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  • Chemistry  (3)
  • Corals  (3)
  • Humans
  • Inorganic Chemistry
  • Massachusetts Institute of Technology and Woods Hole Oceanographic Institution  (6)
  • 2015-2019  (6)
  • 1990-1994
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  • 1
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Applied Ocean Science & Engineering at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February 2019.
    Description: Under global climate change, our oceans are warming at an unprecedented rate. Increased temperatures represent a severe source of stress for many marine organisms. This thesis aims to understand how corals and anemones respond to changing temperatures across different timescales and investigates mechanisms that can facilitate persistence in light of environmental change, from selection and adaptation across generations to phenotypic plasticity within a single individual’s lifespan. In this context, I explore three case studies of thermal stress in corals and anemones. I begin with massive Porites lobata corals from the central Pacific. Here, reefs that are most affected by El Niño, such as Jarvis and the northeast Phoenix Islands maintain genetic diversity indicating recruitment from nearby reefs may occur. Yet, they show significant genetic differentiation (FST) from farther areas, suggesting this dispersal may be limited. Thermal variability in this region may also favor plasticity over adaptation, as we do not find differences in bleaching histories among genetic groups. Next, I investigate genetic connectivity and adaptation to chronically elevated temperatures across a natural temperature gradient within the Palauan archipelago. Combining genetic data and historical growth measurements from coral cores, I find that Palau’s warmest reefs harbor unique genetic subpopulations of Porites lobata and find evidence for a genetic basis of their higher thermal tolerance. Lastly, I explore if parents can modulate parental effects to increase the thermal tolerance of their offspring over short time scales, using the estuarine anemone Nematostella vectensis. Indeed, I find parents exposed to increased temperatures quickly produce more thermally tolerant larvae. In fact, offspring from these Massachusetts parents show thermal thresholds that are indistinguishable from more southern populations. This thesis highlights the ability and potential of corals and anemones to persist under variable conditions over different timescales. Nevertheless, a compelling effort to reduce rates of warming worldwide will be imperative to the survival and integrity of key marine ecosystems such as coral reefs.
    Description: Funding for this research came from the National Science Foundation (Awards OCE-1537338, OCE-1605365, OCE-1220529, and OCE-1031971), the Link Foundation, Bermuda Institute of Ocean Sciences Grants-in-Aid, the Tiffany & Co. Foundation, the Nature Conservancy, the Dalio Foundation, Inc., through the Dalio Explore Fund, and Ray Dalio through the WHOI Access to the Sea Fund, all to Anne Cohen; and a Gordon and Betty Moore Foundation grant (#4033) to Ann Tarrant. Funding to H. Rivera was provided by the Charles M. Vest Presidential Fellowship, the National Defense Science and Engineering Graduate Fellowship, American Association for University Women’s American Dissertation Fellowship, MIT’s Martin Family Foundation Fellowship, the Gates Millennium Scholars Program, WHOI’s Coastal Ocean Institute Grants, WHOI’s Grassler Family Foundation Grants, WHOI’s Ocean Ventures Fund, the MIT-BIOS Fund, and the MIT-WHOI Academic Programs Office.
    Keywords: Global warming ; Corals ; Anemones ; Marine organisms ; Thermal stresses ; Marine ecology
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 2
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution September 2018
    Description: Many chemical constituents are removed from the ocean by attachment to settling particles, a process referred to as “scavenging.” Radioisotopes of thorium, a highly particle-reactive element, have been used extensively to study scavenging in the ocean. However, this process is complicated by the highly variable chemical composition and concentration of particles in oceanic waters. This thesis focuses on understanding the cycling of thorium as affected by particle concentration and particle composition in the North Atlantic. This objective is addressed using (i) the distributions 228,230,234Th, their radioactive parents, particle composition, and bulk particle concentration, as measured or estimated along the GEOTRACES North Atlantic Transect (GA03) and (ii) a model for the reversible exchange of thorium with particles. Model parameters are either estimated by inversion (chapter 2-4), or prescribed in order to simulate 230Th in a circulation model (chapter 5). The major findings of this thesis follow. In chapters 2 and 3, I find that the rate parameters of the reversible exchange model show systematic variations along GA03. In particular, 𝑘1, the apparent first-order rate "constant" of Th adsorption onto particles, generally presents maxima in the mesopelagic zone and minima below. A positive correlation between 𝑘1 and bulk particle concentration is found, consistent with the notion that the specific rate at which a metal in solution attaches to particles increases with the number of surface sites available for adsorption. In chapter 4, I show that Mn (oxyhydr)oxides and biogenic particles most strongly influence 𝑘1 west of the Mauritanian upwelling, but that biogenic particles dominate 𝑘1 in this region. In chapter 5, I find that dissolved 230Th data are best represented by a model that assumes enhanced values of 𝑘1 near the seafloor. Collectively, my findings suggest that spatial variations in Th radioisotope activities observed in the North Atlantic reflect at least partly variations in the rate at which Th is removed from the water column.
    Description: This work was supported by the US National Science Foundation. Two US NSF grants have supported the research in this thesis (OCE-1232578 and OCE-155644).
    Keywords: Thorium ; Chemistry
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 3
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution June 2017
    Description: This thesis documents the origin, distribution, and fate of methane and several of its isotopic forms on Earth. Using observational, experimental, and theoretical approaches, I illustrate how the relative abundances of 12CH4, 13CH4, 12CH3D, and 13CH3D record the formation, transport, and breakdown of methane in selected settings. Chapter 2 reports precise determinations of 13CH3D, a “clumped” isotopologue of methane, in samples collected from various settings representing many of the major sources and reservoirs of methane on Earth. The results show that the information encoded by the abundance of 13CH3D enables differentiation of methane generated by microbial, thermogenic, and abiogenic processes. A strong correlation between clumped- and hydrogen-isotope signatures in microbial methane is identified and quantitatively linked to the availability of H2 and the reversibility of microbially-mediated methanogenesis in the environment. Determination of 13CH3D in combination with hydrogen-isotope ratios of methane and water provides a sensitive indicator of the extent of C–H bond equilibration, enables fingerprinting of methane-generating mechanisms, and in some cases, supplies direct constraints for locating the waters from which migrated gases were sourced. Chapter 3 applies this concept to constrain the origin of methane in hydrothermal fluids from sediment-poor vent fields hosted in mafic and ultramafic rocks on slow- and ultraslow-spreading mid-ocean ridges. The data support a hypogene model whereby methane forms abiotically within plutonic rocks of the oceanic crust at temperatures above ca. 300 C during respeciation of magmatic volatiles, and is subsequently extracted during active, convective hydrothermal circulation. Chapter 4 presents the results of culture experiments in which methane is oxidized in the presence of O2 by the bacterium Methylococcus capsulatus strain Bath. The results show that the clumped isotopologue abundances of partially-oxidized methane can be predicted from knowledge of 13C/12C and D/H isotope fractionation factors alone.
    Description: The research activities documented in this thesis were made possible by grants to my advisor from the U.S. National Science Foundation (NSF award EAR-1250394), the National Aeronautics and Space Administration (NASA) Astrobiology Institute (NAI, University of Colorado, Boulder, CAN 7 under Cooperative Agreement NNA15BB02A), the Department of Energy (DOE, Small Business Innovation Research program, contract DE-SC0004575), the Alfred P. Sloan Foundation via the Deep Carbon Observatory, and a Shell Graduate Fellowship through the MIT Energy Initiative. I completed the bulk of the work in this thesis while being supported by a National Defense Science and Engineering Graduate (NDSEG) Fellowship awarded through the Office of Naval Research of the U.S. Department of Defense. The StanleyW.Watson Fellowship Fund provided support during my first summer term at WHOI.The Charles M. Vest Presidential Fellowship at MIT supported me in the first year of my Ph.D. studies. I received additional support that year through NSF award EAR-1159318 (to S. Ono and T. Bosak) and theWalter & Adel Hohenstein Graduate Fellowship of Phi Kappa Phi. The MIT Earth Resources Laboratory and PAOC Houghton Fund funded my attendance at several conferences.
    Keywords: Methane ; Chemistry ; Isotopes ; Oxidation
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 4
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-26
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February 2017
    Description: Salt marshes are physically, chemically, and biologically dynamic environments found globally at temperate latitudes. Tidal creeks and marshtop ponds may expand at the expense of productive grass-covered marsh platform. It is therefore important to understand the present magnitude and drivers of production and respiration in these submerged environments in order to evaluate the future role of salt marshes as a carbon sink. This thesis describes new methods to apply the triple oxygen isotope tracer of photosynthetic production in a salt marsh. Additionally, noble gases are applied to constrain air-water exchange processes which affect metabolism tracers. These stable, natural abundance tracers complement traditional techniques for measuring metabolism. In particular, they highlight the potential importance of daytime oxygen sinks besides aerobic respiration, such as rising bubbles. In tidal creeks, increasing nutrients may increase both production and respiration, without any apparent change in the net metabolism. In ponds, daytime production and respiration are also tightly coupled, but there is high background respiration regardless of changes in daytime production. Both tidal creeks and ponds have higher respiration rates and lower production rates than the marsh platform, suggesting that expansion of these submerged environments could limit the ability of salt marshes to sequester carbon.
    Description: Financial support for my doctoral research was provided by the United States Department of Defense through the National Defense Science and Engineering Graduate Fellowship Program, the National Science Foundation under grant OCE-1233678, and the Woods Hole Oceanographic Institution (WHOI) under grants from the WHOI Coastal Ocean Institute, Ocean and Climate Change Institute, and Ocean Life Institute. WHOI Academic Programs Office also provided funding support for research, through the Ocean Ventures Fund, and for my stipend, as graduate research assistantships including an assistantship from the United States Geological Survey administered by WHOI.
    Keywords: Marshes ; Chemistry ; Metabolism ; Knorr (Ship : 1970-) Cruise KN210-04
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 5
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-26
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February 2017
    Description: Coral reefs are biodiverse ecosystems that are at risk of degradation as a result of environmental changes. Reefs are constantly in a state of flux: the resident species assemblages vary considerably in space and time. However, the drivers of this variability are poorly understood. Tracking these changes and studying how coral reefs respond to natural and anthropogenic disturbance can be challenging and costly, particularly for reefs that are located in remote areas. Because many reef animals produce and use sound, recording the ambient soundscape of a reef might be one way to efficiently study these habitats from afar. In this thesis, I develop and apply a suite of acoustics-based tools to characterize the biological and anthropogenic acoustic activity that largely comprises marine soundscapes. First, I investigate links between reef fauna and reef-specific acoustic signatures on coral reefs located in the U.S. Virgin Islands. Second, I compare those findings to a more expansive study that I conducted in Maui, Hawaii, in which the drivers of bioacoustic differences among reefs are explored. Third, I investigate the distances over which sounds of biological origin may travel away from the reef and consider the range within which these acoustic cues might be usable by pelagic larvae in search of a suitable adult habitat. Fourth, I assess the extent to which the presence of vessel noise in shallow-water habitats changes the ambient soundscape. Finally, I present the results of a modeling exercise that questions how ocean noise levels might change over the next two decades as a result of major projected increases in the number and size of and distance traveled by commercial ships. The acoustics-based tools presented here help provide insight into ecosystem function and the extent of human activity in a given habitat. Additionally, these tools can be used to inform an effective regulatory regime to improve coral reef ecosystem management.
    Description: Supported by the BP-MIT Energy Fellowship, the MIT Martin Family Fellowship, NSF grant OCE-1536728, NSF Ocean Acidification grant 1220034, Office of Naval Research award number N000141110612 and the WHOI Academic Programs Office. My research was funded by the Mitsubishi Corporation Foundation for the Americas, the PADI Foundation, the WHOI Access To The Sea Fund, the WHOI Coastal Ocean Institute, the WHOI Independent Study awards, the WHOI Ocean Life Institute, and the WHOI Ocean Ventures Fund.
    Keywords: Ecosystem ; Corals ; Reefs ; Sound
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 6
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February 2017
    Description: Scleractinian corals extract calcium (Ca2+) and carbonate (CO2−3) ions from seawater to construct their calcium carbonate (CaCO3) skeletons. Key to the coral biomineralization process is the active elevation of the CO2−3 concentration of the calcifying fluid to achieve rapid nucleation and growth of CaCO3 crystals. Coral skeletons contain valuable records of past climate variability and contribute to the formation of coral reefs. However, limitations in our understanding of coral biomineralization hinder the accuracy of (1) coral-based reconstructions of past climate, and (2) predictions of coral reef futures as anthropogenic CO2 emissions drive declines in seawater CO2−3 concentration. In this thesis, I investigate the mechanism of coral biomineralization and evaluate the sensitivity of coral reef CaCO3 production to seawater carbonate chemistry. First, I conducted abiogenic CaCO3 precipitation experiments that identified the U/Ca ratio as a proxy for fluid CO2−3 concentration. Based on these experimental results, I developed a quantitative coral biomineralization model that predicts temperature can be reconstructed from coral skeletons by combining Sr/Ca - which is sensitive to both temperature and CO2−3 - with U/Ca into a new proxy called “Sr-U”. I tested this prediction with 14 corals from the Pacific Ocean and the Red Sea spanning mean annual temperatures of 25.7-30.1°C and found that Sr-U has uncertainty of only 0.5°C, twice as accurate as conventional coral-based thermometers. Second, I investigated the processes that differentiate reef-water and open-ocean carbonate chemistry, and the sensitivity of ecosystem-scale calcification to these changes. On Dongsha Atoll in the northern South China Sea, metabolic activity of resident organisms elevates reef-water CO2−3 twice as high as the surrounding open ocean, driving rates of ecosystem calcification higher than any other coral reef studied to date. When high temperatures stressed the resident coral community, metabolic activity slowed, with dramatic effects on reef-water chemistry and ecosystem calcification. Overall, my thesis highlights how the modulation of CO2−3, by benthic communities on the reef and individual coral polyps in the colony, controls the sensitivity of coral reefs to future ocean acidification and influences the climate records contained in the skeleton.
    Description: This research was funded by a National Science Foundation (NSF) Graduate Research Fellowship, NSF grants OCE 1041106, OCE 1338320, and OCE 1220529, by a thematic project at Academia Sinica, Taiwan, the WHOI Ocean Ventures Fund, and by the WHOI Coastal Ocean Institute.
    Keywords: Corals ; Coral reef ecology
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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