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  • Articles  (45,920)
  • Elsevier  (41,150)
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  • Articles  (45,920)
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  • 1
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    Designing a Decision Support System for Subsurface Activities: A Meta Analysis of the Design of a Social Acceptance Motivated Decision Support System for Subsurface Activities in the Netherlands (2014)
    Elsevier
    Details
    Publication Date: 2014-12-07
    Description: Publication date: 2014 Source: Procedia Environmental Sciences, Volume 22 Author(s): Herman van Os , Rien Herber , Bert Scholtens The decision-making process for subsurface activities in the Netherlands has been unable to cope with the driving forces related to social acceptance in several recently proposed subsurface activities. We therefore investigated the possibility to include the triangle of social acceptance in the decision-making process. Our conceptual model relates the stakeholders, their goals and the driving forces to each other. We developed a framework, which describes the interaction between eleven design criteria for a Decision Support System (DSS). This framework will enable us to design a better, from a social acceptance perspective, DSS for subsurface activities in the Netherlands. Since the goals addressed in the decision-making process are very broad and the stakeholders are quite diverse, a single uniform DSS is not able to provide a satisfactory solution. We therefore suggest to design a DSS that is matched with each class of social acceptance.
    Electronic ISSN: 1878-0296
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Geosciences
    Published by Elsevier
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  • 2
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    Development of Planning Support System for Welfare Urban Design – Optimal Route Finding for Wheelchair Users (2014)
    Elsevier
    Details
    Publication Date: 2014-12-07
    Description: Publication date: 2014 Source: Procedia Environmental Sciences, Volume 22 Author(s): Yoshie Inada , Shinobu Izumi , Motoya Koga , Shigehito Matsubara We are developing a planning support system for welfare urban design. If we quantify the optimal route (the route that is the easiest to pass through) for challenged people, we will be able to select the areas that require adjustment in terms of accessibility with greater efficiency. In this paper we report on our development of the prototype system to present an optimal route for wheelchair users, and also, the two workshops we had for evaluating the accuracy of the resulted optimal route.
    Electronic ISSN: 1878-0296
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Geosciences
    Published by Elsevier
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  • 3
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    Modeling Usersʼ Work Activities in a Smart Home (2014)
    Elsevier
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    Publication Date: 2014-12-07
    Description: Publication date: 2014 Source: Procedia Environmental Sciences, Volume 22 Author(s): Erfaneh Allameh , Mohammadali Heidari , Bauke De Vries , Harry Timmermans , Mohammad Masoud , Farhang Mozaffar Almost everyone would agree that teleworking is increasingly growing; but beyond this broad statement, we know little about how people behave when they work at home and how they balance their work and life. User comfort and productivity cannot be addressed properly, without a deep understanding of usersʼ working behavior. This gap is even deeper when it comes to the domain of smart homes as new types of housing which aim to enhance working at home. Hence, more user-centered studies are needed to comprehend the interrelationships among housing, technology, daily life and the work activities. In this paper, we use the outputs of an experiment to model usersʼ work activities in a smart home. The experiment was conducted among 254 respondents, who were asked to explore a smart home in a virtual environment and then to arrange their daily activities including work related activities in the virtual smart home. A choice modeling approach, based on the Multinomial Logit Model (MNL), is applied to model how an individual works at a smart home given influential factors such as the individualsʼ socio-demographic profile and their current lifestyle. Two features of working in a smart home are covered in this paper, namely, “the integration of work activities with other daily activities” and “the location of work activities in the house”. The results give better insight into the future trends of working at home and the effects of smart homes on working behavior of people. The results can be used in further developments of both smart homes and teleworking.
    Electronic ISSN: 1878-0296
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Geosciences
    Published by Elsevier
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  • 4
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    Hybrid Choice Models: Principles and Recent Progress Incorporating Social Influence and Nonlinear Utility Functions (2014)
    Elsevier
    Details
    Publication Date: 2014-12-07
    Description: Publication date: 2014 Source: Procedia Environmental Sciences, Volume 22 Author(s): Jinhee Kim , Soora Rasouli , Harry Timmermans Hybrid choice models have been developed as an extension of discrete choice models, particularly multinomial logit models, in an attempt to include attitudinal variables. The quintessence of hybrid choice models is that a model of attitude formation is estimated and the estimated attitudes are added to the commonly used set of attributes in discrete choice models: attributes of the choice alternatives and socio-demographic variables. The most commonly applied model is based on linear specifications, both for the attitude model and the utility function. In this review paper, we discuss the principles underlying the hybrid choice model, summarize the specifications used in previous applications of the model and then continue discussing recent progress that added social influence to the model specification and replaced the linear specification of the utility function with a nonlinear function.
    Electronic ISSN: 1878-0296
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Geosciences
    Published by Elsevier
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  • 5
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    Linking Data and Converging Systems for Smarter Urban Services: Two Cases of U-City Service in Korea (2014)
    Elsevier
    Details
    Publication Date: 2014-12-07
    Description: Publication date: 2014 Source: Procedia Environmental Sciences, Volume 22 Author(s): Yountaik Leem , Sang Ho Lee , Jungho Yoon To overcome many difficulties in sustaining the satisfying quality of life for a large population 1 , urban spaces are evolving toward more efficient spaces by combination with ICTs (information and communication technologies) and raising the possibility to provide improved urban services which can enrich the quality of life of the citizen. In many cities over the world, a good number of public and private services in transportation, environment, urban safety from crime or disaster, health and other fields are designed and implemented with IT infrastructure. In spite of the expectation of cost-effective urban services based on the linkage between data and systems, obstructions in administrative and technical domains have made it difficult to be implemented. In this study, two advanced ICTs based urban services, which were developed by linkage and convergence of urban information and systems of Korea were introduced and analysed. The structural design of system convergence and data sharing scheme of Carbon Emission Monitoring System (CEMS) in Sejong City uses UIS (Urban Information System for local authorities), GIS data and other data provided by the public agencies, such as Korea Meteorological Administration for the monitoring and analysing the characteristics of the energy consumption of household 2 . Another system, Urban Integrated CCTV Control System (ICCS) in Anyang City, shows integrated CCTV networks for crime prevention, traffic control and public facility management to provide extended urban services, such as disaster prevention, police investigation and others. Qualitative and Quantitative effects analyses with technical and policy directions were suggested for the development and improvement of future urban services for a liveable city.
    Electronic ISSN: 1878-0296
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Geosciences
    Published by Elsevier
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  • 6
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    BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm (2014)
    Oxford University Press
    Details
    Publication Date: 2014-11-07
    Description: Motivation: Mapping of high-throughput sequencing data and other bulk sequence comparison applications have motivated a search for high-efficiency sequence alignment algorithms. The bit-parallel approach represents individual cells in an alignment scoring matrix as bits in computer words and emulates the calculation of scores by a series of logic operations composed of AND, OR, XOR, complement, shift and addition. Bit-parallelism has been successfully applied to the longest common subsequence (LCS) and edit-distance problems, producing fast algorithms in practice. Results: We have developed BitPAl, a bit-parallel algorithm for general, integer-scoring global alignment. Integer-scoring schemes assign integer weights for match, mismatch and insertion/deletion. The BitPAl method uses structural properties in the relationship between adjacent scores in the scoring matrix to construct classes of efficient algorithms, each designed for a particular set of weights. In timed tests, we show that BitPAl runs 7–25 times faster than a standard iterative algorithm. Availability and implementation: Source code is freely available for download at http://lobstah.bu.edu/BitPAl/BitPAl.html . BitPAl is implemented in C and runs on all major operating systems. Contact : jloving@bu.edu or yhernand@bu.edu or gbenson@bu.edu Supplementary information : Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
    Published by Oxford University Press
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  • 7
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    gCUP: rapid GPU-based HIV-1 co-receptor usage prediction for next-generation sequencing (2014)
    Oxford University Press
    Details
    Publication Date: 2014-11-07
    Description: : Next-generation sequencing (NGS) has a large potential in HIV diagnostics, and genotypic prediction models have been developed and successfully tested in the recent years. However, albeit being highly accurate, these computational models lack computational efficiency to reach their full potential. In this study, we demonstrate the use of graphics processing units (GPUs) in combination with a computational prediction model for HIV tropism. Our new model named gCUP, parallelized and optimized for GPU, is highly accurate and can classify 〉175 000 sequences per second on an NVIDIA GeForce GTX 460. The computational efficiency of our new model is the next step to enable NGS technologies to reach clinical significance in HIV diagnostics. Moreover, our approach is not limited to HIV tropism prediction, but can also be easily adapted to other settings, e.g. drug resistance prediction. Availability and implementation: The source code can be downloaded at http://www.heiderlab.de Contact: d.heider@wz-straubing.de
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
    Published by Oxford University Press
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  • 8
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    Fast construction of FM-index for long sequence reads (2014)
    Oxford University Press
    Details
    Publication Date: 2014-11-07
    Description: : We present a new method to incrementally construct the FM-index for both short and long sequence reads, up to the size of a genome. It is the first algorithm that can build the index while implicitly sorting the sequences in the reverse (complement) lexicographical order without a separate sorting step. The implementation is among the fastest for indexing short reads and the only one that practically works for reads of averaged kilobases in length. Availability and implementation: https://github.com/lh3/ropebwt2 Contact: hengli@broadinstitute.org
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
    Published by Oxford University Press
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  • 9
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    AliView: a fast and lightweight alignment viewer and editor for large datasets (2014)
    Oxford University Press
    Details
    Publication Date: 2014-11-07
    Description: : AliView is an alignment viewer and editor designed to meet the requirements of next-generation sequencing era phylogenetic datasets. AliView handles alignments of unlimited size in the formats most commonly used, i.e. FASTA, Phylip, Nexus, Clustal and MSF. The intuitive graphical interface makes it easy to inspect, sort, delete, merge and realign sequences as part of the manual filtering process of large datasets. AliView also works as an easy-to-use alignment editor for small as well as large datasets. Availability and implementation: AliView is released as open-source software under the GNU General Public License, version 3.0 (GPLv3), and is available at GitHub ( www.github.com/AliView ). The program is cross-platform and extensively tested on Linux, Mac OS X and Windows systems. Downloads and help are available at http://ormbunkar.se/aliview Contact: anders.larsson@ebc.uu.se Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
    Published by Oxford University Press
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  • 10
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    Trowel: a fast and accurate error correction module for Illumina sequencing reads (2014)
    Oxford University Press
    Details
    Publication Date: 2014-11-07
    Description: Motivation: The ability to accurately read the order of nucleotides in DNA and RNA is fundamental for modern biology. Errors in next-generation sequencing can lead to many artifacts, from erroneous genome assemblies to mistaken inferences about RNA editing. Uneven coverage in datasets also contributes to false corrections. Result: We introduce Trowel, a massively parallelized and highly efficient error correction module for Illumina read data. Trowel both corrects erroneous base calls and boosts base qualities based on the k -mer spectrum. With high-quality k -mers and relevant base information, Trowel achieves high accuracy for different short read sequencing applications.The latency in the data path has been significantly reduced because of efficient data access and data structures. In performance evaluations, Trowel was highly competitive with other tools regardless of coverage, genome size read length and fragment size. Availability and implementation: Trowel is written in C++ and is provided under the General Public License v3.0 (GPLv3). It is available at http://trowel-ec.sourceforge.net . Contact: euncheon.lim@tue.mpg.de or weigel@tue.mpg.de Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
    Published by Oxford University Press
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