ALBERT

Beschreibung: Here, we outline how to identify hydrogenase enzymes from metagenomic fosmid libraries through an activity-based screening approach. A metagenomic fosmid library is constructed in E. coli and the fosmids are transferred into a hydrogenase deletion mutant of Shewanella oneidensis MR-1 (ΔhyaB) via triparental mating. If a fosmid clone exhibits hydrogen-uptake activity, S. oneidensis’ phenotype is restored and hydrogenase activity is indicated by a color change of the medium from yellow to colorless. The screen enables screening of 48 metagenomic fosmid clones in parallel.

Beschreibung: This chapter gives an overview of the general biogeochemistry in the Mediterranean Sea explaining the particularities of the main biogeochemical variables and the physical, biological, and geochemical processes driving their distribution in the main basins of this marginal sea. Each subsection focuses on one essential variable, starting from dissolved oxygen and following inorganic nutrients, dissolved organic carbon and the CO2 system. A brief overview on the utility of those biogeochemical variables to identify water masses is also given. The chapter concludes with a summary of the projections and threats on biogeochemistry in the Mediterranean Sea under different future climate change scenarios.

Beschreibung: Bacteriophages, also called phages, are viruses of bacteria. They are the most common and diverse biological entities on this planet. For metagenomic investigation, their diversity is also their biggest obstacle. The direct metagenomic sequence of environmental phage communities often leads to short genomic fragments limiting the investigation to a few individual aspects of phage biology and diversity. The presented protocol for generating a host-associated metagenome reduces the phage diversity to a concise and accessible size. Metagenome sequencing often leads to complete genomes, and the availability of a suitable host system ensures further experimental investigation.

Beschreibung: Most fish stocks in the European Union (EU) are still being overfished. One recent measure of the EU common fisheries policy to curb overfishing is the introduction of landing obligations that are meant to reduce discards, but the success of landing obligations is controversial, as discards still take place. In the German Western Baltic Sea , discards are currently estimated using ship observer data, but vessels 〈12 m are not sufficiently controlled. We here use an independent method and document widespread discard of undersized cod and flatfish in late summer 2018 using video transects. Discards along the coastline of the south-western Baltic Sea amount to an extrapolated 14.0 t of cod and 1.0 t of flatfish decomposing on the sea floor in 1-13 m depth in a subarea of Mecklenburg Bight that covers only 2.3% of ICES (International Council for the Exploration of the Sea ) subdivisions 22-24, the habitat of Western Baltic cod. Compared to a similar video-mapping seven years earlier (in 2011), the amount of discard increased markedly, suggesting that the implementation of landing obligations in the time between the two mappings for under-sized catches has not resulted in a decrease but an increase of discards. We suggest that higher observed discards of cod in 2018 are also due to a high percentage of cod coming from the 2016-cohort of the Western Baltic cod stock which are just undersized but nevertheless caught by most passive net gear. Our data complement estimates based on ship observer data, while providing the first direct evidence of the fate of discards in the benthic marine habitat.

Beschreibung: Although considerable progress has been made in the management and planning of the marine environment, important gaps still exist in streamlining policies across governance levels, maritime sectors, and between different countries. This can hinder effective Maritime Spatial Planning (MSP) and prevent harmonious cross-sectoral cooperation, and importantly, cross-border or trans-boundary collaboration. These may in turn have serious implications for overall ocean governance and ultimately, marine sustainability. The North Atlantic presents an ideal case-study region for reviewing these issues: North Atlantic countries have different governance structures, and as such, different approaches to marine policy. Therefore, for an effective marine management, cross-sectoral and cross-border MSP in the region, there is a need to review marine and maritime policies in order to identify differences and commonalities among countries. This chapter reviews major policies for the marine environment in the North Atlantic and assesses where differences between countries exist and at which governance level they are being created. Key research questions include: (i) Are there significant differences in marine policy between North Atlantic countries? Moreover, are there any substantial geographical/political differences? (ii) Are there differences in implementation of key policies? Such an analysis requires a sound framework for comparison among countries. To that end, the use of “horrendograms”, a tool increasingly being used by the marine research and planning community to assess such issues, is adopted. Results indicate that key differences between countries are created primarily at a national level of marine governance. Although differences between countries exist, overall strategic targets are similar. For instance, whilst the political systems of certain North Atlantic countries may differ substantially, key objectives for major sectors, such as fisheries and conservation, are similar – even when such objectives are implemented at different levels. Findings from the study can enable targeted policy intervention and, as such, assist the development of future outlooks of ocean governance in the region. Results can also aid the development of future visions and scenarios for MSP in the Atlantic region.

Beschreibung: "Für ein gutes Miteinander auf See“ ist eine Initiative am GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, die sich der Prävention von sexualisierter Belästigung, Diskriminierung und Gewalt (SBDG) auf deutschen Forschungsschiffen widmet. Geleitet wird die Initiative vom Gleichstellungsteam, das in der komplexen Organisationsstruktur der Forschungsschifffahrt viele Akteur*innen zusammenbringen muss, um die Maßnahmen passgenau zu entwickeln und zu etablieren. Auf Forschungsfahrten sind die Menschen für einen längeren Zeitraum auf engem Raum zusammen und können unerwünschten Situationen nicht ausweichen. Das Ziel der Initiative ist es, dafür eine Rettungsinsel zu bieten: Etablierte und klare Strukturen sollen Sicherheit geben und eine Klärung von unerwünschten Situationen ermöglichen. Dieser Beitrag gibt einen Einblick in die Vorgehensweise der Entwicklung der Initiative und erläutert, welche Herausforderungen Forschungsschiffe als Arbeitsort für eine SBDG-Initiative darstellen.

Beschreibung: Dieses Kapitel behandelt die visuelle Navigation von autonomen Unterwasserfahrzeugen (AUVs) mit und ohne gegebene Karte, wobei Letzteres als Simultane Lokalisierung und Kartierung (SLAM) bezeichnet wird. Wir fassen die Herausforderungen und Möglichkeiten in Unterwasserumgebungen zusammen, die die visuelle Navigation von der Landnavigation unterscheiden, und geben auch einen kurzen Überblick über den aktuellen Stand der Technik in diesem Bereich. Dann argumentieren wir als Positionspapier, warum viele dieser Herausforderungen durch eine angemessene Modellierung von Unsicherheiten in der SLAM-Darstellung bewältigt werden könnten. Dies würde insbesondere dem SLAM-Algorithmus ermöglichen, die Mehrdeutigkeit zwischen „Ich sehe das gleiche Merkmal wieder“, „Ich sehe ein anderes, aber ähnlich aussehendes Merkmal“ und „Die Umgebung hat sich verändert und das Merkmal hat sich bewegt“ gründlich zu behandeln.

Beschreibung: In our previous study, a β-N-acetylhexosaminidase (HaHex74) from Haloferula sp. showing high human milk oligosaccharides (HMOs) synthesis ability was identified and characterized. In this study, HaHex74 was further engineered by directed evolution and site-saturation mutagenesis to improve its transglycosylation activity for HMOs synthesis. A mutant (mHaHex74) with improved transglycosylation activity (HaHex74-Asn401Ile/His394Leu) was obtained and characterized. mHaHex74 exhibited maximal activity at pH 5.5 and 35 °C, respectively, which were distinct from that of HaHex74 (pH 6.5 and 45 °C). Moreover, mHaHex74 showed the highest LNT2 conversion ratio of 28.2% from N,N’-diacetyl chitobiose (GlcNAc2), which is 2.2 folds higher than that of HaHex74. A three-enzyme cascade reaction for the synthesis of LNT2 and LNnT from chitin was performed in a 5–L reactor, and the contents of LNT2 and LNnT reached up to 15.0 g Lsingle bond1 and 4.9 g Lsingle bond1, respectively. Therefore, mHaHex74 maybe a good candidate for enzymatic synthesis of HMOs.

Beschreibung: Harmful marine bacteria, such as Vibrio or Aeromonas species, typically exist at low abundance in ocean environments but represent a reservoir from which epidemics can arise. Particularly, Vibrio strains and their associated infections are on the rise globally due to increasing sea surface temperature representing an emergent threat for human and animal health also being responsible for large economic losses in the aquaculture industry worldwide. New technological approaches are needed to improve strategies targeting these pathogens. This review discusses new approaches based on improved sampling strategies and novel analytical methods offering increased accuracy, high throughput, and informativeness to study and detect microbial pathogens in the marine environment. Detecting and characterizing ultra-low-abundance pathogenic strains can serve as a critical tool in risk management and outbreak prevention of diseases caused by emerging marine pathogens.

Beschreibung: As tropical seagrass meadows decline throughout the tropics, propagule transplantation is being used as an effective restoration method. This technique promotes genetic diversity in the restored seagrass meadows. Although many environmental factors, especially temperature and burial, can influence the success of seed/seedling transplantation success, little is known about these effects on transplanted tropical seagrass propagules. To address this knowledge gap, we conducted a 92-day laboratory incubation experiment to test the effects of representive temperatures (20 °C and 30 °C) and burial status (with and without burial) on germination and seedling growth of the tropical seagrass Enhalus acoroides. Results showed that germination rate was 3-fold higher in the treatment without burial (75%) than in the treatment with burial (25%). The germination success rate in the 30 °C treatment was about two times higher than that of the 20 °C treatment. When burial and temperature were tested in combination, germination success was highest in the 30 °C without burial treatment while the lowest rates were obtained in the 20 °C and burial treatment. Further, the temperature of 30 °C benefited leaf and root growth as well. These results illustrate that burial decreased E. acoroides germination, while high temperature enhanced both germination and seedling growth. Thus, transplantation of E. acoroides propagules for tropical seagrass restoration should be conducted when seawater temperature is warm, and the seeds should be fixed on the sediment surface rather than buried.