aqueous cavity 50 Å × 50 Å × 25 Å, into which the active sites face. Access to the central cavity and the active site region is provided by six equivalent channels of 15 Å diameter.A complex C6R4, composed of catalytic trimers C3 and of regulatory dimers R2, has been isolated upon treatment of aspartate transcarbamylase (ATCase, C6R6) by mercurials. The specific catalytic activity of C6R4 is essentially the same as that of ATCase, about 70% of that of the catalytic trimers at 30 mM aspartate and saturating carbamyl phosphate. Allosteric interactions are reduced in C6R4 as compared with those in ATCase. In the homotropic interactions the Hill coefficient is reduced from approximately 3.3 to 2.1 at pH 8.3, while the heterotropic interactions of both cytidine triphosphate (CTP) and adenosine triphosphate (ATP) are reduced substantially but not abolished at pH 8.3. Thus, the allosteric transitions involved in the regulatory mechanisms do not require the intact structure C6R6. Also, this regulation is not simply the control of access of substrates or products to or from the large central aqueous cavity in the ATCase molecule.Comparison of electron density maps at 5.5 Å resolution for ATCase and for the complex of ATCase with CTP shows substantial similarities throughout the three-dimensional electron density maps. Significant differences are seen, however, in the region of the regulatory dimers R2 where CTP adds, and near the active sites in the catalytic trimers C3.
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  • 136
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    Journal of Supramolecular Structure 2 (1974), S. 166-177 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The assembly of E. coli ribosomes has been studied through the analysis of a new group of ribosome maturation mutants. These mutants, all blocked in a late stage in the maturation of 50S ribosomes, map at four different sites on the chromosome. These sites are distant from the known ribosomal protein sites at the str-aro E region of the chromosome. The ribosome precursor particles of the mutants contain precursor-type 23S RNA (p23 RNA) and 5S RNA. 43S particles of one of the mutants contain all but one of the normal complement of proteins. Precursor 43S particles from this mutant can be converted to particles with sedimentation values around 50S by incubation with extracts from either the wild-type organism or from other mutants. This in vitro conversion process differs considerably from the process of ribosome reconstitution and indicates a role for extrinsic factors in the maturation of E. coli ribosomes.
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  • 137
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    Journal of Supramolecular Structure 2 (1974), S. 239-252 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Mutants in gene U of phage λ produce polytails. Those polytails have a tail fiber and a basal part like normal tails, but their major tubular part is longer than that of normal tails and shows a wide length distribution.We established the morphogenetic pathway of the λ tail and found that U gene product (pU) acts throughout the assembly of the major tail protein (pV). Polytails in U- lysate are activated by pU in vitro and form long-tailed phage which are infectious to a small extent.If the formation of the basal part of the tail is blocked, pV (the major tail protein) remains unassembled as long as pU is present in the cell. However, we found that part of pV assembles into giant polytubes of several microns in length in lysates of a double mutant U- · H- in which both the basal part and pU are absent.pV in purified tails can be dissociated into disks (about 10S) or smaller units (about 2.5S) in vitro under extreme conditions. The disks form polytubes efficiently under physiological conditions, but the smaller units do not form polytubes efficiently. The smaller units have in vitro complementation activity with V- lysate. In vitro complementation activities with V-, U-, and Z- lysates are detected in the dialyzed extracts of SDS gel electrophoresis of purified tails. The molecular weights of the polypeptide chains containing those activities are estimated to be 31,000, 14,000 and 20,000 daltons, respectively.
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  • 138
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    Journal of Supramolecular Structure 2 (1974), S. 372-384 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Formation of a flagellar filament of Salmonella from its component protein, flagellin, is in principle a self-assembly process, which proceeds by the addition of flagellin monomers one by one to the distal end of the filament. Upon their polymerization, a conformational change of flagellin molecules occurs, and it confers polarity to the filament. For the initiation of in vitro flagellin assembly in a solution of physiological ionic strength and pH, it is essential to add fragments of flagellar filaments, which work as seeds for the polymerization of flagellin monomers. When an appropriate concentration of some anion known as a good salting-outer is added to the solution, the polymerization begins without addition of seed. Assembly of flagellins in vivo begins at the distal end of each hook. The distal ends of the hooks on the cells of a flagellin-less mutant were shown to initiate the assembly of exogenous flagellin in vitro, although the efficiency was not as high as that of the in vivo initiation. A flagellar filament elongates in vitro at a constant rate as long as a sufficient amount of flagellin is supplied, and the elongation terminates by an error occurring at the growing end of the filament. On the contrary, the rate of in vivo elongation decreases exponentially with increase of the length of the filament. Initial rate of the in vivo elongation depends on growth condition of the bacteria, while decrease of the rate per unit filament length is little affected by the growth condition. The observed limit in length of the flagellar filaments on growing bacteria is expected from the exponential decrease of their rate of elongation. The decrease of the in vivo elongation is correlated with the lowering of the transportation efficiency of flagellin monomers on their passage from the cell body through the central canal of a flagellar filament to the tip.
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    Journal of Supramolecular Structure 2 (1974) 
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    Keywords: Life Sciences ; Molecular Cell Biology
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  • 140
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    Keywords: Life Sciences ; Molecular Cell Biology
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    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Asynchroneous T4 phage head maturation includes the step of P23 cleavage: P23 of head-related τ-particles is cleaved into P23This paper is part of the thesis of R. K. L. Bijlenga. It is number X of the series: “Studies on the morphopoieses of the head of phage T-even.” of capsids with a conservative mode of transformation as evidenced by “heavy” labeling in temperature shift-down experiments with mutant 24 (tsL90). Assuming a subunit pool, data indicate in situ cleavage on individual precursor particles. The interpretation becomes less interesting when assuming a compartmentation of the membrane surface; this hypothesis is not ruled out.
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  • 141
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    Journal of Supramolecular Structure 2 (1974), S. 60-70 
    ISSN: 0091-7419
    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The formation and stabilization of a complex between total erythrocyte apoprotein and monolayers of total erythrocyte lipid as measured by changes of surface pressure (Δπ) and rate of change of surface pressure (dπ/dt) was studied as a function of pH, ionic strength, and lipid surface pressure. Penetration of apoprotein into lipid monolayers was favored by conditions in which lipid and apoprotein were oppositely charged. Once the interaction was completed, the resultant surface complex was resistant to large changes in subphase pH and ionic strength as shown by the insensitivity of Δπ to these parameters. The dπ/dt, however, showed strong dependence on pH and ionic strength, but not on lipid surface pressure. A sharp decrease in dπ/dt around pH 3.5-4.5 is associated with the change in apoprotein charge from (+) to (-). Comparison of complex formation between apoprotein and bovine serum albumin, cytochrome c, and human hemoglobin suggests that erythrocyte apoprotein was specialized in its interaction with erythrocyte lipids. The data show that formation of an apoprotein-lipid complex at the air-water interface has both electrostatic and hydrophobic components. This contradicts results from other laboratories studying erythrocyte membrane recombination by bulk methods.
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    Journal of Supramolecular Structure 2 (1974), S. 103-107 
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    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Disulfide-linked, triple-stranded procollagen (pro γ 112) was isolated from chick embryo skull bones. It was reversibly denatured and renatured as judged by sedimentation properties and susceptibility to digestion with pepsin. Refolding was an intramolecular process and aggregation between molecules did not occur.
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    Journal of Supramolecular Structure 2 (1974), S. 138-149 
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    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: The formation of fibrin gels involves many operations which are fundamental to other assembly schemes, including limited proteolysis, spontaneous associations, and covalent stabilization. Despite a quarter century of intensive effort by a large number of laboratories, the orientation of the fundamental units in the gel is not known, nor, for that matter, is the arrangement of the subunit chains within the parent fibrinogen molecule. In this article some symmetry considerations are discussed in light of the geometry of the starting molecules and conditions necessitated by the covalent stitching which occurs after gel formation. Only a dimeric molecule in which the twofold symmetry axis coincides with a minor axis of an elongated fibrinogen molecule satisfies all the conditions.
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    Journal of Supramolecular Structure 2 (1974), S. 178-188 
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    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
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    Journal of Supramolecular Structure 2 (1974), S. 385-392 
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    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
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    Journal of Supramolecular Structure 2 (1974), S. 486-495 
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    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Structural studies of tomato bushy stunt virus and Sindbis virus are discussed in terms of the information they provide about specificity and control in virus and membrane assembly.
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    Journal of Supramolecular Structure 2 (1974), S. 529-537 
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    Keywords: Life Sciences ; Molecular Cell Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 395-411 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics , Technology
    Notes: The design and implementation of software for real-time spectral analysis on an IBM 1130 with 8k core is described. The procedures for estimation of coherence and cross-spectra are discussed in detail.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 381-394 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics , Technology
    Notes: The Fast Fourier Transform is employed as a method of Laplace transform inversion to solve problems in the civil engineering fields of visco-elasticity and hydrology. When these problems are accurately represented by a linear time-invariant model, it is shown that the Fast Fourier Transform inversion procedure is often more accurate than standard convolution and inversion techniques. The speed and accuracy of solution resulting from this application of the Fast Fourier Transform is illustrated by referring to case studies solved on an IBM 1130 computer, model 3D processor with 32K memory.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 427-439 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics , Technology
    Notes: Stress fields near crack tips in an elastic body can be specified by the stress intensity factors which are closely related to the stress singularities arising from the crack tips. These singularities, however, cannot be represented exactly by conventional finite element models. A new method for the analysis of stresses around cracks is proposed in this paper on the basis of the superposition of analytical and finite element solutions. This method is applied to several two-dimensional problems whose solutions are obtained analytically, and it is shown that their numerical results are in excellent agreement with analytical ones. Sufficiently accurate results can be obtained by the conventional finite element analysis with rather coarse mesh subdivision. Computational efforts are then considerably reduced compared with other methods.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 447-447 
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    Keywords: Engineering ; Engineering General
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 454-456 
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    Keywords: Engineering ; Engineering General
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 456-456 
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    Keywords: Engineering ; Engineering General
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 467-473 
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    Notes: A generalized variational principle is presented, which leads to a modified finite element approach for three-dimensional field problems. Both, potential function and velocity field, are approximated by expansions which are continuous across the inter-element boundaries. The rapid convergence of this mixed model is shown by two examples.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 497-509 
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    Notes: A computer program for the in-core solution of large, sparse, unsymmetric systems of linear equations is presented in this paper. The program employs elimination techniques for solution of systems of linear equations. A limited number of zeros is stored and trivial arithmetic is by-passed to preserve computer storage and to reduce the time required for solution. Several techniques for selecting the pivotal elements are discussed and their effect on accuracy and computational time are examined.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 521-527 
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    Notes: Numerical methods are used to investigate the two-dimensional motion of a viscous incompressible fluid impulsively started past a flat plate of finite breadth at zero incidence to the uniform motion of the fluid at large distances from the plate. A step by step integration in time of Helmholtz's vorticity equation is used for Reynolds numbers 10-500.The magnetohydrodynamic case is also considered with the applied magnetic field at infinity parallel to the uniform stream and the non-conducting plate. Results for the Magnetic Reynolds number 50 and infinite, Viscous Reynolds number 50 and 0≤β≤2, where β is the ratio of the square of the Alfvén speed to the square of the main stream velocity, are presented.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 608-608 
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 43-55 
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    Notes: A new family of triangular finite elements is described, useful for solving the axisymmetric vector Helmholtz equation, and a variety of scalar Helmholtz equation problems which lead to generalized Bessel equations of some order m. This family is similar in principle to the scalar axisymmetric Helmholtz elements derived earlier, but requires both reformulation of its describing equations and corresponding new universal element matrices, for successful computational implementation. The necessary formulation is given in this paper. Matrix elements to the sixth-order inclusive have been calculated and extensively tested computationally.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 57-67 
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    Notes: The criteria for stability of the explicit finite difference solution of the one-dimensional, transient, conduction heat transfer problem with both radiant and convection heat transfer at the boundaries are considered in this paper. These criteria are governed by an inequality set from a functional relationship between the newly calculated and the old temperature at each node.From the node with the most stringent criteria, it is shown that setting the coefficient of the old temperature equal to zero in the governing difference equation is not sufficient for a general criterion. On the other hand, setting the derivative of the new temperature with respect to the old temperature equal to zero in the governing difference equation presents a simple, straightforward technique for obtaining a sufficient condition for a stable system. It is further shown that the second law of thermodynamics, written in explicit finite difference form, does present a necessary criterion for stability. However, the second law, because it is in the form of an inequality, does not present as simple a criterion as the derivative method does.The specific problem studied is a finite thickness slab, initially at a uniform temperature, but instantaneously subjected to both radiation and convection on its two surfaces. Temperature profiles were calculated on a digital computer and are presented in dimensionless graphical form over a range of five dimensionless parameters. A plot that relates stability to the maximum time-step size for the entire range of practical conditions of radiation numbers is also presented.
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    International Journal for Numerical Methods in Engineering 7 (1973) 
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 117-124 
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    Notes: A theorem expressing geometric conditions necessary and sufficient for the stiff stability of a linear multistep method is obtained. A corollary to this theorem provides sufficient conditions for stiff stability, for the class of algorithms characterized by a single essential root. By applying the Schur-Cohn criterion and employing a computerized algebraic manipulation program, the result provides a first step towards an exhaustive search technique for determining a continuum of members of this class.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 175-183 
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    Notes: A method is described for the solution of large sets of sparse equations arising in structural analysis. This method, called partial elimination, combines the concepts of elimination and iteration in such a way that good convergence rates can be obtained using a computer storage space not much greater than that required for other iterative methods.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 211-223 
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    Notes: A survey of recent developments in sparse matrix technology is presented. Two fundamental areas are reviewed: 1.Sorting and reordering techniques by which the non-zero elements of a given sparse matrix can be rearranged to obtain a form which leads to more efficient computations.2.Direct methods for solving systems of linear equations and computing inverses.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 240-240 
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 155-173 
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    Notes: The present investigation examines the multibar truss optimization problem in the context of a general class of unconstrained optimization procedures in conjunction with various types of penalty function transformations. Specifically, the problem is transformed into a series of unconstrained minimization problems using the penalty function techniques of Heaviside and SUMT. These are solved using the methods of Rosenbrock (orthogonal directions), Powell (conjugate directions) and Nelder-Mead (Simplex). This resulted in many cases in substantial improvements being recorded over previously reported data. The paper includes a comparative study of the synthesis based on these procedures.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 461-477 
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    Notes: Computer-oriented mesh generators, which serve as pre-processors to finite element programs, have recently been developed by several investigators to alleviate the frustration and to reduce the amount of time involved in the tedious manual subdividing of a complex structure into finite elements. Our purpose here is to describe how the techniques of bivariate ‘blending-function’ interpolation, which were originally developed for, and applied to, geometric problems of computer-aided design and numerically controlled machining of free-form surfaces such as automobile exterior panels, can be adapted and applied to the problems of mesh generation for finite element analyses. We concentrate attention on the problem of curvilinearly co-ordinating simply connected planar domains R by constructing invertible maps of the unit square S ≡[0, 1] × [0, 1] onto R. Extensions of the methods described herein to shells in 3-space is straightforward and is illustrated by a practical example taken from the automobile industry. Analogous mesh generators for three-dimensional solids can be developed on the basis of the trivariate ‘blending-function’ formulae found at the end of the second section.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 309-323 
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    Notes: Various solutions of laminated plates by the finite element method are analysed. An efficient solution of skew (or rectangular) laminated plates with small effect of σz and ∊z stress and strain components is developed. It can be used with an arbitrary number of layer elements (sub-elements) in different plate elements. Some remarks to the possible modification of solution are presented. Numerical examples with a short discussion and conclusions complete the paper.
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    Notes: The hybrid-element concept and the complex variable technique have been adopted for constructing a special super-element to be used jointly with conventional finite elements for the analysis of elastic stress intensity factors for plane cracks. The use of the complex variable technique permits the proper consideration of the stress intensity at the crack tip, and it also leads to very efficient programming. The use of such a super-element in the finite element solution has been shown to be highly accurate when only a very coarse element mesh is used near the crack.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 345-355 
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    Notes: Consider a solid heat conductor with a non-linear constitutive equation for the heat flux. If the material is anisotropic and inhomogeneous, the heat conduction equation to be satisfied by the temperature field θ(x, t) is, \documentclass{article}\pagestyle{empty}\begin{document}$$ \rho c\frac{{\partial \theta }}{{\partial t}} = {\rm div}({\rm L}(\theta,{\rm x})[{\rm grad}\theta]) + q $$\end{document} Here L(θ, x) [grad θ] is a vector-valued function of θ, x, grad θ which is linear in grad θ, In the present paper, the application of the finite element method to the solution of this class of problems is demonstrated. General discrete models are developed which enable approximate solutions to be obtained for arbitrary three-dimensional regions and the following boundary and initial conditions: (a) prescribed surface temperature, (b) prescribed heat flux at the surface and (c) linear heat transfer at the surface. Numerical examples involve a homogeneous solid with a dimensionless temperature-diffusivity curve of the form κ = κ0(l + σT). The resulting system of non-linear differential equations is integrated numerically.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 405-408 
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    Notes: Several formulas are presented for the numerical integration of a function over a triangular area. The formulas are of the Gaussian type and are fully symmetric with respect to the three vertices of the triangle.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 413-425 
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    Notes: A limitation of most plate and shell discrete elements now in use is the shape of their undeformed geometry. Typically, the plan form of these elements is a straight-sided triangle or quadrilateral that linearly approximates the undeformed geometry while often using higher-order polynomials to approximate the deformed geometry. This modelling difference leads to inefficiencies that can be eliminated, as demonstrated by a new parametric discrete element based entirely on bicubic Hermite polynomials. This representation of element geometry corresponds to the bicubic Coon's surface patch widely used in design, which allows a common mathematical model for design and analysis. Consideration is given to automating the generation of these patches. Solutions are presented for several plate bending and plate stretching problems. The solutions are in good agreement with closed-form solutions and photoelastic results in the case of a stress-concentration problem. These data demonstrate that the new parametric discrete element maintains solution accuracy for plates with curved boundaries.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 443-446 
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    Notes: This paper compares the results obtained by the finite element method with ‘exact’ solutions to a given set of problems. These are the stresses on the boundary of a hole in an infinite plate, the plate being subjected to three different types of loading. Two types of element are used for these plane stress problems, triangular elements with constant strains and tri- angular elements with linearly varying strains. The problems are solved for two different meshes and the results shown are stresses along a radial section and the values derived for stress concentrations against the number of unknowns in each mesh.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 446-447 
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 450-451 
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 456-456 
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 459-466 
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    Notes: This paper is concerned with developments in mathematical modelling of turbo-generator units for use in the dynamic analysis of electrical power systems. Emphasis is placed on an over-all reduction in computing time, whilst retaining a high order of accuracy of transient response. Accurate linear models are then derived and provide an alternative to the piecemeal formulations hitherto employed in small signal analysis. These equations form a practical basis for the synthesis of optimal control systems for large alternators.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 475-487 
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    Notes: An essential feature of finite element methods of analysis for symmetrically loaded shells of revolution is the setting up of equations representing the response of a short ‘ring’ element to edge loading.In this paper the axisymmetric behaviour of a short elastic cylindrical shell element under edge loading is described in a new way by means of a matrix which is a combination of stiffness, flexibility and ‘neutral’ sub-matrices. The coefficients of the matrix are derived direct from the equations of the problem, which involves a trivial amount of work in comparison with conventional methods.The corresponding matrix for a short section of an arbitrary shell of revolution is set up with little additional effort, and its use is described for calculation of edge response coefficients for portions of spherical shells.Finally, the method is used to study by iteration the behaviour of a thin spherical shell of viscous material containing a rigid boss which is loaded radially inwards: changes in meridional profile are followed as deformation proceeds. Results are presented for both linear and non-linear viscous material.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 511-519 
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    Notes: The matrix eigenvalue problem Hui = λi ui is considered. It is shown that when a new approximate vector v(n+1) to u1 (the eigenvector of the lowest eigenvalue) is computed from the present one v(n) by the relation v(n+1) = (1- αH + βH2) v(n) or v(n+1) = (1- αH + βH2 - γH3) v(n), the convergence rate is at least double that of the gradient method which corresponds to set β = γ = 0. Moreover, by choosing parameters α, β, or γ properly, one can get about three to five times faster convergence rate than that of the latter method, for H having very small γ2-γ1 and very large λN (the largest eigenvalue), further modifications are suggested. The relation with the Richardson method is also discussed.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 553-563 
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    Notes: Three sector elements, two for plane stress problems (PSL and PSN) and one for plate bending problems (BSN), have been developed. Of the three elements, two are based on the natural mode technique. The elements have been applied to typical problems to test their performance.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 577-585 
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    Notes: The one-dimensional diffusion-convection equation is formulated with the finite element representation employing the Galerkin approach. A linear shape function and two-dimensional triangular and rectangular elements in space and time were used in solving the problem. The results are compared with finite difference solutions as well as the exact solution. As another example, the convective term is set equal to zero and these techniques are applied to the resulting heat equation and similar comparisons are made.
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 595-598 
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    International Journal for Numerical Methods in Engineering 6 (1973), S. 602-602 
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 94-98 
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 98-100 
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 125-136 
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    Notes: The problem of optimizing the prestressing force and the tendon configuration for an indeterminate prestressed structure with prescribed cross-sectional dimensions is formulated in linear programming form, The structure is subjected to multiple load conditions and constraints are related to the structural behaviour and to the tendon configuration.It is shown that the number of behaviour constraints at each point in the structure can be reduced, as they represent parallel hyperplanes in the design space. Necessary conditions for feasible solutions are derived. The method based on transformation of the design variables, is suitable for beams, frames, grids and plates. Its application is illustrated for the case of a prestressed bridge.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 242-242 
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 287-295 
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    Notes: This paper presents a triangular finite element for the solution of two-dimensional field problems in orthotropic media. The element has nine degrees of freedom, these being the potential and its two derivatives at each node.The ‘stiffness’ matrix is derived analytically so that no further integration is required when computations are performed using the element.The results obtained using the element are compared with the exact mathematical solution of both a temperature distribution and a torsion problem.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 273-286 
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    Notes: In using the finite element method to compute a transient response, two choices must be made. First, some form of mass matrix must be decided upon. Either the consistent mass matrix prescribed by the finite element method can be employed or some form of diagonal mass matrix may be introduced. Secondly, some particular time integration procedure must be adopted. The procedures available divide themselves into two classes: the conditionally stable explicit schemes and the unconditionally or conditionally stable implicit schemes. The choices should be guided by both economy and accuracy. Using exact discrete solutions compared to the exact solutions of the differential equations, the results of these choices are displayed. Concrete examples of well-matched methods, as well as ill-matched methods, are identified and demonstrated. In particular, the diagonal mass matrix and the explicit central difference time integration method are shown to be a good combination in terms of accuracy and economy.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 337-344 
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    Notes: A curved cubic triangular element which has as nodal parameters the value of the function and its two derivatives is derived by use of a transformation similar to that used for quadrilateral isoparametric elements. A special form of the element which may be used to satisfy the condition that the function is constant along a boundary is also presented.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 137-154 
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    Notes: This paper shows how analytic surfaces can be used to define the vanes of an impeller of a centrifugal compressor. The analysis has been given of a cubic-linear patch for representing three-dimensional geometries. An example has shown how this type of patch can be successfully used to model the geometry of centrifugal or mixed flow impellers having 'swept back vanes at the outlet.The analysis has been programmed for the Atlas computer at the Computer Aided Design Centre (CADC), Cambridge and set up in such a way that the designer can examine systematically a range of impeller shapes.
    Additional Material: 11 Ill.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 185-194 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics , Technology
    Notes: The method of lowering the order of a matrix equation which describes the dynamics of a finite element model is presented. The finite element with a ‘truncated’ mass matrix is obtained for calculating thin plate vibrations. Such an element has one vibrational degree of freedom at each nodal point. In the case of uniform systems the accuracy provided by the suggested element is no less than that provided by the non-conforming elements, which have three vibrational degrees of freedom at each nodal point, and in some cases it is greater. The finite elements with a ‘truncated’ mass matrix have essential advantages in the study of non-uniform systems.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 395-400 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics , Technology
    Notes: An outline is given of a method for dealing with curved boundaries in finite difference calculations (relaxation or other similar techniques) where the gradient normal to the boundary is specified. Fluid flow calculations using the velocity potential are typical of such problems and the flow round a circular cylinder is computed as an example. The method makes no approximation which is not made in the usual finite difference techniques, therefore accuracy at the boundary is as good as in the remainder of the field.
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  • 194
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 410-410 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 195
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    International Journal for Numerical Methods in Engineering 7 (1973) 
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    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 255-271 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics , Technology
    Notes: A finite element method is presented for the transient analysis of large-displacement, small-strain problems with material non-linearities. The method employs a convected co-ordinate technique and a direct nodal force computational scheme of considerable efficiency. Detailed formulations are given for a plane, constant strain triangular element and a Euler-Bernoulli beam element. Results are presented for several example problems and compared with experimental data and other numerical solutions.
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 554-556 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics , Technology
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 560-563 
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    Keywords: Engineering ; Engineering General
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    International Journal for Numerical Methods in Engineering 7 (1973), S. 566-568 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics , Technology
    Additional Material: 1 Tab.
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    International Journal for Numerical Methods in Engineering 6 (1973) 
    ISSN: 0029-5981
    Keywords: Engineering ; Engineering General
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Mathematics , Technology
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