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  • Articles  (15)
  • Phytoplankton  (15)
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  • 2020-2023  (15)
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  • 1
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kharbush, J. J., Close, H. G., Van Mooy, B. A. S., Arnosti, C., Smittenberg, R. H., Le Moigne, F. A. C., Mollenhauer, G., Scholz-Boettcher, B., Obreht, I., Koch, B. P., Becker, K. W., Iversen, M. H., & Mohr, W. Particulate organic carbon deconstructed: molecular and chemical composition of particulate organic carbon in the ocean. Frontiers in Marine Science, 7, (2020): 518, doi:10.3389/fmars.2020.00518.
    Description: The dynamics of the particulate organic carbon (POC) pool in the ocean are central to the marine carbon cycle. POC is the link between surface primary production, the deep ocean, and sediments. The rate at which POC is degraded in the dark ocean can impact atmospheric CO2 concentration. Therefore, a central focus of marine organic geochemistry studies is to improve our understanding of POC distribution, composition, and cycling. The last few decades have seen improvements in analytical techniques that have greatly expanded what we can measure, both in terms of organic compound structural diversity and isotopic composition, and complementary molecular omics studies. Here we provide a brief overview of the autochthonous, allochthonous, and anthropogenic components comprising POC in the ocean. In addition, we highlight key needs for future research that will enable us to more effectively connect diverse data sources and link the identity and structural diversity of POC to its sources and transformation processes.
    Description: We thank the Hanse Institute for Advanced Studies (HWK) and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) project number 422798570, as well as the Geochemical Society, for funding which made the workshop possible. CA was additionally supported by OCE-1736772. BV was additionally supported by NSF OCE-1756254.
    Keywords: Marine particles ; Water column ; Phytoplankton ; Marine microbes ; Structural analysis ; Organic matter characterization ; Biomarkers
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: cell abundance
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of cell abundances measured by forward scatter. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771421
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: Nutrients
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth and photophysiology of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of nutrients (phosphate, silicate, and nitrate plus nitrite) made over the course of the experiments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771370
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: C and N isotopes
    Description: Carbon and Nitrogen isotopes in an experimental benthic chamber, Maunalua, O’ahu, Hawai’i, 2015-2016 For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/822239
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538393
    Keywords: Macroalgae ; Productivity ; Isotope enrichment ; Coral reef ; Invasive algae ; Phytoplankton
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Thalassiosira pseudonana CCMP1335 in nitrate-limited and nutrient-replete cultures
    Description: The marine diatom Thalassiosira pseudonana clone CCMP 1335 was grown in a continuous culture system on a 14:10 light-dark cycle under either nitrate-limited or nutrient-replete conditions, a photoperiod irradiance of either 50 or 300 micro-mol photons per square meter per second, partial pressures of either 400 or 1000 ppm CO2, and temperatures ranging from 5 to 32 degrees Celsius. Growth rates, photosynthetic rates, respiration rates, C:N ratios, C:Chlorophyll-a ratios, productivity indices, Fv/Fm ratios, and the initial slope and light-saturated asymptote of short-term photosynthesis-irradiance curves are reported. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/779368
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1536581
    Keywords: Climate change ; Phytoplankton ; Light ; Temperature ; CO2 partial pressure ; Acclimation
    Repository Name: Woods Hole Open Access Server
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  • 6
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Synechococcus elongatus CCMP1629 in nitrate-limited and nutrient-replete cultures
    Description: The marine cyanobacterium Synechococcus elongatus clone CCMP1629 was grown in a continuous culture system on a 14:10 light-dark cycle under either nitrate-limited or nutrient-replete conditions, a photoperiod irradiance of either 50 or 300 micro-mol photons per square meter per second, partial pressures of either 400 or 1000 ppm CO2, and temperatures ranging from 20 to 45 degrees Celsius. Growth rates, photosynthetic rates, respiration rates, C:N ratios, C:Chlorophyll-a ratios, productivity indices, Fv/Fm ratios, and the initial slope and light-saturated asymptote of short-term photosynthesis-irradiance curves are reported. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/811093
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1536581
    Keywords: Climate change ; Phytoplankton ; Light ; Temperature ; CO2 partial pressure ; Acclimation
    Repository Name: Woods Hole Open Access Server
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  • 7
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Diatom Matrix RNAseq
    Description: Transcriptome data for bacteria Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, Polaribacter dokdonensis MED152, and Dokdonia MED134 collected eight hours after individual inoculation into a diatom Thalassiosira psuedonana culture. The sequence data description for PRHNA448168 is at https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA448168. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/818765
    Description: NSF Division of Integrative Organismal Systems (NSF IOS) IOS-1656311
    Keywords: Phytoplankton ; Bacteria ; Co-cultures ; Transcriptomes ; RNAseq
    Repository Name: Woods Hole Open Access Server
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  • 8
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: CPR plankton occurrence 2014-2019
    Description: Continous Plankton Recorder phytoplankton and zooplankton occurrence and count data from the Marine Biological Association of the UK, the CPR Survey, in the North Atlantic Ocean from Jan. 2014 to Jan. 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/765141
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1154661, NSF Division of Ocean Sciences (NSF OCE) OCE-1657887
    Keywords: Time series ; Monitoring ; CPR ; Phytoplankton ; Zooplankton ; Diet ; Size
    Repository Name: Woods Hole Open Access Server
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  • 9
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: pH
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth and photophysiology of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of pH made over the course of the experiments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771304
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 10
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: DIC
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth and photophysiology of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of Dissolved Inorganic Carbon (DIC) made over the course of the experiments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771333
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 11
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: cell size
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of cell size expressed as forward scatter as well as in equivalent spherical diameter (ESD) in microns. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771448
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 12
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: POC, PON, Chl a
    Description: The experiments were designed to test the combined effects of CO2, temperatures, and light on growth and photophysiology of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of extracted chlorophyll, particulate organic carbon (POC), and particulate organic nitrogen (PON) made over the course of the experiments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771594
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
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  • 13
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: photophysiology
    Description: The experiments were designed to test the combined effects of CO2, temperatures, and light on the growth of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of photophysiology using the Light curve (LC3) protocol of the Aquapen-C AP-C 100 fluorometer. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771461
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
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  • 14
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Benthic macroalgal carbon uptake rates
    Description: Benthic macroalgal and water column carbon uptake rates in an experimental chamber, Maunalua, O’ahu, Hawai’i, 2015-2016. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/822216
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538393
    Keywords: Macroalgae ; Productivity ; Isotope enrichment ; Coral reef ; Invasive algae ; Phytoplankton
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  • 15
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124(8), (2019): 5999-6014, doi: 10.1029/2019JC015034.
    Description: Oceanic fronts are dynamically active regions of the global ocean that support upwelling and downwelling with significant implications for phytoplankton production and export. However (on time scales urn:x-wiley:jgrc:media:jgrc23568:jgrc23568-math-0001 the inertial time scale), the vertical velocity is 103–104 times weaker than the horizontal velocity and is difficult to observe directly. Using intensive field observations in conjunction with a process study ocean model, we examine vertical motion and its effect on phytoplankton fluxes at multiple spatial horizontal scales in an oligotrophic region in the Western Mediterranean Sea. The mesoscale ageostrophic vertical velocity (∼10 m/day) inferred from our observations shapes the large‐scale phytoplankton distribution but does not explain the narrow (1–10 km wide) features of high chlorophyll content extending 40–60 m downward from the deep chlorophyll maximum. Using modeling, we show that downwelling submesoscale features concentrate 80% of the downward vertical flux of phytoplankton within just 15% of the horizontal area. These submesoscale spatial structures serve as conduits between the surface mixed layer and pycnocline and can contribute to exporting carbon from the sunlit surface layers to the ocean interior.
    Description: The AlborEx experiment was conducted in the framework of PERSEUS EU‐funded project (Grant 287600) and was led by the Spanish National Research Council (CSIC) and involved other national and international partners: Balearic Islands Coastal Observing and Forecasting System (SOCIB, Spain); Consiglio Nazionale delle Ricerche (CNR, Italy); Istituto Nazionale di Oceanografia e di Geofisica Sperimentale (OGS, Italy); and Woods Hole Oceanographic Institution (WHOI, ONR Grant N00014‐16‐1‐3130). Glider operations were partially funded by JERICO FP7 project. Part of this work has been carried out as part of the Copernicus Marine Environment Monitoring Service (CMEMS) MedSUB project. CMEMS is implemented by Mercator Ocean in the framework of a delegation agreement with the European Union. S. R. and A. P. acknowledge support from WHOI Subcontract A101339. Data available from authors: Ship CTDs, glider and VM‐ADCP data files are available in the SOCIB data catalog (https://doi.org/10.25704/z5y2-qpye); model data are available at IMEDEA data catalog https://ide.imedea.uib-csic.es/thredds/catalog/data/projects/alborex/catalog.html. We thank all the crew and participants on board R/V SOCIB for their collaboration and Marc Torner and the SOCIB glider Facility for their efficient cooperation. We also thank B. Mourre for numerical data from the Western Mediterranean Operational Model to initialize the Process Study Ocean Model. Figures were created using the cmocean colormaps package (Thyng et al., 2016).
    Keywords: Vertical motion ; Ocean front ; Mesoscale ; Submesoscale ; Transport ; Phytoplankton
    Repository Name: Woods Hole Open Access Server
    Type: Article
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