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  • 1
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2008. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 368 (2008): 117-126, doi:10.3354/meps07564.
    Description: Increased nutrient inputs to temperate coastal waters have led to increased occurrences of macroalgal blooms worldwide. To identify nutrients that are limiting to macroalgae and to determine whether different forms of these nutrients and long-term ambient nutrient conditions affect macroalgal response, we used in situ enrichment methods and tested the response of 2 bloom-forming species of macroalgae, Ulva lactuca and Gracilaria tikvahiae, from shallow estuaries of Waquoit Bay, Massachusetts, USA, that receive different land-derived N inputs. We enriched caged macroalgal fronds with nitrate, ammonium, phosphate, and N + P combinations, and measured growth, nutrient content, and δ15N signatures of fronds after 2 wk of incubation. In these estuaries, P did not limit growth, however, the 2 species differed in growth response to N additions. Growth of U. lactuca was greater in Childs River (CR), the estuary with higher nitrate inputs, than in Sage Lot Pond (SLP); growth in SLP increased with nitrate and ammonium enrichment. In contrast, growth of G. tikvahiae was greater in SLP than in CR, but had no growth response to N enrichment in either site. C and N contents differed initially between species and sites, and after nutrient enrichment. Final tissue % N increased and C:N decreased after nitrate and ammonium enrichment. δ15N values of the macroalgae demonstrated uptake of the experimental fertilizers, and a higher affinity and faster turnover of internal N pools with ammonium than nitrate enrichment in both species. We suggest that U. lactuca blooms in areas with both high nitrate and ammonium water column concentrations, and is more N-limited in oligotrophic waters where DIN levels are too low to sustain high growth rates. G. tikvahiae has a greater N storage capacity than U. lactuca, which may allow it to grow in less nutrient-rich waters.
    Description: We thank the following funding sources for supporting this research: NOS/ECOHAB grant #NA16OP2728, Palmer McCleod Fellowship awarded to M.T., NOAA/NERRS and EPA STAR graduate fellowships awarded to S.E.F., and NSF REU support awarded to C.A.
    Keywords: Macroalgal blooms ; Eutrophication ; Nutrient limitation ; N uptake ; Assimilation ; Ulva spp. ; Gracilaria spp. ; Nitrate ; Ammonium ; Phosphate
    Repository Name: Woods Hole Open Access Server
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  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2008. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Diseases of Aquatic Organisms 81 (2008): 219-229, doi:10.3354/dao01948.
    Description: Quahog Parasite Unknown (QPX) is the cause of mass mortality events of hard clams Mercenaria mercenaria from Virginia, USA, to New Brunswick, Canada. Aquaculture areas in Massachusetts, USA, have been particularly hard hit. The parasite has been shown to be a directly infective organism, but it is unclear whether it could exist or persist outside of its clam host. We used molecular methods to examine water, sediment, seaweeds, seagrass and various invertebrates for the presence of QPX. Sites in Virginia and Massachusetts were selected based upon the incidence of QPX-induced clam die-offs, and they were monitored seasonally. QPX was detectable in almost all of our different sample types from Massachusetts, indicating that the parasite was widely distributed in the environment. Significantly more samples from Massachusetts were positive than from Virginia, and there was a seasonal pattern to the types of samples positive from Massachusetts. The data suggest that, although it may be difficult to completely eradicate QPX from the environment, it may be possible to keep the incidence of disease under control through good plot husbandry and the removal of infected and dying clams.
    Description: This work is the result of research sponsored by NOAA National Sea Grant College Program Office, Department of Commerce, under Grant No. NA16RG2273, Woods Hole Oceanographic Institution Sea Grant Project No. R/B-168.
    Keywords: Quahog Parasite Unknown ; QPX ; Environmental detection ; Remediation
    Repository Name: Woods Hole Open Access Server
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  • 3
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2008. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 354 (2008): 35-46, doi:10.3354/meps07170.
    Description: We examined the effects of increased nutrient availability on nitrogen (N) dynamics in dominant New England salt marsh plants (tall and stunted Spartina alterniflora and S. patens) using paired large-scale nutrient and 15NO3– tracer additions. This study is one component of a long-term, large-scale, salt marsh nutrient and trophic manipulation study (the Trophic Cascades and Interacting Control Processes in a Detritus-based Aquatic Ecosystem [TIDE] Project). We compared physiological variables of plants in fertilized (~17× ambient N and P in incoming tidal water) and reference marsh systems to quantify NO3– uptake and uptake efficiency, allocation of N to tissues, end-of-season N resorption, leaf litter quality and other potential responses to increased nutrient availability. Reference system plants sequestered ~24.5 g NO3-N ha–1 d–1 in aboveground pools during mid-summer, while fertilized plants sequestered ~140 g NO3-N ha–1 d–1. However, NO3– uptake efficiency (% of total incoming NO3-N sequestered aboveground) was higher in the reference system (16.8%) than in the fertilized system (2.6%), suggesting that our fertilization rate (~70 µM NO3– in incoming water) approaches or exceeds the uptake saturation point for this vegetation community. Leaf litter quality was clearly affected by N availability; N resorption efficiency was lower in all plants of the fertilized system; senesced leaves from the fertilized creek contained ~43% (tall S. alterniflora), 23% (stunted S. alterniflora) and 15% (S. patens) more N per unit biomass than reference creek leaves.
    Description: This work was funded by National Science Foundation Grant DEB 0213767 and OCE 9726921.
    Description: 2013-02-07
    Keywords: Spartina alterniflora ; Spartina patens ; Plant ecophysiology ; Eutrophication ; Nitrogen isotopes ; Nitrogen cycling ; Marsh ecosystem
    Repository Name: Woods Hole Open Access Server
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  • 4
    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2005. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 294 (2005): 117-129, doi:10.3354/meps294117.
    Description: Effects of eutrophication on the relative importance of nutrients and macroherbivores as controls of microphytobenthic standing crop were examined in estuaries with different nitrogen loading rates: Sage Lot Pond (14 kg ha–1 yr–1), Green Pond (178 kg ha–1 yr–1), and Childs River (601 kg ha–1 yr–1). We selected 5 sites with similar salinity ranges on shallow-water, sandy substrates per estuary. In year-round experiments, we fertilized sediments with nitrogen + phosphorus to examine nutrient limitation. We conducted exclusion experiments to determine the significance of macroherbivores as controls of microphytobenthic biomass and examined possible interactions between nutrients and grazing in cages fertilized with nitrogen + phosphorus. Cages fertilized with nitrogen only were also included to determine if nitrogen availability was limiting. Nitrogen + phosphorus addition increased sediment chlorophyll a (chl a) content (herein used as a proxy for biomass) by a similar magnitude across estuaries. Grazer exclusion also increased chl a, but to a different extent across estuaries: the magnitude of the response increased with increasing nitrogen loading rates. We found no interactions between nutrients and grazing. Strong chl a increases in response to nitrogen only addition indicated N limitation in Sage Lot Pond and Green Pond. In the highly eutrophic Childs River estuary we found virtually no response to nitrogen-only additions, suggesting the possibility of phosphorus limitation in this estuary.
    Description: This study was supported by a Sounds Conservancy Fellowship awarded by the Québec-Labrador- Foundation.
    Keywords: Microphytobenthos ; Biomass ; Nutrients ; Grazers ; Eutrophication ; Nitrogen load
    Repository Name: Woods Hole Open Access Server
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  • 5
    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2006. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 310 (2006): 263-270, doi:10.3354/meps310263.
    Description: The longfin squid Loligo pealeii is distributed widely in the NW Atlantic and is the target of a major fishery. A previous electrophoretic study of L. pealeii was unable to prove genetic differentiation, and the fishery has been managed as a single unit stock. We tested for population structure using 5 microsatellite loci. In early summer (June), when the squids had migrated inshore to spawn, we distinguished 4 genetically distinct stocks between Delaware and Cape Cod (ca. 490 km); a 5th genetic stock occurred in Nova Scotia and a 6th in the northern Gulf of Mexico. One of the summer inshore stocks did not show genetic differentiation from 2 of the winter offshore populations. We suggest that squids from summer locations overwinter in offshore canyons and that winter offshore fishing may affect multiple stocks of the inshore fishery. In spring, squids may segregate by genetic stock as they undertake their inshore migration, indicating an underlying mechanism of subpopulation recognition.
    Description: We acknowledge funding from WHOI Sea Grant NA16RG2273, the Massachusetts Environmental Trust (#98-04), and the Sholley Foundation.
    Keywords: Fisheries ; Spawning migration ; Microsatellites ; Population structure ; Population recognition ; Null alleles
    Repository Name: Woods Hole Open Access Server
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  • 6
    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2006. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 307 (2006): 37-48, doi:10.3354/meps307037.
    Description: The fact that land-derived sources of nutrients promote eutrophication in the receiving coastal waters implies coupling between land and marine environments. Increasing nitrogen inputs in the estuaries are followed by major shifts in biota composition and abundances. In the present paper we used N and C isotopic ratios to analyze the coupling of benthic and pelagic components of food webs to estuaries receiving different N loads from their watersheds. We found that primary producers, benthic taxa, and fishes were coupled to the watersheds and estuaries where they were collected. In contrast, zooplankton was uncoupled. Primary consumers and predators feeding on benthic prey within the estuaries were also coupled to the watershed and estuaries, but predators feeding on zooplankton were not. We hypothesized that short water residence time in these estuaries uncoupled plankton from terrestrial influence. Stable isotopic measurements of N in producers, consumers, POM, and sediment in different estuaries of Waquoit Bay, Massachusetts, USA, demonstrate a consistent link between land-use on contributing watersheds and the isotopic ratio in all the benthic components and food webs. The remarkably consistent link suggests that the benthos was tightly coupled to land-derived inputs, and that these components, particularly macrophytes, could be good indicators for monitoring increases in land-derived N inputs. Our results showed that stable isotopes of N and C have the potential for use in basic research and applied monitoring, but need to be applied considering the features of estuaries that might couple or uncouple organisms regarding dependency on land, such as hydrodynamic exchanges.
    Description: P.M. was supported by a doctoral fellowship from CONICET (Consejo Nacional de Investigaciones Científicas y Técnicas, Argentina). This work was supported in part by ECOHAB Grant No. NA16OP2728.
    Keywords: Eutrophication ; Benthic coupling ; Pelagic coupling ; Land–estuary coupling ; Food webs ; Estuaries ; Waquoit Bay
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2006. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Diseases of Aquatic Organisms 72 (2006): 45-52, doi:10.3354/dao072045.
    Description: Quahog Parasite Unknown (QPX) is a thraustochytrid pathogen responsible for catastrophic mortalities of the northern quahog (hard clam) Mercenaria mercenaria. A real-time quantitative polymerase chain reaction (qPCR) assay was developed to assist research efforts on QPX ecology and pathology. Sensitivity of the assay was evaluated with serial dilutions of QPX-cultured cells to determine the lowest concentration of DNA that remained detectable in both the presence and absence of extraneous environmental substances. QPX cells were quantified before DNA extraction to calibrate standard curves to cell counts. Based on our results, the qPCR assay is able to quantify QPX within the range of 1 to several thousand organisms per reaction. Specificity of the assay was assessed by testing 29 thraustochytrid-like protists isolated from suspension-feeding bivalves from China, Oregon, Maryland, and Virginia. Application of the assay was demonstrated with positive qPCR results from naturally contaminated environmental samples including marine aggregates (i.e. marine snow), clam pseudofeces, and inflammatory nodules from infected clams. This quantitative assay for QPX will provide a valuable tool for characterizing QPX parasite abundances in coastal environments and for improving clam disease diagnostics.
    Description: This research was funded in part by NSF-NIH Ecology of Infectious Disease Grant (No. 0429018) to R.S. and a grant to R.S. and S.B.R. from the County of Barnstable, Massachusetts.
    Keywords: Quahog Parasite Unknown ; QPX ; Thraustochytrids ; Mercenaria mercenaria ; Real-time PCR ; Histology ; Marine aggregates ; Pseudofeces ; Clams
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2006. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Diseases of Aquatic Organisms 70 (2006): 115-122, doi:10.3354/dao070115.
    Description: Quahog Parasite Unknown (QPX) is a significant cause of hard clam Mercenaria mercenaria mortality along the northeast coast of the United States. It infects both wild and cultured clams, often annually in plots that are heavily farmed. Subclinically infected clams can be identified by histological examination of the mantle tissue, but there is currently no method available to monitor the presence of QPX in the environment. Here, we report on a polymerase chain reaction (PCR)-based method that will facilitate the detection of QPX in natural samples and seed clams. With our method, between 10 and 100 QPX cells can be detected in 1 l of water, 1 g of sediment and 100 mg of clam tissue. Denaturing gradient gel electrophoresis (DGGE) is used to establish whether the PCR products are the same as those in the control QPX culture. We used the method to screen 100 seed clams of 15 mm, and found that 10 to 12% of the clams were positive for the presence of the QPX organism. This method represents a reliable and sensitive procedure for screening both environmental samples and potentially contaminated small clams.
    Description: Quahog Parasite Unknown (QPX) is a significant cause of hard clam Mercenaria mercenaria mortality along the northeast coast of the United States. It infects both wild and cultured clams, often annually in plots that are heavily farmed. Subclinically infected clams can be identified by histological examination of the mantle tissue, but there is currently no method available to monitor the presence of QPX in the environment. Here, we report on a polymerase chain reaction (PCR)-based method that will facilitate the detection of QPX in natural samples and seed clams. With our method, between 10 and 100 QPX cells can be detected in 1 l of water, 1 g of sediment and 100 mg of clam tissue. Denaturing gradient gel electrophoresis (DGGE) is used to establish whether the PCR products are the same as those in the control QPX culture. We used the method to screen 100 seed clams of 15 mm, and found that 10 to 12% of the clams were positive for the presence of the QPX organism. This method represents a reliable and sensitive procedure for screening both environmental samples and potentially contaminated small clams.
    Keywords: Quahog Parasite Unknown ; Detection limit ; Seed clams ; SSU rDNA
    Repository Name: Woods Hole Open Access Server
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