ALBERT

Description: Greenstreet, S. P. R., Fraser, H. M., Rogers, S. I., Trenkel, V. M., Simpson, S. D., and Pinnegar, J. K. 2012. Redundancy in metrics describing the composition, structure, and functioning of the North Sea demersal fish community. – ICES Journal of Marine Science, 69: 8–22. Broader ecosystem management objectives for North Sea demersal fish currently focus on restoring community size structure. However, most policy drivers explicitly concentrate on restoring and conserving biodiversity, and it has not yet been established that simply restoring demersal fish size composition will be sufficient to reverse declines in biodiversity and ensure a generally healthy community. If different aspects of community composition, structure, and function vary independently, then to monitor all aspects of community general health will require application of a suite of metrics. This assumes low redundancy among the metrics used in any such suite and implies that addressing biodiversity issues specifically will require explicit management objectives for particular biodiversity metrics. This issue of metric redundancy is addressed, and 15 metrics covering five main attributes of community composition, structure, and function are applied to groundfish survey data. Factor analysis suggested a new interpretation of the metric information and indicated that a minimum suite of seven metrics was necessary to ensure that all changes in the general health of the North Sea demersal fish community were monitored properly. Covariance among size-based and species-diversity metrics was low, implying that restoration of community size structure would not necessarily reverse declines in species diversity.

Description: Dankel, D. J., Aps, R., Padda, G., Röckmann, C., van der Sluijs, J. P., Wilson, D. C., and Degnbol, P. 2012. Advice under uncertainty in the marine system. – ICES Journal of Marine Science, 69: 3–7. There is some uncertainty in the fisheries science–policy interface. Although progress has been made towards more transparency and participation in fisheries science in ICES Areas, routine use of state-of-the-art quantitative and qualitative tools to address uncertainty systematically is still lacking. Fisheries science that gives advice to policy-making is plagued by uncertainties; the stakes of the policies are high and value-laden and need therefore to be treated as an example of "post-normal science" (PNS). To achieve robust governance, understanding of the characteristics and implications of the scientific uncertainties for management strategies need to come to the centre of the table. This can be achieved using state-of-the-art tools such as pedigree matrices and uncertainty matrices, as developed by PNS scholars and used in similar science–policy arenas on other complex issues. An explicit extension of the peer community within maritime systems will be required to put these new tools in place. These new competences become even more important as many countries within the ICES Area are now embarking on new policies.

Description: Browman, H.I. 2012. Quo Vadimus. – ICES Journal of Marine Science, 69: 1–2.

Description: Hüssy, K., Coad, J. O., Farrell, E. D., Clausen, L. A. W., and Clarke, M. W. 2012. Age verification of boarfish ( Capros aper ) in the Northeast Atlantic. – ICES Journal of Marine Science, 69: 34–40. The boarfish ( Capros aper ) is a pelagic species of recent interest to the fishing industry, with landings increasing by 〉500% over the past 3 years. The objective of the study was to provide a method for age determination based on whole sagittal otoliths, with the results to be used in stock assessment. Translucent zones laid down at regular intervals are identified by marginal increment analysis as seasonally recurring. Translucent zones are formed between September/October and March/April, regardless of fish age. The occurrence of the first annulus is validated by analysis of presumed daily growth increments. Subsequent annulus deposition is homogenous between individuals and allows general guidelines to be derived for interpreting the age of boarfish using their otoliths.

Description: Kim, D., Yang, E. J., Kim, K. H., Shin, C-W., Park, J., Yoo, S., and Hyun, J-H. 2012. Impact of an anticyclonic eddy on the summer nutrient and chlorophyll a distributions in the Ulleung Basin, East Sea (Japan Sea). – ICES Journal of Marine Science, 69: 23–29. The impact of the anticyclonic Ulleung Warm Eddy (UWE) on the vertical distributions of nutrient and chlorophyll a (Chl a ) concentrations in the Ulleung Basin (UB) was investigated during the contrasting summers of 2005 and 2007. The physical structure of the water column was characterized by an intrathermocline eddy (ITE) in 2005, whereas the UWE remained distant from the sampling transect in 2007. Water column structures appeared to be highly stratified, and nutrients in the surface waters were totally depleted at all stations. In 2005, an exceptionally high concentration of Chl a (5.5 mg m –3 ) was measured below the surface mixed layer in the eddy core (station D3), and values of ~2.5 mg m –3 were observed at the eddy edge (stations D2 and D4). Formation of an ITE efficiently mixed surface and deep-ocean waters, the latter supplying sufficient nutrients to generate an extremely high concentration of Chl a at the base of the subsurface layer. Overall, the results indicated that the anticyclonic UWE plays a key ecological role in supporting substantial phytoplankton biomass in the nutrient-depleted surface waters in summer and maintaining high benthic mineralization in the deep-sea sediments of the UB.

Description: Franchini, P., Sola, L., Crosetti, D., Milana, V., and Rossi, A. R. 2012. Low levels of population genetic structure in the gilthead sea bream, Sparus aurata , along the coast of Italy. – ICES Journal of Marine Science, 69: 41–50. The gilthead sea bream, Sparus aurata , is a coastal, commercially important fish. Contrasting results concerning the genetic structure of the species at different geographic scales have been reported. Here, an investigation is made into the population genetic structure of S. aurata along the coast of Italy, using samples analysed previously and material from new sampling sites (12) and using different microsatellite loci (10). One sample from the eastern Atlantic and three temporal replicates from one site were also included. The presence of a weak (overall F ST = 0.0072), but significant, genetic population subdivision was detected by F -statistics. Temporal replicates indicate genetic data consistency over time. Isolation by distance between the Atlantic and the coast of Italy is suggested by a Mantel test. The distributional pattern of genetic variance obtained by analysis of molecular variation reflects the geographic sampling areas, but is only partially congruent with the results obtained with fewer sites and loci. The dispersal of passive eggs/larvae by the main currents appears to contribute to shaping the gene flow. Given the intensity of sea bream aquaculture activities in Italy, the possibility that aquaculture may have partially contributed to the population genetic pattern detected cannot be excluded.

Description: Charrier, F., Mazel, V., Caraguel, J-M., Abdallah, Y., Le Gurun, L. L., Legault, A., and Laffaille, P. 2012. Escapement of silver-phase European eels, Anguilla anguilla , determined from fishing activities in a Mediterranean lagoon (Or, France). – ICES Journal of Marine Science, 69: 30–33. Escapement of silver eels from a Mediterranean lagoon was estimated by a capture–tagging–recapture and automated tag-reading study. The population of silver-phase eels in the lagoon was estimated to be 13.2 kg ha –1 , with an escapement rate from the commercial fishery of 76.8%.

Description: Jennings, S., and Lee, J. 2012. Defining fishing grounds with vessel monitoring system data. – ICES Journal of Marine Science, 69: 51–63. Methods for defining fishing grounds to support marine spatial planning and management are developed, applied, and compared. The methods are broadly applicable and repeatable because they use vessel monitoring system (VMS) data that are archived and increasingly accessible. For several fleets at regional and national scales, an attempt is made to assess how the choice of criteria for defining grounds influences (i) size, shape, and location, (ii) overlap among grounds, and (iii) the extent to which annual and multi-annual patterns of fishing activity describe grounds used seasonally or by individual vessels. The results show that grounds defined by excluding infrequently fished margins (areas with 〈10% of total fishing activity) are typically 50% smaller than total fished area. However, landings weight or value (LWV) per unit activity can be higher at the margins, with 10% of activity usually accounting for 10–20% of LWV. The removal of fishing activity in the margins, as a consequence of regulation or fleet behaviour, would lead to disproportionately greater reductions in interactions with other fisheries, sectors, and the environment. Accessible high-resolution information on the "anatomy" of all fishing grounds would better inform debates on the allocation and the use of marine space and the integration of fisheries and environmental management.

Description: Bentley, N., Kendrick, T. H., Starr, P. J., and Breen, P. A. 2012. Influence plots and metrics: tools for better understanding fisheries catch-per-unit-effort standardizations. – ICES Journal of Marine Science, 69: 84–88. Standardization of catch per unit effort using generalized linear models (GLMs) is a common procedure that attempts to remove the confounding effects of variables other than abundance. Simple plots and metrics are described to assist understanding the standardization effects of explanatory variables included in GLMs, illustrated with an example based on New Zealand trevally ( Caranx lutescens ) data.

Description: Aldrin, M., Mortensen, B., Storvik, G., Nedreaas, K., Aglen, A., and Aanes, S. 2012. Improving management decisions by predicting fish bycatch in the Barents Sea shrimp fishery. – ICES Journal of Marine Science, 69: 64–74. When the bycatch of juvenile fish within the Barents Sea shrimp fishery is too large, the area is closed to fishing for a certain period. Bycatch is estimated from sampled trawl hauls, for which the shrimp yield is recorded, along with the total number of various bycatch fish species. At present, bycatch estimation is based on a simple estimator, the sum of the number of fish caught within the area of interest within a small time window, divided by the corresponding shrimp yield (in weight). No historical data are used. A model-based estimation is proposed in which spatio-temporal models are constructed for the variation in both the yield of shrimp and the amount of bycatch in space and time. The main effects are described through generalized additive models, and local dependence structures are specified through correlated random effects. Model estimation includes historical and recent data. Experiments with both simulated and real data show that the model-based estimator outperforms the present simple estimator when a low or moderate number of samples (e.g. 〈20) is available, whereas the two estimators are equally good when the number of samples is high.

Description: Jiao, Y., Smith, E. P., O'Reilly, R., and Orth, D. J. 2012. Modelling non-stationary natural mortality in catch-at-age models. – ICES Journal of Marine Science, 69: 105–118. Non-stationarity in the natural mortality of many species has been discussed among research scientists, but no generally applicable models/methods have been developed where a statistical catch-at-age (SCA) model framework is used. Using the Atlantic weakfish ( Cynoscion regalis ) fishery as an example, several SCA models are developed to assess the population dynamics, then compared. Models used included (i) an SCA with constant natural mortality, (ii) an SCA with unknown natural mortality, but with a hierarchical prior distribution from a mixture of distributions based on life-history information, (iii) an SCA with age-specific unknown natural mortality, (iv) an SCA with time-varying natural mortality, following a random-walk process, and (v) an SCA with age-specific time-varying natural mortality. The last two models imply that the population dynamics are not stationary. A Bayesian approach was used to estimate parameters, and performance of the models was compared through goodness-of-fit and the retrospective patterns of the models. A simulation study was then conducted to test the uncertainty resulting from model selection, the efficiency of using the best model selected based on deviance information criterion, and whether changes in natural mortality could be detected. An SCA with time-varying natural mortality, following a random-walk process, is proposed for the example fishery here. The estimated non-stationary temporal patterns in natural mortality were linked further to climate–ocean oscillation indices, to diagnose possible mechanisms/linkages to these temporal variations in natural mortality.

Description: Juntunen, T., Vanhatalo, J., Peltonen, H., and Mäntyniemi, S. 2012. Bayesian spatial multispecies modelling to assess pelagic fish stocks from acoustic- and trawl-survey data. – ICES Journal of Marine Science, 69: 95–104. A Bayesian spatial model was constructed to estimate the abundance of multiple fish species in a pelagic environment. Acoustic- and trawl-survey data were combined with environmental data to predict the spatial distribution of (i) the acoustic backscattering of fish, (ii) the relative proportion of each species, and (iii) their mean length in the Gulf of Finland in the northeastern Baltic Sea. By combining the three spatial model layers, the spatial distribution of the biomass of each species was estimated. The model consists of a linear predictor on environmental variables and a spatial random effect given by a Gaussian process. A Bayesian approach is a natural choice for the task because it provides a theoretically justified means of summarizing the uncertainties from various model layers. In the study area, three species dominate pelagic waters: sprat ( Sprattus sprattus ), herring ( Clupea harengus ), and three-spined stickleback ( Gasterosteus aculeatus ). Results are presented for each model layer and for estimated total biomass for each species in 2 x 2 km lattices. The posterior mean and central 95% credible intervals of total biomass were sprat 45.7 kt (27.7–71.6), herring 24.6 kt (9.7–41.3), and three-spined stickleback 1.9 kt (0.9–3.2).

Description: Smith, W. K., and Solow, A. R. 2012. Missing and presumed lost: extinction in the ocean and its inference. – ICES Journal of Marine Science, 69: 89–94. The number of modern extinctions in the ocean is unknown. The actual demise of the last individual of a species is essentially unobservable, so extinction can only be inferred. Statistical methods are described for inferring extinction from sighting records, species–area considerations, and taxonomic samples collected at two different times. The methods are illustrated using a variety of real datasets, including a sighting record of the Caribbean monk seal and results from three surveys of benthic invertebrates.

Description: Delavenne, J., Metcalfe, K., Smith, R. J., Vaz, S., Martin, C. S., Dupuis, L., Coppin, F., and Carpentier, A. 2012. Systematic conservation planning in the eastern English Channel: comparing the Marxan and Zonation decision-support tools. – ICES Journal of Marine Science, 69: 75–83. The systematic conservation approach is now commonly used for the design of efficient marine protected area (MPA) networks, and identifying these priority areas often involves using specific conservation-planning software. Several such software programmes have been developed in recent years, each differing in the underlying algorithms used. Here, an investigation is made into whether the choice of software influences the location of priority areas by comparing outputs from Marxan and Zonation, two widely used conservation-planning, decision-support tools. Using biological and socio-economic data from the eastern English Channel, outputs are compared and it is shown that the two software packages identified similar sets of priority areas, although the relatively wide distribution of habitat types and species considered offered much flexibility. Moreover, the similarity increased with increasing spatial constraint, especially when using real-world cost data, suggesting that the choice of cost metric has a greater influence on conservation-planning analyses than the choice of software. However, Marxan generally produced more efficient results and Zonation produced results with greater connectivity, so the most appropriate software package will depend on the overall goals of the MPA planning process.

Description: Andersen, B. S., Ulrich, C., Eigaard, O. R., and Christensen, A-S. 2012. Short-term choice behaviour in a mixed fishery: investigating métier selection in the Danish gillnet fishery. – ICES Journal of Marine Science, 69: 131–143. The study presents a short-term effort allocation modelling approach based on a discrete choice random utility model combined with a survey questionnaire to examine the selection of métiers (a combination of fishing area and target species) in the Danish North Sea gillnet fishery. Key decision variables were identified from the survey questionnaire, and relevant proxies for the decision function were identified based on available landings and effort information. Additional variables from the survey questionnaire were further used to validate and verify the outcome of the choice model. Commercial fishers in a mixed fishery make use of a number of decision variables used previously in the literature, but also a number of decision parameters rarely explicitly accounted for, such as price, weather, and management regulation. The seasonal availability of individual target species and within-year changes in monthly catch ration were the main explanatory drivers, but gillnetters were also responsive to information on the whole fishery, fish prices, and distance travelled to fishing grounds. Heterogeneous responses were evident from geographic differences in home harbour, which underpins the need to understand alternative fishing strategies among individual gillnetters better.

Description: Calise, L., and Knutsen, T. 2012. Multifrequency target strength of northern krill ( Meganyctiphanes norvegica ) swimming horizontally. – ICES Journal of Marine Science, 69: 119–130. Multifrequency acoustic measurements on ex situ horizontally swimming krill were made in a novel experimental setting. An ensemble of northern krill ( Meganyctiphanes norvegica ) was introduced to a large enclosure (a mesocosm), and acoustic backscatter was sampled using a multifrequency (70, 120, and 200 kHz) echosounder (Simrad EK60). Two submerged lamps were placed at opposite sides of the mesocosm and switched on and off to induce the krill, by light attraction, to swim horizontally through the acoustic beams. By tracking echoes, animal displacement, swimming speed, and target strength ( TS ) by frequency were estimated. The dominant and secondary modes of the total-length distribution were 21.8 ± 3.0 and 27.8 ± 2.7 mm, respectively. Although krill orientation was assumed stable and the ping rate was high, the range and inter-ping variability of the average TS values were large, decreasing and increasing with frequency, respectively. The overall TS frequency response observed and concurrent measurements at 120 and 200 kHz confirm the theoretical expectation that the acoustic backscatter from the investigated organisms were confined to the Rayleigh and Geometric scattering regions, a finding that might both aid acoustic identification and size-group separation of in situ northern krill.

Description: Glover, K. A., Skaala, Ø., Limborg, M., Kvamme, C., and Torstensen, E. Microsatellite DNA reveals population genetic differentiation among sprat ( Sprattus sprattus ) sampled throughout the Northeast Atlantic, including Norwegian fjords. – ICES Journal of Marine Science, 68: 2145–2151. Sprat ( Sprattus sprattus ), small pelagic shoaling fish, were sampled from the Celtic, North, and Baltic seas, and 10 Norwegian fjords. Significant overall genetic differentiation was observed among samples when analysed with eight microsatellite DNA loci (Global F ST = 0.0065, p 〈 0.0001). The greatest genetic differences were observed between the Baltic and all other samples (largest pairwise F ST = 0.043, p 〈 0.0001). No significant genetic differentiation was observed between a sample from the Celtic Sea (CEL) and the North Sea (NSEA; F ST = 0.001, p = 0.16), but variable levels of genetic differentiation were observed among samples collected from Norwegian fjords (pairwise F ST ranging from 0 to 0.0096, most non-significant). All fjord samples were significantly differentiated to NSEA and CEL samples. Further, all fjord samples displayed reduced allelic richness compared with NSEA and CEL samples. Clearly, sprat display population genetic differentiation throughout the Northeast Atlantic, and there may be limited connectivity between Norwegian fjord and sea-going populations.

Description: Mahévas, S., Vermard, Y., Hutton, T., Iriondo, A., Jadaud, A., Maravelias, C. D., Punzón, A., Sacchi, J., Tidd, A., Tsitsika, E., Marchal, P., Goascoz, N., Mortreux, S., and Roos, D. 2011. An investigation of human vs. technology-induced variation in catchability for a selection of European fishing fleets. – ICES Journal of Marine Science, 68: 2252–2263. The impact of the fishing effort exerted by a vessel on a population depends on catchability, which depends on population accessibility and fishing power. The work investigated whether the variation in fishing power could be the result of the technical characteristics of a vessel and/or its gear or whether it is a reflection of inter-vessel differences not accounted for by the technical attributes. These inter-vessel differences could be indicative of a skipper/crew experience effect. To improve understanding of the relationships, landings per unit effort (lpue) from logbooks and technical information on vessels and gears (collected during interviews) were used to identify variables that explained variations in fishing power. The analysis was undertaken by applying a combination of generalized additive models and generalized linear models to data from several European fleets. The study highlights the fact that taking into account information that is not routinely collected, e.g. length of headline, weight of otter boards, or type of groundrope, will significantly improve the modelled relationships between lpue and the variables that measure relative fishing power. The magnitude of the skipper/crew experience effect was weaker than the technical effect of the vessel and/or its gear.

Description: Attwood, C. G., Petersen, S. L., and Kerwath, S. E. 2011. Bycatch in South Africa's inshore trawl fishery as determined from observer records. – ICES Journal of Marine Science, 68: 2163–2174. Ship-based observer data were analysed to describe the volume, composition, utilization, and size structure of catches made by South Africa's inshore trawlers. The sampling rate was 3.5% of all trawls, including unsorted and discard samples. In all, 137 nominal species were recorded. Analysis of species composition separated the trawling grounds into seven areas, providing a framework for stratifying the ground for catch estimation and for selection of representative areas for conservation. The target species, Merluccius capensis and Austroglossus pectoralis , made up 58% of the pre-discard catch. Trachurus trachurus , Pterogymnus laniarius , Raja spp., and Chelidonichthys spp. constituted another 23%. Pre-discard catch volumes of the entire fleet were estimated. The average annual pre-discard catch of M. capensis and A. pectoralis was 9653 and 504 t, respectively, closely matching landing statistics. Argyrosomus inodorus , Rhabdosargus globiceps , Argyrozona argyrozona , and Atractoscion aequidens averaged 294, 230, 107, and 83 t annually, respectively, indicating significant overlap with the handline fishery for A. inodorus and A. argyrozona . A comparison of species composition in unsorted and discard samples revealed the species being preferentially retained. Argyrosomus inodorus and A. aequidens were trawled mainly below their size at maturity. Management needs to consider other species when determining catch or effort limits and area restrictions.

Description: Aanes, S., Nedreaas, K., and Ulvatn, S. 2011. Estimation of total retained catch based on frequency of fishing trips, inspections at sea, transhipment, and VMS data. – ICES Journal of Marine Science, 68: 1598–1605. The satellite-based vessel monitoring system in the Norwegian Economic Zone provides detailed information about individual trips by vessels. Vessel sizes are available through official registries, and the storage capacity for fish is estimated using the established conversion factors as a function of the vessel's gross registered tonnage. Scientists have had access to the database of both transport and fishing vessels, with records for individual trips, in addition to information about the total round weight (whole fish) of cod and haddock for trips inspected by the coastguard. The analysis assumes that trips with complete documentation of the fish on board are a random sample, so allowing estimation of the mean amount of both cod and haddock per trip, and annual totals give the number of trips per vessel annually. ICES has accepted this methodology for estimating illegal, unregulated, and unreported (IUU) catches, which has resulted in 15 000–166 000 t (3–35%) being added to the officially reported landings of Northeast Arctic cod during the years 2002–2008. IUU landings have decreased in recent years, but are so important for assessment and management that estimates continue to be made annually.

Description: Kindt-Larsen, L., Kirkegaard, E., and Dalskov, J. 2011. Fully documented fishery: a tool to support a catch quota management system. – ICES Journal of Marine Science, 68: 1606–1610. The Danish Government has proposed a catch quota management system (CQMS) in which fishers are obliged to report their total catches, including discards and landings, and both are counted against the formal total allowable catch (TAC). The success of a CQMS requires appropriate documentation to verify the total catch, the validity of scientific advice, and the implementation of the TACs through national catch quotas. A remote electronic monitoring (EM) system, providing full documentation of fishing operations and catches, was tested on six Danish fishing vessels operating under a CQMS for cod ( Gadus morhua ). The results showed that the EM system could provide the documentation required to support the CQMS and that it was an incentive for the participating fishers to avoid discarding cod. Changing from landings to total catch quotas would not affect the scientific-advisory processes of the International Council for the Exploration of the Sea (ICES), but it could have notable consequences for the allocation of TACs between countries.

Description: Shephard, S., Gerritsen, H. D., Kaiser, M. J., Truszkowska, H. S., and Reid, D. G. 2011. Fishing and environment drive spatial heterogeneity in Celtic Sea fish community size structure. – ICES Journal of Marine Science, 68: 2106–2113. The Large Fish Indicator (LFI) is a univariate size-based indicator of fish community state that has been selected to support the OSPAR fish community Ecological Quality Objective (EcoQO). To operate this EcoQO, a survey-based LFI for each OSPAR region needs to be developed. However, fish communities in these regions are spatially heterogeneous, and there is evidence of within-region spatial variation in the LFI that could confound an overall indicator series. For Celtic Sea trawl-survey sites, spline correlograms indicate positive spatial autocorrelation at a similar range (~40 km) for the LFI and for fishing effort (h year –1 ) from vessel monitoring systems. Statistical models reveal a strong negative effect on annual LFI by site of fishing effort within a radius of 40 km. There was a weak effect of fishing within 20 km and no effect at 10 km. LFI also varied significantly with substratum and with local fish community composition identified by a resemblance matrix derived from the survey data. Finally, there was a weak effect of survey year on LFI. Spatial stratification of LFI calculations may be necessary when developing size-based indicators for OSPAR or Marine Strategy Framework Directive regions.

Description: Petitgas, P., Doray, M., Massé, J., and Grellier, P. 2011. Spatially explicit estimation of fish length histograms, with application to anchovy habitats in the Bay of Biscay. – ICES Journal of Marine Science, 68: 2086–2095. Fish length frequency histograms from research surveys are of prime importance for identifying habitats of different life stages, as well as for stock assessment. However, no method has thus far been available for mapping these histograms as spatially varying curves. Here, a procedure is applied to map spatially connected curves, and detail is given on how it can be applied to map the length frequency histograms. At each sample location, a fish length frequency histogram is given as a vector of non-independent values. The histogram is first modelled as a polynomial expansion on the basis of orthogonal polynomials. Then, the polynomial coefficients are mapped by co-kriging, after fitting a model of co-regionalization. The length frequency map is finally derived by linearly combining maps of polynomial coefficients. An estimation variance associated with the map is also derived. Maps of anchovy length distributions are produced by applying the method to midwater trawl length data from the PELGAS acoustic surveys in the Bay of Biscay. This novel approach extends the application of kriging techniques to curves or functions, opening new perspectives for mapping more complex information than just the values of fish density.

Description: Hedger, R. D., Uglem, I., Thorstad, E. B., Finstad, B., Chittenden, C. M., Arechavala-Lopez, P., Jensen, A. J., Nilsen, R., and Økland, F. 2011. Behaviour of Atlantic cod, a marine fish predator, during Atlantic salmon post-smolt migration. – ICES Journal of Marine Science, 68: 2152–2162. Acoustic telemetry was used to determine the behavioural strategies of Atlantic cod ( Gadus morhua ) during Atlantic salmon ( Salmo salar ) post-smolt migration within a Norwegian fjord (Eresfjord). In all, 38 adult cod captured in the inner fjord were tagged with acoustic transmitters in 2008 and 2009, and their behaviour was determined using a fixed hydrophone array. Cod tended to aggregate in the innermost part of the fjord, occupying distinct demersal home territories, showing horizontal movements consistent with foraging. Tidal influences were not observed; cod spent more time near the surface at night. Cod behaviour during peak post-smolt migration differed from that before and after migration. First, cod tended to have more-focused spatial distributions during peak post-smolt migration, consistent with them not having to forage so far when prey were available in abundance. Second, some half the cod were detected nocturnally (but rarely during daylight) near the river mouth during peak post-smolt migration, consistent with them feeding on nocturnally migrating post-smolts. Third, cod were more common near the surface, consistent with them feeding on post-smolts migrating through near-surface waters. These patterns, however, were not shown by all the cod, suggesting that this opportunistic feeder was also preying on other species.

Description: Miller, E. F., Pondella II, D. J., Beck, D. S., and Herbinson, K. T. 2011. Decadal-scale changes in southern California sciaenids under different levels of harvesting pressure. – ICES Journal of Marine Science, 68: 2123–2133. A unique 38-year time-series of power-plant entrapment data collected across ~170 km of the southern California coastline was examined to describe the decadal-scale trends in common Southern California Bight sciaenid abundance in relation to oceanographic conditions. Adult catches for five of seven species declined at differing rates and severity. Declines of up to 94% were detected in historically common species such as Genyonemus lineatus , whereas historically less abundant species have increased dramatically, e.g. Umbrina roncador (2626%). Over time, the entrapped community became increasingly influenced by species with more southerly distributions, indicated by a significant decline in the average latitudinal midpoint of the community. This shift was significantly related to rising ocean temperature and took place in the early to mid-1980s. The observed species-specific abundance changes in all species except Atractoscion nobilis were significantly correlated with sea surface temperature, nearshore plankton volumetric biomass, G. lineatus or Seriphus politus nearshore larval density, or a combination of these. Patterns in A. nobilis abundance were the most isolated, likely reflecting its standing as an intensively fished species, unlike the other six species evaluated. The consistent relationship with environmental indices strongly supported the notion of a faunal shift driven by bottom-up forcing.

Description: Mikkonen, J., Keinänen, M., Casini, M., Pönni, J., and Vuorinen, P. J. 2011. Relationships between fish stock changes in the Baltic Sea and the M74 syndrome, a reproductive disorder of Atlantic salmon ( Salmo salar ). – ICES Journal of Marine Science, 68: 2134–2144. The M74 syndrome of Baltic salmon ( Salmo salar ), which appears as increased yolk-sac fry mortality (YSFM), impairs the reproduction of salmon stocks. Changes in the prey stocks of Baltic salmon in its two feeding areas, the southern Baltic Proper (BPr), where sprat ( Sprattus sprattus ) was the main prey species during the high incidence of M74, and the Bothnian Sea, where herring ( Clupea harengus ) is the dominant species, were analysed in relation to salmon growth and size and in relation to the incidence of M74. The high condition factor (CF 〉 1.05) of prespawning salmon predicted high YSFM. From the various stock factors of sprat and herring in the southern BPr, the biomass of sprat had the strongest positive relationships with the CF of prespawning salmon, and the total prey biomass with YSFM. It is concluded that the ample but unbalanced food resources for salmon in the BPr, primarily sprat, induce M74. By reducing the fishing pressure on cod ( Gadus morhua ) and by more effectively managing the sprat fishery in years when the cod stock is weak, the incidence of the M74 syndrome could be reduced and even prevented.

Description: Levesque, J. C. 2011. Commercial fisheries in the northwestern Gulf of Mexico: possible implications for conservation management at the Flower Garden Banks National Marine Sanctuary. – ICES Journal of Marine Science, 68: 2175–2190. Marine resource managers designate marine protected areas (MPAs) to conserve, protect, and enhance fragile marine resources. A form of MPAs sometimes used by resource managers in the United States is a national marine sanctuary (NMS), and for all MPAs, managers need to use updated information during sanctuary management plan reviews (MPRs). In 2006, the Flower Garden Banks NMS (FGBNMS) began its first MPR by conducting public hearings and soliciting comments. Some 66% of comments were about the potential impacts fisheries posed to the sanctuary, so a description of commercial fishery activity in the NW Gulf of Mexico can help guide resource managers make sound, informed decisions. Despite limitations on data and knowledge of fishing effort spatially for the FGBNMS, commercial landings vary by Gulf state, area, and fishing gear, with most landings from the Louisiana and Texas coasts taken with trawls and nets. The main species landed from the NW Gulf of Mexico are shrimp, yellowfin tuna, and red snapper. Some conservation measures proposed for the FGBNMS will likely impact some commercial fisheries (hook and line, bottom longline), but not others (otter trawl, pelagic longline).

Description: Lonergan, M., Duck, C. D., Thompson, D., Moss, S., and McConnell, B. 2011. British grey seal ( Halichoerus grypus ) abundance in 2008: an assessment based on aerial counts and satellite telemetry. – ICES Journal of Marine Science, 68: 2201–2209. Recent estimates of the total size of the British grey seal population have been based on fitting age-structured models to estimates of pup production. The estimates were sensitive to whether density-dependence was considered to act on fecundity or pup survival. This study provides an alternative estimate for abundance in 2008: 91 800 animals (95% confidence interval, CI , 78 400–109 900). The estimate is consistent with the results of existing models where population density influences pup survival. It suggests that reductions in fecundity are unlikely to have been the cause of the recent slowing of the rate of growth of the population. The estimate presented is based on aerial surveys of the entire Scottish coast and the east coast of England. The surveys were carried out in August of 2007–2009 and restricted to the 2 h each side of daylight low water. Data from 107 electronic tags deployed between 1995 and 2008 were used to estimate the proportion of animals hauled out during the surveys. Overall, the animals hauled out for 31% (95% CI 15–50%) of the survey windows. No significant effects on the proportion of animals hauled out were detected from year, location, age, sex, temperature, rainfall, or the timing of low tide.

Description: McGrath, S. P., Broadhurst, M. K., Butcher, P. A., and Cairns, S. C. 2011. Fate of three Australian teleosts after ingesting conventional and modified stainless- and carbon-steel hooks. – ICES Journal of Marine Science, 68: 2114–2122. In response to concerns over the fate of three Australian teleosts (mulloway, Argyrosomus japonicus , yellowfin bream, Acanthopagrus australis , and snapper, Pagrus auratus ) released with ingested recreational hooks, experiments were carried out to determine whether ejection could be promoted via different wire materials and/or their modification. Between 108 and 114 fish of each species were angled and allowed to ingest conventional or modified (with notches to reduce wire diameter by ~20%) J-hooks (~250 mm 2 ) made from three materials (stainless steel and nickel-plated and red-lacquer carbon steel), before being released into tanks and monitored with control fish for up to 61 d. Total mortalities were 35, 24, and 25% for mulloway (over 61 d), yellowfin bream (over 35 d), and snapper (over 41 d), respectively. Of the survivors, 30, 61, and 77%, respectively, ejected their hooks (and only one hook-ejected fish died). For yellowfin bream, hook ejection (and hence survival) was positively correlated with total length, and hook oxidation was the key predictor of ejection from mulloway and snapper, which could be promoted by selecting carbon-steel designs with narrow wire diameters and minimal protective coating. The choice of coating might also be important, with relatively greater mortality among mulloway and yellowfin bream that ingested nickel-plated hooks.

Description: Van Iseghem, S., Quillérou, E., Brigaudeau, C., Macher, C., Guyader, O., and Daurès, F. 2011. Ensuring representative economic data: survey data-collection methods in France for implementing the Common Fisheries Policy. – ICES Journal of Marine Science, 68: 1792–1799. Since 2001, Ifremer has implemented an economic data collection programme (EDCP) within the Data Collection Framework of the EU. It aims to obtain economic data from a sample of vessels representative of the entire French fishing fleet. This paper presents the strategies used for vessel sampling selection in the French EDCP and its implementation over several consecutive years. The approach is illustrated by the sampling plan for the fleet in the North Sea Channel Atlantic region. We show that the EDCP allows precise economic indicators such as gross revenue or fuel costs to be estimated for the whole fishing fleet, including small vessels (〈10 m), and consequently, it facilitates sound scientific advice regarding the Common Fisheries Policy. The apparent underestimation of landings by small vessels in official statistics is highlighted.

Description: Mathew, S. 2011. Fishery-dependent information and the ecosystem approach: what role can fishers and their knowledge play in developing countries? – ICES Journal of Marine Science, 68: 1805–1808. An ecosystem approach to fishery management is as much a mechanism to deal with the impact of fishing on targeted, associated, and dependent fish stocks, and on the habitat, as it is to deal with the impact of habitat degradation from natural and anthropogenic factors on fishing. In developing countries, often with little institutional capacity for generating timely and reliable information for managing fisheries, effective integration of the knowledge possessed by fishers and their communities regarding, for example, oceanographic, biological, economic, social, and cultural aspects can contribute to an ecosystem approach to fisheries. The challenge is to identify and validate such knowledge and to create policy and legal space to integrate it into management, also drawing upon good practice in industrialized countries. An attempt is made to identify such knowledge, to discuss its salient aspects, and to look at the conditions under which its practical value can be enhanced and integrated into formal fishery-management systems in developing countries.

Description: Blythe, J. N., da Silva, J. C. B., and Pineda. J. 2011. Nearshore, seasonally persistent fronts in sea surface temperature on Red Sea tropical reefs. – ICES Journal of Marine Science, 68: 1827–1832. Temperature variability was studied on tropical reefs off the coast of Saudi Arabia in the Red Sea using remote sensing from Aqua and Terra satellites. Cross-shore gradients in sea surface temperature (SST) were observed, including cold fronts (colder inshore) during winter and warm fronts (warmer inshore) during summer. Fronts persisted over synoptic and seasonal time-scales and had a periodic annual cycle over a 10-year time-series. Measurements of cross-shore SST variability were conducted at the scale of tens of kilometres, which encompassed temperature over shallow tropical reef complexes and the continental slope. Two tropical reefs that had similar reef geomorphology and offshore continental slope topography had identical cold fronts, although they were separated by 100 km along the Red Sea coast of Saudi Arabia. Satellite SST gradients across contours of topography of tropical reefs can be used as an index to flag areas potentially exposed to temperature stress.

Description: Kane, J. 2011. Multiyear variability of phytoplankton abundance in the Gulf of Maine. – ICES Journal of Marine Science, 68: 1833–1841. Significant interannual changes in phytoplankton abundance were identified in the Continuous Plankton Recorder time-series collected in the Gulf of Maine from 1961 to 2008. Abundance levels of nearly all the common taxa began to increase in 1990 and remained elevated through 2001. During that period, total numbers were above average throughout the year, with an unusual bloom in late summer. Multivariate analysis of abundance identified three consecutive multiyear periods of varying abundance levels: low to average from 1961 to 1989, above average or very high from 1990 to 2001, and below average thereafter, through 2008. Phytoplankton abundance patterns were closely aligned to the rising trends displayed by several of the common zooplankton taxa. The North Atlantic Oscillation was the only environmental variable examined that showed some association with time-series abundance trends of plankton. The index was primarily positive in the 1990s, which would favour the propagation of warm, nutrient-rich slope water into the region. Perhaps the increased influx of this water, along with feedback enrichment from abundant zooplankton stocks and reduced top-down control by the relative scarcity of the dominant copepod Calanus finmarchicus , combined with a low salinity to make the 1990s a unique decade for plankton change in the Gulf of Maine.

Description: Malyshev, A., and Quijón, P. A. 2011. Disruption of essential habitat by a coastal invader: new evidence of the effects of green crabs on eelgrass beds. – ICES Journal of Marine Science, 68: 1852–1856. Eelgrass ( Zostera marina ) beds have been declining in Atlantic Canada and elsewhere, partly as a result of sediment disruption and direct feeding/cutting of basal meristems by the green crab ( Carcinus maenas ). Green crabs are detrimental to eelgrass beds, and field and laboratory experiments have confirmed that the deleterious role of this invasive species is mediated by at least two mechanisms, depending on the size/age of the crabs: uprooting by adults and grazing by juveniles. Eelgrass uprooting and grazing by green crabs are likely to contribute to further declines or a lack of recovery of eelgrass beds.

Description: Reese, D. C., O'Malley, R. T., Brodeur, R. D., and Churnside, J. H. 2011. Epipelagic fish distributions in relation to thermal fronts in a coastal upwelling system using high-resolution remote-sensing techniques. – ICES Journal of Marine Science, 68: 1865–1874. Coastal upwelling systems are characterized by substantial spatial and temporal variability with respect to surface conditions, with fauna patchily distributed and high abundances in localized areas. Examining habitat associations on finer spatial scales than previous studies have been able to achieve would advance the understanding of important marine coastal ecosystems. This study evaluates the spatial and temporal relationships of single fish and fish schools with sea surface temperature (SST) fronts in the northern California Current upwelling system, using lidar (light detection and ranging) from an aircraft to sample surface waters over the continental shelf. High-resolution data were collected on the distribution of surface nekton and SST, then the locations of fish were analysed with respect to their proximity to SST fronts using GIS spatial analyses. Both fish schools and solitary fish were located significantly closer to fronts than would be expected by chance. The association of fish to fronts varied with the progression of the upwelling season such that fish associated less with fronts under stronger upwelling conditions. The relationships observed indicate the importance of thermal features to fish as a habitat component in a variable upwelling environment and have implications for management and conservation.

Description: Kopf, R. K., Davie, P. S., Bromhead, D., and Pepperell, J. G. 2011. Age and growth of striped marlin ( Kajikia audax ) in the Southwest Pacific Ocean. – ICES Journal of Marine Science, 68: 1884–1895. This study describes the first validated model of age and growth developed for striped marlin ( Kajikia audax ). Daily periodicity of otolith microincrements was corroborated by back-calculated hatch dates that matched the known spawning season in the Southwest Pacific Ocean (SWPO). Yearly annulus formation in fin-spine sections was corroborated by daily otolith microincrements and by a marginal increment analysis. Ages of females ranged from 140 d to 8.5 years in fish between 990 mm and 2872 mm lower-jaw fork length (LJFL), and ages of males from 130 d to 7.0 years in fish between 1120 mm and 2540 mm LJFL. Sex-specific differences in growth were significant, with females growing to a larger asymptotic size and greater age than males. An instantaneous growth rate of 3.1 mm d –1 at 6 months and an estimated length of 1422–1674 mm LJFL by age 1 year makes this species among the fastest growing bony fish. Implications of these findings are discussed in relation to commercial longline and recreational fisheries management of striped marlin in the SWPO and in relation to the biology of pelagic fish growth.

Description: Magnussen, E. 2011. Food and feeding habits of cod ( Gadus morhua ) on the Faroe Bank. – ICES Journal of Marine Science, 68: 1909–1917. Data from ten bottom surveys on the Faroe Bank during the years 1994–1998 are used to describe the feeding habits of cod on the Faroe Bank. Cod are clearly omnivorous in their diet. Overall, fish were found in 82% of the stomachs, accounting for 59% of the food by weight, but just 35% of the food items by number. Of the fish, lesser sandeel was the most common, making up 78% of the fish biomass consumed. Cannibalism was practically non-existent. In some years, the squid Loligo forbesi formed an important component of the diet, was the main food and identified in up to 64% of the stomachs, and constituting 60% by weight of the diet; in other years, it was a negligible part. Crustaceans were found in 48% of the stomachs, accounting for 16% by weight but as much as 44% by numbers. The diet of cod shifts ontogenetically, with stomach fullness greater and nutrient quality of prey higher for cod 〈70 cm.

Description: Uglem, I., Berg, M., Varne, R., Nilsen, R., Mork, J., and Bjørn, P. A. 2011. Discrimination of wild and farmed Atlantic cod ( Gadus morhua ) based on morphology and scale-circuli pattern. – ICES Journal of Marine Science, 68: 1928–1936. To evaluate the spatio–temporal distribution and ecological impacts of escaped farmed Atlantic cod ( Gadus morhua ), it is necessary that escapees can be traced in the wild. To do this, simple, reliable, and fast methods for determining the origin of cod are required. The aim of this proof-of-concept study was to evaluate whether simple analyses of scales and body morphology can distinguish between wild and farmed cod. Digital images of fish and scales from adult cod from two farms, and wild cod caught near these farms, were analysed by computer-based image analyses. By combining mean breadth of circuli and length-adjusted scale radius in a discriminant analysis, 86 and 80% of wild and farmed fish, respectively, were correctly classified. Moreover, using three simple morphometric measures representing dorsal fin size, neck curvature, and length of lower jaw, 100 and 95% of wild and farmed cod, respectively, were classified correctly. To validate these discrimination methods further, an expanded analysis of additional farmed and wild cod populations is required. The results pave the way for the development of a reliable and standardized methodology for classification of the origin of cod caught in the wild.

Description: Przeslawski, R., Currie, D. R., Sorokin, S. J., Ward. T. M., Althaus, F., and Williams, A. 2011. Utility of a spatial habitat classification system as a surrogate of marine benthic community structure for the Australian margin. – ICES Journal of Marine Science, 68: 1954–1962. This study tests whether a continental-scale classification of Australian benthic habitats (termed "seascapes") and the interpolated environmental data from which they are derived are useful as abiotic surrogates of biodiversity at a local [tens of kilometres, Great Australian Bight (GAB)] and regional scale [hundreds of kilometres, Western Australian (WA) margin]. Benthic invertebrate community structure is moderately associated with specific seascapes in both the GAB ( R = 0.418) and WA margin (excluding hard substrata, R = 0.375; all substrata, R = 0.313). Mud content, seafloor slope, and seafloor temperature are significantly correlated with invertebrate communities at both scales, with disturbance and primary production correlated with GAB communities. Seascapes are not consistently useful surrogates because the strength and significance of relationships between seascapes and community structure differs among seascapes, regions, and spatial scales. Nevertheless, a national system of seascapes is an appropriate surrogate for broad-scale benthic invertebrate community patterns when biological data are limited, provided the uncertainty is acknowledged and, where possible, an assessment made of each seascape's ability to differentiate biological communities. Further refinement of seascape derivations may include updated and additional environmental data (particularly for hard vs. soft substrata) and validation among biological datasets from a range of habitats and scales.

Description: Frie, A. K., Fagerheim, K-A., Hammill, M. O., Kapel, F. O., Lockyer, C., Stenson, G. B., Rosing-Asvid, A., and Svetochev, V. 2011. Error patterns in age estimation of harp seals ( Pagophilus groenlandicus ): results from a transatlantic, image-based, blind-reading experiment using known-age teeth. – ICES Journal of Marine Science, 68: 1942–1953. Blind readings of known-age samples are the ultimate quality control method for age estimates based on hard tissues. Unfortunately, this is often not feasible for many species because of the scarcity of known-age samples. Based on a unique collection of known-age teeth of harp seals (age range: 1–18 years), ageing errors were evaluated in relation to true age, reader experience, sex, and tooth format (images vs. originals). Bias was estimated by linear models fitted to deviations from true age, and precision was estimated as their residual standard error. Image-based blind readings of 98 tooth sections by 14 readers, representing different levels of experience, generally showed high accuracy and precision up to a seal age of ~8 years, followed by an increasingly negative bias and increased variance. Separate analyses were therefore conducted for young seals (1–7 years) and older seals. For young seals, moderate associations were found between reader experience and levels of bias, precision, and proportions of correct readings. For older seals, only precision levels showed a significant association with reader experience. Minor effects of sex and tooth format are unlikely to affect these main patterns. Observed errors, even for highly experienced readers, may affect important age-related parameters, emphasizing the importance of known-age calibration of the output from all readers.

Description: van der Kooij, J., Kupschus, S., and Scott, B. E. 2011. Delineating the habitat of demersal fish assemblages with acoustic seabed technologies. – ICES Journal of Marine Science, 68: 1973–1985. Habitats influence species distribution and, although the seabed is an important habitat factor for demersal species, traditional sampling methods often provide no practical solution to investigating the seabed over large areas. The ability of a multivariate method that utilizes single-beam acoustic seabed data combined with species composition data to define demersal fish habitats was tested. The best model explained 19.4% of the variance observed in the species data and was robust between years. Ten biotopes were identified, each containing species that, either alone or in combination with others, were indicative of that biotope. Using unclassified acoustic seabed data as explanatory variables, discrepancies between the numbers of acoustically distinct classes and species assemblages, as previously reported in the literature, were avoided, while utilizing their relationship with community structure. The study focused on the relationship between simultaneously recorded species composition and seabed data from fishing stations, but because continuous acoustic data along the survey tracks were available between stations, the model could be used to predict the spatial extent of the biotopes. Although the method was developed with the eventual aim of providing a meaningful foundation to the spatial management of mixed fisheries, it could also contribute to applications in spatial planning.

Description: Faunce, C. H., and Barbeaux, S. J. 2011. The frequency and quantity of Alaskan groundfish catcher-vessel landings made with and without an observer. – ICES Journal of Marine Science, 68: 1757–1763. The North Pacific Groundfish Observer Programme (NPGOP) is one of the largest on-board fishery-monitoring programmes in the world, and the data are used extensively for both in- and post-season management of fisheries. Within certain limits, Alaskan fishers determine when and where to carry observers. There may be an incentive to fish differently during observed trips because (i) observed trips carry higher costs than unobserved trips, and (ii) bycatch quanta for quota deduction are estimated by applying bycatch rates from observed trips to retained catches on unobserved trips. Such differences may be manifest through the skewed deployment of observers among fisheries, i.e. a deployment effect, and through unrepresentative activities by fishers when an observer is on board, i.e. an observer effect. Despite long-standing concerns expressed over the NPGOP's 40-year history, evidence of deployment and observer effects have been based largely on anecdotal information. In 2008, database changes allowed a comparison of industry landing reports for trips with and without an observer. A deployment effect was evidenced by significant deviations from the expected landing ratios between observed and unobserved trips, and linear mixed-effect models revealed differences in the landed weight and evidence for an observer effect within two of five fisheries examined.

Description: Kloser, R. J., Ryan, T. E., Macaulay, G. J., and Lewis, M. E. 2011. In situ measurements of target strength with optical and model verification: a case study for blue grenadier, Macruronus novaezelandiae . – ICES Journal of Marine Science, 68: 1986–1995. In situ measurements of target strength ( TS ) of isolated fish surrounding dense schools need to be representative of the schooling fish to calculate their echo-integrated biomass. Using synchronous optical and acoustic measurements from a pelagic fishing net, the standard length (81 cm, n = 128), tilt-angle (–9°), and net-disturbed in situ TS (–34.4 dB) of Australian Macruronus novaezelandiae (blue grenadier) were confirmed at depth. In situ drift experiments of assumed undisturbed but dispersed blue grenadier recorded a mean TS of –31.8 dB ( CI –33.1 to –30.9 dB) with attributed fish standard lengths of 83 cm (s.d. 7.5 cm) and weight 2.5 kg. Modelling the gasbladder showed that uncertainties in fish length, orientation, and gasbladder size could explain the differences observed. Blue grenadiers have negative buoyancy because the cavity size of their gasbladder is smaller than the volume of gas required for neutral buoyancy at depth. For the same species and length, New Zealand hoki weigh less and have smaller gasbladders than Australian blue grenadier, suggesting a conversion factor of 1.10 in length for comparative measurements. Net-attached acoustic and optical measurements indicate that model and drift in situ measurements are biased high by 2.9 and 1.0 dB, respectively. Net-attached acoustic and optical measurements are a cost-effective method of monitoring TS routinely at depth for changes in species length and weight.

Description: Garcia, S. M. 2011. Potential contribution of the Internet to a global community of practice for fishery management. – ICES Journal of Marine Science, 68: 1800–1804. Managing complex socio-ecological fishery systems, following an Ecosystem Approach to Fisheries, calls for a broad range of information covering many components of the system, intensified sharing of data and knowledge (to accelerate social learning and adaptive management), and a much tighter collaboration between disciplines and stakeholders. I argue that the time has come to establish one or more communities of practice ( sensu Wenger) and that the Internet could be used efficiently for this purpose, enhancing the co-evolution of science and decision-making. Important Internet resources exist and can be mobilized, but the contribution of fishery science is still too fragmented and that of the fishing industry is embryonic. This paper suggests a web infrastructure that would facilitate the needed change.

Description: Rihan, D., Graham, N., Reid, D. G., and Lordan, C. 2011. The provision of fishery information by ICES–WGFTFB to assessment working groups: use of information and lessons learned. – ICES Journal of Marine Science, 68: 1809–1814. ICES is now asked to provide advice that is more holistic in nature, including information on the influence and effects of human activities on the marine ecosystem. From a fishing-technology perspective, this includes information on how fishers respond and adapt to changes in regulatory frameworks, the impact of technology creep, ecosystem impacts, and changes in fleet dynamics. Recognizing the importance of this, in 2005, the ICES–Food and Agriculture Organization (FAO) Working Group on Fish Technology and Fish Behaviour (WGFTFB) began to collect data and information to support scientific advice on fisheries and ecosystem issues through a questionnaire circulated to its members. The information from the questionnaires was collated by the WGFTFB and submitted in the form of summary documents to various ICES assessment working groups. This paper describes the background to this initiative, the questionnaire structure, the type of information provided, and its utility.

Description: Lorance, P., Agnarsson, S., Damalas, D., des Clers, S., Figueiredo, I., Gil, J., and Trenkel, V. M. 2011. Using qualitative and quantitative stakeholder knowledge: examples from European deep-water fisheries. – ICES Journal of Marine Science, 68: 1815–1824. Stakeholder knowledge was collected through questionnaires and cognitive maps and used to summarize biological, environmental, technical, management, and socio-economic factors for several deep-water fisheries, identifying regional management issues and solutions. The questionnaires and cognitive maps revealed different technical, environmental, and management concerns in these fisheries. Dissatisfaction with management was more at an implementation than a conceptual level, because the existing management measures were mostly considered fit for purpose. Further, catch-and-effort data provided by the fishing industry were used to calculate standardized landings per unit effort. The results suggested different trends over time for three deep-water stocks exploited by the same fleet. The examples demonstrate how stakeholder involvement and use of qualitative knowledge and quantitative data might improve the management process and stock assessments when data are limited.

Description: Chandrapavan, A., Gardner, C., Green, B. S., Linnane, A., and Hobday, D. 2011. Improving marketability through translocation: a lobster case study from southern Australia. – ICES Journal of Marine Science, 68: 1842–1851. Translocation as a method to increase the value of less-marketable, deep-water southern rock lobster Jasus edwardsii was explored. First, variation in the commercially important shell colouration and body shape between deep- and shallow-water Tasmanian populations and among South Australian and Victorian populations was quantified. Deep-water J. edwardsii were pale in colour, with longer walking legs but less meat content than shallow-water, red-coloured J. edwardsii . Traits in body shape were variable among deep-water populations across the three states and between sexes in each population. Deep-water lobsters were then translocated to a shallow-water inshore reef to determine whether the observed variation in traits was plastic and whether translocation could be used to improve the quality of deep-water lobsters. Translocated lobsters were then monitored over a 14-month post-release period, and during this time, they changed from a pale/white colour to the more marketable red colour within a single moult. Plasticity was observed in tail morphology, but not in leg morphology. The translocation experiment was successful in transforming pale/white deep-water lobsters into red lobsters with higher market value in a phenotypic response to habitat manipulation. Translocation appears to have commercial application for exploiting natural plasticity in the market traits of lobsters to increase price.

Description: Xavier, J. C., Phillips, R. A., and Cherel, Y. 2011. Cephalopods in marine predator diet assessments: why identifying upper and lower beaks is important. – ICES Journal of Marine Science, 68: 1857–1864. Cephalopods are components of the diet of many predators worldwide. They are identified mainly using their chitinized upper and lower beaks, but because it has been assumed that the number of upper and lower beaks would be the same in predator diet samples, more effort has been put into creating keys for the lower beaks, which are more easily identifiable from morphology. A test is made of whether the number of upper and lower beaks differs in diet samples collected from a major cephalopod predator, the wandering albatross ( Diomedea exulans ), potential biases in the estimation of predator diets are assessed, and upper:lower beak ratios in published studies of other seabirds, seals, whales, and fish from different parts of the world reviewed. The ratio of upper to lower beaks in diet samples from wandering albatrosses varied greatly in a single year (from 69.6% more lower beaks to 59% more upper beaks), and between years (from 0.5 to 32.1% more upper beaks), and biases were greater for certain cephalopod species, resulting in underestimation of their relative importance. Future studies need to consider using both upper and lower beaks to improve the assessment of the contribution of different cephalopods to predator diets.

Description: Burt, J. A., Feary, D. A., Bauman, A. G., Usseglio, P., Cavalcante, G. H., and Sale, P. F. 2011. Biogeographic patterns of reef fish community structure in the northeastern Arabian Peninsula. – ICES Journal of Marine Science, 68: 1875–1883. This study provides the first large-scale comparison of reef-associated fish communities in the northeastern Arabian Peninsula, with 24 sites spanning 〉3000 km of coastline in the southern Persian Gulf, the western Gulf of Oman, and the northwestern Arabian Sea, each with its own unique environmental conditions. Multivariate analyses revealed three distinct community types that were represented mainly by sites within each major water body, with 〉70% dissimilarity in community structure between each. Persian Gulf communities had low species richness, abundance, and biomass of reef fish compared with the other subregions, with communities dominated by herbivores and generalist predators that had little association with live coral. Reef fish biomass in the Gulf of Oman and Arabian Sea was comparable, and communities were dominated by fish with moderate coral association. However, there were relatively more herbivores and larger fish in the Arabian Sea than in the Gulf of Oman, where communities were dominated by planktivores. Species richness was highest in the Arabian Sea when differences in abundance among regions were accounted for. The influence of distinct environmental and oceanographic conditions on reef fish community structure in each of these areas is discussed.

Description: Chouinard, P-M., and Dutil, J-D. 2011. The structure of demersal fish assemblages in a cold, highly stratified environment. – ICES Journal of Marine Science, 68: 1896–1908. Fish are a major component of marine ecosystems, with many species co-occuring in the same habitats. Potential interactions among species and with the environment can be studied through the identification of species assemblages. Data from bottom trawl surveys (2004–2008) conducted in the estuary and northern Gulf of St Lawrence were analysed using multivariate methods (cluster, multidimensional scaling, and detrended canonical correspondence analysis) to describe the structure and composition of demersal fish assemblages, including rare and smaller non-commercial species. The spatial variability in environmental conditions that characterizes the study area has a significant impact on the composition of fish assemblages in the region. In all, 35 taxa were classified as key, and 6 main fish assemblages were described, based on catch in numbers. These assemblages had a coherent spatial distribution in the study area, associated with either depth, salinity and temperature, or dissolved oxygen. The analyses showed overall strong correlations between species abundance and prevalent environmental conditions and explained 18.4% of the variance in species abundance data and 79.2% of the variance in the species–environment relationship.

Description: Wright, P. J., Millar, C. P., and Gibb, F. M. 2011. Intrastock differences in maturation schedules of Atlantic cod, Gadus morhua . – ICES Journal of Marine Science, 68: 1918–1927. Differences in maturation schedules from three subpopulations of North Sea cod ( Gadus morhua ) were examined using the demographic probabilistic maturation reaction norm (PMRN) approach. Declines in maturation probability with size and age were evident within the North Sea cod stock, but the magnitude of decline differed among subpopulations. The difference in the rate of decline led to significant spatial differences in recent times. Changes in maturation probability could not be explained by colonization from adjacent regions indicating a local response to conditions. The greatest decline in maturation probability followed the near collapse of regional spawning biomass during the 1980s and 1990s. A new methodology was developed to integrate the effects of temperature and competitive biomass into the estimation of the PMRN. Temperature had a positive effect on maturation probability, but could only partially explain the decreasing trend in PMRN midpoints. Consequently, regional selection for early maturing genotypes provides the most parsimonious explanation for the declines in maturation probability observed. The difference in maturation probability among North Sea cod subpopulations, and the additive contribution of temperature to the estimation of change, underscores the need to account for population structuring and to incorporate temperature as a covariate in future applications of the PMRN.

Description: Da Rocha, J-M., and Gutiérrez, M-J. 2011. Lessons from the long-term management plan for northern hake: could the economic assessment have accepted it? – ICES Journal of Marine Science, 68: 1937–1941. An economic working group was convened by the EU's Scientific, Technical and Economic Committee for Fisheries (STECF) in 2007 to evaluate the potential economic consequences of the long-term management plan for the northern hake ( Merluccius merluccius ) stock. An analysis of all the scenarios proposed by the biological assessment using the Economic Interpretation of ACFM Advice (EIAA) model showed that F at the status quo level was the best policy for both yield and profits, in terms of net present values. This result is counter-intuitive because it seems to suggest that effort costs do not influence economic indicators, whereas it is widely accepted that including costs negatively affects economic indicators. A dynamic age-structured model is applied to northern hake and shows that the optimal fishing mortality that maximizes the net present value of profits is 〈 F max . The reason why the EIAA analysis was biased towards scenarios with F 〉 F max is also shown.

Description: Shephard, S., Reid, D. G., and Greenstreet, S. P. R. 2011. Interpreting the large fish indicator for the Celtic Sea. – ICES Journal of Marine Science, 68: 1963–1972. The large fish indicator (LFI) was developed in the North Sea as a size-based indicator of fish community state. It is now established as OSPAR's fish community Ecological Quality Objective (EcoQO) metric and will be applied across all OSPAR regions. To produce a protocol for use when developing regional LFIs, the North Sea experience is interpreted using data from the Celtic Sea. Differences in fish community species composition and size distribution were reflected in a different species complex and large fish threshold (50 cm) for the Celtic Sea LFI. However, a lag of 12–14 years in the relationship between assemblage-averaged fishing mortality F com, y and the LFI suggested similar underlying ecological mechanisms to the North Sea. The indicator responded to changes in small fish biomass that follow fishing-induced changes in the level of predation by large demersal piscivores. The Celtic Sea LFI showed maximum observed values 〉0.40 before 1990, and 0.40 is here proposed as an EcoQO. Development of regional LFIs demands a flexible process rather than a strictly prescriptive protocol.

Description: Welcomme, R. L. 2011. An overview of global catch statistics for inland fish. – ICES Journal of Marine Science, 68: 1751–1756. The reported global inland fish catch passed 10 million tonnes in 2008, after almost linear growth from the early 1950s. The rise coincides with an increasing number of reports of falling catches resulting from environmental degradation. It is thought that catches from inland waters were underreported in the past because of constraints on collecting the relevant data. National approaches to data collection are not generally comparable and their accuracy not usually assessed. National data processing and reporting should be audited, and training undertaken to harmonize these activities. The apparently bigger catches probably result from better reporting of actual catches rather than any increase in the amount of fish landed. Current data are sufficient only for a general overview of global inland catches of fish, rather than for the detailed analysis needed for management, policy formulation, and the valuation of inland fisheries. There is a need for improved approaches to data collection and for historical catches to be corrected to account for changes in methodologies and reporting procedures.

Description: Lam, V. W. Y., Sumaila, U. R., Dyck, A., Pauly, D., and Watson, R. 2011. Construction and first applications of a global cost of fishing database. – ICES Journal of Marine Science, 68: 1996–2004. The development of a new global database of fishing cost is described, and an overview of fishing cost patterns at national, regional, and global scales is provided. This fishing cost database provides economic information required for assessing the economics of fisheries at various scales. It covers variable and fixed costs of maritime countries, representing ~98% of global landings in 2005. Linked to country and gear-type combinations, cost estimates can be mapped to a database of spatially allocated fisheries catches for future analysis in both spatial and temporal dimensions. The global average variable cost per tonne of catch in 2005 is estimated to range between US$639 and $1217, and the total cost per tonne from $763 to $1477, with mean values of $928 and $1120, respectively. The total global variable fishing cost is estimated to be in the range US$50–96 billion per year, with a mean of $73 billion per annum in 2005 dollar equivalents.

Description: Faunce, C. H. A 2011. comparison between industry and observer catch compositions within the Gulf of Alaska rockfish fishery. – ICES Journal of Marine Science, 68: 1769–1777. Stock assessment scientists and fishery managers operate under the necessary assumption that the identities of species in official catch reports are known without error. To test this assumption, the incidence, magnitude, and possible causes of species misidentification between industry and fishery-observer data sources were investigated for 29 rockfish landings made in Kodiak, AK. Rockfish species were misidentified in nearly all these landings, and the incidence of misidentification between data sources differed among species rather than the processing plant examined. Although observers failed to identify species recorded by processing plant staff as a result of small sampling fractions, the industry missed species that were identified by observers in more than half the offloads examined. The presence of management species complexes did not reduce the likelihood of erroneous quota debiting as a result of species misidentification. In one landing, the misidentification of the main rockfish species corresponded to the release of a weekly report on total allowable catch and resulted in a delayed fishery closure. Efforts to improve the accuracy of species identifications reported by industry in landing reports are warranted in Alaska, and methods to accomplish this through efficient deployment of observers are discussed.

Description: Aims A decrease in species diversity after fertilization is a common phenomenon in grasslands; however, the mechanism causing it remains highly controversial. The light competition hypothesis to explain loss of diversity has received much attention. The aim of the present paper was to test this hypothesis. Methods Fertilization was used to control above- and belowground resources simultaneously, while shade was used to control aboveground resource in an alpine meadow on the Tibetan Plateau. Univariate general linear models was used to estimate the effects of fertilization and shade on above- and belowground vegetation characteristics, including photosynthetically active radiation (PAR) in the understory, aboveground biomass, belowground biomass, R:S ratio, species richness and Simpson's diversity index. Important findings PAR was similar in the understory of shaded and fertilized plots, but only fertilization reduced species richness and diversity, suggesting that light competition alone could not explain diversity loss after fertilization. The root biomass and R:S ratio had a significant increase in shaded plots, but the richness and diversity did not change, suggesting that root competition alone also could not explain diversity loss after fertilization in this community. Our results illustrated that the root–shoot competition interactions, investigated from a functional groups perspective, should be the most reasonable explanation leading to the diversity loss due to fertilization.

Description: Aims Recent theories indicate that N is more in demand for plant growth than P; therefore, N concentration and N : C and N : P ratios are predicted to be positively correlated with relative growth rate (RGR) in plants under nutrient-enriched conditions. This prediction was tested in this study. Methods We examined the whole-plant concentrations of C, N and P and RGR, as well as the relationship between RGR and the concentrations and the ratios of N : C, P : C and N : P, for different harvest stages (the days after seed germination) of the seedlings of seven shrub species and four herbaceous species grown in N and P non-limiting conditions. The relationships among plant size, nutrient concentrations and ratios were subsequently determined. Important Findings RGR was positively correlated with N concentration and the ratios of N : P and N : C when the data were pooled for all species and for each shrub species, but not for individual herbaceous species. However, the relationship between RGR and P concentration and P : C was not significantly correlated for either shrubs or herbs. The variation of N among harvest stages and species was much greater than that of P, and the variation in N : P ratio was determined primarily by changes in N concentration. The shrub species differed from the herbaceous species in their N and P concentrations, nutrient ratios and in intraspecific relationships between RGR and nutrient ratios. These differences possibly reflect differences in the capacity for P storage and biomass allocation patterns. In general, our data support recent theoretical predictions regarding the relationship between RGR and C : N : P stoichiometry, but they also show that species with different life forms differ in the relationships among RGR and C : N : P stoichimetries.

Description: Aims Accurate forecast of ecosystem states is critical for improving natural resource management and climate change mitigation. Assimilating observed data into models is an effective way to reduce uncertainties in ecological forecasting. However, influences of measurement errors on parameter estimation and forecasted state changes have not been carefully examined. This study analyzed the parameter identifiability of a process-based ecosystem carbon cycle model, the sensitivity of parameter estimates and model forecasts to the magnitudes of measurement errors and the information contributions of the assimilated data to model forecasts with a data assimilation approach. Methods We applied a Markov Chain Monte Carlo method to assimilate eight biometric data sets into the Terrestrial ECOsystem model. The data were the observations of foliage biomass, wood biomass, fine root biomass, microbial biomass, litter fall, litter, soil carbon and soil respiration, collected at the Duke Forest free-air CO 2 enrichment facilities from 1996 to 2005. Three levels of measurement errors were assigned to these data sets by halving and doubling their original standard deviations. Important Findings Results showed that only less than half of the 30 parameters could be constrained, though the observations were extensive and the model was relatively simple. Higher measurement errors led to higher uncertainties in parameters estimates and forecasted carbon (C) pool sizes. The long-term predictions of the slow turnover pools were affected less by the measurement errors than those of fast turnover pools. Assimilated data contributed less information for the pools with long residence times in long-term forecasts. These results indicate the residence times of C pools played a key role in regulating propagation of errors from measurements to model forecasts in a data assimilation system. Improving the estimation of parameters of slow turnover C pools is the key to better forecast long-term ecosystem C dynamics.

Description: Aims Since 2000, the environmental flow controls project has been implemented in the lower Heihe River Basin, a typical arid inland river basin in northwest China, to restore the deteriorated ecological environment in this region. The aim of this study was to explore the impacts of groundwater fluctuations on vegetation dynamics. Our results can be used as a reference for water resources planning and management to maintain proper environmental flows in arid areas. Methods The location (by Global Positioning System) and depth of the monitoring wells, as well as groundwater table depth and salinity were measured in situ at each site from July to August 2009. Based on the measurements of the groundwater table depth and salinity following the implementation of environmental flow controls project (EFCP) in the lower Heihe River Basin, the groundwater fluctuations during the period from 2001 to 2009 were analyzed. Descriptive statistics and Pearson's correlation were used to analyze the relationship between vegetation changes and groundwater table fluctuations. Additionally, the spatial distributions of the groundwater table depth and salinity were interpolated using the simple kriging method. Trend analysis was applied to the time series of integrated Moderate Resolution Imaging Spectroradiometer normalized difference vegetation index data to identify interannual vegetation dynamics. The relationship between vegetation status and groundwater environment was investigated at different spatial scales by analyzing and comparing the time series and trends. Important Findings (i) The groundwater table and salinity increased significantly in most of the study area with spatial heterogeneity. On average, the groundwater table rose ~0.5 and 1.5 m in the upper and lower Ejina Basin, respectively, and the groundwater salinity increased across the study area by 0–4%. (ii) A notable correlation between the vegetation status and the groundwater table was revealed when the groundwater table depth fluctuated between 1.8 and 3.5 m, whereas the vegetation did not show an obvious response to groundwater table changes when the groundwater table depth was more than 5–6 m. (iii) Vegetation restoration mainly occurred in riparian areas within 500–1 000 m of from natural rivers, where the groundwater table depth varied from 2 to 4 m, and salinity was 〈5%, whereas vegetation degradation appeared at some locations where groundwater environment had deteriorated.

Description: Aims Beech ( Fagus sylvatica L.) is an important species in natural and managed forests in Europe. This drought-sensitive species dominates even-aged stands as well more natural stands composed of a mixture of tree species, age and size classes. This study evaluates the extent that heterogeneity in spacing and tree diameter affect the seasonal availability and use of water. Methods Two stands were evaluated: (i) a heterogeneous forest remnant (NAT) with trees up to ~300 years old, a mean top height of 28.4 m and a total of 733 stems ha –1 with stem diameters averaging 18 cm and (ii) an even-aged 80-year old stand (MAN), with a height of 25 m, and a total of 283 stems ha –1 with diameters averaging 38 cm. Stem sap flow, J s (g m –2 s –1 ), was continuously measured in 12 (MAN) and 13 (NAT) trees using 20-mm long heat dissipation sensors. Individual tree measures of sap flow were correlated using non-linear statistical methods with air vapour pressure deficit ( D , hPa) and global radiation ( R g , J m –2 day –1 ), along with constraints imposed by reductions in soil water content (SWC). SWC was measured as volumetric % using time domain reflectometry. Important Findings The daily integrated J s ( J s-sum ) for trees growing in the evenly spaced MAN stand and trees in canopy and closed forest positions in NAT stand decreased as the availability of soil moisture was reduced. In the heterogeneous NAT stand, SWC in a recently formed canopy gap remained high throughout the vegetation period. Based on regression models, the predicted relative decrease in J s-sum for dry relative to moist soil water conditions in the closed forest (at mean daily D = 10 hPa) was 7–11% for trees near the gap and 39–42% for trees in the closed forest. In MAN, the reduction in J s -sum was 29% in dry relative to moist conditions. J s -sum in the outer 20 mm of the xylem in NAT was lower than that in MAN and the rate of decline in J s with xylem depth was less in NAT than in MAN. In MAN, J s -sum in deep and outer xylem was negatively affected at low soil moisture availability; in NAT, this was the case for only the outer xylem indicating that deep roots could be important in supplying water at times of low soil moisture in the upper soil.

Description: Ensis macha has a wide distribution along the Pacific and Atlantic southern coasts of South America. The pattern of morphological shell variation of this razor clam was analysed in 12 populations sampled along its whole Atlantic distribution, covering a latitudinal range of 3,700 km. The southernmost extant population of E. macha was recorded in the Beagle Channel. Variation in shell outline was assessed using elliptic Fourier analysis of adult individuals followed by different multivariate analyses. Significant shell-shape variation was found along the latitudinal range. Elliptical Fourier analysis revealed that trends in shell slenderness and curvature were associated mainly with salinity and water depth of the localities. Each locality presented a distinct shell shape, different from all other localities. Nevertheless, the populations could be grouped into four large assemblages between which a latitudinal gradient of shell shape was observed. Phenotypic divergence in shell shape is suggestive of population differentiation, but assessing the underlying processes is not straightforward because of the complex interaction between genetic and environmental factors. The possible evolutionary processes that mediate the effects of environmental variables and geographical distances on the shell-shape variation are discussed.

Description: Seasonal variations in oestradiol-17β and testosterone levels of the razor clam Sinonovacula constricta from the Yellow River delta in China were investigated in relation to the reproductive cycle from April 2007 to March 2008. Histological analysis indicated that gametogenesis began in June–July when water temperature was 22.0–27.0°C and ended during September–October when food was abundant. Oestradiol-17β and testosterone concentrations were determined by enzyme-linked immunosorbent assay in the gonad of S. constricta . Oestradiol-17β concentration in the female gonads was higher than that in the male gonads, while testosterone concentration in the male gonads was higher than that in the female gonads during sexual maturation. A positive correlation between oestradiol-17β and mean oocyte diameter was observed during the study period ( r = 0.664, P 〈 0.05), indicating that oestradiol-17β may play an important role in regulating vitellogenesis. Oestradiol-17β and testosterone increased during sexual maturation in females and males, respectively, and then decreased markedly after spawning. These findings indicated that the fluctuations in the levels of both steroids were closely related to the reproductive cycle, thus oestradiol-17β and testosterone could have a role as endogenous modulators in sex determination, development and maturation of S. constricta .

Description: Quaternary climatic fluctuations had major impacts on species’ distributions over the last 2.5 Myr. Expansions and contractions of the polar ice caps throughout glacial cycles strongly affected terrestrial fauna and flora whereas eustatic sea level variations had major consequences on rocky-shore communities. The effect of these glacial episodes on marine organisms inhabiting oceanic islands is still poorly understood. We analysed the genetic structure of the marine mussel Brachidontes puniceus from the Cape Verde Islands using mitochondrial sequence data. The apparent absence of physical oceanographic barriers or ecological filters in the geographical range of B. puniceus is reflected in the lack of genetic structure found among populations from the entire archipelago. Larval dispersal in B. puniceus likely played a critical role in the demographic connectivity of populations across the Cape Verde archipelago. Results from demographic analysis were consistent with a population expansion promoted by an increase in the habitat available for larval settlement resulting from a low sea-level stand during the last glacial maximum.

Description: To analyze the potential trophic interactions among tuna larvae and other fish species, we studied the larval fish assemblages inhabiting the surface mixed layer around the Balearic Islands using data from two surveys carried out in summer 2006 and 2008. Despite the high diversity, Thunnus alalunga , Auxis rochei , Cyclothone pygmaea and Ceratoscopelus maderensis clearly dominated the catch in both years. The spatial distribution of several larval fish assemblages, in which tuna larvae were among the dominant species, was related to the presence of fronts and mixed Atlantic waters (AW). Different developmental stages of tuna were found in similar hydrographical scenarios. Smaller tuna larvae and plausible piscivorous tuna were found in the areas with mixed AW. Later in the season, potential piscivorous tuna were found together with small larvae from other non-tuna species that had been spawned later and transported by the fresh AW flow to offshore stations. That the different life stages of tuna co-occur with mesopelagic species in the mixed layer reveals the interesting possibility of ecological interactions between the different larvae.

Description: The feeding ecology of larvae of the lightfish Maurolicus parvipinnis (Pisces: Sternoptychidae, 2.8–13.4 mm) in fjords and channels of southern Chile (41°–53°S), was analysed during austral spring 2005, 2008 and 2009. Larvae of M. parvipinnis begin external feeding at ~3-mm body length (BL). They are carnivorous predators with similar feeding incidence during day and nighttime, but with higher prey numbers in their guts during day than night. Feeding incidence increased after 8-mm BL, coinciding with an increase in the growth rate of the upper jaw length. The diet of M. parvipinnis larvae was composed of 22 different prey items, mainly invertebrate eggs, nauplii, calanoid, cyclopoid and poecilostomatoid copepodites, ostracods, cladocerans and amphipods. According to the relative importance index [%index of relative importance (IRI)], the most important prey items were Paracalanus parvus copepodites (%IRI = 55.6%), Oithona spp. copepodites (%IRI = 16.3%) and copepod eggs (%IRI = 9.2%), indicating that most of the feeding is on copepod early life stages. Trophic niche breadth was ~0.17 and it did not increase with larval length, suggesting that larval M. parvipinnis have a high degree of selective foraging. Also, we detected a significant relation between feeding success and vertical stratification of the water column, with higher prey volume per gut found in larvae collected in areas with a Brunt-Väissälä frequency of 0.07–0.2 cycles s –1 . We discuss potential effects of the fjord environment on the feeding behavior of this important species along Chilean Patagonia.

Description: The Continuous Plankton Recorder has been deployed in the NE Pacific on two intersecting transects since 2000. Many deployments included a temperature sensor providing in situ temperature data to supplement the species abundance data for ~1300 samples. Twenty-nine copepod taxa were sufficiently abundant to examine their temperature-related distributions. Groups of warm- and cold-water species were identified, with overlapping distributions between 48 and 58°N. Recent fluctuations in ocean climate, from the warmest year on record in 2005 to one of the coldest in decades in 2008, provided ideal conditions to observe temperature-related interannual variability. The abundance and northwards extension of warm water species were significantly positively correlated with mean annual temperature and the Pacific Decadal Oscillation. The cold water species showed no correlations with temperature/Pacific Decadal Oscillation (PDO) within the study region; however, if the 4 years of sampling that extended south to 39°N were examined separately, there was a strong relationship between temperature/PDO and the southern extent of subarctic copepods. Under warm ocean conditions, the range overlap of the two groups will increase as warm water species extend northwards, causing an increase in copepod diversity. Since warm water species are generally smaller and nutritionally poorer, this has implications for higher trophic levels.

Description: The frequent upwelling events characteristic of Oregon's summer may make nearshore retention challenging for early, non-migrating euphausiid life stages inhabiting the surface layer. In contrast, later, vertically migrating life stages spend more time below the strongest offshore flow and are moved offshore less rapidly. We hypothesize that population stage structure will vary in predictable ways as a result of differential transport, a function of occupied depth (and therefore life stage). MOCNESS (Multiple Opening/Closing Net and Environmental Sampling System) samples have indicated that early Euphausia pacifica calyptopes (stages 1 and 2) are non-migrators, whereas late furcilia (stages 4–7) are migrators. We develop a metric (migrator fraction, F M ) of relative densities of these larval stages within a sample to examine potential differential transport with alongshore winds on short timescales (0.5–7 days), for data collected during upwelling seasons from 2000 to 2002 at two stations off Oregon. F M and northward winds had a significant negative relationship in 2002 at the inshore station, indicating differential transport. Upwelling condition-classified sampled densities at nearshore and offshore stations also suggested differential cross-shelf transport, but trends were not always consistent with the hypothesis, suggesting the cross-shelf distribution of non-migrators was not consistent throughout the study period. Several other factors, such as spawning, might also contribute to significant trends observed in F M . The results of this analysis suggest that relationships exist between E. pacifica larval distributions and wind events in the Oregon upwelling region, but that the distributions may be too complex to predict at the event scale without more sophisticated tools, such as biological-physical coupled models.

Description: In experiments designed primarily to investigate viral lysis, we found that the presence of viruses had a positive effect on the growth of Synechococcus . A Landry-Hassett-type stepwise dilution experiment conducted during a Synechococcus bloom in the Gulf of Mexico used both (i) 0.2-µm filtered seawater in which the abundance of bacteria and grazers were reduced but the majority of viruses were retained, and (ii) ultrafiltered (30 000 MW cutoff) virus-free seawater in which the abundance of viruses, bacteria and grazers were reduced. High growth rates and frequency of dividing cells (FDCs) were recorded in 0.2-µm filtered treatments while growth was inhibited in incubations with a high proportion of virus-free ultrafiltered water. In two subsequent experiments using Mediterranean Sea populations, a two-point dilution approach in which viral abundance was reduced by 80–90% yielded similar results, and showed that Synechococcus only grew well in the presence of viruses, bacteria and grazers. In four further Mediterranean experiments viruses removed via ultrafiltration were added back, either untreated, or inactivated by a heat treatment. Growth rates and FDCs were higher in the presence of untreated viruses than with viruses inactivated by heat, suggesting that it was not organic matter in the virus-size fraction but rather the presence of infectious viruses which sustained growth. While Synechococcus was also infected by viruses during these experiments, our data imply that growth of Synechococcus may depend upon viral lysis of heterotrophic bacteria. This finding is consistent with the view that nutrient cycling by viral lysis of heterotrophic bacteria may control phytoplankton growth and ecosystem scale carbon production.

Description: Linkage between cold hardiness and desiccation tolerance was examined in an invasive freshwater apple snail, Pomacea canaliculata , collected from locations in three different climatic zones. Snails collected from temperate Kyushu, Japan, showed enhanced cold hardiness after cold acclimation, and cold-tolerant snails survived longer after exposure to desiccation than cold-intolerant snails without cold acclimation. Progenies of tropical snails collected from Luzon and Mindanao, the Philippines, which had never experienced cold weather revealed the same response as Japanese snails to cold stress: enhancement of cold hardiness after cold acclimation. Cold-tolerant snails from tropical populations also attained better survivorship under desiccation conditions. Thus, linkage of tolerance between cold weather and desiccation appears to be a general feature of P. canaliculata . Cold hardiness of snails before and after cold acclimation, respectively, did not differ among the three populations from temperate and tropical regions. A trend was found for snails from Mindanao, in the tropical rainforest climatic zone (having a milder dry season), to be less desiccation-tolerant than snails from Kyushu and Luzon, having a colder or more severe dry season.

Description: This study investigated the growth rate of Limnoperna fortunei postlarvae on experimental frames over the course of a year, to evaluate the effects of physicochemical environmental factors on their growth in a reservoir, Lake Ohshio, Gunma, Japan. The median shell size of L. fortunei slightly increased in the autumn after recruitment, exhibited little growth in winter and then greatly increased in summer. Water temperature was positively correlated with growth rate of L. fortunei . However, we found no correlation between the growth rate and dissolved oxygen, chlorophyll a or turbidity. The settlement pattern of L. fortunei was also investigated during the course of a year. Second-year recruit density was much higher than for first-year recruits.

Description: The goal of this study was to determine the morphology and ultrastructure of doliolid pellets using light, epifluorescence and transmission electron microscopy and compare the results to observations of calanoid copepod pellets. For (ultra)structural analyses, pellets of gonozooids of Dolioletta gegenbauri and females of the copepod Eucalanus pileatus were produced in feeding experiments at close to environmental food concentrations. Thin sections of a representative doliolid pellet revealed that these pellets were mainly composed of intact diatom valves, a few fragmented valves and intact flagellates. While the larger diatoms, Rhizosolenia alata , were completely digested (empty valves), the smaller diatoms, Thalassiosira weissflogii , were partly, or not digested at all. The phytoflagellate, Isochrysis galbana , appeared to be hardly digested. Aggregations of bacteria occurred mostly inside pellets associated closely with intact I. galbana flagellates and partly digested T. weissflogii cells; some scattered bacteria were found among fragmented valves. No, or little, bacterial colonization was associated with empty R. alata valves, and hardly digested T. weissflogii cells. Whereas doliolid fecal pellets were loosely packed and composed of fully, incompletely and/or hardly digested food particles, pellets of the copepod E. pileatus were densely packed and consisted mainly of fragmented diatom valves. Pellets of doliolids and calanoid copepods can represent a high percentage of the particulate organic carbon in the water-column on subtropical continental shelves.

Description: Changes in lake thermal structure, which are predicted with future climate warming, may alter predator–prey interactions if foraging rates or the spatial overlap of predators and prey depend on thermal conditions. Small Boreal Shield lakes are particularly responsive to weather-induced changes in thermal structure. They are often fishless, with macroinvertebrate predators regulating crustacean zooplankton communities. We performed a mesocosm experiment to examine how thermal structure (stratified and isothermal) influences the predation impact of surface-orienting Buenoa macrotibialis and vertically migrating Chaoborus punctipennis on crustacean zooplankton. We expected predation from surface-orienting predators to be greatest in stratified conditions when food resources are concentrated near the surface in proximity with predators. Surprisingly, surface predators had no effect on zooplankton abundance, and zooplankton avoided surface predators regardless of thermal habitat structure. In contrast, Chaoborus had a strong predation impact and reduced total zooplankton abundance, but only in isothermal conditions. We hypothesize that this predation effect was due to increased predator metabolism, foraging and ingestion rates when migrating through a thermally homogenous warm water column without access to cool bottom waters. These results demonstrate that changes in lake thermal structure may result in strong, unexpected consequences for predator–prey dynamics.

Description: The majority of studies of mechanisms regulating bacterioplankton processes have focused on assessing the isolated effects of nutrients and predation. However, in natural ecosystems, microorganisms may interact strongly with larger organisms in an array of complex, direct and indirect interdependencies. In this work, we report the results of a field mesocosm experiment in which, over 7 weeks, we evaluated the individual and interactive effects of resource availability (N and P addition) and indirect effects originating from the presence of an omnivorous fish species ( Hyphessobrycon bifasciatus ) on bacterioplankton production (BP). Nutrient addition and fish presence both had individual positive effects on BP, but bottom-up control effects were stronger than indirect top-down control effects. The positive effect of nutrients on BP was mainly direct, through increasing the availability of inorganic N and P. There was no significant interaction between fish and nutrients. The positive indirect top-down effects of omnivorous fish on BP were probably related to both fish-mediated changes in the zooplankton community structure and fish-mediated cross-habitat nutrient regeneration. Our results show that changes in food web structure, due to the presence or absence of vertebrate macroconsumers, can also affect heterotrophic microbial processes.

Description: Food limitation is one of the most important extrinsic factors influencing population dynamics in aquatic ecosystems, but the spatial patterns of resource limitation and their influence on zooplankton species have not been investigated. We tested the hypothesis that the occurrence and intensity of food limitation may vary both spatially and temporally, and that the irregular population dynamics of the rotifers Brachionus group plicatilis and Hexarthra jenkinae in a saline, warm-monomictic, oligotrophic lake (Alchichica, Central Mexico) can be attributed to resource limitation. We estimated plankton abundance and composition and performed 19 laboratory experiments to assess the intensity of food limitation ( r ) at three selected depths in the water column. Most of the phytoplankton biomass consisted of algae inedible to rotifers, and good-quality food (phytoplankton ≤20 µm + small heterotrophic flagellates) was frequently below the threshold food concentration for Brachionus species. The vertical distribution and abundance of rotifers were correlated with the availability of food resources. Food limitation was observed during mixing and late stratification; however, the intensity of limitation was rather similar throughout the water column owing to the overall scarcity of resources in the lake. Hexarthra seldom appeared. We conclude that the irregular pattern of rotifer abundance we observed is a consequence of the interplay between the harsh conditions of scarce food availability, resulting in intense resource competition and opportunities for rapid exploitation of opportunities when food outbursts occur.

Description: Cyanobacterial blooms of Aphanizomenon spp. occur worldwide, with deleterious effects on aquatic communities. The present work aimed to investigate the effects of different levels of phosphorus and nitrogen on the growth of Aphanizomenon bloom-forming strains, belonging to the species A. issatschenkoi , A. aphanizomenoides and A. gracile . Algal inhibition tests were also performed to assess the potential allelopathic effects of the strains' filtrates on the growth of four green algae ( Pseudokirchneriella subcapitata , Chlorella vulgaris , Pandorina morum and Coelastrum astroideum ). Phosphorus had a significant effect on the growth of all the strains tested; orthophosphate concentrations ≤0.3 mg PO 4 3– L –1 led to a decrease of more than 50% in the cyanobacterial growth of most strains. The growth of A. gracile strains was unaffected by variation in nitrate levels, but strains of A. issatschenkoi (UADFA1) and A. aphanizomenoides (UADFA6, UADFA7 and UADFA13) were moderately to extremely sensitive to nitrate depletion in the medium. These results strengthen the idea that intra-specific variation may play an important role in bloom dynamics; however, culture conditions and mutations may explain the morphological and physiological changes observed. Allelopathic assays revealed significant inhibition of microalgal growth by filtrates of strains from the three species, but also indicated intra-specific differences in allelopathic activity.

Description: Aims Evapotranspiration (ET) is a key component of water balance and is closely linked to ecosystem productivity. In arid regions, large proportion of precipitation (PPT) is returned to the atmosphere through ET, with only a small amount available to plants. Our objective was to examine the variability in ET–soil water relationship based on a set of ecosystems that are representative for semi-arid Inner Mongolia and its main land use practices. Methods This study used Eddy covariance (EC) data of water vapor (i.e. ET, mm), PPT (mm), soil volumetric water content (VWC, %), root biomass density and soil properties from three paired sites in semi-arid Inner Mongolia: cropland (Cropland-D) versus undisturbed grassland (Steppe-D), grazed grassland (Grazed Steppe-X) versus fenced grassland (Fenced Steppe-X) and poplar plantation (Poplar-K) versus undisturbed shrubland (Shrubland-K). The paired sites experienced similar climate conditions and were equipped with the same monitoring systems. Important Findings The ET/PPT ratio was significantly lower at Cropland-D and Grazed Steppe-X in comparison to the undisturbed grasslands, Steppe-D and Fenced Steppe-X. These differences are in part explained by the lower VWC in the upper soil layers associated with compaction of surface soil in heavily grazed and fallow fields. In contrast, the ET/PPT ratio was much higher at the poplar plantation compared to the undisturbed shrubland because poplar roots tap groundwater. The VWC of different soil layers responded differently to rainfall events across the six study sites. Except for Poplar-K, ET was significantly constrained by VWC at the other five sites, although the correlation coefficients varied among soil layers. The relative contribution of soil water to ET correlated with the density of root biomass in the soil ( R 2 = 0.67, P 〈 0.01). The soil water storage in the upper 50 cm of soil contributed 59, 43, 64 and 23% of total water loss as ET at Steppe-D, Cropland-D, Shrubland-K and Poplar-K, respectively. Our across-site analysis indicates that the site level of soil water for ET differs between land use and land cover type due to altered root distribution and/or soil physical properties. As a result, we recommend that ecosystem models designed to predict the response of a wide variety of vegetation to climatic variation in arid regions include more detail in defining soil layers and interactions between evaporation, infiltration and root distribution patterns.

Description: Aims The field of ecohydrology is providing new theoretical frameworks and methodological approaches for understanding the complex interactions and feedbacks between vegetation and hydrologic flows at multiple scales. Here we review some of the major scientific and technological advances in ecohydrology as related to understanding the mechanisms by which plant–water relations influence water fluxes at ecosystem, watershed and landscape scales. Important Findings We identify several cross-cutting themes related to the role of plant–water relations in the ecohydrological literature, including the contrasting dynamics of water-limited and water-abundant ecosystems, transferring information about water fluxes across scales, understanding spatiotemporal heterogeneity and complexity, ecohydrological triggers associated with threshold behavior and shifts between alternative stable states and the need for long-term data sets at multiple scales. We then show how these themes are embedded within three key research areas where improved understanding of the linkages between plant–water relations and the hydrologic cycle have led to important advances in the field of ecohydrology: upscaling water fluxes from the leaf to the watershed and landscape, effects of plant–soil interactions on soil moisture dynamics and controls exerted by plant water use patterns and mechanisms on streamflow regime. In particular, we highlight several pressing environmental challenges facing society today where ecohydrology can contribute to the scientific knowledge for developing sound management and policy solutions. We conclude by identifying key challenges and opportunities for advancing contributions of plant–water relations research to ecohydrology in the future.

Description: Aims In recent years, there has been an increased interest in examining changes in forest systems in response to drought, flooding, hurricanes and climate change. In the southern United States, forested wetlands are of special interest because of the extent of these forests. Coastal plain forested wetlands are among the most vulnerable to these climatic impacts. One of the problems in developing management practices for these coastal areas is the difficulty in adequately describing productivity relations and predicting how the structure and function of these communities might be affected by natural or anthropogenic disturbances. Community response to environmental change often occurs over a period of years, and the majority of reported studies are for 1–3 years in duration. This study documents long-term changes (10 years) in structure, composition and growth along a catena of high water table forested sites of an ancient beach ridge landscape in coastal South Carolina. Methods Aboveground net primary production (ANPP) of trees was monitored from 2000 to 2009 on three sites within a longleaf pine-swamp blackgum forest system on the southern end of the Waccamaw Neck area of Georgetown County, SC. Permanent study plots (20 x 25 m) were established across a moisture gradient (Dry, Intermediate, and Wet). Water levels were continuously monitored, litterfall was measured monthly and growth of trees ≥10 cm diameter at breast height was monitored on an annual basis. Annual litterfall and tree production values were summed to provide estimates of ANPP. Important Findings The study site was under severe drought conditions July 2001 through late summer 2002 and again in 2007. Diameter growth was affected in all three sites, but with different patterns. It seems that diameter growth in the Wet site was more sensitive to drought conditions in 2001–02 and 2007 than either Dry or Intermediate sites. While droughts did not seem to have a significant impact on litterfall in the Wet site, litterfall in the Intermediate site was more sensitive to the drought than either Dry or Wet sites. ANPP was significantly lower in both Intermediate and Wet sites in 2001 at ≤602 g/m 2 . Highest ANPP (〉1 000 g/m 2 ) occurred in the Intermediate and Wet sites in 2003 following a return to more normal water levels at the end of the drought. Maximum tree production occurred on the Wet site in 2003 (657 g/m 2 ), which exceeded total ANPP of any site in 2001. In the Dry site, ANPP remained relatively consistent throughout the study when compared to Wet and Intermediate sites. While litterfall estimates are well defined with 3–5 years of data, data collection is continuing to assess impact of drought on stem growth across the gradient, which is still not clear with 10 years of data.

Description: Aims To explore whether the trade-off between seed and vegetative reproductive modes is flexible in environments with different amounts of available resources to maintain optimal behaviors. Methods A transition matrix model was established to determine the optimal trade-off between seed and vegetative reproduction in resources–variable habitats. Important Findings The model predicts that plants allocate more resources to seed reproduction when available resources are scarce. With increasing resources, more vegetative propagules are produced. However, if resources keep increasing to a harmful level, plants would switch to seeds again.

Description: Aims Leymus chinensis is an original dominant plant in the Songnen grassland, and it has great value for restoration of severely degraded land. However, seeds are dormant, and low germination percentage is a problem for restoring L.chinensis grassland. The mechanism of seed dormancy is not been well understood. The primary aims of the present study were to investigate the dormancy mechanism of L.chinensis seeds (caryopses) with reference to the role of embryo-covering layers, endogenous hormones and temperature. Methods Changes in concentration of the endogenous hormones GA 3 , indoleacetic acid (IAA), zeatin riboside (ZR) and abscisic acid (ABA) in L.chinensis seeds from anthesis to maturity were measured by the enzyme-linked immunosorbent assay method. Germination at different stages of maturity were tested at 16/28°C, 5/28°C and 5/35°C for intact seeds with glumes (control), intact seeds with glumes removed (naked-whole seeds) and intact seeds with glumes and one-half of the endosperm removed (naked-half seeds). Important Findings Of the four endogenous hormones monitored, only the concentration of ZR differed significantly between the beginning and the end of seed development (increased); the GA 3 /ABA ratio also did not differ. Rank of germination percentage of control at the three temperature regimens was 5/28°C 〉 16/28°C 〉 5/35°C. Germination percentage of the naked-half seeds reached 100% under the three temperature regimens. We concluded that dormancy of L.chinensis seeds is not mainly controlled by endogenous hormones. Germination temperature, mechanical resistance of glumes and inhibition of endosperm are the main factors controlling dormancy and germination of L.chinensis seeds.

Description: Understanding factors that determine the fitness of invasive species may help us predict their spread and impact. Previous studies of the survival, growth and reproduction of Pomacea canaliculata , a freshwater apple snail native to South America now widely spread in Asia, North America and Hawaii, have emphasized the use of fresh leaves as food. We compared the consumption and growth of P. canaliculata reared on fresh and decaying leaves of three species of macrophytes with contrasting content of phenolics (general plant defence chemicals) and nutrients. We conducted 1-day consumption assays using adult snails and a 1-month survival and growth experiment using snails of various sizes. Our results showed that the consumption, survival and growth of P. canaliculata were determined by plant nutrients and phenolics, rather than plant freshness. For Murdannia nudiflora , a species with low phenolic content, fresh leaves with high nitrogen content were more palatable and valuable for growth than decaying leaves with low nitrogen content. Survival was high and not different between the fresh and decaying leaf treatments. For Myriophyllum aquaticum , decaying leaves with moderate nitrogen and low phenolic contents were more palatable and valuable for snail survival and growth than fresh leaves with high nitrogen and high phenolic contents. For Polygonum barbatum , a species with low nitrogen and medium phenolic contents, both fresh and decaying leaves were unpalatable, resulted in low snail survivorship, and did not support snail growth. The results thus indicate that P. canaliculata can utilize both fresh and decaying leaves of adequate levels of nutrients and low levels of phenolics. This dietary flexibility may have contributed to its successful colonization of many types of freshwater wetlands in regions where high-quality fresh leaves are not available throughout the year.

Description: The rhythmic migration pattern of the dinoflagellate Ceratium furca is a result of ecological adaptation to avoid high irradiance. The high proportions of dividing cells at deeper depths are likely to be an ecological response to maintain their population away from the turbulence in the near-surface layer.

Description: The MERIS (MEdium Resolution Imaging Spectrometer) maximum chlorophyll index was applied to Lake of the Woods, an inland water body under significant water quality pressure from recurring cyanobacteria blooms, in order to address the commonly raised concern that blooms on the lake have increased recently. Recent trends in bloom characteristics (intensity, timing and aerial extent) were analysed in relation to local climate variables, offering important new insights into the mechanisms driving algal bloom occurrences on the lake.

Description: To examine the relationship between carbon and nitrogen stable isotope (SI) ratios ( 13 C and 15 N) of zooplankton, we analyzed samples collected bimonthly from March to October 2009, from the euphotic layers of the Oyashio current along the A-line in the western North Pacific. Isotopic ratios of higher trophic levels such as predatory zooplankton and/or long-lived zooplankton varied little with season, while those of short-lived zooplankton were variable on the 15 N– 13 C map. We also analyzed preserved samples taken from the warm-core ring 86-B derived from the Kuroshio extension region. Although the zooplankton groups in the two regions exhibited different values in 15 N, the 15 N versus 13 C slopes for each ecosystem do not show significant differences. Statistical analysis conducted together with previously published data from the Antarctic Ocean and the Gulf of Alaska suggested a similar 15 N versus 13 C slope throughout the four regions. We attributed this common slope to physiological aspects of feeding processes (e.g. the kinetic isotope effects inherent in the processes of amino acid synthesis). The common pattern for all four oceanic regions suggests that SIs may be used to elucidate general patterns in ecosystems and biogeochemical cycles.

Description: In the North Atlantic, Calanus finmarchicus , C. glacialis and C. hyperboreus are identified based on subtle morphological traits, which is fastidious, or based on their allegedly non-overlapping prosome length ranges. We reappraised the prosome length-based diagnosis for the copepodite stage V stage by coupling prosome length and molecular identifications (mtDNA, 16S gene) for 1159 individuals collected over 2 years from 15 stations off the Canadian coast from the Arctic to the Atlantic. We observed spatial but no intra-annual variation in species' average prosome length. At sympatric coastal sites, prosome length overlap was frequent between C. finmarchicus and C. glacialis and restricted to the Estuary/Gulf of St. Lawrence between C. glacialis and C. hyperboreus . We used discriminant analyses to redefine prosome length criteria to minimize errors in species identification. Species abundances were corrected and this affected mostly C. glacialis . In the St. Lawrence Estuary and on the Labrador shelf, abundance of C. glacialis was underestimated by 19 and 35%, respectively, with important interannual variations since 2000. This increase in abundance could enhance estimation of the role of C. glacialis in the food web and potentially alter our view of the long-term changes along the eastern Canadian coast.

Description: Zooplankton in the ocean respond to visual and hydro-mechanical cues such as small-scale shear in turbulent flow. In addition, they form strong aggregations where currents intersect sloping bottoms. Strong and predictable tidal currents over a sill in Knight Inlet, Canada, make it an ideal location to investigate biological behaviour in turbulent cross-isobath flow. We examine acoustic data (38, 120 and 200 kHz) collected there during the daylight hours, when the dominant zooplankters, Euphausia pacifica have descended into low light levels at ~90 m. As expected, these data reveal strong aggregations at the sill. However, they occur consistently 10–20 m below the preferred light depth of the animals. We have constructed a simple model of the flow to investigate this phenomenon. Tracks of individual animals are traced in the flow and a variety of zooplankton behaviours tested. Our results indicate that the euphausiids must actively swim downward when they encounter the bottom boundary layer (bbl) to reproduce the observed downward shift in aggregation patterns. We suggest that this behaviour is cued by the small-scale shear in the bbl. Furthermore, this behaviour is likely to enhance aggregations found in strong flows at sills and on continental shelves.

Description: This study focused on how phosphorus and carbon control pelagic bacteria in lakes over a gradient of dissolved organic carbon (DOC from 6.7 to 29.5 mg C L –1 ) and phosphorus (P-tot from 5 to 19 µg L –1 ). Five oligotrophic lakes in southern Sweden were sampled in late autumn. Phosphate-P and glucose-C alone or in combination (0.01 and 0.3 mg L –1 , respectively) was added to 1.0 µm filtered lake water and incubated in darkness at 20°C. Additions of glucose (C) and phosphorus (P) alone did not lead to changes in the rates of bacterial metabolic processes, whereas bacterial respiration and bacterial production responded positively to C + P enrichment for most of the lakes sampled. Bacterial growth efficiency showed a wide range (2.5–28.7%) and low mean value (12%). These variations were not correlated with the DOC concentration. Our results show that heterotrophic bacterial carbon mineralization in this kind of system during autumn is conditioned by the combined availability of labile carbon and phosphorus, with the assimilated carbon mainly transformed to inorganic carbon in respiration, contributing to CO 2 supersaturation in these systems.

Description: We exposed the small-bodied cladoceran Moina micrura either to fish (vertebrate) or to Chaoborus (invertebrate) kairomones for three consecutive generations. We hypothesized that reactions to Chaoborus should be stronger than reactions to fish kairomones. Significant effects of predators and number of generations exposed to a predator were observed in size at primipara, clutch sizes and neonate body lengths. However, stronger responses were detected in females exposed to fish. For intrinsically small-bodied species such as Moina , resource allocation shifts favoring somatic growth might not be effective against invertebrate predators. Thus, our study highlights the relevance of evolutionary and developmental constraints imposed by a small body size that prevents the formation of certain types of defences.

Description: The genus Pseudocalanus (Copepoda, Calanoida) consists of seven species, all of which are known to co-occur with two or more sibling species in some areas of their geographic ranges. Despite the ecological importance of this abundant genus, there is no available method that can reliably and accurately identify Pseudocalanus species without knowledge of origin. We present evidence of several observations of Pseudocalanus moultoni [ Frost (1989) Can. J. Zool., 67, 525–551] in fjords of Svalbard and northern Norway; this species has previously been known to occur only on the east and west coasts of North America. Patterns of DNA sequence variation of the mitochondrial cytochrome oxidase subunit I (COI) gene allow us to confidently identify the species, discriminate it from co-occurring sibling species and infer relationships among the newly discovered and previously sampled P. moultoni populations. Our observations suggest that NE Atlantic populations of P. moultoni are self-sustaining and we discuss potential source populations and pathways of transport. In light of recent reports of climate-driven shifts in distributional ranges of marine zooplankton, accurate species identification is essential for monitoring and understanding marine ecosystems.

Description: Aims Oxygation refers to irrigation of crops with aerated water, through air injection using the venturi principle or the supply of hydrogen peroxide in the root zone, both using subsurface drip irrigation (SDI) system. Oxygation improves water use efficiency (WUE), producing more yield and, and therefore, optimizes the use of drip and SDI. But the efficiency of oxygation is quite possibly dependent on a number of factors. The primary objective of this study was, therefore, to quantify the effects of oxygation, emitter depths and soil type on crop root zone oxygen content, soil respiration, plant physiological response, biomass yield, quality and WUE of three crop species. Methods This study investigated the potential of oxygation to enhance soil respiration, plant growth, yield and water use efficiencies (WUE) of cotton and wheat in experiments in enclosed heavy-duty concrete troughs (tubs) and pineapple and cotton in field experiments. Experimental treatments in tubs for wheat included comparisons between two soil types (vertisol and ferrosol) and superimposed were two oxygation methods (Mazzei air injector and Seair Diffusion System) compared to a control, and for cotton, emitters at two depths using Mazzei air injectors were compared to a control. The field experiments compared Mazzei air injectors and a control for cotton in Emerald and pineapple in Yeppoon, both in central Queensland, Australia. Important findings In all experiments, soil oxygen content and soil respiration markedly increased in response to the oxygation treatments. The O 2 concentration in the crop root zone increased by 2.4–32.6%, for oxygation compared to control at the same depth. The soil respiration increased by 42–100%. The number of wheat ears, leaf dry weight and total dry matter were significantly greater in Mazzei and Seair oxygation compared to the control. Fresh biomass of wheat increased by 11 and 8%, and dry weight of wheat increased by 8 and 3% in Mazzei and Seair oxygation treatments compared to the control, respectively. Likewise, the irrigation water use efficiency increased with oxygation compared to the control in wheat. The yield, WUE and number of other physiological parameters in wheat were enhanced in vertisol compared to ferrosol. The seed cotton yield in the tub experiment increased with oxygation by 14%, and significant differences for fresh biomass, dry matter and yield were also noted between oxygation and the control in the field. Lint yield and WUE both increased by 7% using Mazzei in the cotton field trial during 2008–09. There were significant effects of oxygation on pineapple fresh biomass, and dry matter weight, industry yield and a number of quality parameters were significantly improved. The total fruit yield and marketable increased by 17 and 4% and marketable WUE increased by 3% using Mazzei. Our data suggest that the benefits of oxygation are notable not only for dicotyledonous cotton but also for monocotyledonous wheat and pineapple representing different rooting morphologies and CO 2 fixation pathways.

Description: Aims The Amazon basin plays an important role in the global carbon budget. Interannual climate variability associated with El Niño can affect the Amazon ecosystem carbon balance. In recent years, studies have suggested that there are two different types of El Ninos: eastern-Pacific (EP) El Niño and central-Pacific (CP) El Niño. The impacts of two types of El Niño on the Amazon climate and Amazon ecosystem are analyzed in the study. Methods A composite method has been applied to highlight the common features for the EP- and CP-El Niño events using observational data, IPCC-AR4 model output. Potential impacts of the two different types of El Niño on ecosystem carbon sequestration over the Amazon have been investigated using a process-based biogeochemical model, the Biome–BioGeochemical Cycles model (Biome–BGC). Important Findings Below-normal rainfall is observed year round in northern, central and eastern Amazonia during EP-El Niño years. During CP-El Niño years, negative rainfall anomalies are observed in most of the Amazon during the austral summer wet season, while there is average or above-average precipitation in other seasons. EP- and CP-El Niño events produce strikingly different precipitation anomaly pattern in the tropical and subtropical Andes during the austral fall season: wetter conditions prevail during EP-El Niño years and drier conditions during CP-El Niño years. Temperatures are above-average year round throughout tropical South America during EP-El Niño events, especially during austral summer. During CP-El Niño events, average or slightly above-average temperatures prevail in the tropics, but these temperatures are less extreme than EP year's temperature except in austral fall. These precipitation and temperature anomalies influence ecosystem productivity and carbon sequestration throughout the Amazon. Using the Biome–BGC model, we find that net ecosystem production (NEP) in the EP-El Niño years is below average, in agreement with most previous studies; such results indicate that the Amazon region acts as a net carbon source to the atmosphere during EP-El Niño years. In the CP-El Niño years, NEP does not differ significantly from its climatological value, suggesting that the Amazon forest remains a carbon sink for the atmosphere. Thus, even if CP-El Niño events increase in frequency or amplitude under global warming climate as predicted in some Global Climate Models, the Amazon rainforest may remain a carbon sink to the atmosphere during El Niño years in the near future.

Description: A histochemical and ultrastructural study of the crop and oesophagus was carried out for the first time in Aglajidae. In Philinopsis depicta , the hind region of the crop contains two large folds creating a channel between them, lined by a ciliated epithelium. This ciliated groove continues through the posterior oesophagus. In addition to these larger folds, both crop and posterior oesophagus present many smaller longitudinal ridges lined by a nonciliated epithelium formed by cells bearing microvilli embedded in a layer of extracellular material. Lysosomes and mitochondria are common in the supranuclear region of these cells, and in the basal region hemidesmosomes are frequent. Epithelial secretory cells contain many large vesicles with a low electron-density content rich in acid polysaccharides, but without detectable amounts of protein. The basal region of the secretory cells comprises the nucleus and several Golgi stacks formed by many flat cisternae with low electron-density content. Secretory cells were not observed in the ciliated epithelium of the channel between the two large folds. The connective tissue of the crop and posterior oesophagus contains many large vacuolar cells with a thin layer of cytoplasm around the single vacuole that occupies about 90% or more of the cell volume. Tubular invaginations of the cell membrane are frequent in these cells and some also contain large vesicles that can open to the central vacuole, suggesting an intense transport activity across the cytoplasm. These vacuolar cells could be related to the calcium cells reported in the connective tissue of other gastropods. Ultrastructural and histochemical studies of the organs of the digestive system in carnivorous and herbivorous cephalaspideans can lead to the discovery of important unknown features, like the vacuolar cells, which might be useful to establish correlations with molecular phylogenetic data or food sources.

Description: Forming a small group of mainly marine meiofaunal slugs, the Acochlidia have recently been separated from the traditional opisthobranch gastropods and placed within a mixed clade of pulmonates, Sacoglossa and Pyramidelloidea on the basis of molecular data. In the light of this new phylogenetic framework, we examined several populations of a comparatively giant Strubellia (Acochlidiidae s. l. ) found in rivers of the Solomon Islands and Vanuatu, combining microanatomical and molecular methods (interactive three-dimensional models are given in the online version). Novel features include an extended set of nerves, a ‘cephalic gland’ of unknown function and an osphradium, all detected here for the first time in Acochlidia. The protandric genital system is characterized by three receptacles in the male phase, a possibly secondary open seminal groove and a complete reduction of the elaborate cephalic copulatory apparatus during ontogeny. Combined evidence from copulatory features and DNA sequences indicate a specific separation between the type species S. paradoxa (Strubell, 1892) from Ambon and the eastern Melanesian Strubellia wawrai n. sp. Live observations show the species to feed on the highly mineralized egg capsules of limnic Neritidae using a special piercing radula. Limnic Pacific acochlidians are suggested to be amphidromic, as are their prey organisms. A unique type of adhesive larva, observed in an Acochlidium species, indicates a possible dispersive stage in Acochlidiidae. Molecular phylogeny confirms the morphology-based placement of Strubellia as sister taxon to other Acochlidiidae.