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  • American Chemical Society  (444,121)
  • Institute of Physics  (214,495)
  • Cambridge University Press
  • Nature Publishing Group
  • 2010-2014  (379,282)
  • 1985-1989  (209,023)
  • 1950-1954  (88,875)
  • 1945-1949  (54,811)
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  • 1
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    Adaptive evolution of a key phytoplankton species to ocean acidification (2012)
    Nature Publishing Group
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    Publication Date: 2023-11-08
    Description: Ocean acidification, the drop in seawater pH associated with the ongoing enrichment of marine waters with carbon dioxide from fossil fuel burning, may seriously impair marine calcifying organisms. Our present understanding of the sensitivity of marine life to ocean acidification is based primarily on short-term experiments, in which organisms are exposed to increased concentrations of CO2. However, phytoplankton species with short generation times, in particular, may be able to respond to environmental alterations through adaptive evolution. Here, we examine the ability of the world’s single most important calcifying organism, the coccolithophore Emiliania huxleyi, to evolve in response to ocean acidification in two 500-generation selection experiments. Specifically, we exposed E. huxleyi populations founded by single or multiple clones to increased concentrations of CO2. Around 500 asexual generations later we assessed their fitness. Compared with populations kept at ambient CO2 partial pressure, those selected at increased partial pressure exhibited higher growth rates, in both the single- and multiclone experiment, when tested under ocean acidification conditions. Calcification was partly restored: rates were lower under increased CO2 conditions in all cultures, but were up to 50% higher in adapted compared with non-adapted cultures. We suggest that contemporary evolution could help to maintain the functionality of microbial processes at the base of marine food webs in the face of global change.
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  • 2
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    Interannual atmospheric variability forced by the deep equatorial Atlantic Ocean (2011)
    Nature Publishing Group
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    Publication Date: 2023-11-08
    Description: Climate variability in the tropical Atlantic Ocean is determined by large-scale ocean–atmosphere interactions, which particularly affect deep atmospheric convection over the ocean and surrounding continents1. Apart from influences from the Pacific El Niño/Southern Oscillation2 and the North Atlantic Oscillation3, the tropical Atlantic variability is thought to be dominated by two distinct ocean–atmosphere coupled modes of variability that are characterized by meridional4, 5 and zonal6, 7 sea-surface-temperature gradients and are mainly active on decadal and interannual timescales, respectively8, 9. Here we report evidence that the intrinsic ocean dynamics of the deep equatorial Atlantic can also affect sea surface temperature, wind and rainfall in the tropical Atlantic region and constitutes a 4.5-yr climate cycle. Specifically, vertically alternating deep zonal jets of short vertical wavelength with a period of about 4.5 yr and amplitudes of more than 10 cm s−1 are observed, in the deep Atlantic, to propagate their energy upwards, towards the surface10, 11. They are linked, at the sea surface, to equatorial zonal current anomalies and eastern Atlantic temperature anomalies that have amplitudes of about 6 cm s−1 and 0.4 °C, respectively, and are associated with distinct wind and rainfall patterns. Although deep jets are also observed in the Pacific12 and Indian13 oceans, only the Atlantic deep jets seem to oscillate on interannual timescales. Our knowledge of the persistence and regularity of these jets is limited by the availability of high-quality data. Despite this caveat, the oscillatory behaviour can still be used to improve predictions of sea surface temperature in the tropical Atlantic. Deep-jet generation and upward energy transmission through the Equatorial Undercurrent warrant further theoretical study.
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  • 3
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    The rates of dissolution of olivine, plagioclase, and quartz in a basalt melt (1985)
    Cambridge University Press
    Details
    Publication Date: 2023-07-19
    Description: The dissolution rates of spheres of two magnesian olivines, two plagioclases, and quartz in tholeiitic basalt have been determined at three super-liquidus temperatures and one-atmosphere pressure. There are considerable differences in the rates among the minerals, e.g. at 1210°, 12° above the liquidus temperature of the basalt, labradorite dissolves at 86 µm/h. and the magnesian olivines at 9 and 14 µm/h. The rates are not time dependent and this, coupled with the existence of concentration gradients in the composition of quenched melt adjacent to partially dissolved crystals, indicates that the dissolution rates are dictated by a combination of diffusion and convection of components to and from the crystal-liquid interface. Values for the activation enthalpy of dissolution are small for quartz and plagioclase (40–50 kcal mol−1) but large for olivine 73–118 kcal mol−1). Dissolution of plagioclase in rock melts seems to be a much more rapid process than crystal growth, whereas olivines apparently dissolve and grow at similar rates. Crystal dissolution is sufficiently slow that ascending, crystal-bearing magma may become superheated and yet fail to dissolve the crystal fraction before quenching; this may be the reason that olivine phenocrysts are often rounded.
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  • 4
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    An environmental bacterial taxon with a large and distinct metabolic repertoire (2014)
    Nature Publishing Group
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    Publication Date: 2023-02-14
    Description: Cultivated bacteria such as actinomycetes are a highly useful source of biomedically important natural products. However, such ‘talented’ producers represent only a minute fraction of the entire, mostly uncultivated, prokaryotic diversity. The uncultured majority is generally perceived as a large, untapped resource of new drug candidates, but so far it is unknown whether taxa containing talented bacteria indeed exist. Here we report the single-cell- and metagenomics-based discovery of such producers. Two phylotypes of the candidate genus ‘Entotheonella’ with genomes of greater than 9 megabases and multiple, distinct biosynthetic gene clusters co-inhabit the chemically and microbially rich marine sponge Theonella swinhoei. Almost all bioactive polyketides and peptides known from this animal were attributed to a single phylotype. ‘Entotheonella’ spp. are widely distributed in sponges and belong to an environmental taxon proposed here as candidate phylum ‘Tectomicrobia’. The pronounced bioactivities and chemical uniqueness of ‘Entotheonella’ compounds provide significant opportunities for ecological studies and drug discovery.
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  • 5
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    Coralline algal Barium as indicator for 20th century northwestern North Atlantic surface ocean freshwater variability (2013)
    Nature Publishing Group
    Details
    Publication Date: 2023-01-31
    Description: During the past decades climate and freshwater dynamics in the northwestern North Atlantic have undergone major changes. Large-scale freshening episodes, related to polar freshwater pulses, have had a strong influence on ocean variability in this climatically important region. However, little is known about variability before 1950, mainly due to the lack of long-term high-resolution marine proxy archives. Here we present the first multidecadal-length records of annually resolved Ba/Ca variations from Northwest Atlantic coralline algae. We observe positive relationships between algal Ba/Ca ratios from two Newfoundland sites and salinity observations back to 1950. Both records capture episodical multi-year freshening events during the 20th century. Variability in algal Ba/Ca is sensitive to freshwater-induced changes in upper ocean stratification, which affect the transport of cold, Ba-enriched deep waters onto the shelf (highly stratified equals less Ba/Ca). Algal Ba/Ca ratios therefore may serve as a new resource for reconstructing past surface ocean freshwater changes.
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  • 6
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    Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga (2013)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature 500 (2013): 453–457, doi:10.1038/nature12326.
    Description: Loss of sexual reproduction is considered an evolutionary dead end for metazoans, but bdelloid rotifers challenge this view as they appear to have persisted asexually for millions of years1. Neither male sex organs nor meiosis have ever been observed in these microscopic animals: oocytes are formed through mitotic divisions, with no reduction of chromosome number and no indication of chromosome pairing2. However, current evidence does not exclude that they may engage in sex on rare, cryptic occasions. Here we report the genome of a bdelloid rotifer, Adineta vaga (Davis, 1873)3, and show that its structure is incompatible with conventional meiosis. At gene scale, the genome of A. vaga is tetraploid and comprises both anciently duplicated segments and less divergent allelic regions. However, in contrast to sexual species, the allelic regions are rearranged and sometimes even found on the same chromosome. Such structure does not allow meiotic pairing; instead, we find abundant evidence of gene conversion, which may limit the accumulation of deleterious mutations in the absence of meiosis. Gene families involved in resistance to oxidation, carbohydrate metabolism and defence against transposons are significantly expanded, which may explain why transposable elements cover only 3% of the assembled sequence. Furthermore, 8% of the genes are likely to be of non-metazoan origin and were probably acquired horizontally. This apparent convergence between bdelloids and prokaryotes sheds new light on the evolutionary significance of sex.
    Description: This work was supported by Genoscope-CES (where most of the sequencing was performed), by US National Science Foundation grants MCB-0821956 and MCB-1121334 to I.A., by German Research Foundation grant HA 5163/2-1 to O.H., by grant 11.G34.31.0008 fromthe Ministry of Education and Science of the Russian Federation to A.S.K., by grant NSF CAREER number 0644282 to M.K., by US National Science Foundation grant MCB-0923676 to D.B.M.W., by FRFC grant 2.4.655.09.F from the Belgian Fonds National de la Recherche Scientifique (FNRS) and a start-up grant from the University of Namur to K.V.D.; J.F.F. and K.V.D. thank also J.-P. Descy (University of Namur) for funding support.
    Repository Name: Woods Hole Open Access Server
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  • 7
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    On latency of multiple zonal jets in the oceans (2012)
    Cambridge University Press
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    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2011. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 686 (2011): 534-567, doi:10.1017/jfm.2011.345.
    Description: Most of the nearly zonal, multiple, alternating jets observed in the oceans are latent, that is, their amplitudes are weak relative to the ambient mesoscale eddies. Yet, relatively strong jets are often observed in dynamical simulations. To explore mechanisms controlling the degree of latency, we analyse solutions of an idealized, eddy-resolving and flat-bottom quasigeostrophic model, in which dynamically generated mesoscale eddies maintain and interact with a set of multiple zonal jets. We find that the degree of the latency is controlled primarily by the bottom friction: the larger the friction parameter, the more latent are the jets; and the degree of the latency is substantial for a realistic range of the oceanic bottom friction coefficient. This result not only provides a plausible explanation for the latency of the oceanic jets, but it may also be relevant to the prominent atmospheric multiple jets observed on giant gas planets, such as Jupiter. We hypothesize that these jets can be so strong because of the relative absence of the bottom friction. The mechanism controlling the latency in our solutions is understood in terms of the changes induced in the linear eigenmodes of the time–mean flow by varying the bottom friction coefficient; these changes, in turn, affect and modify the jets. Effects of large Reynolds numbers on the eddies, jets, and the latency are also discussed.
    Description: Funding was provided: for P.B. by NSF grants OCE 0725796 and OCE 0845150, for J.T.F. by NSF grant OCE 0845150, for I.K. by NSF grant OCE 0842834, and for S.K. by the University Research Fellowship from the Royal Society. S.K. also acknowledges support from the Mary Sears Grant from the Woods Hole Oceanographic Institution.
    Description: 2012-09-27
    Keywords: Geostrophic turbulence ; Quasi-geostrophic flows ; Waves in rotating fluids
    Repository Name: Woods Hole Open Access Server
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  • 8
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    Chaotic advection in a steady, three-dimensional, Ekman-driven eddy (2014)
    Cambridge University Press
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2013. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 738 (2014): 143-183, doi:10.1017/jfm.2013.583.
    Description: We investigate and quantify stirring due to chaotic advection within a steady, three-dimensional, Ekman-driven, rotating cylinder flow. The flow field has vertical overturning and horizontal swirling motion, and is an idealization of motion observed in some ocean eddies. The flow is characterized by strong background rotation, and we explore variations in Ekman and Rossby numbers, E and Ro, over ranges appropriate for the ocean mesoscale and submesoscale. A high-resolution spectral element model is used in conjunction with linear analytical theory, weakly nonlinear resonance analysis and a kinematic model in order to map out the barriers, manifolds, resonance layers and other objects that provide a template for chaotic stirring. As expected, chaos arises when a radially symmetric background state is perturbed by a symmetry-breaking disturbance. In the background state, each trajectory lives on a torus and some of the latter survive the perturbation and act as barriers to chaotic transport, a result consistent with an extension of the KAM theorem for three-dimensional, volume-preserving flow. For shallow eddies, where E is O(1), the flow is dominated by thin resonant layers sandwiched between KAM-type barriers, and the stirring rate is weak. On the other hand, eddies with moderately small E experience thicker resonant layers, wider-spread chaos and much more rapid stirring. This trend reverses for sufficiently small E, corresponding to deep eddies, where the vertical rigidity imposed by strong rotation limits the stirring. The bulk stirring rate, estimated from a passive tracer release, confirms the non-monotonic variation in stirring rate with E. This result is shown to be consistent with linear Ekman layer theory in conjunction with a resonant width calculation and the Taylor–Proudman theorem. The theory is able to roughly predict the value of E at which stirring is maximum. For large disturbances, the stirring rate becomes monotonic over the range of Ekman numbers explored. We also explore variation in the eddy aspect ratio.
    Description: L.J.P., I.I.R., T.M.O. and P.W. have been supported on DOD (MURI) grant N000141110087, administered by the Office of Naval Research. I.I.R. and L.J.P. received additional support from Grant NSF-OCE-0725796 from the National Science Foundation.
    Description: 2014-12-05
    Keywords: Chaotic advection ; Geophysical and geological flows ; Ocean processes
    Repository Name: Woods Hole Open Access Server
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  • 9
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    Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis (2014)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 5 (2014): 4342, doi:10.1038/ncomms5342.
    Description: Three-dimensional (3D) bioimaging, visualization and data analysis are in strong need of powerful 3D exploration techniques. We develop virtual finger (VF) to generate 3D curves, points and regions-of-interest in the 3D space of a volumetric image with a single finger operation, such as a computer mouse stroke, or click or zoom from the 2D-projection plane of an image as visualized with a computer. VF provides efficient methods for acquisition, visualization and analysis of 3D images for roundworm, fruitfly, dragonfly, mouse, rat and human. Specifically, VF enables instant 3D optical zoom-in imaging, 3D free-form optical microsurgery, and 3D visualization and annotation of terabytes of whole-brain image volumes. VF also leads to orders of magnitude better efficiency of automated 3D reconstruction of neurons and similar biostructures over our previous systems. We use VF to generate from images of 1,107 Drosophila GAL4 lines a projectome of a Drosophila brain.
    Description: This work was mainly supported by Howard Hughes Medical Institute. H.P. is currently supported by the Allen Institute for Brain Science. R.W.T. and A.M. were supported by a grant MH071739 (MERIT).
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  • 10
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    Distribution of surface plastic debris in the eastern Pacific Ocean from an 11-Year data set (2014)
    American Chemical Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Chemical Society, 2014. This article is posted here by permission of American Chemical Society for personal use, not for redistribution. The definitive version was published in Environmental Science and Technology 38 (2014): 4732–4738, doi:10.1021/es4053076.
    Description: We present an extensive survey of floating plastic debris in the eastern North and South Pacific Oceans from more than 2500 plankton net tows conducted between 2001 and 2012. From these data we defined an accumulation zone (25 to 41°N, 130 to 180°W) in the North Pacific subtropical gyre that closely corresponds to centers of accumulation resulting from the convergence of ocean surface currents predicted by several oceanographic numerical models. Maximum plastic concentrations from individual surface net tows exceeded 106 pieces km–2, with concentrations decreasing with increasing distance from the predicted center of accumulation. Outside the North Pacific subtropical gyre the median plastic concentration was 0 pieces km–2. We were unable to detect a robust temporal trend in the data set, perhaps because of confounded spatial and temporal variability. Large spatiotemporal variability in plastic concentration causes order of magnitude differences in summary statistics calculated over short time periods or in limited geographic areas. Utilizing all available plankton net data collected in the eastern Pacific Ocean (17.4°S to 61.0°N; 85.0 to 180.0°W) since 1999, we estimated a minimum of 21 290 t of floating microplastic.
    Description: This work was supported by Sea Education Association, NFWF-NOAA Marine Debris Program (Nos. 2009-0062-002, NA10OAR4320148, Amend. 71), and NSF (Nos. OCE-0087528, OCE-1155379, OCE-1260403, OCE-1352422).
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