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  • Articles  (11,551)
  • 2020-2024  (11,551)
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  • 1
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2023-01-03
    Description: Dataset: Upper-pelagic particle numbers from imagery in the Sargasso Sea and in the Gulf of Trieste
    Description: This dataset represents Log10-particle numbers per volume versus log10-particle size bins at various threshold levels of the image analysis program taken between 4 and 7-meter depth in the Sargasso Sea and the Gulf of Trieste on July 18, 2021. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884596
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-2128438
    Keywords: particle numbers ; shadowgraph imaging ; aquatic gels
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 2
    Publication Date: 2023-01-03
    Description: Dataset: Carbonate chemistry
    Description: Carbonate chemistry data collected as part of a study of the "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" (Barreto Filho et al., 2022). The following results abstract describes these data along with related datasets which can be accessed from the "Related Datasets" section of this page. Many microbial photoautotrophs depend on heterotrophic bacteria for accomplishing essential functions. Environmental changes, however, could alter or eliminate such interactions. We investigated the effects of changing pCO2 on gene expression in co-cultures of 3 strains of picocyanobacteria (Synechococcus strains CC9311 and WH8102 and Prochlorococcus strain MIT9312) paired with the ‘helper’ bacterium Alteromonas macleodii EZ55. Co-culture with cyanobacteria resulted in a much higher number of up- and down-regulated genes in EZ55 than pCO2 by itself. Pathway analysis revealed significantly different expression of genes involved in carbohydrate metabolism, stress response, and chemotaxis, with different patterns of up- or down-regulation in co-culture with different cyanobacterial strains. Gene expression patterns of organic and inorganic nutrient transporter and catabolism genes in EZ55 suggested resources available in the culture media were altered under elevated (800 ppm) pCO2 conditions. Altogether, changing expression patterns were consistent with the possibility that the composition of cyanobacterial excretions changed under the two pCO2 regimes, causing extensive ecophysiological changes in both members of the co-cultures. Additionally, significant downregulation of oxidative stress genes inMIT9312/EZ55 cocultures at 800 ppm pCO2 were consistent with a link between the predicted reduced availability of photorespiratory byproducts (i.e., glycolate/2PG) under this condition and observed reductions in internal oxidative stress loads for EZ55, providing a possible explanation for the previously observed lack of “help” provided by EZ55 to MIT9312 under elevated pCO2. The data stored in this archive permit the recalculation of the pH measurements shown in Table 1 of the results publication Barreto Filho et al. (2022). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883120
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1851085
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 3
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (juvenile oyster condition index)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess the sustainability of oyster populations, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three sites within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML), and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from the inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth, and recruitment were checked monthly. At the midpoint and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the traits of juvenile oysters approximately one month after the initiation of the experiment. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885817
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Predation risk ; Comparative experimental approach ; phenotype ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 4
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (adult oyster survival)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the survival of adult oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884130
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Eastern oyster ; phenotype ; traits ; fitness ; Predation risk ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 5
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (juvenile oyster growth)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the growth of juvenile oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885493
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Growth increment ; Predation risk ; environmental gradients ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 6
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (juvenile oyster survival)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML), and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from the inlet and closest to freshwater input, and the ML site occurs between the inlet and the freshwater input. Oyster survival, growth, and recruitment were checked monthly. At the midpoint and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the survival of juvenile oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885259
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Predation risk ; nonconsumptive effect ; vital rate
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 7
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (oyster recruitment)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability of oyster populations, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the recruitment of larval oysters to the experimental treatments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885720
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Predation risk ; larval recruitment ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 8
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (adult oyster condition index)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the condition index of adult oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885078
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Oyster ; phenotype ; Predation risk ; fitness ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 9
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (adult oyster growth)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the growth of adult oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884362
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: growth ; Predation risk ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 10
    Publication Date: 2023-06-21
    Description: The Fram Strait between Greenland and Spitsbergen is the only deep-water connection between the Arctic Ocean and its surrounding water bodies. Here, the WSC (West Spitsbergen Current) transports warm Atlantic Water into the Arctic, which accounts for a major part of the warming trend measured there in the past. The northern part of the Fram Strait is strongly influenced by the MIZ (Marginal Ice Zone), which causes a stratification of the water column that retains nutrients at the surface. These sustain intense algal blooms, leading to high abundances of zooplankton, linking the primary production and higher trophic levels. Changes in the position of the MIZ and the timing of the algae blooms might affect the zooplankton community and thus the entire Arctic food chain. The aim of this study was to investigate the effect of the ice edge on the zooplankton community in the Fram Strait. Zooplankton samples were taken at the northern (ice influenced) stations N4/5 and the southern (ice-free) station S3 of the Long-Term Ecological Research Observatory HAUSGARTEN established by the Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research (AWI) in the Fram Strait in 1999. MultiNet samples of both stations were collected in 6 years. For 2015, 2017 and 2018, samples covered a depth of 1,000 m with 4 depth intervals (0-50-200-500-1,000 m). Additionally, surface samples (0-50 m) from 2011, 2012 and 2016 were added to the analysis. CTD data and ice parameters were included to test for correlations between species occurrences and the shifting ice edge. It was hypothesized 1) that the plankton community differs between the northern stations N4/5 and the southern station S3, 2) that these differences are caused by the influence of the ice edge and 3) that interannual differences are stronger at N4/5 due to the shifting ice edge. Furthermore, the zooplankton camera LOKI (Lightframe On-sight Key species Investigation) was deployed at S3 in 2017. This approach offers continuous abundance data combined with simultaneously measured environmental parameters and thus allows a closer insight into small-scale zooplankton distributions. Here, it is hypothesized 4) that the results of the LOKI and the MultiNet will differ regarding zooplankton abundance and community composition. An ANOSIM revealed sampling depth to be the only significant factor for differences between samples. Year and location both tested insignificant. While the northern station showed a higher interannual variability of environmental parameters than the southern station, this was not reflected in the zooplankton communities. It is likely that the WSC which transports Atlantic species northwards is the major factor determining the community composition while the influence of the ice edge is minor. Abundances ranged from 4,500 ind.m-3 at the surface level (0-50 m) at N5 in 2015 to almost 14,000 ind.m-3 at the surface at N4 in 2018, with copepods being the most abundant taxon in all samples. While overall abundances were higher at the surface, the number of taxa increased with depth. In general, there was no trend with time or location. However, in 2017 and 2018 large blooms of the appendicularian Fritillaria sp. were found, especially at the northern station. These might be an indicator of warmer temperatures and an increasing borealization of the Arctic. The LOKI and MultiNet hauls compared at station S3 in 2017 showed differences regarding species abundances, with the LOKI often recording only a fraction of what was found in the MultiNet data. This disparity was mostly accounted for by copepods of the genus Oithona, whose translucent bodies were not well captured by the LOKI. On the other hand, the high vertical resolution of the LOKI allowed to detect a close correlation of Metridia longa to Atlantic Water and a niche separation of developmental stages of M. longa with only females and CV performing a diel vertical migration. These results, while not finding a statistically significant difference between the northern stations N4/5 and the southern station S3, illustrate the importance of time series stations in indicator regions such as the Fram Strait in order to monitor climate change processes.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Thesis , notRev
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