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  • Climate change  (4)
  • Radon  (3)
  • Xenopus laevis  (3)
  • 3Rs  (1)
  • Abyssal currents  (1)
  • Elsevier  (8)
  • Springer  (2)
  • Dhaka, Bangladesh  (1)
  • University of California Press  (1)
  • MDPI Publishing
  • Molecular Diversity Preservation International
  • Public Library of Science
  • 2015-2019  (12)
  • 1960-1964
  • 1940-1944
  • 2017  (12)
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  • 2015-2019  (12)
  • 1960-1964
  • 1940-1944
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  • 1
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    Hydrogeologic controls on chemical transport at Malibu Lagoon, CA : implications for land to sea exchange in coastal lagoon systems (2017)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Hydrology: Regional Studies 11 (2017): 219-233, doi:10.1016/j.ejrh.2016.08.003.
    Description: Hydrogeologic controls on seasonal land/sea exchange are investigated in Malibu, California, USA. An assessment of regional groundwater/surface water exchange and associated biogeochemical transport in an intermittently open, coastal lagoon in California is developed using naturally occurring U/Th-series tracers. Nearshore lagoons that are seasonally disconnected from the coastal ocean occupy about 10% of coastal areas worldwide. Lagoon systems often are poorly flushed and thus sensitive to nutrient over-enrichment that can lead to eutrophication, oxygen depletion, and/or pervasive algal blooms. This sensitivity is exacerbated in lagoons that are intermittently closed to surface water exchange with the sea and occur in populous coastal areas. Such estuarine systems are disconnected from the sea during most of the year by wave-built barriers, but during the rainy season these berms can breach, enabling direct water exchange. Using naturally-occurring 222Rn as groundwater tracer, we estimate that groundwater discharge to Malibu Lagoon during open berm conditions was one order of magnitude higher (21 ± 17 cm/day) than during closed berm conditions (1.8 ± 1.4 cm/day). The SGD (submarine groundwater discharge) into nearshore coastal waters at the SurferRider and Colony Malibu was 4.2 cm/day on average. The exported total dissolved nitrogen (TDN) through the berm during closed berm was 1.6 × 10−3 mol/day, whereas during open berm (exported by the Creek) was 3.5 × 103 mol/day. Although these evaluations are specific to the collection campaigns the 2009 and 2010 hydro years, these two distinct hydrologic scenarios play an important role in the seasonality and geochemical impact of land/sea exchange, and highlight the sensitivity of such systems to future impacts such as sea level rise and increasing coastal populations.
    Description: This work was co-funded by the City of Malibu and the U.S. Geological Survey.
    Keywords: Regional groundwater flow ; Submarine groundwater discharge ; Radon ; Hydrologic time series
    Repository Name: Woods Hole Open Access Server
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  • 2
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    Generation of a Xenopus laevis F1 albino J strain by genome editing and oocyte host-transfer (2017)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Developmental Biology 426 (2017): 188–193, doi:10.1016/j.ydbio.2016.03.006.
    Description: Completion of the Xenopus laevis genome sequence from inbred J strain animals has facilitated the generation of germline mutant X. laevis using targeted genome editing. In the last few years, numerous reports have demonstrated that TALENs are able to induce mutations in F0 Xenopus embryos, but none has demonstrated germline transmission of such mutations in X. laevis. In this report we used the oocyte host-transfer method to generate mutations in both tyrosinase homeologs and found highly-penetrant germline mutations; in contrast, embryonic injections yielded few germline mutations. We also compared the distribution of mutations in several F0 somatic tissues and germ cells and found that the majority of mutations in each tissue were different. These results establish that X. laevis J strain animals are very useful for generating germline mutations and that the oocyte host-transfer method is an efficient technique for generating mutations in both homeologs.
    Description: This work was supported by grants from the NIH (OD010997 and HD084409).
    Keywords: Xenopus laevis ; TALENs ; J strain ; Tyrosinase ; Oocyte host-transfer ; Genome editing
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Benthic storms, nepheloid layers, and linkage with upper ocean dynamics in the western North Atlantic (2017)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Geology 385 (2017): 304–327, doi:10.1016/j.margeo.2016.12.012.
    Description: Benthic storms are episodic periods of strong abyssal currents and intense, benthic nepheloid (turbid) layer development. In order to interpret the driving forces that create and sustain these storms, we synthesize measurements of deep ocean currents, nephelometer-based particulate matter (PM) concentrations, and seafloor time-series photographs collected during several science programs that spanned two decades in the western North Atlantic. Benthic storms occurred in areas with high sea-surface eddy kinetic energy, and they most frequently occurred beneath the meandering Gulf Stream or its associated rings, which generate deep cyclones, anticyclones, and/or topographic waves; these create currents with sufficient bed-shear stress to erode and resuspend sediment, thus initiating or enhancing benthic storms. Occasionally, strong currents do not correspond with large increases in PM concentrations, suggesting that easily erodible sediment was previously swept away. Periods of moderate to low currents associated with high PM concentrations are also observed; these are interpreted as advection of PM delivered as storm tails from distal storm events. Outside of areas with high surface and deep eddy kinetic energy, benthic nepheloid layers are weak to non-existent, indicating that benthic storms are necessary to create and maintain strong nepheloid layers. Origins and intensities of benthic storms are best identified using a combination of time-series measurements of bottom currents, PM concentration, and bottom photographs, and these should be coupled with water-column and surface-circulation data to better interpret the specific relations between shallow and deep circulation patterns. Understanding the generation of benthic nepheloid layers is necessary in order to properly interpret PM distribution and its influence on global biogeochemistry.
    Description: Funding for construction of the Bottom Ocean Monitor was provided by Lamont-Doherty Geological Observatory (now Lamont-Doherty Earth Observatory). BOM and mooring deployments and data analysis were funded by the Office of Naval Research (contracts N00014-75-C-0210 and N00014-80-C-0098 to Biscaye and Gardner at Lamont-Doherty; Contracts N00014-79-C-0071 and N00014-82-C-0019 at Woods Hole Oceanographic Institution and ONR Contracts N00014-75-C-0210 and N00014-80-C-0098 at Lamont-Doherty Geological Observatory to Tucholke), Sandia National Laboratories (contract SL-16-5279 to Gardner), the National Science Foundation (contract OCE 1536565 to Gardner and Richardson), Earl F. Cook Professorship (Gardner), and the Department of Energy (contract DE-FG02-87ER-60555 to Biscaye).
    Keywords: Benthic storms ; Benthic nepheloid layer ; Abyssal currents ; Seafloor erosion ; Eddy kinetic energy ; Cyclogenesis
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Relevance of carbon stocks of marine sediments for national greenhouse gas inventories of maritime nations (2017)
    Springer
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Carbon Balance and Management 12 (2017): 10, doi:10.1186/s13021-017-0077-x.
    Description: Determining national carbon stocks is essential in the framework of ongoing climate change mitigation actions. Presently, assessment of carbon stocks in the context of greenhouse gas (GHG)-reporting on a nation-by-nation basis focuses on the terrestrial realm, i.e., carbon held in living plant biomass and soils, and on potential changes in these stocks in response to anthropogenic activities. However, while the ocean and underlying sediments store substantial quantities of carbon, this pool is presently not considered in the context of national inventories. The ongoing disturbances to both terrestrial and marine ecosystems as a consequence of food production, pollution, climate change and other factors, as well as alteration of linkages and C-exchange between continental and oceanic realms, highlight the need for a better understanding of the quantity and vulnerability of carbon stocks in both systems. We present a preliminary comparison of the stocks of organic carbon held in continental margin sediments within the Exclusive Economic Zone of maritime nations with those in their soils. Our study focuses on Namibia, where there is a wealth of marine sediment data, and draws comparisons with sediment data from two other countries with different characteristics, which are Pakistan and the United Kingdom. Results indicate that marine sediment carbon stocks in maritime nations can be similar in magnitude to those of soils. Therefore, if human activities in these areas are managed, carbon stocks in the oceanic realm—particularly over continental margins—could be considered as part of national GHG inventories. This study shows that marine sediment organic carbon stocks can be equal in size or exceed terrestrial carbon stocks of maritime nations. This provides motivation both for improved assessment of sedimentary carbon inventories and for reevaluation of the way that carbon stocks are assessed and valued. The latter carries potential implications for the management of human activities on coastal environments and for their GHG inventories.
    Description: We acknowledge research support from ETH Zurich and the Swiss National Science Foundation.
    Keywords: Carbon stocks ; Sediments ; Oceans ; Climate change ; Exclusive Economic Zone ; Carbon inventory
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Major impacts of climate change on deep-sea benthic ecosystems (2017)
    University of California Press
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Elementa Science of the Anthropocene 5 (2017): 4, doi:10.1525/elementa.203.
    Description: The deep sea encompasses the largest ecosystems on Earth. Although poorly known, deep seafloor ecosystems provide services that are vitally important to the entire ocean and biosphere. Rising atmospheric greenhouse gases are bringing about significant changes in the environmental properties of the ocean realm in terms of water column oxygenation, temperature, pH and food supply, with concomitant impacts on deep-sea ecosystems. Projections suggest that abyssal (3000–6000 m) ocean temperatures could increase by 1°C over the next 84 years, while abyssal seafloor habitats under areas of deep-water formation may experience reductions in water column oxygen concentrations by as much as 0.03 mL L–1 by 2100. Bathyal depths (200–3000 m) worldwide will undergo the most significant reductions in pH in all oceans by the year 2100 (0.29 to 0.37 pH units). O2 concentrations will also decline in the bathyal NE Pacific and Southern Oceans, with losses up to 3.7% or more, especially at intermediate depths. Another important environmental parameter, the flux of particulate organic matter to the seafloor, is likely to decline significantly in most oceans, most notably in the abyssal and bathyal Indian Ocean where it is predicted to decrease by 40–55% by the end of the century. Unfortunately, how these major changes will affect deep-seafloor ecosystems is, in some cases, very poorly understood. In this paper, we provide a detailed overview of the impacts of these changing environmental parameters on deep-seafloor ecosystems that will most likely be seen by 2100 in continental margin, abyssal and polar settings. We also consider how these changes may combine with other anthropogenic stressors (e.g., fishing, mineral mining, oil and gas extraction) to further impact deep-seafloor ecosystems and discuss the possible societal implications. 
    Description: A.K. Sweetman D.O.B. Jones and R. Danovaro acknowledge funding from the European Union Seventh Framework Programme (FP7/2007–2013) under grant agreement 603418 (MIDAS), and the European Union Horizon 2020 research and innovation programme under grant agreement 689518 (MERCES). L.-A. Henry and J.M. Roberts acknowledge funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 678760 (ATLAS).
    Keywords: Deep-sea ; Climate change ; Ecosystem functioning ; Biodiversity ; Benthos
    Repository Name: Woods Hole Open Access Server
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  • 6
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    Utility of Rn-222 as a passive tracer of subglacial distributed system drainage (2017)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Earth and Planetary Science Letters 462 (2017): 180-188, doi:10.1016/j.epsl.2016.12.039.
    Description: Water flow beneath the Greenland Ice Sheet (GrIS) has been shown to include slow-inefficient (distributed) and fast-efficient (channelized) drainage systems, in response to meltwater delivery to the bed via both moulins and surface lake drainage. This partitioning between channelized and distributed drainage systems is difficult to quantify yet it plays an important role in bulk meltwater chemistry and glacial velocity, and thus subglacial erosion. Radon-222, which is continuously produced via the decay of 226Ra, accumulates in meltwater that has interacted with rock and sediment. Hence, elevated concentrations of 222Rn should be indicative of meltwater that has flowed through a distributed drainage system network. In the spring and summer of 2011 and 2012, we made hourly 222Rn measurements in the proglacial river of a large outlet glacier of the GrIS (Leverett Glacier, SW Greenland). Radon-222 activities were highest in the early melt season (10–15 dpm L−1), decreasing by a factor of 2–5 (3–5 dpm L−1) following the onset of widespread surface melt. Using a 222Rn mass balance model, we estimate that, on average, greater than 90% of the river 222Rn was sourced from distributed system meltwater. The distributed system 222Rn flux varied on diurnal, weekly, and seasonal time scales with highest fluxes generally occurring on the falling limb of the hydrograph and during expansion of the channelized drainage system. Using laboratory based estimates of distributed system 222Rn, the distributed system water flux generally ranged between 1–5% of the total proglacial river discharge for both seasons. This study provides a promising new method for hydrograph separation in glacial watersheds and for estimating the timing and magnitude of distributed system fluxes expelled at ice sheet margins.
    Description: U.S. National Science Foundation Arctic Natural Sciences Program (ANS-1256669); Woods Hole Oceanographic Institution Arctic Research Initiative, Ocean Ventures Fund, and Ocean Climate Change Institute; United Kingdom Natural Environment Research Council studentship (NE/152830X/1); the Carnegie Trust, Edinburgh University Development Trust.
    Keywords: Radon ; Greenland ; Glacier ; Proglacial river ; Meltwater
    Repository Name: Woods Hole Open Access Server
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  • 7
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    Luteinizing Hormone is an effective replacement for hCG to induce ovulation in Xenopus (2017)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Developmental Biology 426 (2017): 442–448, doi:10.1016/j.ydbio.2016.05.028.
    Description: Injection of human Chorionic Gonadotropin (hCG) directly into the dorsal lymph sac of Xenopus is a commonly used protocol for induction of ovulation, but recent shortages in the stocks of commercially available hCG as well as lack of a well tested alternative have resulted in frustrating experimental delays in laboratories that predominantly use Xenopus in their research. Mammalian Luteinizing Hormones (LH) share structural similarity, functional equivalency, and bind the same receptor as hCG; this suggests that LH may serve as a good alternative to hCG for promoting ovulation in Xenopus. LH has been found to induce maturation of Xenopus oocytes in vitro, but whether it can be used to induce ovulation in vivo has not been examined. Here we compared the ability of four mammalian LH proteins, bovine (bLH), human (hLH), ovine (oLH), porcine (pLH), to induce ovulation in Xenopus when injected into the dorsal lymph sac of sexually mature females. We find that both ovine and human LH, but not bovine or porcine, are good substitutes for hCG for induction of ovulation in WT and J strain Xenopus laevis and Xenopus tropicalis.
    Description: This work was supported by a grant from the NIHP40OD010997.
    Keywords: Xenopus laevis ; J strain ; Luteinizing Hormone ; Ovulation ; Chorionic gonadotropin
    Repository Name: Woods Hole Open Access Server
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  • 8
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    Expanding the genetic toolkit in Xenopus : approaches and opportunities for human disease modeling (2017)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Developmental Biology 426 (2017): 325-335, doi:10.1016/j.ydbio.2016.04.009.
    Description: The amphibian model Xenopus, has been used extensively over the past century to study multiple aspects of cell and developmental biology. Xenopus offers advantages of a non-mammalian system, including high fecundity, external development, and simple housing requirements, with additional advantages of large embryos, highly conserved developmental processes, and close evolutionary relationship to higher vertebrates. There are two main species of Xenopus used in biomedical research, Xenopus laevis and Xenopus tropicalis; the common perception is that both species are excellent models for embryological and cell biological studies, but only Xenopus tropicalis is useful as a genetic model. The recent completion of the Xenopus laevis genome sequence combined with implementation of genome editing tools, such as TALENs (transcription activator-like effector nucleases) and CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR associated nucleases), greatly facilitates the use of both Xenopus laevis and Xenopus tropicalis for understanding gene function in development and disease. In this paper, we review recent advances made in Xenopus laevis and Xenopus tropicalis with TALENs and CRISPR-Cas and discuss the various approaches that have been used to generate knockout and knock-in animals in both species. These advances show that both Xenopus species are useful for genetic approaches and in particular counters the notion that Xenopus laevis is not amenable to genetic manipulations.
    Description: This work was supported by the National Institutes of Health (P40 OD010997 to M.E.H., R01 HD084409 to M.E.H., R01 HL112618 to P.T. and F.C., and R01 HL127640 to P.T. and F.C.; and the U.S. Environmental Protection Agency (G11E10367 to D.F.).
    Keywords: CRISPR-Cas ; TALENs ; J strain ; Xenopus laevis ; Xenopus tropicalis ; Knock-in ; Human disease model
    Repository Name: Woods Hole Open Access Server
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  • 9
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    Observations of nearshore groundwater discharge : Kahekili Beach Park submarine springs, Maui, Hawaii (2017)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Hydrology: Regional Studies 11 (2017): 147-165, doi:10.1016/j.ejrh.2015.12.056.
    Description: The study region encompasses the nearshore, coastal waters off west Maui, Hawaii. Here abundant groundwater—that carries with it a strong land-based fingerprint—discharges into the coastal waters and over a coral reef. Coastal groundwater discharge is a ubiquitous hydrologic feature that has been shown to impact nearshore ecosystems and material budgets. A unique combined geochemical tracer and oceanographic time-series study addressed rates and oceanic forcings of submarine groundwater discharge at a submarine spring site off west Maui, Hawaii. Estimates of submarine groundwater discharge were derived for a primary vent site and surrounding coastal waters off west Maui, Hawaii using an excess 222Rn (t1/2 = 3.8 d) mass balance model. Such estimates were complemented with a novel thoron (220Rn, t1/2 = 56 s) groundwater discharge tracer application, as well as oceanographic time series and thermal infrared imagery analyses. In combination, this suite of techniques provides new insight into the connectivity of the coastal aquifer with the near-shore ocean and examines the physical drivers of submarine groundwater discharge. Lastly, submarine groundwater discharge derived constituent concentrations were tabulated and compared to surrounding seawater concentrations. Such work has implications for the management of coastal aquifers and downstream nearshore ecosystems that respond to sustained constituent loadings via this submarine route.
    Description: This research was primarily funded by the USGS Coastal and Marine Geology Program (CMGP). CRG acknowledges support from the National Oceanic and Atmospheric Administration, Project R/SB-12, which is sponsored by the University of Hawaii Sea Grant College Program, SOEST, under Institutional Grant No. NA14OAR4170071 from NOAA Office of Sea Grant, Department of Commerce.
    Keywords: Regional groundwater flow ; Submarine groundwater discharge ; Radon ; Thoron ; Thermal infrared ; Oceanographic time series ; Salinity
    Repository Name: Woods Hole Open Access Server
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  • 10
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    Vulnerability of the Bay of Bengal to Ocean Acidification. (2017)
    IUCN, International Union for Conservation of Nature, Bangladesh Country Office | Dhaka, Bangladesh
    Details
    Publication Date: 2021-05-19
    Description: Fossil-fuel combustion releases carbon dioxide to the atmosphere, leading to a warmer climate. Increasing atmospheric CO2 is changing the global ocean’s chemistry, as one-fourth of the anthropogenic CO2 is absorbed by the ocean. In addition, ocean absorbs CO2 from the respiration and breakdown of dead organic matter. When CO2 dissolves in seawater, it forms carbonic acid, decreasing both ocean pH and the concentration of the carbonate ion. The historical trends analysis showed an increasing water temperature with a decreasing pH levels over the period which may lead substantial effect on the biodiversity of the Bay of Bengal. The Institute of Marine Sciences and Fisheries (IMSF) in Chittagong University have been contributed in research and data generation from the coastal and marine ecosystems of Bangladesh. In addition, Bangladesh Navy, Bangladesh Inland Water Transport Authority and Coast Guard have been significantly contributed in hydrographical data collection and monitoring of the shelf water of Bangladesh in the Bay of Bengal. Ocean acidification could affect marine
    Description: Published
    Keywords: Ocean acidification ; Carbon dioxide ; Climate change ; CO2
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: vi + 55pp.
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  • 11
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    An optimized method for cryogenic storage of Xenopus sperm to maximise the effectiveness of research using genetically altered frogs (2017)
    Elsevier
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Theriogenology 92 (2017): 149–155, doi:10.1016/j.theriogenology.2017.01.007.
    Description: Cryogenic storage of sperm from genetically altered Xenopus improves cost effectiveness and animal welfare associated with their use in research; currently it is routine for X. tropicalis but not reliable for X. laevis. Here we compare directly the three published protocols for Xenopus sperm freeze-thaw and determine whether sperm storage temperature, method of testes maceration and delays in the freezing protocols affect successful fertilisation and embryo development in X. laevis. We conclude that the protocol is robust and that the variability observed in fertilisation rates is due to differences between individuals. We show that the embryos made from the frozen-thawed sperm are normal and that the adults they develop into are reproductively indistinguishable from others in the colony. This opens the way for using cryopreserved sperm to distribute dominant genetically altered (GA) lines, potentially saving travel-induced stress to the male frogs, reducing their numbers used and making Xenopus experiments more cost effective.
    Description: The EXRC is supported by the Wellcome Trust (101480/Z), BBSRC (BB/K019988/1) and NC3Rs (NC/P001009/1). The NXR is supported by a grant from the NIH (P40 OD010997).
    Keywords: Xenopus ; Sperm ; Cryopreservation ; Stock centres ; Genetically altered lines ; 3Rs
    Repository Name: Woods Hole Open Access Server
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  • 12
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    Ecosystem responses to climate change at a Low Arctic and a High Arctic long-term research site (2017)
    Springer
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ambio 46, Supple. 1 (2017): 160-173, doi:10.1007/s13280-016-0870-x.
    Description: Long-term measurements of ecological effects of warming are often not statistically significant because of annual variability or signal noise. These are reduced in indicators that filter or reduce the noise around the signal and allow effects of climate warming to emerge. In this way, certain indicators act as medium pass filters integrating the signal over years-to-decades. In the Alaskan Arctic, the 25-year record of warming of air temperature revealed no significant trend, yet environmental and ecological changes prove that warming is affecting the ecosystem. The useful indicators are deep permafrost temperatures, vegetation and shrub biomass, satellite measures of canopy reflectance (NDVI), and chemical measures of soil weathering. In contrast, the 18-year record in the Greenland Arctic revealed an extremely high summer air-warming of 1.3°C/decade; the cover of some plant species increased while the cover of others decreased. Useful indicators of change are NDVI and the active layer thickness.
    Description: The Toolik research was supported in part by NSF Grants DEB 0207150, DEB 1026843, ARC 1107701, and ARC 1504006.
    Keywords: Alaska Toolik ; Climate change ; Ecological effects ; Greenland Zackenberg ; Medium pass filter ; Vegetation
    Repository Name: Woods Hole Open Access Server
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