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  • Articles  (355)
  • GFZ Data Services  (243)
  • Naturalis Biodiversity Center  (112)
  • 2020-2024  (355)
  • 1
    Publication Date: 2024-04-19
    Description: The focus of this paper is the North American species of Cortinarius in subg. Leprocybe. Eighteen species, including twelve new ones, and two tentative (aff.) species, are delimited based on morphological and molecular data (DNA ITS-LSU sequences). Existing type specimens of species in subg. Leprocybe were also studied, and neo- or epitypes designated for C. cotoneus, C. melanotus, C. phrygianus and C. venetus to stabilize the nomenclature. In addition, to improve the infrasubgeneric classification of Leprocybe three new sections are proposed: sect. Fuscotomentosi, sect. Melanoti and sect. Squamiveneti. This study adds substantial information to the knowledge of subg. Leprocybe in North America against a background of European species. To date only two species, C. phrygianus and C. squamivenetus have been reported from both continents.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Agaricales ; barcodes ; Cortinariaceae ; ectomycorrhiza ; Europe ; ITS ; North America
    Repository Name: National Museum of Natural History, Netherlands
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  • 2
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    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 163-176
    Publication Date: 2024-05-07
    Description: The genus Calonectria includes many important plant pathogens with a wide global distribution. In order to better understand the reproductive biology of these fungi, we characterised the structure of the mating type locus and flanking genes using the genome sequences for seven Calonectria species. Primers to amplify the mating type genes in other species were also developed. PCR amplification of the mating type genes and multi-gene phylogenetic analyses were used to investigate the mating strategies and evolution of mating type in a collection of 70 Calonectria species residing in 10 Calonectria species complexes. Results showed that the organisation of the MAT locus and flanking genes is conserved. In heterothallic species, a novel MAT gene, MAT1-2-12 was identified in the MAT1-2 idiomorph; the MAT1-1 idiomorph, in most cases, contained the MAT1-1-3 gene. Neither MAT1-1-3 nor MAT1-2-12 was found in homothallic Calonectria (Ca.) hongkongensis, Ca. lateralis, Ca. pseudoturangicola and Ca. turangicola. Four different homothallic MAT locus gene arrangements were observed. Ancestral state reconstruction analysis provided evidence that the homothallic state was basal in Calonectria and this evolved from a heterothallic ancestor.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Cylindrocladium ; fungal biology ; fungal pathogens ; MAT locus ; mating type ; phylogeny ; sexual reproduction
    Repository Name: National Museum of Natural History, Netherlands
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  • 3
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    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 68 no. 2, pp. 73-84
    Publication Date: 2024-05-06
    Description: Detailed morphological and molecular research has led to the conclusion that the majority of the species of the genus Brachiaria have to move to the much smaller genus Urochloa. Although many of the necessary new combinations were made, in Africa a fair number of accepted species still do not yet have a name within Urochloa. Following work on WestAfrica, CentralAfrica and Madagascar, this paper now provides these new combinations for the remaining sub-SaharanAfrican species, as well as a full synonymy for all EastAfrican ones, including typification. In total, the paper deals with 40 species, for 12 of these new combinations are created, while 55 lectotypes and one neotype of both accepted names and synonyms are designated.
    Keywords: Africa ; grasses ; nomenclature ; Paniceae ; taxonomy ; typification
    Repository Name: National Museum of Natural History, Netherlands
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  • 4
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    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 132-162
    Publication Date: 2024-05-06
    Description: Species of Diaporthe (syn. Phomopsis) are important endophytes, saprobes and pathogens, infecting a wide range of plants and resulting in important crop diseases. However, the species occurring on pear remain largely unresolved. In this study, a total of 453 Diaporthe isolates were obtained from branches of Pyrus plants (including P. bretschneideri, P. communis, P. pyrifolia and P. ussuriensis collected from 12 provinces in China) showing shoot canker symptoms. Phylogenetic analyses based on five loci (ITS, TEF, CAL, HIS, and TUB) coupled with morphology of 113 representative isolates revealed that 19 Diaporthe species were isolated, representing 13 known species (including D. caryae, D. cercidis, D. citrichinensis, D. eres, D. fusicola, D. ganjae, D. hongkongensis, D. padina, D. pescicola, D. sojae, D. taoicola, D. unshiuensis and D. velutina) and six new species described here as D. acuta, D. chongqingensis, D. fulvicolor, D. parvae, D. spinosa and D. zaobaisu. Although Koch’s postulates confirmed all species to be pathogenic, a high degree of variation in aggressiveness was observed. Moreover, these species have a high diversity, plasticity, and prevalence related to the geographical location and pear species involved.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; multi-gene phylogeny ; pathogenicity ; Pyrus ; six new taxa ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
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  • 5
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    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 66 no. 3, pp. vii-ix
    Publication Date: 2024-05-05
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics
    Repository Name: National Museum of Natural History, Netherlands
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  • 6
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    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 66 no. 3, pp. i-vi
    Publication Date: 2024-05-05
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics
    Repository Name: National Museum of Natural History, Netherlands
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  • 7
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    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 66 no. 3, pp. 227-235
    Publication Date: 2024-05-05
    Description: The riparian forest is one of the most diverse environments of the La Plata River plains. It is represented by patches of humid forests, which are a valuable source of ecosystem services and have recreational and educational potential. However, the riparian forest has undergone constant modification, worsened by private real-estate developments and a lack of government regulation. Among the reserves that protect the riparian forest, the Municipal Ecological Reserve of Avellaneda is the closest to the southern limit of the Autonomous City of Buenos Aires. Although there are around 300 species of wild fauna and flora informally registered in the area, there are only a few studies published about its biodiversity. In this work, the diversity of thirteen native and exotic ferns in the core area (Eco Área) of the reserve is characterized, the origin of the species is also evaluated and comparisons are made with other nearby protected areas. The Eco Área of the Reserve plays an important role as part of the urban reserve corridor of the La Plata River plains and constitutes a refuge for both native and exotic ruderal species. The present work represents the basis for future studies about the population dynamics and the colonization strategies of the ferns.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Buenos Aires ; diversity ; ferns ; protected areas ; riparian forest ; ruderal
    Repository Name: National Museum of Natural History, Netherlands
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  • 8
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    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 66 no. 3, pp. 263-274
    Publication Date: 2024-05-05
    Description: One of the objects of the Municipal Museum Zierikzee (Province of Zealand, The Netherlands) is a historical herbarium referred to by the name the ‘Zierikzee Herbarium’. The characteristics of the specimens in the Zierikzee Herbarium are so similar to those in a herbarium at Naturalis Biodiversity Center, Leiden (L), that both must originate from the same place and time. About the latter herbarium little is known, except that it was once owned by the army-surgeon Simon(e) d’Oignies (1740–1782). The Zierikzee Herbarium was recently described and analysed in detail by Offerhaus et al. (2021). It is hypothesised that the Zierikzee Herbarium is part of a herbarium made by Professor Martinus Wilhelmus Schwencke (1707–1785) and was used during his lectures for future pharmacists in his botanical garden in The Hague in the 1750s, and auctioned in Leiden in 1785. The presence in the Zierikzee Herbarium of a virtually complete set of medicinal plants mentioned in the ‘Pharmacopoea Hagana’ (Anonymous 1738) eventually led to the conclusion that these could not have been assembled before 1730. Based on the printed ornaments that are used to mount the plants in these, and the major Dutch herbaria of the 18th century, I argue that the plants in the Zierikzee Herbarium and the herbarium of D’Oignies were remounted at a later date. The hypothesis by Offerhaus et al. (2021: 12) that the Zierikzee Herbarium was started between 1710 and 1720 is rejected. Arguments are given why it is unlikely that the Zierikzee Herbarium, as is suggested by Offerhaus et al. (2021: 12), is the herbarium of the head gardener of the Leiden botanic garden, Jacob Ligtvoet (1684–1752) and was auctioned in 1752.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; 18th century Dutch herbaria ; Jacob Ligtvoet ; Pharmacopoea Hagana ; printed herbarium ornaments ; Martinus Wilhelmus Schwencke
    Repository Name: National Museum of Natural History, Netherlands
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  • 9
    Publication Date: 2024-05-08
    Description: Novel species of fungi described in this study include those from various countries as follows: Antarctica, Cladosporium arenosum from marine sediment sand. Argentina, Kosmimatamyces alatophylus (incl. Kosmimatamyces gen. nov.) from soil. Australia, Aspergillus banksianus, Aspergillus kumbius, Aspergillus luteorubrus, Aspergillus malvicolor and Aspergillus nanangensis from soil, Erysiphe medicaginis from leaves of Medicago polymorpha, Hymenotorrendiella communis on leaf litter of Eucalyptus bicostata, Lactifluus albopicri and Lactifluus austropiperatus on soil, Macalpinomyces collinsiae on Eriachne benthamii, Marasmius vagus on soil, Microdochium dawsoniorum from leaves of Sporobolus natalensis, Neopestalotiopsis nebuloides from leaves of Sporobolus elongatus, Pestalotiopsis etonensis from leaves of Sporobolus jacquemontii, Phytophthora personensis from soil associated with dying Grevillea mccutcheonii. Brazil, Aspergillus oxumiae from soil, Calvatia baixaverdensis on soil, Geastrum calycicoriaceum on leaf litter, Greeneria kielmeyerae on leaf spots of Kielmeyera coriacea. Chile, Phytophthora aysenensis on collar rot and stem of Aristotelia chilensis. Croatia, Mollisia gibbospora on fallen branch of Fagus sylvatica. Czech Republic, Neosetophoma hnaniceana from Buxus sempervirens. Ecuador, Exophiala frigidotolerans from soil. Estonia, Elaphomyces bucholtzii in soil. France, Venturia paralias from leaves of Euphorbia paralias. India, Cortinarius balteatoindicus and Cortinarius ulkhagarhiensis on leaf litter. Indonesia, Hymenotorrendiella indonesiana on Eucalyptus urophylla leaf litter. Italy, Penicillium taurinense from indoor chestnut mill. Malaysia, Hemileucoglossum kelabitense on soil, Satchmopsis pini on dead needles of Pinus tecunumanii. Poland, Lecanicillium praecognitum on insects’ frass. Portugal, Neodevriesia aestuarina from saline water. Republic of Korea, Gongronella namwonensis from freshwater. Russia, Candida pellucida from Exomias pellucidus, Heterocephalacria septentrionalis as endophyte from Cladonia rangiferina, Vishniacozyma phoenicis from dates fruit, Volvariella paludosa from swamp. Slovenia, Mallocybe crassivelata on soil. South Africa, Beltraniella podocarpi, Hamatocanthoscypha podocarpi, Coleophoma podocarpi and Nothoseiridium podocarpi (incl. Nothoseiridium gen. nov.) from leaves of Podocarpus latifolius, Gyrothrix encephalarti from leaves of Encephalartos sp., Paraphyton cutaneum from skin of human patient, Phacidiella alsophilae from leaves of Alsophila capensis, and Satchmopsis metrosideri on leaf litter of Metrosideros excelsa. Spain, Cladophialophora cabanerensis from soil, Cortinarius paezii on soil, Cylindrium magnoliae from leaves of Magnolia grandiflora, Trichophoma cylindrospora (incl. Trichophoma gen. nov.) from plant debris, Tuber alcaracense in calcareus soil, Tuber buendiae in calcareus soil. Thailand, Annulohypoxylon spougei on corticated wood, Poaceascoma filiforme from leaves of unknown Poaceae. UK, Dendrostoma luteum on branch lesions of Castanea sativa, Ypsilina buttingtonensis from heartwood of Quercus sp. Ukraine, Myrmecridium phragmiticola from leaves of Phragmites australis. USA, Absidia pararepens from air, Juncomyces californiensis (incl. Juncomyces gen. nov.) from leaves of Juncus effusus, Montagnula cylindrospora from a human skin sample, Muriphila oklahomaensis (incl. Muriphila gen. nov.) on outside wall of alcohol distillery, Neofabraea eucalyptorum from leaves of Eucalyptus macrandra, Diabolocovidia claustri (incl. Diabolocovidia gen. nov.) from leaves of Serenoa repens, Paecilomyces penicilliformis from air, Pseudopezicula betulae from leaves of leaf spots of Populus tremuloides. Vietnam, Diaporthe durionigena on branches of Durio zibethinus and Roridomyces pseudoirritans on rotten wood. Morphological and culture characteristics are supported by DNA barcodes.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; ITS nrDNA barcodes ; LSU ; new taxa ; systematics
    Repository Name: National Museum of Natural History, Netherlands
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  • 10
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    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 177-195
    Publication Date: 2024-05-08
    Description: The red turpentine beetle (RTB; Dendroctonus valens) is a bark beetle that is native to Central and North America. This insect is well-known to live in association with a large number of Ophiostomatalean fungi. The beetle is considered a minor pest in its native range, but has killed millions of indigenous pine trees in China after its appearance in that country in the late 1990s. In order to increase the base of knowledge regarding the RTB and its symbionts, surveys of the beetle’s fungal associates were initially undertaken in China, and in a subsequent study in its native range in NorthAmerica.Atotal of 30 Ophiostomatalean species that included several undescribed taxa, were identified in these surveys. In the present study, seven of the undescribed taxa collected during the surveys were further characterised based on their morphological characteristics and multi-gene phylogenies. We proceeded to describe five of these as novel Leptographium spp. and two as new species of Ophiostoma. Four of the Leptographium spp. resided in the G. galeiformis-species complex, while one formed part of the L. olivaceumspecies complex. One Ophiostoma sp. was a member of the O. ips-species complex, while the only new species from China was closely related to O. floccosum. Two of the previously undescribed taxa from North America were shown to be congeneric with L. terebrantis, implying that this species was most often isolated in association with the RTB in North America. The undescribed taxon from North America was identified as O. ips, and like L. terebrantis, this species was also not recognized during the initial North American survey. Resolving the identities of these taxa provides essential baseline information to better understand the movement of fungal pathogens with this beetle. This then enhances our ability to accurately assess and predict the risks of invasions by these and related fungi.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; invasion biology ; phylogenetics ; Scolytinae ; seven new taxa ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
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