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  • biogeochemistry
  • Springer  (7)
  • National Academy of Sciences  (2)
  • 2020-2023  (2)
  • 1985-1989  (7)
  • 1950-1954
  • 1930-1934
  • 1
    Publication Date: 2022-06-10
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Acker, M., Hogle, S. L., Berube, P. M., Hackl, T., Coe, A., Stepanauskas, R., Chisholm, S. W., & Repeta, D. J. Phosphonate production by marine microbes: exploring new sources and potential function. Proceedings of the National Academy of Sciences of the United States of America, 119(11), (2022): e2113386119, https://doi.org/10.1073/pnas.2113386119.
    Description: Phosphonates are organophosphorus metabolites with a characteristic C-P bond. They are ubiquitous in the marine environment, their degradation broadly supports ecosystem productivity, and they are key components of the marine phosphorus (P) cycle. However, the microbial producers that sustain the large oceanic inventory of phosphonates as well as the physiological and ecological roles of phosphonates are enigmatic. Here, we show that phosphonate synthesis genes are rare but widely distributed among diverse bacteria and archaea, including Prochlorococcus and SAR11, the two major groups of bacteria in the ocean. In addition, we show that Prochlorococcus can allocate over 40% of its total cellular P-quota toward phosphonate production. However, we find no evidence that Prochlorococcus uses phosphonates for surplus P storage, and nearly all producer genomes lack the genes necessary to degrade and assimilate phosphonates. Instead, we postulate that phosphonates are associated with cell-surface glycoproteins, suggesting that phosphonates mediate ecological interactions between the cell and its surrounding environment. Our findings indicate that the oligotrophic surface ocean phosphonate pool is sustained by a relatively small fraction of the bacterioplankton cells allocating a significant portion of their P quotas toward secondary metabolism and away from growth and reproduction.
    Description: This work was supported in part by grants from the NSF (OCE-1153588 and DBI-0424599 to S.W.C.; OCE-1335810 and OIA-1826734 to R.S.; and OCE-1634080 to D.J.R.), the Gordon and Betty Moore Foundation (no. 6000 to D.J.R.), and the Simons Foundation (Life Sciences Project Award IDs 337262 and 647135 to S.W.C.; 510023 to R.S.; and Simons Collaboration on Ocean Processes and Ecology [SCOPE] Award ID 329108 to S.W.C. and D.J.R.).
    Keywords: phosphonate ; Prochlorococcus ; marine ; biogeochemistry ; phosphorus
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lebrato, M., Garbe-Schönberg, D., Müller, M. N., Blanco-Ameijeiras, S., Feely, R. A., Lorenzoni, L., Molinero, J. C., Bremer, K., Jones, D. O. B., Iglesias-Rodriguez, D., Greeley, D., Lamare, M. D., Paulmier, A., Graco, M., Cartes, J., Barcelos E Ramos, J., de Lara, A., Sanchez-Leal, R., Jimenez, P., Paparazzo, F. E., Hartman, S. E., Westernströer, U., Küter, M., Benavides, R., da Silva, A. F., Bell, S., Payne, C., Olafsdottir, S., Robinson, K., Jantunen, L. M., Korablev, A., Webster, R. J., Jones, E. M., Gilg, O., Bailly du Bois, P., Beldowski, J., Ashjian, C., Yahia, N. D., Twining, B., Chen, X. G., Tseng, L. C., Hwang, J. S., Dahms, H. U., & Oschlies, A. Global variability in seawater Mg:Ca and Sr:Ca ratios in the modern ocean. Proceedings of the National Academy of Sciences of the United States of America, 117(36), (2020): 22281-22292, doi:10.1073/pnas.1918943117.
    Description: Seawater Mg:Ca and Sr:Ca ratios are biogeochemical parameters reflecting the Earth–ocean–atmosphere dynamic exchange of elements. The ratios’ dependence on the environment and organisms' biology facilitates their application in marine sciences. Here, we present a measured single-laboratory dataset, combined with previous data, to test the assumption of limited seawater Mg:Ca and Sr:Ca variability across marine environments globally. High variability was found in open-ocean upwelling and polar regions, shelves/neritic and river-influenced areas, where seawater Mg:Ca and Sr:Ca ratios range from ∼4.40 to 6.40 mmol:mol and ∼6.95 to 9.80 mmol:mol, respectively. Open-ocean seawater Mg:Ca is semiconservative (∼4.90 to 5.30 mol:mol), while Sr:Ca is more variable and nonconservative (∼7.70 to 8.80 mmol:mol); both ratios are nonconservative in coastal seas. Further, the Ca, Mg, and Sr elemental fluxes are connected to large total alkalinity deviations from International Association for the Physical Sciences of the Oceans (IAPSO) standard values. Because there is significant modern seawater Mg:Ca and Sr:Ca ratios variability across marine environments we cannot absolutely assume that fossil archives using taxa-specific proxies reflect true global seawater chemistry but rather taxa- and process-specific ecosystem variations, reflecting regional conditions. This variability could reconcile secular seawater Mg:Ca and Sr:Ca ratio reconstructions using different taxa and techniques by assuming an error of 1 to 1.50 mol:mol, and 1 to 1.90 mmol:mol, respectively. The modern ratios’ variability is similar to the reconstructed rise over 20 Ma (Neogene Period), nurturing the question of seminonconservative behavior of Ca, Mg, and Sr over modern Earth geological history with an overlooked environmental effect.
    Description: We thank the researchers, staff, students, and volunteers in all the expeditions around the world for their contributions. One anonymous referee and Bernhard Peucker-Ehenbrink, Woods Hole Oceanographic Institution, contributed significantly to the final version of the manuscript. This study was developed under a grant from the Federal Ministry of Education and Research to D.G.-S. under contract 03F0722A, by the Kiel Cluster of Excellence “The Future Ocean” (D1067/87) to A.O. and M.L., and by the “European project on Ocean Acidification” (European Community’s Seventh Framework Programme FP7/2007-2013, grant agreement 211384) to A.O. and M.L. Additional funding was provided from project DOSMARES CTM2010-21810-C03-02, by the UK Natural Environment Research Council, to the National Oceanography Centre. This is Pacific Marine Environmental Laboratory contribution number 5046.
    Keywords: global ; seawater ; Mg:Ca ; Sr:Ca ; biogeochemistry
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Hydrobiologia 176-177 (1989), S. 331-348 
    ISSN: 1573-5117
    Keywords: acid rain ; sediment-water exchange ; biogeochemistry ; water pollution ; aquatic and terrestrial ecosystem interaction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Wet and dry deposition of acidic substances, which are emitted to the atmosphere by human activities, have been falling on increasingly widespread areas throughout the world in recent decades. As a result, annual precipitation averages less than pH 4.5 over large areas of the Northern Temperate Zone, and not infrequently, individual rainstorms and cloud or fog-water events have pH values less than 3. Concurrently, thousands of lakes and streams in North America and Europe have become so acidified that they no longer support viable populations of fish and other organisms. Acid deposition may affect sediments in lakes and streams in a variety of ways. In particular, the sediment-water exchange of metals, sulfur, nitrogen and phosphorus, microbial processes, growth of periphyton and macrophytes, and benthic invertebrates may be affected. Overall, the effects of acid deposition on lake and stream ecosystems are the result of numerous and complex biogeochemical interactions, including catchment characteristics, flow path and residence time of water, and lake-basin morphometry and acid neutralization capacity of both aquatic and terrestrial (catchment) ecosystems. Suggestions for future research are given.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Hydrobiologia 172 (1989), S. 265-299 
    ISSN: 1573-5117
    Keywords: Antarctic lake ; biogeochemistry ; organic substance ; stratification ; hydrocarbon ; fatty acid ; sterol ; phenolic acid ; hydroxy acid ; ketone
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The features of organic constituents in Antarctic lakes and ponds of the McMurdo, Syowa and Vestfold oases are summarised from a biogeochemical viewpoint. Total organic carbon or dissolved organic carbon contents in saline lakewaters are generally extremely high and much higher than those in freshwater lakes. The concentrations and/or compositions of hydrocarbons, fatty acids, sterols, phenolic acids and hydroxy acids in lake and pond waters and sediments vary markedly, probably reflecting differences in biological activity and source organisms. Long-chain alkenes, such as n-C29:2 (carbon chain length: numbers of unsaturated bonds) are found as the major hydrocarbons in some anoxic lake sediments. Unusually, long-chain n-alkanoic acids are abundant in some Antarctic lake sediments and 24-ethylcholest-5-en-3β-ol is the most prominent sterol in most of the lakes studied. It is suggested that some bacteria, and cyanobacteria and algae are important sources of long-chain n-alkanoic acids and 24-ethylcholest-5-en-3β-ol, respectively, as previously reported from environments of the mid and lower latitudes. The dominance of p-hydroxybenzoic acid among the phenolic acids found together with the absence of syringic, p-coumaric and ferulic acids in the Antarctic lakes reflects the absence of vascular plants in the areas studied. In three Antarctic saline lakes (Vanda, Fryxell and Ace) the kinds and amounts of organic constituents differ with depth due to the zonation of microorganisms. The maximum fatty acid contents are found at depths just above the anoxic layer, corresponding to the photosynthetic maxima in the lakes, and the depths of maximum phytoplankton populations. In the bottom sediments of the lakes, the composition of organic substances is significantly different from that in the water columns, indicating that the sinking organic substances are degraded rapidly by microorganisms on the lake bottom.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Origins of life and evolution of the biospheres 19 (1989), S. 433-433 
    ISSN: 1573-0875
    Keywords: gas-hydrotherms ; chaemosynthesis ; biogeochemistry ; marine invertebrates
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 1573-515X
    Keywords: acid deposition ; forest cover ; forest structure ; biogeochemistry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract The Regional Integrated Lake-Watershed Acidification Study (RILWAS) was conducted to identify and to quantify the environmental factors controlling surface water chemistry in forested watersheds of the Adirondack region of New York. The RILWAS vegetation research was designed to: (1) compare the quantitative patterns of forest cover and tree community structure in the study catchments of the Moose River drainage system; and (2) identify important vegetation differences among study watersheds that might help to explain inter-watershed differences in water chemistry and aquatic responses to acidic deposition. Field transect data indicated that the overall drainage system includes 50% mixed forest cover, 38% hardwood forest, 10% coniferous forest, and 2% wetland cover. Major tree species include yellow birch, red spruce, American beech, sugar maple, eastern hemlock, and red maple. Analysis of forest structure indicated that mean weighted basal area estimates ranged two-fold from 24–48 m2ha−1 among watersheds. Likewise, mean weighted estimates for aboveground biomass and aboveground annual productivity ranged among watersheds from 160 to 320 MT ha−1 and from 8 to 18 MT ha−1 yr−1, respectively. Results showed that differences in surface water chemistry were independent of vegetation differences among watersheds.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Biogeochemistry 2 (1986), S. 101-112 
    ISSN: 1573-515X
    Keywords: biogeochemistry ; ecosystem ; nutrient cycling ; theory ; research needs ; National Science Foundation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract This comment presents current and emerging areas of research which the U.S. National Science Foundation believes have special promise for advancing ecosystem science. These areas are: (1) major element cycle interactions; (2) trace element and organic compound controls on ecosystem dynamics; (3) the role of consumers on ecosystem dynamics; (4) ecosystem dynamics in contrasting environments; (5) landscape ecology; and (6) enhancement of theory and methodology. The Ecosystem Studies Program of the National Science Foundation has identified these as areas to be emphasized in its long range planning program (revised March, 1985). Biogeochemical studies are emphasized in many of these research priority areas.
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1573-515X
    Keywords: toluene ; biogeochemistry ; volatilization ; degradation ; mesocosm experiments
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract The fate of toluene in coastal seawater was investigated in controlled ecosystems using14C- and3H-toluene as tracers. Under winter-like conditions, 80% of the toluene volatilized from the water column in 2 months. Microbial degradation was less important than volatilization and sorption onto particulate matter with resultant loss to the sediments was minor. During summer most of the toluene was degraded by microbes. Nearly 80% of the toluene was converted to CO2 within 1 week and the label remained in the water column as dissolved CO2. The experimental results were applied to estimate the removal rates and the residence time of toluene in adjacent Narragansett Bay, Rhode Island. In winter volatilization would dominate the loss of toluene and a residence time of 6 d would be predicted. However, rapid biodegradation in summer would result in a residence time of 〈 1 d.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Biogeochemistry 1 (1985), S. 277-302 
    ISSN: 1573-515X
    Keywords: Appalachian mountains ; biogeochemistry ; peat ; Sphagnum ; water chemistry ; West Virginia ; wetlands
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract At Big Run Bog, aSphagnum-dominated peatland in the unglaciated Appalachian Plateau of West Virginia, significant spatial variation in the physical and chemical properties of the peat and in surface and subsurface (30 cm deep) water chemistry was characterized. The top 40 cm of organic peat at Big Run Bog had average values for bulk density of 0.09 g · cm−3, organic matter concentration of 77%, and volumetric water content of 88%. Changes in physical and chemical properties within the peat column as a function of depth contributed to different patterns of seasonal variation in the chemistry of surface and subsurface waters. Seasonal variation in water chemistry was related to temporal changes in plant uptake, organic matter decomposition and element mineralization, and to varying redox conditions associated with fluctuating water table levels. On the average, total Ca, Mg, and N concentrations in Big Run Bog peat were 33, 15, and 1050 μmol · g−1, respectively; exchangeable Ca and Mg concentrations were 45 and 14 μeq · g−1 , respectively. Surface water pH averaged 4.0 and Ca++ concentrations were less than 50 μeq · L−1 . These chemical variables have all been used to distinguish bogs from fens. Physiographically, Big Run Bog is a minerotrophic fen because it receives inputs of water from the surrounding forested upland areas of its watershed. However, chemically, Big Run Bog is more similar to true ombrotrophic bogs than to minerotrophic fens.
    Type of Medium: Electronic Resource
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