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  • Nitrification  (3)
  • General Chemistry
  • Inter-Research  (3)
  • 2010-2014  (3)
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  • 1
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2005. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 299 (2005): 123-135, doi:10.3354/meps299123.
    Description: Measurements of N losses by denitrification from saltmarsh sediments have proved difficult because of the importance of plant metabolism and tidal cycles to sediment N cycling. In vitro approaches often do not measure the dominant coupled nitrification–denitrification pathway and/or alter in situ plant growth and redox conditions. We developed an in situ 15NH4+ tracer approach to measure coupled nitrification–denitrification fluxes in an undisturbed New England Spartina alterniflora saltmarsh. The tracer was line-injected into sediments underlying natural S. alterniflora stands and in similar areas receiving long-term N amendment (up to 11.2 mol organic N m–2 yr–1 for 16 to 23 yr), and 15N retention and loss routes were followed for 1 to 5 d. Denitrification losses in unfertilized grass stands ranged from 0.4 to 11.9 mmol N m–2 d–1 (0.77 ± 0.18 mol N m–2 yr–1). Denitrification in unfertilized sediments remained low until late summer, but underwent a ca. 4-fold increase in August and September, although sediment temperatures and respiration rates were high throughout the summer. Plant N uptake may limit the availability of N to support denitrification during the early summer, and denitrification may be released from competition with plant uptake in late summer, when plant growth slows. Denitrification rates in fertilized areas ranged from 22 to 77 mmol N m–2 d–1 (10.5 ± 4.9 mol N m–2 yr–1), and denitrification was likely controlled by the availability of fertilizer N rather than by competition with plants, since N was added in excess of plant demand. Our results emphasize the importance of in situ measurements of denitrification in understanding the dynamics of saltmarsh N cycling.
    Description: This project was supported by funding from the Coastal Systems Program of the School for Marine Science and Technology, University of Massachusetts, and by the Education Department and the Reinhart Coastal Research Center of the Woods Hole Oceanographic Institution.
    Keywords: Saltmarsh ; Denitrification ; Nitrification ; N-15 ; Spartina alterniflora
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2013. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 492 (2013): 1-8, doi:10.3354/meps10526.
    Description: Increasing atmospheric CO2 concentrations are causing decreased pH over vast expanses of the ocean. This decreasing pH may alter biogeochemical cycling of carbon and nitrogen via the microbial process of nitrification, a key process that couples these cycles in the ocean, but which is often sensitive to acidic conditions. Recent reports have indicated a decrease in oceanic nitrification rates under experimentally lowered pH. How the composition and abundance of ammonia-oxidizing bacteria (AOB) and archaea (AOA) assemblages respond to decreasing oceanic pH is unknown. We sampled microbes from 2 different acidification experiments and used a combination of qPCR and functional gene microarrays for the ammonia monooxygenase gene (amoA) to assess how acidification alters the structure of ammonia oxidizer assemblages. We show that despite widely different experimental conditions, acidification consistently altered the community composition of AOB by increasing the relative abundance of taxa related to the Nitrosomonas ureae clade. In one experiment, this increase was sufficient to cause an increase in the overall abundance of AOB. There were no systematic shifts in the community structure or abundance of AOA in either experiment. These different responses to acidification underscore the important role of microbial community structure in the resiliency of marine ecosystems.
    Description: NSF funding to B.B.W. supported the barrel experiments. Funding for the coral experiments came from NSF (GRF to M.H.; OCE-1041106), the Woods Hole Oceanographic Institution’s Ocean Life Institute, and the International Society for Reef Studies.
    Keywords: Ocean acidification ; Ammonia-oxidizing archaea ; Ammonia-oxidizing bacteria ; Nitrification
    Repository Name: Woods Hole Open Access Server
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  • 3
    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2009. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 55 (2009): 189-201, doi:10.3354/ame01294.
    Description: Pelagic archaeal phylogenetic diversity and the potential for crenarchaeotal nitrification of Group 1.1a were determined in the rivers Rhine and Têt by 16S rRNA sequencing, catalyzed reported deposition-fluorescence in situ hybridization (CARD–FISH) and quantification of 16S rRNA and functional genes. Euryarchaeota were, for the first time, detected in temperate river water even though a net predominance of crenarchaeotal phylotypes was found. Differences in phylogenic distribution were observed between rivers and seasons. Our data suggest that a few archaeal phylotypes (Euryarchaeota Groups RC-V and LDS, Crenarchaeota Group 1.1a) are widely distributed in pelagic riverine environments whilst others (Euryarchaeota Cluster Sagma-1) may only occur seasonally in river water. Crenarchaeota Group 1.1a has recently been identified as a major nitrifier in the marine environment and phylotypes of this group were also present in both rivers, where they represented 0.3% of the total pelagic microbial community. Interestingly, a generally higher abundance of Crenarchaeota Group 1.1a was found in the Rhine than in the Têt, and crenarchaeotal ammonia monooxygenase gene (amoA) was also detected in the Rhine, with higher amoA copy numbers measured in February than in September. This suggests that some of the Crenarchaeota present in river waters have the ability to oxidize ammonia and that riverine crenarchaeotal nitrification of Group 1.1a may vary seasonally.
    Description: The present study is part of the Land–Ocean Interactions in the Coastal Zone (LOICZ) project supported by the Research Council for Earth and Life Science (ALW), with financial aid from the Netherlands Organisation for Scientific Research (NWO) (grant no. 014.27.003 to J.S.S.D.).
    Keywords: Archaea ; River ; Diversity ; Nitrification
    Repository Name: Woods Hole Open Access Server
    Type: Article
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