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  • 1
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    Non-synchronous deposition of North Atlantic Ash Zone II in Greenland ice cores, and North Atlantic and Norwegian Sea sediments: an example of complex glacial-stage tephra transport (2011)
    Wiley
    In:  Journal of Quaternary Science, 26 (7). pp. 739-745.
    Details
    Publication Date: 2020-07-20
    Description: Tephra provides regional chronostratigraphical marker horizons that can link different climate archives with highly needed accuracy and precision. The results presented in this work exemplify, however, that the intermittent storage of tephra in ice sheets and during its subsequent iceberg transport, especially during glacial stages, constitutes a potential source of serious error for the application of tephrochronology to Nordic Seas and North Atlantic sediment archives. The peak shard concentration of the rhyolitic component of the North Atlantic Ash Zone II (NAAZ-II) tephra complex, often used to correlate marine and ice core records in Marine Isotope Stage (MIS) 3, is shown to lag the eruption event by ca. 100–400 years in some North Atlantic and Norwegian Sea cores. While still allowing for a correlation of archives on millennial timescales, this time delay in deposition is a major obstacle when addressing the lead–lag relationship on short timescales (years to centuries). A precise and accurate determination of lead–lag relationships between archives recording different parts of the climate system is crucial in order to test hypotheses about the processes leading to abrupt climate change and to evaluate results from climate models. Copyright # 2011 John Wiley & Sons, Ltd.
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  • 2
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    Atmospheric stability and turbulence fluxes at Horns Rev-an intercomparison of sonic, bulk and WRF model data (2011)
    Wiley
    In:  Wind Energy, 15 (5). pp. 717-731.
    Details
    Publication Date: 2017-03-22
    Description: Direct estimations of turbulent fluxes and atmospheric stability were performed from a sonic anemometer at 50 m height on a meteorological mast at the Horns Rev wind farm in the North Sea. The stability and flux estimations from the sonic measurements are compared with bulk results from a cup anemometer at 15 m height and potential temperature differences between the water and the air above. Surface flux estimations from the advanced weather research and forecast (WRF) model are also validated against the sonic and bulk data. The correlation between the sonic and bulk estimates of friction velocity is high and the highest among all velocity comparisons. From the sonic–bulk–WRF inter-comparison, it is found that the atmospheric stability measures at the sonic height tend to be closer to the neutral value than the WRF and bulk estimates, which are performed within an air layer closer to the surface, not only from a systematic bulk and WRF under-prediction of the friction velocity when compared with the sonic value but also because of the lower magnitude of the sonic heat flux compared with that from the WRF simulations. Although they are not measured but parameterized or estimated, the bulk–WRF comparisons of friction velocity and 10 m wind speed show good agreement. It is also shown that on a long-term basis, the WRF and bulk estimates of stability are nearly equal and that a correction towards a slightly stable atmospheric condition has to be applied to the long-term wind profile at Horns Rev and at other locations over the North Sea, the correction being larger for points close to the coast.
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  • 3
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    Selective removal of human DNA from metagenomic DNA samples extracted from dental plaque (2011)
    Wiley
    In:  Journal of Basic Microbiology, 51 (4). pp. 442-446.
    Details
    Publication Date: 2018-01-31
    Description: Metagenomic techniques are used to analyse bacterial communities allowing both culturable and unculturable species to be represented. However, the screening of oral metagenomic samples can be hindered by high animal host DNA content. This study evaluated methods for the reduction of human DNA concentrations within oral metagenomic samples. Plaque samples were collected from 27 patients presenting with periodontal disease and treated to remove human DNA using either selective lysis of eukaryotic cells at several buffer concentrations or differential centrifugation after treatment with trypsin and/or detergents. Human and bacterial DNA levels were determined by quantitative polymerase chain reaction (qPCR). The human DNA content of plaque extracts was significantly reduced by all treatments compared with an untreated control (P 〈 0.05). However, differential centrifugation simultaneously reduced the bacterial DNA content unless samples were pretreated with a detergent. Observations of Gram stained samples that were processed using differential centrifugation without detergent suggest that many bacteria remain adhered to human cells. An approach that uses differential centrifugation in parallel with selective lysis is recommended to fully represent the oral microbiota in metagenomic samples, including those tightly adhered to human cells and more delicate bacteria such as Mycoplasma.
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  • 4
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    Global analysis of satellite tracking data shows that adult green turtles are significantly aggregated in Marine Protected Areas (2012)
    Wiley
    In:  Global Ecology and Biogeography, 21 (11). pp. 1053-1061.
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    Publication Date: 2017-12-14
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  • 5
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    Driving forces behind the biotope structures in two low-temperature hydrothermal venting sites on the southern Mid-Atlantic Ridge (2011)
    Wiley
    In:  Environmental Microbiology Reports, 3 (6). pp. 727-737.
    Details
    Publication Date: 2018-07-18
    Description: Although it has been more than 30 years since the discovery of deep-sea hydrothermal vents, comprehending the interconnections between hydrothermal venting and microbial life remains a challenge. Here we investigate abiotic-biotic linkages in low-temperature hydrothermal biotopes at Desperate and Lilliput on the southern Mid-Atlantic Ridge. Both sites are basalt-hosted and fluids exhibit the expected chemical signatures. However, contrasting crustal permeabilities have been proposed, supporting pervasive mixing at Desperate but restricting circulation at Lilliput. In Desperate fluids, sulfide and O2 were readily available but H2 hardly detectable. Under incubation conditions (oxic unamended, sulfide-spiked, oxic and anoxic H2 -spiked at 18°C), only sulfide oxidation by Thiomicrospira fuelled biomass synthesis. Microbial phylogenies from Desperate incubation experiments resembled those of the natural samples suggesting that the incubation conditions mimicked the environment. In Lilliput fluids, O2 was limited, whereas sulfide and H2 were enriched. Autotrophy appeared to be stimulated by residual sulfide and by amended H2 . Yet, based on bacterial phylogenies only conditions in anoxic H2 -spiked Lilliput incubations appeared similar to parts of the Lilliput habitat. In anoxic H2 -spiked Lilliput enrichments Campylobacteraceae likely supported biomass production through H2 oxidation. We argue that the diverging circulation patterns arising from different subseafloor permeabilities act as major driving forces shaping these biotope structures.
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  • 6
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    Comparison of cyanobacterial and green algal growth rates at different temperatures (2012)
    Wiley
    In:  Freshwater Biology, 58 (3). pp. 552-559.
    Details
    Publication Date: 2018-01-29
    Description: 1. The hypothesis that cyanobacteria have higher optimum growth temperatures and higher growth rates at the optimum as compared to chlorophytes was tested by running a controlled experiment with eight cyanobacteria species and eight chlorophyte species at six different temperatures (20–35 °C) and by performing a literature survey. 2. In the experiment, all organisms except the chlorophyte Monoraphidium minutum grew well up to 35 °C. The chlorophyte Chlamydomonas reinhardtii was the fastest-growing organism over the entire temperature range (20–35 °C). 3. Mean optimum growth temperatures were similar for cyanobacteria (29.2 °C) and chlorophytes (29.2 °C). These results are concordant with published data, yielding slightly higher mean optimum growth temperatures for cyanobacteria (27.2 °C) than for chlorophytes (26.3 °C). 4. Mean growth rates of cyanobacteria at 20 °C (0.42 day−1) were significantly lower than those of chlorophytes at 20 °C (0.62 day−1). However, at all other temperatures, there were no differences between mean growth rates of cyanobacteria and chlorophytes. 5. Mean growth rates at the optimum temperature were similar for cyanobacteria (0.92 day−1) and chlorophytes (0.96 day−1). However, analysis of published data revealed that growth rates of cyanobacteria (0.65 day−1) were significantly lower than those of chlorophytes (0.93 day−1) at their optimum temperatures. 6. Although climate warming will probably lead to an intensification of cyanobacterial blooms, our results indicate that this might not be as a result of higher growth rates of cyanobacteria compared with their chlorophyte competitors. The competitive advantage of cyanobacteria can more likely be attributed to their ability to migrate vertically and prevent sedimentation in warmer and more strongly stratified waters and to their resistance to grazing, especially when warming reduces zooplankton body size.
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  • 7
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    Varying sediment sources (Hudson Strait, Cumberland Sound, Baffin Bay) to the NW Labrador Sea slope between and during Heinrich events 0 to 4 (2012)
    Wiley
    In:  Journal of Quaternary Science, 27 (5). pp. 475-484.
    Details
    Publication Date: 2020-07-20
    Description: Core HU97048-007PC was recovered from the continental Labrador Sea slope at a water depth of 945 m, 250km seaward from the mouth of Cumberland Sound, and 400km north of Hudson Strait. Cumberland Sound is a structural trough partly floored by Cretaceous mudstones and Paleozoic carbonates. The record extends from 10 to 58 ka. On-board logging revealed a complex series of lithofacies, including buff-colored detrital carbonate-rich sediments [Heinrich (H)-events] frequently bracketed by black facies. We investigate the provenance of these facies using quantitative X-ray diffraction on drill-core samples from Paleozoic and Cretaceous bedrock from the SE Baffin Island Shelf, and on the〈2-mm sediment fraction in a transect of five cores from Cumberland Sound to the NW Labrador Sea. A sediment unmixing program was used to discriminate between sediment sources, which included dolomite-rich sediments from Baffin Bay, calcite-rich sediments from Hudson Strait and discrete sources from Cumberland Sound. Results indicated that the bulk of the sediment was derived from Cumberland Sound, but Baffin Bay contributed to sediments coeval with H-0 (Younger Dryas), whereas Hudson Strait was the source during H-events 1–4. Contributions from the Cretaceous outcrops within Cumberland Sound bracket H-events, thus both leading and lagging Hudson Strait-sourced H-events.
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  • 8
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    On the role of particle breakage in the shear failure behavior of granular soils by DEM (2011)
    Wiley
    In:  International Journal for Numerical and Analytical Methods in Geomechanics, 37 (8). pp. 832-854.
    Details
    Publication Date: 2018-04-11
    Description: This article presents a fundamental study on the role of particle breakage on the shear behavior of granular soils using the three-dimensional (3-D) discrete element method. The effects of particle breakage on the stress ratio, volumetric strain, plastic deformation, and shear failure behavior of dense crushable specimens undergoing plane strain shearing conditions are thoroughly investigated through a variety of micromechanical analyses and mechanism demonstrations. The simulation of a granular specimen is based on the effective modeling of realistic fracture behavior of single soil particles, which is demonstrated by the qualitative agreement between the results from platen compression simulations and those from physical laboratory tests. The simulation results show that the major effects of particle breakage include the reduction of volumetric dilation and peak stress ratio and more importantly the plastic deformation mechanisms and the shear failure modes vary as a function of soil crushability. Consistent macro- and micromechanical evidence demonstrates that shear banding and massive volumetric contraction depict the two end failure modes of a dense specimen, which is dominated by particle rearrangement–induced dilation and particle crushing–induced compression, respectively, with a more general case being the combination and competition of the two failure modes in the medium range of soil crushability and confining stress. However, it is further shown that a highly crushable specimen will eventually develop a shear band at a large strain because of the continuous decay of particle breakage.
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  • 9
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    Equatorial upper-ocean dynamics and their interaction with the West African monsoon (2011)
    Wiley
    In:  Atmospheric Science Letters, 12 . pp. 24-30.
    Details
    Publication Date: 2021-05-18
    Description: Zonal wind anomalies in the western equatorial Atlantic during late boreal winter to early summer precondition boreal summer cold/warm events in the eastern equatorial Atlantic (EEA) that manifest in a strong interannual Atlantic cold tongue (ACT) variability. Local intraseasonal wind fluctuations, linked to the St. Helena anticyclone, contribute to the variability of cold tongue onset and strength, particularly during years with preconditioned shallow thermoclines. The impact of cold tongue sea surface temperature (SST) anomalies on the wind field in the Gulf of Guinea is assessed. It contributes to the northward migration of humidity and convection and possibly the West African monsoon (WAM) jump. Copyright @ 2010 Royal Meteorological Society
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  • 10
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    Epibacterial community patterns on marine macroalgae are host-specific but temporally variable (2011)
    Wiley
    In:  Environmental Microbiology, 13 (3). pp. 655-665.
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    Publication Date: 2019-09-23
    Description: Marine macroalgae are constantly exposed to epibacterial colonizers. The epiphytic bacterial patterns and their temporal and spatial variability on host algae are poorly understood. To investigate the interaction between marine macroalgae and epiphytic bacteria, this study tested if the composition of epibacterial communities on different macroalgae was specific and persisted under varying biotic and abiotic environmental conditions over a 2-year observation time frame. Epibacterial communities on the co-occurring macroalgae Fucus vesiculosus, Gracilaria vermiculophylla and Ulva intestinalis were repeatedly sampled in summer and winter of 2007 and 2008. The epibacterial community composition was analysed by denaturing gradient gel electrophoresis (DGGE) and 16S rRNA gene libraries. Epibacterial community profiles did not only differ significantly at each sampling interval among algal species, but also showed consistent seasonal differences on each algal species at a bacterial phylum level. These compositional patterns re-occurred at the same season of two consecutive years. Within replicates of the same algal species, the composition of bacterial phyla was subject to shifts at the bacterial species level, both within the same season but at different years and between different seasons. However, 7–16% of sequences were identified as species specific to the host alga. These findings demonstrate that marine macroalgae harbour species-specific and temporally adapted epiphytic bacterial biofilms on their surfaces. Since several algal host-specific bacteria were highly similar to other bacteria known to either avoid subsequent colonization by eukaryotic larvae or to exhibit potent antibacterial activities, algal host-specific bacterial associations are expected to play an important role for marine macroalgae.
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  • 11
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    An example of meso-scale hydrographic features in the central Baltic Sea and their influence on the distribution and vertical migration of sprat, Sprattus sprattus balticus (Schn.) (2011)
    Wiley
    In:  Fisheries Oceanography, 20 (1). pp. 82-88.
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    Publication Date: 2017-01-09
    Description: A wind-driven meso-scale pattern of temperature, salinity and oxygen was found along a transect in the northern Bornholm Basin (southern Baltic Sea). Strong winds caused currents along this transect, which shifted cold intermediate water (minimum: 3.6C) towards the south. The transect was surveyed with a towed CTD-system and hydroacoustics in parallel to investigate the distribution of sprat, Sprattus sprattus balticus (Schn.) in relation to the observed meso-scale pattern. In those parts of the transect where the cold intermediate water was observed, sprat were restricted to water layers below the halocline. In other parts of the transect, sprat moved into higher water layers and occupied a wider depth range. The important factor was temperature, which set an upper limit to the vertical sprat distribution. The development of hydrography, as measured in the field, was evaluated with a hydrodynamic model.
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  • 12
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    Synergies between climate anomalies and hydrological modifications facilitate estuarine biotic invasions (2011)
    Wiley
    In:  Ecology Letters, 14 . pp. 749-757.
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    Publication Date: 2017-02-23
    Description: Environmental perturbation, climate change and international commerce are important drivers for biological invasions. Climate anomalies can further increase levels of habitat disturbance and act synergistically to elevate invasion risk. Herein, we use a historical data set from the upper San Francisco Estuary to provide the first empirical evidence for facilitation of invasions by climate extremes. Invasive zooplankton species did not become established in this estuary until the 1970s when increasing propagule pressure from Asia coincided with extended drought periods. Hydrological management exacerbated the effects of post-1960 droughts and reduced freshwater inflow even further, increasing drought severity and allowing unusually extreme salinity intrusions. Native zooplankton experienced unprecedented conditions of high salinity and intensified benthic grazing, and life history attributes of invasive zooplankton were advantageous enough during droughts to outcompete native species and colonise the system. Extreme climatic events can therefore act synergistically with environmental perturbation to facilitate the establishment of invasive species.
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  • 13
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    Climate change and the phytoplankton spring bloom: warming and overwintering zooplankton have similar effects on phytoplankton (2011)
    Wiley
    In:  Global Change Biology, 17 (1). pp. 154-162.
    Details
    Publication Date: 2018-05-17
    Description: Indoor mesocosms were used to study the combined effect of warming and of different densities of overwintering mesozooplankton (mainly copepods) on the spring development of phytoplankton in shallow, coastal waters. Similar to previous studies, warming accelerated the spring phytoplankton peak by ca. 1 day 1C1 whereas zooplankton did not significantly influence timing. Phytoplankton biomass during the experimental period decreased with warming and with higher densities of overwintering zooplankton. Similarly, average cell size and average effective particle size (here: colony size) decreased both with zooplankton density and warming. A decrease in phytoplankton particle size is generally considered at typical footprint of copepod grazing. We conclude that warming induced changes in the magnitude and structure of the phytoplankton spring bloom cannot be understood without considering grazing by overwintering zooplankton.
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  • 14
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    Changes in climate and weather extremes in the 21st century (2012)
    Wiley
    In:  Wiley Interdisciplinary Reviews: Climate Change, 3 (2). pp. 115-129.
    Details
    Publication Date: 2015-10-06
    Description: Climate and weather extremes are sporadically recurring events that may have major local or regional impacts on the society and the environment. These events are typically related to unusually high or low temperature, prolonged dry or wet conditions, heavy precipitation, or extreme winds. Extreme events are part of the overall climate and weather alongside average conditions and variability, and thus are not unexpected as such. Climate change is expected to affect not only means but also variability and extremes. Some inferences can be based on past and present observations, but analyses of especially rare events are hampered by the availability of long time series. Over time, depending on how far the on-going global warming takes us from the present and the past climate conditions, the weather and climate statistics may well come to shift in ways that are well outside observational data. This may lead to shifts in frequency, intensity and geographical distribution of different extremes. Indeed, projected changes in some extremes over the 21st century are quite robust, such as generally increasing warm and decreasing cold extremes. Possible changes in some other aspects, for example storms, remain much more uncertain. Science-based information both on robust findings and on relevant uncertainties on changing extremes can provide useful information for sectorial planning, disaster risk prevention and overall reduction of societal vulnerability related to climate and weather
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  • 15
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    Smoking and pathogenesis of psoriasis: a review of oxidative, inflammatory and genetic mechanisms (2011)
    Wiley
    In:  British Journal of Dermatology, 165 (6). pp. 1162-1168.
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    Publication Date: 2020-06-26
    Description: Recent studies suggest that cigarette smoking may trigger the development of psoriasis through oxidative, inflammatory and genetic mechanisms. Smoking initiates formation of free radicals that stimulate cell signalling pathways active in psoriasis including mitogen-activated protein kinase (MAPK), nuclear factor-κB (NF-κB) and Janus kinase/signal transducers and activators of transcription (JAK-STAT). Smoking damages the skin by increasing formation of reactive oxygen species and decreasing the gene expression of antioxidants. Nicotine also stimulates innate immune cells integral to the pathogenesis of psoriasis including dendritic cells, macrophages and keratinocytes. These cells release cytokines that activate T lymphocytes and perpetuate a cycle of chronic inflammation. Smoking also enhances expression of genes known to confer an increased risk of psoriasis, including HLA-Cw6, HLA-DQA1*0201 and CYP1A1. Improved understanding of the possible link between smoking and psoriasis pathogenesis may provide further insight into mechanisms underlying smoking, psoriasis and risk of subsequent cardiovascular disease.
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  • 16
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    On the spatial scale of dispersal in coral reef fishes (2012)
    Wiley
    In:  Molecular Ecology, 21 (23). pp. 5675-5688.
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    Publication Date: 2015-09-14
    Description: Marine biologists have gone through a paradigm shift, from the assumption that marine populations are largely ‘open’ owing to extensive larval dispersal to the realization that marine dispersal is ‘more restricted than previously thought’. Yet, population genetic studies often reveal low levels of genetic structure across large geographic areas. On the other side, more direct approaches such as mark-recapture provide evidence of localized dispersal. To what extent can direct and indirect studies of marine dispersal be reconciled? One approach consists in applying genetic methods that have been validated with direct estimates of dispersal. Here, we use such an approach—genetic isolation by distance between individuals in continuous populations—to estimate the spatial scale of dispersal in five species of coral reef fish presenting low levels of genetic structure across the Caribbean. Individuals were sampled continuously along a 220-km transect following the Mesoamerican Barrier Reef, population densities were estimated from surveys covering 17 200 m2 of reef, and samples were genotyped at a total of 58 microsatellite loci. A small but positive isolation-by-distance slope was observed in the five species, providing mean parent-offspring dispersal estimates ranging between 7 and 42 km (CI 1–113 km) and suggesting that there might be a correlation between minimum/maximum pelagic larval duration and dispersal in coral reef fishes. Coalescent-based simulations indicate that these results are robust to a variety of dispersal distributions and sampling designs. We conclude that low levels of genetic structure across large geographic areas are not necessarily indicative of extensive dispersal at ecological timescales.
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  • 17
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    Estimating parameters for a stochastic dynamic marine ecological system (2011)
    Wiley
    In:  Environmetrics, 22 (4). pp. 501-515.
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    Publication Date: 2020-07-31
    Description: Parameter estimation for stochastic dynamic systems is a core problem for the environmental and ecological sciences. This study considers parameter estimation for a simple nonlinear numerical model of marine biogeochemistry. We present a nonlinear stochastic differential equation based model for estimating parameters from non-Gaussian ocean measurements collected at a coastal ocean observatory. A sequential Monte Carlo procedure, or particle filter, provides for estimation of the time evolving state and also the basis for parameter estimation. Two approaches for estimating static parameters of the system are contrasted. The first is based on likelihood calculations, and the second on augmenting the system state with the static parameters. Sensitivity analysis identified two ecological parameters (in the differential equations model) and one statistical parameter (governing the level of dynamical noise) as candidates for estimation. Computed likelihood surfaces were found to be rough due to the sample based calculations; they also indicated the ubiquitous problem of ecological parameter dependence and identifiability. A modified state augmentation procedure, incorporating a smoothed bootstrap step, was used here for parameter estimation. Realizations for the parameter values provided by this method allowed for calculation of moments and density estimates that matched well the properties of the likelihood. Incorporation of prior information on the parameters was also considered within this context. It is concluded that such a modified state augmentation procedures provides a promising avenue in parameter estimation in numerical models
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  • 18
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    An (U-Th)/He age for the shallow-marine Wetumpka impact structure, Alabama, USA (2012)
    Wiley
    In:  Meteoritics & Planetary Science, 47 (8). pp. 1243-1255.
    Details
    Publication Date: 2020-07-01
    Description: Single crystal (U-Th)/He dating was applied to 24 apatite and 23 zircon grains from the Wetumpka impact structure, Alabama, USA. This small approximately 5–7.6 km impact crater was formed in a shallow marine environment, with no known preserved impact melt, thus offering a challenge to common geochronological techniques. A mean (U-Th)/He apatite and zircon age of 84.4 ± 1.4 Ma (2σ) was obtained, which is within error of the previously estimated Late Cretaceous impact age of approximately 83.5 Ma. In addition, helium diffusion modeling of apatite and zircon grains during fireball/contact, shock metamorphism, and hydrothermal events was undertaken, to show the influence of these individual thermal processes on resetting (U-Th)/He ages in the Wetumpka samples. This study has shown that the (U-Th)/He geochronological technique has real potential for dating impact structures, especially smaller and eroded impact structures that lack impact melt lithologies.
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  • 19
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    A framework for 3-D joint inversion of MT, gravity and seismic refraction data (2011)
    Wiley
    In:  Geophysical Journal International, 184 (1). pp. 477-493.
    Details
    Publication Date: 2018-07-10
    Description: We present a 3-D joint inversion framework for seismic, magnetotelluric (MT) and scalar and tensorial gravity data. Using large-scale optimization methods, parallel forward solvers and a flexible implementation in terms of model parametrization allows us to investigate different coupling approaches for the various physical parameters involved in the joint inversion. Here we compare two different coupling approaches, direct parameter coupling where we calculate conductivities and densities from seismic slownesses and cross-gradient coupling, where each model cell has an independent value for each physical property and a structural similarity is enforced through a term in the objective function. For both types of approaches we see an improvement of the inversion results over single inversions when the inverted data sets are generated from compatible models. As expected the direct coupling approach results in a stronger interaction between the data sets and in this case better results compared to the cross-gradient coupling. In contrast, when the inverted MT data is generated from a model that violates the parameter relationship in some regions but conforms with the cross-gradient assumptions, we obtain good results with the cross-gradient approach, while the direct coupling approach results in spurious features. This makes the cross-gradient approach the first choice for regions were a direct relationship between the physical parameters is unclear.
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  • 20
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    Ocean acidification weakens the structural integrity of coralline algae (2012)
    Wiley
    In:  Global Change Biology, 18 (9). pp. 2804-2812.
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    Publication Date: 2018-05-17
    Description: The uptake of anthropogenic emission of carbon dioxide is resulting in a lowering of the carbonate saturation state and a drop in ocean pH. Understanding how marine calcifying organisms such as coralline algae may acclimatize to ocean acidification is important to understand their survival over the coming century. We present the first long-term perturbation experiment on the cold-water coralline algae, which are important marine calcifiers in the benthic ecosystems particularly at the higher latitudes. Lithothamnion glaciale, after three months incubation, continued to calcify even in undersaturated conditions with a significant trend towards lower growth rates with increasing pCO2. However, the major changes in the ultra-structure occur by 589 μatm (i.e. in saturated waters). Finite element models of the algae grown at these heightened levels show an increase in the total strain energy of nearly an order of magnitude and an uneven distribution of the stress inside the skeleton when subjected to similar loads as algae grown at ambient levels. This weakening of the structure is likely to reduce the ability of the alga to resist boring by predators and wave energy with severe consequences to the benthic community structure in the immediate future (50 years).
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  • 21
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    Synergistic effects of ocean acidification and warming on overwintering pteropods in the Arctic (2012)
    Wiley
    In:  Global Change Biology, 18 (12). pp. 3517-3528.
    Details
    Publication Date: 2018-05-17
    Description: Ocean acidification and warming will be most pronounced in the Arctic Ocean. Aragonite shell-bearing pteropods in the Arctic are expected to be among the first species to suffer from ocean acidification. Carbonate undersaturation in the Arctic will first occur in winter and because this period is also characterized by low food availability, the overwintering stages of polar pteropods may develop into a bottleneck in their life cycle. The impacts of ocean acidification and warming on growth, shell degradation (dissolution), and mortality of two thecosome pteropods, the polar Limacina helicina and the boreal L. retroversa, were studied for the first time during the Arctic winter in the Kongsfjord (Svalbard). The abundance of L. helicina and L. retroversa varied from 23.5 to 120 ind m−2 and 12 to 38 ind m−2, and the mean shell size ranged from 920 to 981 μm and 810 to 823 μm, respectively. Seawater was aragonite-undersaturated at the overwintering depths of pteropods on two out of ten days of our observations. A 7-day experiment [temperature levels: 2 and 7 °C, pCO2 levels: 350, 650 (only for L. helicina) and 880 μatm] revealed a significant pCO2 effect on shell degradation in both species, and synergistic effects between temperature and pCO2 for L. helicina. A comparison of live and dead specimens kept under the same experimental conditions indicated that both species were capable of actively reducing the impacts of acidification on shell dissolution. A higher vulnerability to increasing pCO2 and temperature during the winter season is indicated compared with a similar study from fall 2009. Considering the species winter phenology and the seasonal changes in carbonate chemistry in Arctic waters, negative climate change effects on Arctic thecosomes are likely to show up first during winter, possibly well before ocean acidification effects become detectable during the summer season.
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  • 22
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    Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome (2011)
    Wiley
    In:  PROTEOMICS, 11 (9). pp. 1814-1823.
    Details
    Publication Date: 2020-06-15
    Description: he use and development of post-genomic tools naturally depends on large-scale genome sequencing projects. The usefulness of post-genomic applications is dependent on the accuracy of genome annotations, for which the correct identification of intron-exon borders in complex genomes of eukaryotic organisms is often an error-prone task. Although automated algorithms for predicting intron-exon structures are available, supporting exon evidence is necessary to achieve comprehensive genome annotation. Besides cDNA and EST support, peptides identified via MS/MS can be used as extrinsic evidence in a proteogenomic approach. We describe an improved version of the Genomic Peptide Finder (GPF), which aligns de novo predicted amino acid sequences to the genomic DNA sequence of an organism while correcting for peptide sequencing errors and accounting for the possibility of splicing. We have coupled GPF and the gene finding program AUGUSTUS in a way that provides automatic structural annotations of the Chlamydomonas reinhardtii genome, using highly unbiased GPF evidence. A comparison of the AUGUSTUS gene set incorporating GPF evidence to the standard JGI FM4 (Filtered Models 4) gene set reveals 932 GPF peptides that are not contained in the Filtered Models 4 gene set. Furthermore, the GPF evidence improved the AUGUSTUS gene models by altering 65 gene models and adding three previously unidentified genes.
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  • 23
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    Mantle subducting slab structure in the region of the 2010 M8.8 Maule earthquake (30-40°S), Chile (2012)
    Wiley
    In:  Geophysical Journal International, 191 (1). pp. 317-324.
    Details
    Publication Date: 2016-06-22
    Description: We present a new tomographic model of the mantle in the area of the 2010 M8.8 Maule earthquake and surrounding regions. Increased ray coverage provided by the aftershock data allows us to image the detailed subducting slab structure in the mantle, from the region of flat slab subduction north of the Maule rupture to the area of overlapping rupture between the 1960 M9.5 and the 2010 M8.8 events to the south. We have combined teleseismic primary and depth phase arrivals with available local arrivals to better constrain the teleseismic earthquake locations in the region, which we use to conduct nested regional–global tomography. The new model reveals the detailed structure of the flat slab and its transition to a more moderately dipping slab in the Maule region. South of the Maule region, a steeply dipping relic slab is imaged from ∼200 to 1000 km depth that is distinct from the moderately dipping slab above it and from the more northerly slab at similar depths. We interpret the images as revealing both horizontal and vertical tearing of the slab at ∼38°S to explain the imaged pattern of slab anomalies in the southern portion of the model. In contrast, the transition from a horizontal to moderately subducting slab in the northern portion of the model is imaged as a continuous slab bend. We speculate that the tearing was most likely facilitated by a fracture zone in the downgoing plate or alternatively by a continental scale terrane boundary in the overriding plate.
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  • 24
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    Experimental systems in aquatic ecology (2012)
    Wiley
    In:  In: eLS Citable Reviews in the Life Sciences [Encyclopedia of Life Sciences]. Wiley, ..
    Details
    Publication Date: 2014-01-30
    Description: The main experimental approaches in aquatic community and ecosystem ecology will be presented along a gradient of scale: unenclosed field experiments, mesocosms with a natural mix of species, microcosms with an artificial mixture of species from cultures, and single species experiments in batch and continuous culture. Experimental manipulations usually consist of the addition or removal of (supposed) key organisms, addition of chemicals or alterations of the physical environment. Selecting the appropriate scale of experimentation is not only a question of technical and financial feasibility but also it has to consider the inevitable trade-offs between realism and control. Conclusions will be more widely accepted, if they are supported by experiments at a variety of scales. Key Concepts: The choice of the appropriate experimental scale has to face an inevitable trade-off between realism and control. Unenclosed field manipulations have the highest degree of realism but the least degree of control. Mesocosms operate with natural species assemblages, permit replication and control of experimental manipulations but are limited in temporal scale (weeks). Microcosm experiments operate with artificial communities assembled from cultures, offer a high degree of control, but lack the pre-history a mutual adaptation of the participating species. Experiments with single or few species rely on the 'model organism' concept. Small-scale experiments are biased against the detection of slow and space requiring processes.
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  • 25
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    Structural architecture of oceanic plateau subduction offshore Eastern Java and the potential implications for geohazards (2011)
    Wiley
    In:  Geophysical Journal International, 184 . pp. 12-28.
    Details
    Publication Date: 2018-07-10
    Description: The region offshore Eastern Java represents one of the few places where the early stage of oceanic plateau subduction is occurring. We study the little investigated Roo Rise oceanic plateau on the Indian plate, subducting beneath Eurasia. The presence of the abnormal bathymetric features entering the trench has a strong effect on the evolution of the subduction system, and causes additional challenges on the assessment of geohazard risks. We present integrated results of a refraction/wide-angle reflection tomography, gravity modelling, and multichannel reflection seismic imaging using data acquired in 2006 south of Java near 113°E. The composite structural model reveals the previously unresolved deep geometry of the oceanic plateau and the subduction zone. The oceanic plateau crust is on average 15 km thick and covers an area of about 100 000 km2. Within our profile the Roo Rise crustal thickness ranges between 18 and 12 km. The upper oceanic crust shows high degree of fracturing, suggesting heavy faulting. The forearc crust has an average thickness of 14 km, with a sharp increase to 33 km towards Java, as revealed by gravity modelling. The complex geometry of the backstop suggests two possible models for the structural formation within this segment of the margin: either accumulation of the Roo Rise crustal fragments above the backstop or alternatively uplift of the backstop caused by basal accumulation of crustal fragments. The subducting plateau is affecting the stress field within the accretionary complex and the backstop edge, which favours the initiation of large, potentially tsunamogenic earthquakes such as the 1994 Mw= 7.8 tsunamogenic event.
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  • 26
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    Quantification of free gas in the Kumano fore-arc basin detected from borehole physical properties: IODP NanTroSEIZE drilling Site C0009 (2011)
    Wiley
    In:  Geochemistry, Geophysics, Geosystems, 12 . Q0AD06.
    Details
    Publication Date: 2020-07-31
    Description: The Kumano fore-arc basin overlies the Nankai accretionary prism, formed by the subduction of the Philippine Sea Plate beneath the Eurasian plate offshore the Kii Peninsula, SW Honshu, Japan. Seismic surveys and boreholes within the framework of the Nankai Trough Seismogenic Zone Experiment (NanTroSEIZE) project show evidence of gas hydrates and free gas within the basin. Here we use high-quality borehole sonic data from Integrated Oceanic Drilling Program (IODP) Site C0009 to quantify the free gas distribution in the landward part of the basin. The Brie theory is used to quantify gas content from sonic logs, which are calibrated from laboratory measurements on drill cores. First, we show that the sonic data are mainly sensitive to the fluid phase filling the intergranular pores (effective porosity), rather than to the total porosity that includes water bound to clay minerals. We then compare the effective porosity to lithodensity-derived porosity that acts as a proxy for total porosity. The combination of these two data sets also allows assessment of clay mineralogy of the sediments. Second, we compute free gas saturation and find a gas-rich interval that is restricted to a lithological unit characterized by a high abundance of wood fragments and lignite. This unit, at the base of the fore-arc basin, is a hydrocarbon source that should be taken into account in models explaining gas distribution and the formation of the bottom-simulating reflector within the Kumano fore-arc basin.
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  • 27
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    Approximations for the 2-D coast effect on marine magnetotelluric data (2012)
    Wiley
    In:  Geophysical Journal International, 189 . pp. 357-368.
    Details
    Publication Date: 2019-09-23
    Description: Marine natural source electromagnetic data acquired on continental margins are often of considerable scientific and commercial interest. However, the large conductivity contrast between the ocean and coast causes this type of data to be severely distorted. For a 2-D coastal model, this distortion is most pronounced for the marine magnetotelluric and geomagnetic response function derived from induced currents flowing parallel to the coast. A maximal distortion occurs for a given period at a specific distance from the coast and causes severe anomalies in the magnitude and phase of the response functions. Based on a modelling study, we empirically relate the characteristic period and characteristic distance to physical parameters such as the ocean depth and the host resistivity. Based on a simple analytical approach, we test these approximations and show that maximum distortion occurs when destructive interference between the ocean and host response is at its highest. While the coast effect causes a large distortion in the marine responses we show through a resolution analysis that it does not mask subsurface conductivity anomalies but in fact increases the sensitivity to the seafloor.
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    Three dimensional lithospheric structure of the western continental margin of India constrained from gravity modelling: implication for tectonic evolution (2012)
    Wiley
    In:  Geophysical Journal International, 190 (1). pp. 131-150.
    Details
    Publication Date: 2019-01-22
    Description: This paper describes a 3-D lithospheric density model of the Western Continental Margin of India (WCMI) based on forward modelling of gravity data derived from satellite altimetry over the ocean and surface measurements on the Indian peninsula. The model covers the north-eastern Arabian Sea and the western part of the Indian Peninsula and incorporates constraints from a wide variety of geophysical and geological information. Salient features of the density model include: (1) the Moho depth varying from 13 km below the oceanic crust to 46 km below the continental interior; (2) the lithosphere–asthenosphere boundary (LAB) located at depths between 70 km in the southwestern corner (under oceanic crust) and about 165 km below the continental region; (3) thickening of the crust under the Chagos–Laccadive and Laxmi Ridges and (4) a revised definition of the continent–ocean boundary. The 3-D density structure of the region enables us to propose an evolutionary model of the WCMI that revisits earlier views of passive rifting. The first stage of continental-scale rifting of Madagascar from India at about 90 Ma is marked by relatively small amounts of magmatism. A second episode of rifting and large-scale magmatism was possibly initiated around 70 Ma with the opening of the Gop Rift. Subsequently at around 68 Ma, the drifting away of the Seychelles and formation of the Laxmi Ridge was a consequence of the down-faulting of the northern margin. During this second episode of rifting, the northern part of the WCMI witnessed massive volcanism attributed to interaction with the Reunion hotspot at around 65 Ma. Subsequent stretching of the transitional crust between about 65 and 62 Ma formed the Laxmi Basin, the southward extension of the failed Gop Rift. As the interaction between plume and lithosphere continued, the Chagos–Laccadive Ridge was emplaced on the edge of the nascent oceanic crust/rifted continental margin in the south as the Indian Plate was moving northwards.
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  • 29
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    Influence of Temperature, Hypercapnia, and Development on the Relative Expression of Different Hemocyanin Isoforms in the Common CuttlefishSepia officinalis (2012)
    Wiley
    In:  Journal of Experimental Zoology Part A: Ecological Genetics and Physiology, 317 (8). pp. 511-523.
    Details
    Publication Date: 2019-09-23
    Description: The cuttlefish Sepia officinalis expresses several hemocyanin isoforms with potentially different pH optima, indicating their reliance on efficient pH regulation in the blood. Ongoing ocean warming and acidification could influence the oxygen-binding properties of respiratory pigments in ectothermic marine invertebrates. This study examined whether S. officinalis differentially expresses individual hemocyanin isoforms to maintain optimal oxygen transport during development and acclimation to elevated seawater pCO2 and temperature. Using quantitative PCR, we measured relative mRNA expression levels of three different hemocyanin isoforms in several ontogenetic stages (embryos, hatchlings, juveniles, and adults), under different temperatures and elevated seawater pCO2. Our results indicate moderately altered hemocyanin expression in all embryonic stages acclimated to higher pCO2, while hemocyanin expression in hatchlings and juveniles remained unaffected. During the course of development, total hemocyanin expression increased independently of pCO2 or thermal acclimation status. Expression of isoform 3 is reported for the first time in a cephalopod in this study and was found to be generally low but highest in the embryonic stages (0.2% of total expression). Despite variable hemocyanin expression, hemolymph total protein concentrations remained constant in the experimental groups. Our data provide first evidence that ontogeny has a stronger influence on hemocyanin isoform expression than the environmental conditions chosen, and they suggest that hemocyanin protein abundance in response to thermal acclimation is regulated by post-transcriptional/translational rather than by transcriptional modifications
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    CO2 mediation of adverse effects of seawater acidification inCalcidiscus leptoporus (2011)
    Wiley
    In:  Geochemistry, Geophysics, Geosystems, 12 (5).
    Details
    Publication Date: 2020-07-31
    Description: The coccolithophore Calcidiscus leptoporus (strain RCC1135) was grown in dilute batch culture at CO2 levels ranging from similar to 200 to similar to 1600 mu atm. Increasing CO2 concentration led to an increased percentage of malformed coccoliths and eventually (at similar to 1500 mu atm CO2) to aggregation of cells. Carbonate chemistry of natural seawater was manipulated in three ways: first, addition of acid; second, addition of a IICO3-/CO32- solution; and third, addition of both acid and IICO3-/CO32- solution. The data set allowed the disentangling of putative effects of the different parameters of the carbonate system. It is concluded that CO2 is the parameter of the carbonate system which causes both aberrant coccolithogenesis and aggregation of cells.
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  • 31
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    Adult exposure influences offspring response to ocean acidification in oysters (2012)
    Wiley
    In:  Global Change Biology, 18 (1). pp. 82-92.
    Details
    Publication Date: 2014-10-08
    Description: It is essential to predict the impact of elevated Pco2 on marine organisms and habitats to anticipate the severity and consequences of future ocean chemistry change. Despite the importance of carry-over effects in the evolutionary history of marine organisms, few studies have considered links between life-history stages when determining how marine organisms will respond to elevated Pco2, and none have considered the link between adults and their offspring. Herein, we exposed adults of wild and selectively bred Sydney rock oysters, Saccostrea glomerata to elevated Pco2 during reproductive conditioning and measured the development, growth and survival response of their larvae. We found that elevated Pco2 had a negative impact on larvae of S. glomerata causing a reduction in growth, rate of development and survival. Exposing adults to elevated Pco2 during reproductive conditioning, however, had positive carry-over effects on larvae. Larvae spawned from adults exposed to elevated Pco2 were larger and developed faster, but displayed similar survival compared with larvae spawned from adults exposed to ambient Pco2. Furthermore, selectively bred larvae of S. glomerata were more resilient to elevated Pco2 than wild larvae. Measurement of the standard metabolic rate (SMR) of adult S. glomerata showed that at ambient Pco2, SMR is increased in selectively bred compared with wild oysters and is further increased during exposure to elevated Pco2. This study suggests that sensitive marine organisms may have the capacity to acclimate or adapt to elevated Pco2 over the next century and a change in energy turnover indicated by SMR may be a key process involved.
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    Divergent selection on locally adapted major histocompatibility complex immune genes experimentally proven in the field (2012)
    Wiley
    In:  Ecology Letters, 15 (7). pp. 723-731.
    Details
    Publication Date: 2017-02-23
    Description: Although crucial for the understanding of adaptive evolution, genetically resolved examples of local adaptation are rare. To maximize survival and reproduction in their local environment, hosts should resist their local parasites and pathogens. The major histocompatibility complex (MHC) with its key function in parasite resistance represents an ideal candidate to investigate parasite-mediated local adaptation. Using replicated field mesocosms, stocked with second-generation lab-bred three-spined stickleback hybrids of a lake and a river population, we show local adaptation of MHC genotypes to population-specific parasites, independently of the genetic background. Increased allele divergence of lake MHC genotypes allows lake fish to fight the broad range of lake parasites, whereas more specific river genotypes confer selective advantages against the less diverse river parasites. Hybrids with local MHC genotype gained more body weight and thus higher fitness than those with foreign MHC in either habitat, suggesting the evolutionary significance of locally adapted MHC genotypes.
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    Population genetic dynamics of three-spined sticklebacks (Gasterosteus aculeatus) in anthropogenic altered habitats (2012)
    Wiley
    In:  Ecology and Evolution, 2 (6). pp. 1122-1143.
    Details
    Publication Date: 2019-01-22
    Description: In industrialized and/or agriculturally used landscapes, inhabiting species are exposed to a variety of anthropogenic changes in their environments. Genetic diversity may be reduced if populations encounter founder events, bottlenecks, or isolation. Conversely, genetic diversity may increase if populations adapt to changes in selective regimes in newly created habitats. With the present study, genetic variability of 918 sticklebacks from 43 samplings (21.3 ± 3.8 per sample) at 36 locations from cultivated landscapes in Northwest Germany was analyzed at nine neutral microsatellite loci. To test if differentiation is influenced by habitat alterations, sticklebacks were collected from ancient running waters and adjacent artificial stagnant waters, from brooks with salt water inflow of anthropogenic and natural origin and adjacent freshwater sites. Overall population structure was dominated by isolation by distance (IBD), which was significant across all populations, and analysis of molecular variance (AMOVA) revealed that 10.6% of the variation was explained by river catchment area. Populations in anthropogenic modified habitats deviated from the general IBD structure and in the AMOVA, grouping by habitat type running/stagnant water explained 4.9% of variation and 1.4% of the variation was explained by salt-/freshwater habitat. Sticklebacks in salt-polluted water systems seem to exhibit elevated migratory activity between fresh- and saltwater habitats, reducing IBD. In other situations, populations showed distinct signs of genetic isolation, which in some locations was attributed to mechanical migration barriers, but in others to potential anthropogenic induced bottleneck or founder effects. The present study shows that anthropogenic habitat alterations may have diverse effects on the population genetic structure of inhabiting species. Depending on the type of habitat change, increased genetic differentiation, diversification, or isolation are possible consequences.
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    Ostracod palaeoecology and environmental change in the Laptev and Kara seas (Siberian Arctic) during the last 18 000 years (2012)
    Wiley
    In:  Boreas, 41 (4). pp. 557-577.
    Details
    Publication Date: 2017-01-24
    Description: Fossil ostracod assemblages were investigated in five AMS 14 C-dated cores from various water depths of the Laptev and Kara seas ranging from the upper continental slope (270?m) to the present-day shelf depth (40?m). Six fossil assemblages were distinguished. These represent the varying environmental conditions at the North Siberian continental margin since about 18?ka. In the cores from the shelf the ostracod assemblages reflect the gradual transition from an estuarine brackish-water environment to modern marine conditions since 12.3?ka, as induced by the regional early Holocene transgression. The core from the upper continental slope dates back to c. 17.6?ka and contains assemblages that are absent in the shelf cores. The assemblage older than 10?ka stands out as a specific community dominated by relatively deep-water Arctic and North Atlantic species that also contains euryhaline species. Such an assemblage provides evidence for past inflows of Atlantic-derived waters from as early as c. 17.2?ka, probably facilitated by upwelling in coastal polynyas, and a considerable riverine freshwater influence with enhanced surface water stratification owing to the proximity of the palaeocoastline until early Holocene times. In all studied cores, relative increases in euryhaline species dominant in the inner-shelf regions are recorded in the midlate Holocene sediments (〈7?ka), which otherwise already contain modern-like ostracod assemblages with relatively deep-water species. This observation suggests euryhaline species to be largely sea-ice- and/or iceberg-rafted and therefore may provide evidence for a climate cooling trend.
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  • 35
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    Spatial management of marine resources can enhance the recovery of predators and avoid local depletion of forage fish (2012)
    Wiley
    In:  Conservation Letters, 5 (6). pp. 486-492.
    Details
    Publication Date: 2019-01-21
    Description: The eastern Baltic cod stock has recently started to recover, after two decades of severe depletion, however with unexpected side effects. The stock has not re-occupied its former wide distribution range, but remains concentrated in a limited area in the southern Baltic Sea. The biomass of forage fish, i.e., sprat and herring, is historic low in this area, which in combination with increasing cod stock results in locally high predation mortality of forage fish and cannibalism of cod. In line with low prey availability, body weight and nutritional condition of cod drastically declined. In the southern Baltic Sea, cod competes with pelagic fisheries for the limited resources of sprat and herring, while the largest biomass of these species is currently found outside the distribution range of cod. Accounting for spatial overlap between species is crucial in developing ecosystem based fisheries management to enhance the recovery of predator stocks.
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  • 36
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    No stimulation of nitrogen fixation by non-filamentous diazotrophs under elevated CO2 in the South Pacific (2012)
    Wiley
    In:  Global Change Biology, 18 (10). pp. 3004-3014.
    Details
    Publication Date: 2019-09-23
    Description: Nitrogen fixation by diazotrophic cyanobacteria is a critical source of new nitrogen to the oligotrophic surface ocean. Research to date indicates that some diazotroph groups may increase nitrogen fixation under elevated pCO2. To test this in natural plankton communities, four manipulation experiments were carried out during two voyages in the South Pacific (30–35oS). High CO2 treatments, produced using 750 ppmv CO2 to adjust pH to 0.2 below ambient, and ‘Greenhouse’ treatments (0.2 below ambient pH and ambient temperature +3 °C), were compared with Controls in trace metal clean deckboard incubations in triplicate. No significant change was observed in nitrogen fixation in either the High CO2 or Greenhouse treatments over 5 day incubations. qPCR measurements and optical microscopy determined that the diazotroph community was dominated by Group A unicellular cyanobacteria (UCYN-A), which may account for the difference in response of nitrogen fixation under elevated CO2 to that reported previously for Trichodesmium. This may reflect physiological differences, in that the greater cell surface area:volume of UCYN-A and its lack of metabolic pathways involved in carbon fixation may confer no benefit under elevated CO2. However, multiple environmental controls may also be a factor, with the low dissolved iron concentrations in oligotrophic surface waters limiting the response to elevated CO2. If nitrogen fixation by UCYN-A is not stimulated by elevated pCO2, then future increases in CO2 and warming may alter the regional distribution and dominance of different diazotroph groups, with implications for dissolved iron availability and new nitrogen supply in oligotrophic regions.
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    New(t)s and view from hybridizing MHC genes: introgression rather than trans-species polymorphism may shape allelic repertoires (2012)
    Wiley
    In:  Molecular Ecology, 21 (4). pp. 779-781.
    Details
    Publication Date: 2019-07-09
    Description: One of the key features of major histocompatibility complex (MHC) genes is the frequent occurrence of trans-species polymorphism, that is the passage of allelic lineages from ancestral to descendant species (Klein 2007). Selectively maintained ancestral polymorphism may, however, be hard to distinguish from introgression of MHC alleles between hybridizing species (Fig1). In this issue of Molecular Ecology, Nadachowska-Brzyska (2012) present data that suggest that the latter can be observed in two closely related species of newts, Lissotriton vulgaris (Lv) and L.montandoni (Lm) from south-east Europe. Strikingly, allelic MHC variation displayed more structure between geographically separated populations of L.vulgaris than across species in the hybrid zone. This suggests that high MHC variation in L.montadoni may result from mainly unidirectional gene flow between species, while differentiation between northern and southern populations of L.vulgaris might reflect local adaptation.
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    Evaluation of intrinsic velocity-pressure trends from low-pressure P-wave velocity measurements in rocks containing microcracks (2011)
    Wiley
    In:  Geophysical Journal International, 185 (3). pp. 1312-1320.
    Details
    Publication Date: 2018-07-10
    Description: Dependent on the ‘intrinsic’ effects on the crystal lattice of the rock constituents and the diminishing ‘extrinsic’ effects of pores and microcracks, elastic wave velocity versus pressure trends in cracked rocks are characterized by non-linear velocity increase at low pressure. At high pressure the ‘extrinsic’ influence vanishes and the velocity increase becomes approximately linear. Usually, the transition between non-linear and linear behaviour, the ‘crack closure pressure’, is not accessible in an experiment, because actual equipment is limited to lower pressure. For this reason, several model functions for describing velocity—pressure trends were proposed in the literature to extrapolate low-pressure P-wave velocity measurements to high pressures and, in part, to evaluate the ‘intrinsic’ velocity—pressure trend from low-pressure data. Knowing the ‘intrinsic’ velocity trend is of particular importance for the quantification of the crack influence at low pressure, at high pressure, the ‘intrinsic’ trend describes the velocity trend as a whole sufficiently well. Checking frequently used model functions for suitability led to the conclusion that all relations are unsuitable for the extrapolation and, if applicable, the estimation of the ‘intrinsic’ velocity trend. However, it can be shown that the ‘intrinsic’ parameters determined by means of a suitable model function, the zero pressure velocity and the pressure gradient depend on maximum experimental pressure in a non-linear way. Our approach intends to obtain better estimates of particular parameters from observed non-linear behaviour. A converging exponential function is used to approximate particular trends, assuming that the point of convergence of the function represents a better estimate of the zero pressure velocity and the pressure gradient, respectively. Whether the refined ‘intrinsic’ velocity trend meets the ‘true intrinsic’ velocity trend within acceptable errors cannot be proven directly due to missing experimental data at very high pressure. We, therefore, conclude that our approach cannot ensure absolutely certain ‘intrinsic’ velocity trends, however, it can be shown that the optimized trends approximate the ‘true intrinsic’ velocity trend better as all the other relations do.
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  • 39
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    Bacterial sulfur cycling shapes microbial communities in surface sediments of an ultramafic hydrothermal vent field (2011)
    Wiley
    In:  Environmental Microbiology, 13 (10). pp. 2633-2648.
    Details
    Publication Date: 2018-09-12
    Description: The ultramafic-hosted Logatchev hydrothermal field (LHF) is characterized by vent fluids, which are enriched in dissolved hydrogen and methane compared with fluids from basalt-hosted systems. Thick sediment layers in LHF are partly covered by characteristic white mats. In this study, these sediments were investigated in order to determine biogeochemical processes and key organisms relevant for primary production. Temperature profiling at two mat-covered sites showed a conductive heating of the sediments. Elemental sulfur was detected in the overlying mat and metal-sulfides in the upper sediment layer. Micro-profiles revealed an intensive hydrogen sulfide flux from deeper sediment layers. Fluorescence in situ hybridization showed that filamentous and vibrioid, Arcobacter-related Epsilonproteobacteria dominated the overlying mats. This is in contrast to sulfidic sediments in basalt-hosted fields where mats of similar appearance are composed of large sulfur-oxidizing Gammaproteobacteria. Epsilonproteobacteria (7-21%) and Deltaproteobacteria (20-21%) were highly abundant in the surface sediment layer. The physiology of the closest cultivated relatives, revealed by comparative 16S rRNA sequence analysis, was characterized by the capability to metabolize sulfur components. High sulfate reduction rates as well as sulfide depleted in (34)S further confirmed the importance of the biogeochemical sulfur cycle. In contrast, methane was found to be of minor relevance for microbial life in mat-covered surface sediments. Our data indicate that in conductively heated surface sediments microbial sulfur cycling is the driving force for bacterial biomass production although ultramafichosted systems are characterized by fluids with high levels of dissolved methane and hydrogen
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  • 40
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    Seasonal changes in vertical distribution patterns of cod (Gadus morhua) in the Bornholm Basin, central Baltic Sea (2012)
    Wiley
    In:  Fisheries Oceanography, 21 (1). pp. 33-43.
    Details
    Publication Date: 2017-01-09
    Description: Hydroacoustic single fish detection and corresponding hydrographic measurements were used to study seasonal changes in vertical distribution of adult cod (Gadus morhua) in relation to ambient environmental conditions in the Bornholm Basin, central Baltic Sea. Sampling was conducted in April, June and August covering the years 2006–2009. Vertical distribution of individual fish was resolved from hydroacoustic single-target detection in combination with a fish-tracking algorithm and related to ambient hydrographic conditions. Based on a generalized linear effect model, both salinity and oxygen concentration were identified as key parameters affecting cod vertical distribution. Results also showed a clear seasonal effect with a more shallow distribution as the spawning season progressed and oxygen concentrations in the deep parts of the basin deteriorated. The upper limit of the distributional range was mostly constituted by the halocline and remained rather constant, whereas increasing oxygen depletion in the deep water layers lifted the lower boundary of the vertical distribution, leading to the observed upward shift in the overall distribution pattern. The results presented in this study highlight a significant shortcoming of the assessment survey design established for this species, as the observed shift in vertical distribution is not taken into account, thus introducing a potential bias into a data series used to tune the ICES standard stock assessment of this species.
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    Stoichiometric responses of phytoplankton species to the interactive effect of nutrient supply ratios and growth rates (2012)
    Wiley
    In:  Journal of Phycology, 48 . pp. 539-549.
    Details
    Publication Date: 2018-05-30
    Description: Three species of phytoplankton, Rhodomonas sp., Phaeodactylum tricornutum Bohlin, and Isochrysis galbana Parke, were cultivated in semicontinuous culture to analyze the response of carbon (C):nitrogen (N):phosphorus (P) stoichiometry to the interactive effect of five N:P supply ratios and four growth rates (dilution rates). The relationship between cellular N and P quotas and growth rates fits well to both the Droop and Ågren’s functions for all species. We observed excess uptake of both N and P in the three species. N:P biomass ratios showed a significant positive relationship with N:P supply ratios across the entire range of growth rates, and N:P biomass ratios converged to an intermediate value independent of N:P supply ratios at higher growth rates. The effect of growth rates on N:P biomass ratios was positive at lower N:P supply ratios, but negative at higher N:P supply ratios for both Rhodomonas sp. and I. galbana, while for P. tricornutum this effect was negative at all N:P supply ratios. A significant interactive effect of N:P supply ratios and growth rates on N:P biomass ratios was found in both Rhodomonas sp. and P. tricornutum, but not in I. galbana. Our results suggest that Ågren’s functions may explain the underlying biochemical principle for the Droop model. The parameters in the Droop and Ågren’s functions can be useful indications of algal succession in the phytoplankton community in changing oceans.
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    Growth, length-weight relationship and biological information on the clearhead icefish (Protosalanx hyalocranius Abbott, 1901) in Lake Khanka (Xingkai) (2012)
    Wiley
    In:  Journal of Applied Ichthyology, 28 (5). pp. 842-844.
    Details
    Publication Date: 2017-07-03
    Description: This paper reports the growth pattern and length-weight relationship and summarizes biological data for the clearhead icefish (Protosalanx hyalocranius) in Lake Khanka (Xingkai), on the border between China and Russia. The von Bertalanffy growth was estimated as SL = 20.3(1 − e−2.93 (t − 0.21)). The length-weight relationship was W = 0.00448 SL2.99 for juveniles, and W = 0.000896 SL3.59 for adults. P. hyalocranius mature in December and spawn in January, when the lake is still covered with ice, then die after spawning. The larvae hatch in March. Juveniles feed mainly on zooplankton whereas adults also feed on other fishes.
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  • 43
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    Joint inversion of navigation and resistivity using a fixed transmitter and a towed receiver array: a transient marine CSEM model study (2011)
    Wiley
    In:  Geophysical Journal International, 186 . pp. 987-996.
    Details
    Publication Date: 2018-07-10
    Description: A typical marine controlled-source electromagnetic system consists of an electric dipole transmitter and one or more electric dipole receivers. The objective of a survey is to determine the seafloor resistivity by recording the electromagnetic transients, which diffuse through the earth from the transmitter to the receivers. Accurate knowledge of system geometry is crucial for proper interpretation; errors in the position and orientation of the transmitter and/or the receivers propagate into errors in the predicted seafloor resistivity. We show theoretically that for certain multireceiver set-ups and crustal electrical profiles that the geometry and the seafloor resistivity may be determined independently. A specific example is an experiment proposed in association with NEPTUNE Canada. Here, we have already deployed an electric dipole transmitter with a known orientation in a known location. A cabled streamer of receivers may be towed by a survey vessel in the vicinity of the transmitter on a known heading. For this configuration, an eigenparameter analysis of two seafloor models consisting of (1) a halfspace and (2) a resistive layer buried within a halfspace shows that the resistivity structure of the seafloor can be independently resolved from the cable location. Further studies of these two models also indicate that the position of the streamer must be roughly known in advance on the order of a hundred metres to be used as a suitable starting model in a non-linear inversion. The crucial information is contained in the parts of the pulse which travel through the seawater and which act as a calibration path. Such information is absent for a static DC method.
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  • 44
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    Cellular pH measurements in Emiliania huxleyi reveal pronounced membrane proton permeability (2011)
    Wiley
    In:  New Phytologist, 190 (3). pp. 595-608.
    Details
    Publication Date: 2019-09-23
    Description: To understand the influence of changing surface ocean pH and carbonate chemistry on the coccolithophore Emiliania huxleyi, it is necessary to characterize mechanisms involved in pH homeostasis and ion transport. Here, we measured effects of changes in seawater carbonate chemistry on the fluorescence emission ratio of BCECF (2',7'-bis-(2-carboxyethyl)-5-(and-6)-carboxyfluorescein) as a measure of intracellular pH (pH(i)). Out of equilibrium solutions were used to differentiate between membrane permeation pathways for H+, CO(2) and HCO(3)-. Changes in fluorescence ratio were calibrated in single cells, resulting in a ratio change of 0.78 per pH(i) unit. pH(i) acutely followed the pH of seawater (pH(e)) in a linear fashion between pH(e) values of 6.5 and 9 with a slope of 0.44 per pH(e) unit. pH(i) was nearly insensitive to changes in seawater CO(2) at constant pH(e) and HCO(3)-. An increase in extracellular HCO(3)- resulted in a slight intracellular acidification. In the presence of DIDS (4,4'-diisothiocyanatostilbene-2,2'-disulfonic acid), a broad-spectrum inhibitor of anion exchangers, E. huxleyi acidified irreversibly. DIDS slightly reduced the effect of pH(e) on pH(i). The data for the first time show the occurrence of a proton permeation pathway in E. huxleyi plasma membrane. pH(i) homeostasis involves a DIDS-sensitive mechanism.
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    Using empirical mode decomposition to process marine MT data (2012)
    Wiley
    In:  Geophysical Journal International, 190 . pp. 293-309.
    Details
    Publication Date: 2019-09-23
    Description: Magnetotellurics (MT) uses a frequency-dependent impedance tensor estimated from the spectra of associated time-varying horizontal electric and magnetic fields measured at the Earth's surface to image the sub-surface of the Earth. Most current methods use Fourier transform based procedures to estimate power spectral densities and, therefore, assume that the signals are stationary over the record length. Stationarity in geomagnetic data, however, is not always ensured given the variety of source mechanism causing the geomagnetic variations at different time and spatial scales. Additional complication and bias may arise from the presence of noise in the recorded electric and magnetic file data. Sophisticated MT data processing account for a potential bias through windowing of the time series as well as robust estimates of the impedance. We explore a new heuristic method for dealing with the non-stationarity of MT time series based on empirical mode decomposition. It is a dynamic time series analysis method, in which complicated data sets can be decomposed into a finite and small number of simple intrinsic mode functions. In this paper, we use the empirical mode decomposition method to decompose MT data into intrinsic mode functions and calculate the instantaneous frequencies and spectra to determine the impedance tensor. We investigate the reliability of the impedance estimates on synthetic data by comparing the results to those obtained by analytical methods. Finally, we apply our processing scheme to data measured from the Costa Rica subduction zone, and compare the results from our new method to the frequently-used BIRRP processing method.
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  • 46
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    Mantle wedge hydration in Nicaragua from Local Earthquake Tomography (2011)
    Wiley
    In:  Geophysical Journal International, 186 (1). pp. 92-112.
    Details
    Publication Date: 2019-09-23
    Description: The continental margin of Nicaragua and Costa Rica is characterized by significant lateral changes from north to south such as a decreasing dip of the slab, a decreasing magma production and a shift in the volcanic front. To investigate this transition, a joint on- and offshore local earthquake tomography was performed. Low P-wave velocities and high Vp/Vs ratios, indicative for hydration, were found in the upper-mantle and lowermost crust beneath the Sandino Basin. The mantle wedge hydration can be estimated to 2.5 wt. per cent beneath south Nicaragua. In contrast, the mantle wedge beneath north Costa Rica is weakly or not hydrated. The hydration leads to a local gap in the seismicity in Nicaragua. The lateral transition between the hydrated and non-hydrated areas occurs within a distance of about 10 km. This transition coincides with a change in the crustal thickness in the order of 5–10 km, thickening to the south, and in the tectonic regimes. The change in the tectonic regimes towards a stronger extension along the margin of Nicaragua could be the key for understanding the observations: the extension may support the opening of pathways for a wide zone of fluid migration and hydration through the overriding plate which are identified with areas of low Vp, high Vp/Vs and low seismicity.
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    Challenges and opportunities of metabolomics (2012)
    Wiley
    In:  Journal of Cellular Physiology, 227 (8). pp. 2975-2981.
    Details
    Publication Date: 2020-07-27
    Description: The metabolome is a data-rich source of information concerning all the low-molecular-weight metabolites in a biofluid, which can indicate early biological changes to the host due to perturbations in metabolic pathways. Major changes can be seen after minor stimuli, which make it a valuable target for analysis. Due to the diverse and sensitive nature of the metabolome, studies must be designed in a manner to maintain consistency, reduce variation between subjects, and optimize information recovery. Technological advancements in experimental design, mouse models and instrumentation have aided in this effort. Metabolomics has the ultimate potential to be valuable in a clinical setting where it could be used for early diagnosis of a disease and as a predictor of treatment response and survival. During drug treatment, the metabolic status of an individual could be monitored and used to indicate possible toxic effects. Metabolomics therefore has great potential for improving diagnosis, treatment and aftercare of disease.
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    Comparison of Alternate Reactants for pM Level Cobalt Analysis in Seawater by the Use of Catalytic Voltammetry (2011)
    Wiley
    In:  Electroanalysis, 23 (7). pp. 1663-1670.
    Details
    Publication Date: 2018-07-25
    Description: The analysis of Cobalt (Co) at low pM concentrations in seawater with Adsorptive Cathodic Stripping Voltammetry involves high concentrations of sodium nitrite (NaNO2) to enhance the signal in an electrocatalytic reaction. In this study we found three substitutes for NaNO2 that critically affected the sensitivity. Optimisation of a method with potassium bromate (KBrO3) resulted in an excellent detection limit (0.9 pM) after a 90 s adsorption period. Reactant concentration and consumption were 10× reduced compared to protocols with NaNO2 and reagent blanks were lower. Accuracy and precision were verified with SAFe intercalibration standards and the method was applied using open ocean seawater samples. The reaction mechanism is discussed and differences to NaNO2 are shown.
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  • 49
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    Latitudinal and voltinism compensation shape thermal reaction norms for growth rate (2011)
    Wiley
    In:  Molecular Ecology, 20 (14). pp. 2929-2941.
    Details
    Publication Date: 2019-07-08
    Description: Latitudinal variation in thermal reaction norms of key fitness traits may inform about the response of populations to climate warming, yet their adaptive nature and evolutionary potential are poorly known. We assessed the contribution of quantitative genetic, neutral genetic and environmental effects to thermal reaction norms of growth rate for populations of the damselfly Ischnura elegans. Among populations, reaction norms differed primarily in elevation, suggesting that time constraints associated with shorter growth seasons in univoltine, high-latitude as well as multivoltine, low-latitude populations selected for faster growth rates. Phenotypic divergence among populations is consistent with selection rather than drift as QST was greater than FST in all cases. QST estimates increased with experimental temperature and were influenced by genotype by environment interactions. Substantial additive genetic variation for growth rate in all populations suggests that evolution of trait means in different environments is not constrained. Heritability of growth rates was higher at high temperature, driven by increased genetic rather than environmental variance. While environment-specific nonadditive effects also may contribute to heritability differences among temperatures, maternal effects did not play a significant role (where these could be accounted for). Genotype by environment interactions strongly influenced the adaptive potential of populations, and our results suggest the potential for microevolution of thermal reaction norms in each of the studied populations. In summary, the observed latitudinal pattern in growth rates is adaptive and results from a combination of latitudinal and voltinism compensation. Combined with the evolutionary potential of thermal reaction norms, this may affect populations’ ability to respond to future climate warming.
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    Expression of biomineralization-related ion transport genes in Emiliania huxleyi (2011)
    Wiley
    In:  Environmental Microbiology, 13 (12). pp. 3250-3265.
    Details
    Publication Date: 2018-09-12
    Description: Biomineralization in the marine phytoplankton Emiliania huxleyi is a stringently controlled intracellular process. The molecular basis of coccolith production is still relatively unknown although its importance in global biogeochemical cycles and varying sensitivity to increased pCO2 levels has been well documented. This study looks into the role of several candidate Ca2+, H+ and inorganic carbon transport genes in E. huxleyi, using quantitative reverse transcriptase PCR. Differential gene expression analysis was investigated in two isogenic pairs of calcifying and non-calcifying strains of E. huxleyi and cultures grown at various Ca2+ concentrations to alter calcite production. We show that calcification correlated to the consistent upregulation of a putative HCO3- transporter belonging to the solute carrier 4 (SLC4) family, a Ca2+/H+ exchanger belonging to the CAX family of exchangers and a vacuolar H+-ATPase. We also show that the coccolith-associated protein, GPA is downregulated in calcifying cells. The data provide strong evidence that these genes play key roles in E. huxleyi biomineralization. Based on the gene expression data and the current literature a working model for biomineralization-related ion transport in coccolithophores is presented.
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    Source-to-sink relationships along the South-Central Chilean margin: evidence from detrital apatite fission-track analysis (2011)
    Wiley
    In:  Basin Research, 23 (5). pp. 551-570.
    Details
    Publication Date: 2019-01-21
    Description: Detrital fission-track studies on sedimentary basins surrounding eroding mountain belts provide a powerful tool to reconstruct exhumation histories of the source area. However, examples from active arc-trench systems are sparse. In this study, we report detrital apatite fission-track (AFT) data from Holocene and Pleistocene turbiditic trench and modern river sediments at the Chilean margin (36°S-47°S). Sediment petrography and detrital AFT data point to different major sediment sources, underlining the need for multidisciplinary studies: whereas sediment petrography indicates the erosion of large volumes of volcanic detritus, no such volcanic signal is seen in the detrital age pattern. Areally subordinate plutonic units are identified as the main, often unique sources. This result has important implications for studies of fossil systems, where the feeder areas are eroded, and where the youngest age population is often interpreted to indicate active volcanism. For the southernmost part of the study area in the Patagonian Andes, where the source area is mainly composed of granitoids, the sediment is derived from only small portions along the main divide, pointing to focused glacial erosion there. Our detrital AFT data show no exhumational signal that could be related to the subduction of the actively spreading Chile Ridge at c. 47°S and to the opening of a slab window beneath the South American Plate.
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    Hosts are ahead in a marine host-parasite coevolutionary arms race: innate immune system adaptation in pipefish Syngnathus typhle against Vibrio phylotypes (2012)
    Wiley
    In:  Evolution, 66 (8). pp. 2528-2539.
    Details
    Publication Date: 2017-01-04
    Description: Microparasites have a higher evolutionary potential than their hosts due to an increased mutation rate and a shorter generation time that usually results in parasites being locally adapted to their sympatric hosts. This pattern may not apply to generalist pathogens as adaptation to sympatric host genotypes is disadvantageous due to a narrowing of the host range, in particular under strong gene flow among host populations. Under this scenario, we predict that the immune defense of hosts reveals adaptation to locally common pathogen phylotypes. This was tested in four host populations of the pipefish Syngnathus typhle and associated bacteria of the genus Vibrio. We investigated the population divergence among host and bacteria populations and verified that gene flow is higher among host populations than among parasite populations. Next, we experimentally assessed the strength of innate immune defense of pipefish hosts using in vitro assays that measured antimicrobial activity of blood plasma against sympatric and allopatric Vibrio phylotypes. Pipefish plasma displays stronger antimicrobial activity against sympatric Vibrio phylotypes compared to allopatric ones. This suggests that host defense is genetically adapted against local bacteria with a broad and unspecialized host spectrum, a situation that is typical for marine systems with weak host population structure.
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  • 53
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    Antiprotozoal Activity of Melampyrum arvense and its Metabolites (2011)
    Wiley
    In:  Phytotherapy Research, 25 (1). pp. 142-146.
    Details
    Publication Date: 2014-10-02
    Description: An activity guided isolation of the H2O subextract of the crude extract of Melampyrum arvense L. afforded iridoid glucosides: aucubin (1), melampyroside (2), mussaenoside (3), mussaenosidic acid (4), 8-epi-loganin (5); flavonoids: apigenin (6), luteolin (7), luteolin 7-O-β-glucopyranoside (8); a lignan glycoside dehydrodiconiferyl alcohol 9-O-β-glucopyranoside (9); and benzoic acid (10). β-Sitosterol (11) and a fatty acid mixture (12) were identified as the active principles of the CHCl3 subextract. The structures of the isolates were elucidated by spectroscopic methods, while the composition of 12 was identified by GC-MS after methylation. Luteolin (7) appeared as the most active compound against Trypanosoma brucei rhodesiense and Leishmania donovani (IC50 values 3.8 and 3.0 μg/mL). Luteolin 7-O-β-glucopyranoside (8) displayed the best antiplasmodial activity against Plasmodium falciparum (IC50 value 2.9 μg/mL). This is the first detailed phytochemical study on Turkish M. arvense and the first report of the antiprotozoal effect of Melampyrum species and its constituents
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    Evaluation of Turkish Seaweeds for Antiprotozoal, Antimycobacterial and Cytotoxic Activities (2011)
    Wiley
    In:  Phytotherapy Research, 25 (5). pp. 778-783.
    Details
    Publication Date: 2014-10-02
    Description: As part of our continuing research on seaweeds, crude MeOH extracts of two green, three brown and six red algae collected from Marmara, Black, Aegean and Mediterranean Seas were screened. Four parasitic protozoa, i.e. Plasmodium falciparum, Trypanosoma brucei rhodesiense, T. cruzi, Leishmania donovani and the tubercle bacillus Mycobacterium tuberculosis were used as test organisms for the in vitro assays. The selective toxicity of the extracts was also determined against mammalian L6 cells. All seaweed extracts were active against T. brucei rhodesiense; the Dasya pedicellata extract was the most potent (IC50 value 0.37 µg/mL). The same extract also weakly inhibited the growth of T. cruzi (IC50 62.02 µg/mL). All seaweed extracts also showed leishmanicidal activity (IC50 values 16.76–69.98 µg/mL). The majority of the extracts also exhibited antiplasmodial potential and the most potent extracts were those from D. pedicellata (IC50 0.38 µg/mL), Codium bursa (IC50 1.38 µg/mL) and Caulerpa rasemosa (IC50 3.12 µg/mL). One brown and two red algal extracts showed some weak activity against Mycobacterium tuberculosis (MIC values 125–256 µg/mL). Except for the extract of Dasya pedicellata, none of the extracts displayed any cytotoxicity. This is the second study investigating the antiprotozoal activities of Turkish marine algae and identifies Dasya pedicellata, an understudied algal species, as a candidate for further studies.
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    A novel primer set for multilocus phylogenetic inference in East African cichlid fishes (2012)
    Wiley
    In:  Molecular Ecology Resources, 12 (6). pp. 1097-1104.
    Details
    Publication Date: 2018-11-09
    Description: The cichlid fishes in the East African Great Lakes are a prime model system for the study of adaptive radiation. Therefore, the availability of an elaborate phylogenetic framework is an important prerequisite. Previous phylogenetic hypotheses on East African cichlids are mainly based on mitochondrial and/or fragment-based markers, and, to date, no taxon-rich phylogeny exists that is based on multilocus DNA sequence data. Here, we present the design of an extensive new primer set (24 nuclear makers) for East African cichlids that will be used for multilocus phylogenetic analyses in the future. The primers are designed to work for both Sanger sequencing and next-generation sequencing with the 454 technology. As a proof of principle, we validate these primers in a phylogenetically representative set of 16 cichlid species from Lake Tanganyika and main river systems in the area and provide a basic evaluation of the markers with respect to marker length and diversity indices
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    Assessing invasion risk across taxa and habitats: life stage as a determinant of invasion success (2011)
    Wiley
    In:  Diversity and Distributions, 17 (4). pp. 593-602.
    Details
    Publication Date: 2014-08-08
    Description: Aim  Many aquatic invertebrates produce dormant life-history stages as a means to endure inhospitable environments and to facilitate natural long-distance dispersal, yet we have little understanding of the role of dormant stages as a mechanism for human-mediated introductions of non-indigenous species. We explore the survival of invertebrate dormant eggs in collected ships’ ballast sediment over a 1-year period to determine relative invasion potential across taxa (i.e. rotifers, copepods, cladocerans and bryozoans) and different habitats (freshwater, marine). Location  Canadian Atlantic and Pacific coasts and Laurentian Great Lakes. Methods  During 2007 and 2008, 19 ballast samples were collected as a part of a larger study. The degradation rate of dormant eggs was assessed by enumerating dormant eggs and by conducting viability hatching experiments. Results  Taxa examined included rotifers, copepods, anomopods, onychopods and bryozoans. Dormant eggs of rotifers degraded at the highest rate of all taxa examined, with no viable eggs remaining within 10 months. Copepods showed a less rapid degradation rate than rotifers. The degradation rate of anomopod dormant eggs was significantly slower than that of both rotifers and copepods. Onychopods and bryozoans did not visibly degrade at all over 12 months. Viability hatching experiments were successful for rotifers, copepods, and anomopods. Onychopods and bryozoans did not hatch during any of the three hatching trials. Main conclusions  Dormancy is not equally beneficial to all invertebrate taxa. Our results indicate that dormant eggs of rotifers and copepods degrade at a rapid rate and may not pose high invasion risk. In contrast, the slow degradation rate of anomopod dormant eggs and the lack of degradation of onychopod and bryozoan dormant eggs could result in high invasion risk because of their accumulation in ballast tanks. Species having resistant dormant eggs mostly belong to freshwater taxa making freshwater habitats at higher invasion risk by dormant invertebrates than marine habitats.
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    Role of domestic shipping in the introduction or secondary spread of nonindigenous species: biological invasions within the Laurentian Great Lakes (2012)
    Wiley
    In:  Journal of Applied Ecology, 49 (5). pp. 1124-1130.
    Details
    Publication Date: 2014-08-08
    Description: The most effective way to manage invasive species is to prevent their introduction via vector regulation. While progress has been made in the management of transoceanic ballast water, domestic vessels operating within smaller geographic regions such as the Laurentian Great Lakes, Mediterranean Sea, North Sea or Baltic Sea are often exempt from regulations. We randomly surveyed unmanaged ballast water moved by domestic vessels within the Laurentian Great Lakes and compared the results with that of exchanged ballast water from transoceanic vessels to assess invasion risk of zooplankton transported by these two types of vessels. Total abundance and species richness were significantly different between the two vessel types with mean abundance being two magnitudes greater, and species richness being threefold higher in domestic vessels compared with transoceanic vessels. Abundance of restricted taxa – cumulatively the Great Lakes' indigenous and nonindigenous species (NIS) which do not occur in all five lakes – was also significantly higher in domestic vessels (mean densities were 24 170 and 3421 individuals per m3 for domestic and transoceanic vessels, respectively), whereas the abundance of NIS did not differ between vessels (median densities of 2015 and 850 individuals per m3, respectively). We documented 89 species transported by domestic vessels of which 31 had restricted distribution and eight were NIS. While most NIS were already established in all five lakes, Cercopagis pengoi, a NIS of global concern, and Nitokra hibernica have not been identified from Lake Superior, and both were sampled from ballast water destined for discharge in Lake Superior. Beside the risk of spread of NIS between lakes, domestic shipping can act as a vector for homogenization of indigenous taxa, with at least 21 native species (99 events) being moved outside their historical distribution. Synthesis and applications. Our study indicates that management of invasive species should consider ecological, not geographical or political boundaries. Domestic vessels operating within a limited geographic region have high potential to introduce or spread species with restricted distribution, demonstrating importance of intraregional ballast water management. Results presented here should interest policy makers and environmental managers who seek to reduce invasion risk.
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    Emerging fields in functional metagenomics and its industrial relevance - overcoming limitations and redirecting the search for novel biocatalysts (2011)
    Wiley
    In:  In: Handbook of Molecular Microbial Ecology II: Metagenomics in Different. , ed. by de Bruijn, F. J. Wiley, Hoboken, , pp. 483-498.
    Details
    Publication Date: 2019-01-17
    Type: Book chapter , NonPeerReviewed
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    Phosphate transporters in marine phytoplankton and their viruses: Cross-domain commonalities in viral-host gene exchanges (2012)
    Wiley
    In:  Environmental Microbiology, 14 (1). pp. 162-176.
    Details
    Publication Date: 2019-03-05
    Description: Phosphate (PO 4) is an important limiting nutrient in marine environments. Marine cyanobacteria scavenge PO 4 using the high-affinity periplasmic phosphate binding protein PstS. The pstS gene has recently been identified in genomes of cyanobacterial viruses as well. Here, we analyse genes encoding transporters in genomes from viruses that infect eukaryotic phytoplankton. We identified inorganic PO 4 transporter-encoding genes from the PHO4 superfamily in several virus genomes, along with other transporter-encoding genes. Homologues of the viral pho4 genes were also identified in genome sequences from the genera that these viruses infect. Genome sequences were available from host genera of all the phytoplankton viruses analysed except the host genus Bathycoccus. Pho4 was recovered from Bathycoccus by sequencing a targeted metagenome from an uncultured Atlantic Ocean population. Phylogenetic reconstruction showed that pho4 genes from pelagophytes, haptophytes and infecting viruses were more closely related to homologues in prasinophytes than to those in what, at the species level, are considered to be closer relatives (e.g. diatoms). We also identified PHO4 superfamily members in ocean metagenomes, including new metagenomes from the Pacific Ocean. The environmental sequences grouped with pelagophytes, haptophytes, prasinophytes and viruses as well as bacteria. The analyses suggest that multiple independent pho4 gene transfer events have occurred between marine viruses and both eukaryotic and bacterial hosts. Additionally, pho4 genes were identified in available genomes from viruses that infect marine eukaryotes but not those that infect terrestrial hosts. Commonalities in marine host-virus gene exchanges indicate that manipulation of host-PO 4 uptake is an important adaptation for viral proliferation in marine systems. Our findings suggest that PO 4-availability may not serve as a simple bottom-up control of marine phytoplankton. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.
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    The non-hierarchical, non-uniformly branching topology of a leuconoid sponge aquiferous system revealed by 3D reconstruction and morphometrics using corrosion casting and X-ray microtomography (2011)
    Wiley
    In:  Acta Zoologica, 93 (2). pp. 160-170.
    Details
    Publication Date: 2018-12-07
    Description: As sessile filter feeders, sponges rely on a highly efficient fluid transport system. Their physiology depends on efficient water exchange, which is performed by the aquiferous system. This prominent poriferan anatomical character represents a dense network of incurrent and excurrent canals on which we lack detailed 3D models. To overcome this, we investigated the complex leucon‐type architecture in the demosponge Tethya wilhelma using corrosion casting, microtomography, and 3D reconstructions. Our integrative qualitative and quantitative approach allowed us to create, for the first time, high‐resolution 3D representations of entire canal systems which were used for detailed geometric and morphometric measurements. Canal diameters lack distinct size classes, and bifurcations are non‐uniformly ramified. A relatively high number of bifurcations show previously unknown and atypical cross‐sectional area ratios. Scaling properties and topological patterns of the canals indicate a more complex overall architecture than previously assumed. As a consequence, it might be more convenient to group canals into functional units rather than hierarchical clusters. Our data qualify the leucon canal system architecture of T. wilhelma as a highly efficient fluid transport system adapted toward minimal flow resistance. Our results and approach are relevant for a better understanding of sponge biology and cultivation techniques.
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    The role of statisticians in international science policy (2011)
    Wiley
    In:  Environmetrics, 22 (7). pp. 817-825.
    Details
    Publication Date: 2018-12-14
    Description: There are precious few statisticians involved in science policy, either nationally or internationally. In this paper I will, in an unusually personal way for a scientific journal, describe some of the possibilities for policy work and the potential impact such work can have. An example is the Intergovernmental Panel on Climate Change. I will also discuss ways that organizations, individuals, and the statistical community as a whole can get involved in policy aspects of research. And policy research is unavoidably political!
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    Cephalopod origin and evolution: A congruent picture emerging from fossils, development and molecules: Extant cephalopods are younger than previously realised and were under major selection to become agile, shell-less predators (2011)
    Wiley
    In:  Bioessays, 33 (8). pp. 602-613.
    Details
    Publication Date: 2021-08-26
    Description: Cephalopods are extraordinary molluscs equipped with vertebrate-like intelligence and a unique buoyancy system for locomotion. A growing body of evidence from the fossil record, embryology and Bayesian molecular divergence estimations provides a comprehensive picture of their origins and evolution. Cephalopods evolved during the Cambrian (∼530 Ma) from a monoplacophoran-like mollusc in which the conical, external shell was modified into a chambered buoyancy apparatus. During the mid-Palaeozoic (∼416 Ma) cephalopods diverged into nautiloids and the presently dominant coleoids. Coleoids (i.e. squids, cuttlefish and octopods) internalised their shells and, in the late Palaeozoic (∼276 Ma), diverged into Vampyropoda and the Decabrachia. This shell internalisation appears to be a unique evolutionary event. In contrast, the loss of a mineralised shell has occurred several times in distinct coleoid lineages. The general tendency of shell reduction reflects a trend towards active modes of life and much more complex behaviour.
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    Current Status and Bottle Neck of Octopod Aquaculture: The Case of American Species (2011)
    Wiley
    In:  Journal of the World Aquaculture Society, 42 (6). pp. 735-752.
    Details
    Publication Date: 2021-08-19
    Description: The increasing market demand for cephalopods and the experiences obtained with different species has boosted the interest in developing their culture in Latin America. In 2008, an international workshop was held in Puerto Montt, Chile, with 14 experts in experimental cephalopods aquaculture from Brazil, Chile, Spain, and Mexico. Several topics were approached within the holobenthic species Octopus maya and the merobenthic species Enteroctopus megalocyathus, Octopus vulgaris, and Robsonella fontaniana. Part of the conclusions demonstrated that the two greatest difficulties for their production were survival of paralarvae for merobenthic species, and survival of early juveniles for holobenthic species. Besides, there is a need to study the endogenous and exogenous factors affecting health and nutritional status of embryos, paralarvae, and juveniles. These stages, which may limit the culture, should be extensively studied in order to develop the appropriate environmental conditions and culture systems for the physiological and behavioral requirements, from egg incubation up to juveniles to reach a grow-out phase.
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    Raman spectroscopy for polymer characterization in an industrial environment (2011)
    Wiley
    In:  Macromolecular Symposia, 141 (1). pp. 103-116.
    Details
    Publication Date: 2018-07-09
    Description: In this paper we discuss the use of Raman spectroscopy for characterising polymers both in the laboratory and also in‐situ at the production line. We show how polymer crystallinity can be followed during extrusion and drawing, and describe the compositional analysis of cross‐linked acrylic terpolymers in a polymerisation reactor. We also discuss problems which can arise such as sample fluorescence from moving polymers, distortion of relative band intensities due to chromatic aberration, and sampling difficulties with turbid solutions.
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    Vacuolar respiration of nitrate coupled to energy conservation in filamentous Beggiatoaceae (2012)
    Wiley
    In:  Environmental Microbiology, 14 (11). pp. 2911-2919.
    Details
    Publication Date: 2016-12-12
    Description: We show that the nitrate storing vacuole of the sulfide-oxidizing bacterium Candidatus Allobeggiatoa halophila has an electron transport chain (ETC), which generates a proton motive force (PMF) used for cellular energy conservation. Immunostaining by antibodies showed that cytochrome c oxidase, an ETC protein and a vacuolar ATPase are present in the vacuolar membrane and cytochrome c in the vacuolar lumen. The effect of different inhibitors on the vacuolar pH was studied by pH imaging. Inhibition of vacuolar ATPases and pyrophosphatases resulted in a pH decrease in the vacuole, showing that the proton gradient over the vacuolar membrane is used for ATP and pyrophosphate generation. Blockage of the ETC decreased the vacuolar PMF, indicating that the proton gradient is build up by an ETC. Furthermore, addition of nitrate resulted in an increase of the vacuolar PMF. Inhibition of nitrate reduction, led to a decreased PMF. Nitric oxide was detected in vacuoles of cells exposed to nitrate showing that nitrite, the product of nitrate reduction, is reduced inside the vacuole. These findings show consistently that nitrate respiration contributes to the high proton concentration within the vacuole and the PMF over the vacuolar membrane is actively used for energy conservation.
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    Applying stable isotopes to examine food-web structure: an overview of analytical tools (2011)
    Wiley
    In:  Biological Reviews, 87 (3). pp. 545-562.
    Details
    Publication Date: 2018-07-20
    Description: Stable isotope analysis has emerged as one of the primary means for examining the structure and dynamics of food webs, and numerous analytical approaches are now commonly used in the field. Techniques range from simple, qualitative inferences based on the isotopic niche, to Bayesian mixing models that can be used to characterize food‐web structure at multiple hierarchical levels. We provide a comprehensive review of these techniques, and thus a single reference source to help identify the most useful approaches to apply to a given data set. We structure the review around four general questions: (1) what is the trophic position of an organism in a food web?; (2) which resource pools support consumers?; (3) what additional information does relative position of consumers in isotopic space reveal about food‐web structure?; and (4) what is the degree of trophic variability at the intrapopulation level? For each general question, we detail different approaches that have been applied, discussing the strengths and weaknesses of each. We conclude with a set of suggestions that transcend individual analytical approaches, and provide guidance for future applications in the field.
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    Finding a realistic velocity distribution based on iterating forward modelling and tomographic inversion (2011)
    Wiley
    In:  Geophysical Journal International, 186 (1). pp. 349-358.
    Details
    Publication Date: 2018-07-10
    Description: Tomography is like a photograph that was taken by a camera with blurred and defective lenses that deform the shapes and colours of objects. Reporting quantitative parameters derived from tomographic inversion is not always adequate because tomographic results are often strongly biased. To quantify the results of tomographic inversion, we propose a forward modelling and tomographic inversion (FM&TI) approach that aims to find a more realistic solution than conventional tomographic inversion. The FM&TI scheme is based on the assumption that if two tomograms derived from the inversion of observed and synthetic data are identical, the synthetic structure may appear to be closer to the real unknown structure in the ground than the inversion result. However, the manual design of the synthetic velocity distribution is usually time-consuming and ambiguous. In this study, we propose an approach that automatically searches for a probabilistic model. In this approach, a synthetic model is iteratively updated while taking into account the bias of the model in previous stages of the FM&TI performance. Here, we present an example of synthetic modelling and real data processing for an active source refraction data set corresponding to a marine profile across the subduction zone in Chile at about 32°S latitude. A key feature of the model is a low-velocity channel above the subducted oceanic crust, which was defined in the synthetic model and expected in the real case. The conventional first arrival traveltime tomography was barely able to resolve this channel. However, after several iterations of the FM&TI modelling, we succeeded in reconstructing this channel clearly. In the paper, we briefly discuss the nature of this low-velocity subduction channel, and we compare the results with other studies.
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    Bateman's principle and immunity in a sex-role reversed pipefish (2011)
    Wiley
    In:  Journal of Evolutionary Biology, 24 (7). pp. 1410-1420.
    Details
    Publication Date: 2017-07-10
    Description: In diverse animal species, from insects to mammals, females display a more efficient immune defence than males. Bateman’s principle posits that males maximize their fitness by increasing mating frequency whereas females gain fitness benefits by maximizing their lifespan. As a longer lifespan requires a more efficient immune system, these implications of Bateman’s principle may explain widespread immune dimorphism among animals. Because in most extant animals, the provisioning of eggs and a higher parental investment are attributes of the female sex, sex-role reversed species provide a unique opportunity to assess whether or not immune dimorphism depends on life history and not on sex per se. In the broad-nosed pipefish Syngnathus typhle, males brood and nourish the eggs in a ventral pouch and thus invest more into reproduction than females. We found males to have a more active immune response both in field data from four populations and also in an experiment under controlled laboratory conditions. This applied to different measures of immunocompetence using innate as well as adaptive immune system traits. We further determined the specificity of immune response initiation after a fully factorial primary and secondary exposure to a common marine pathogen Vibrio spp. Males not only had a more active but also a more specific immune defence than females. Our results thus indeed suggest that the sex that invests more into the offspring has the stronger immune defence.
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    Experimental coevolution leads to a decrease in parasite-induced host mortality (2011)
    Wiley
    In:  Journal of Evolutionary Biology, 24 (8). pp. 1777-1782.
    Details
    Publication Date: 2017-07-10
    Description: Host–parasite coevolution can lead to a variety of outcomes, but whereas experimental studies on clonal populations have taken prominence over the last years, experimental studies on obligately out-crossing organisms are virtually absent so far. Therefore, we set up a coevolution experiment using four genetically distinct lines of Tribolium castaneum and its natural obligately killing microsporidian parasite, Nosema whitei. After 13 generations of experimental coevolution, we employed a time-shift experiment infecting hosts from the current generation with parasites from nine different time points in coevolutionary history. Although initially parasite-induced mortality showed synchronized fluctuations across lines, a general decrease over time was observed, potentially reflecting evolution towards optimal levels of virulence or a failure to adapt to coevolving sexual hosts.
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    A quantitative real-time polymerase chain reaction assay for the seagrass pathogen Labyrinthula zosterae (2011)
    Wiley
    In:  Molecular Ecology Resources, 11 (6). pp. 1076-1081.
    Details
    Publication Date: 2019-09-23
    Description: The protist Labyrinthula zosterae (Phylum Bigyra, sensu Tsui et al. 2009) has been identified as a causative agent of wasting disease in eelgrass (Zostera marina), of which the most intense outbreak led to the destruction of 90% of eelgrass beds in eastern North America and western Europe in the 1930s. Outbreaks still occur today, albeit at a smaller scale. Traditionally, L. zosterae has been quantified by measuring the necrotic area of Z. marina leaf tissue. This indirect method can however only lead to a very rough estimate of pathogen load. Here, we present a quantitative real-time polymerase chain reaction (qPCR) approach to directly detect and quantify L. zosterae in eelgrass tissue. Based on the internal transcribed spacer (ITS) sequences of rRNA genes, species-specific primers were designed. Using our qPCR, we were able to quantify accurately and specifically L. zosterae load both from culture and eelgrass leaves using material from Europe and North America. Our detection limit was less than one L. zosterae cell. Our results demonstrate the potential of this qPCR assay to provide rapid, accurate and sensitive molecular identification and quantification of L. zosterae. In view of declining seagrass populations worldwide, this method will provide a valuable tool for seagrass ecologists and conservation projects.
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    Acclimation to ocean acidification during long-term CO2 exposure in the cold-water coral Lophelia pertusa (2012)
    Wiley
    In:  Global Change Biology, 18 (3). pp. 843-853.
    Details
    Publication Date: 2018-05-17
    Description: Ocean acidity has increased by 30% since preindustrial times due to the uptake of anthropogenic CO2 and is projected to rise by another 120% before 2100 if CO2 emissions continue at current rates. Ocean acidification is expected to have wide-ranging impacts on marine life, including reduced growth and net erosion of coral reefs. Our present understanding of the impacts of ocean acidification on marine life, however, relies heavily on results from short-term CO2 perturbation studies. Here, we present results from the first long-term CO2 perturbation study on the dominant reef-building cold-water coral Lophelia pertusa and relate them to results from a short-term study to compare the effect of exposure time on the coral's responses. Short-term (1 week) high CO2 exposure resulted in a decline of calcification by 26–29% for a pH decrease of 0.1 units and net dissolution of calcium carbonate. In contrast, L. pertusa was capable to acclimate to acidified conditions in long-term (6 months) incubations, leading to even slightly enhanced rates of calcification. Net growth is sustained even in waters sub-saturated with respect to aragonite. Acclimation to seawater acidification did not cause a measurable increase in metabolic rates. This is the first evidence of successful acclimation in a coral species to ocean acidification, emphasizing the general need for long-term incubations in ocean acidification research. To conclude on the sensitivity of cold-water coral reefs to future ocean acidification further ecophysiological studies are necessary which should also encompass the role of food availability and rising temperatures.
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    Depth attenuation of organic matter export associated with jelly falls (2011)
    ASLO (Association for the Sciences of Limnology and Oceanography) | Wiley
    In:  Limnology and Oceanography, 56 . pp. 1917-1928.
    Details
    Publication Date: 2019-08-08
    Description: We explore the attenuation in the export ratio of jelly-POM (particulate organic matter) with depth as a function of the decay rate, temperature, and sedimentation rate. Using data from the Vertical Transport In the Global Ocean project, we compare ratios computed with the Martin-curve, with a particle-based parameterization, and with sediment-trap data. Owing to the temperature dependence of the decay rate (Q10 5 4.28), the jelly-POM export ratio below 500m is 2045% larger in subpolar and temperate areas than in the tropics. Vertical migration of gelatinous zooplankton leads to a variable starting depth of a jelly fall (death depth), which governs the start of remineralization, and the fate of the biomass. Owing to the absence of observations, we employ a sinking speed matrix ranging from 100 m d21 to 1500 m d21 to represent slow- and fast-sinking carcasses. The assumption of a constant decay rate k independent of temperature in other particle-based models may not be appropriate. These results provide information for including jelly-POM in global biogeochemical model formulations.
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    Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2010 - 30 September 2010 (2011)
    Wiley
    In:  Molecular Ecology Resources, 11 (1). pp. 219-222.
    Details
    Publication Date: 2019-07-05
    Description: This article documents the addition of 229 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Acacia auriculiformis × Acacia mangium hybrid, Alabama argillacea, Anoplopoma fimbria, Aplochiton zebra, Brevicoryne brassicae, Bruguiera gymnorhiza, Bucorvus leadbeateri, Delphacodes detecta, Tumidagena minuta, Dictyostelium giganteum, Echinogammarus berilloni, Epimedium sagittatum, Fraxinus excelsior, Labeo chrysophekadion, Oncorhynchus clarki lewisi, Paratrechina longicornis, Phaeocystis antarctica, Pinus roxburghii and Potamilus capax. These loci were cross-tested on the following species: Acacia peregrinalis, Acacia crassicarpa, Bruguiera cylindrica, Delphacodes detecta, Tumidagena minuta, Dictyostelium macrocephalum, Dictyostelium discoideum, Dictyostelium purpureum, Dictyostelium mucoroides, Dictyostelium rosarium, Polysphondylium pallidum, Epimedium brevicornum, Epimedium koreanum, Epimedium pubescens, Epimedium wushanese and Fraxinus angustifolia.
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    Tephra stratigraphy on the North Icelandic shelf: extending tephrochronology into marine sediments off North Iceland (2012)
    Wiley
    In:  Boreas, 41 (4). pp. 719-734.
    Details
    Publication Date: 2016-11-04
    Description: Tephra stratigraphical and tephrochronological studies of marine core MD99-2275 on the North Icelandic shelf have revealed 58 new tephra horizons within the last 7050 cal. a BP, bringing the total number of identified tephra layers to 76. So far, over 100 tephra layers have been identified in the entire core spanning the last 15 000 years. The majority of the newly identified tephra layers are basaltic in composition and originate from the most active volcanic systems in Iceland, namely Grímsvötn, Veidivötn-Bárdarbunga and Katla. A total of 40 tephra layer land–sea correlations have been made within this time period, of which 16 represent absolutely dated tephra markers. In addition, two tephra marker series are revealed in the marine sediments and in the terrestrial tephra stratigraphy, located between c. 2300–2600 and between 5700–5900 years. For the last 15 000 years, 21 tephra markers have been recognized. The marine tephra layer frequency (TLF) reveals two peaks, within the last 2000 years, and between 5000 and 7000 years ago. It shows the same general characteristics as the terrestrial TLF curve in Iceland, which indicates that marine sediments can yield important information about volcanism in Iceland. This is useful in time segments in which terrestrial records are poor or non-existent. The study contributes to a high-resolution tephrochronological framework on the North Icelandic shelf, with core MD99-2275 representing a potential stratotype section in the area, and for the northern North Atlantic–Nordic Seas region, as well as being an important contribution to the Lateglacial–early Holocene volcanic history of Iceland.
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    Impacts of Climate Change on Regulating Nitrogen Retention in the River Weiße Elster in Germany (2011)
    IAHS Press
    In:  Water Quality: Current Trends and Expected Climate Change Impacts | IAHS publication ; 348
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    Publication Date: 2022-03-21
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    Changing Floods in Europe (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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    Publication Date: 2022-03-21
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    Introduction (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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    Historical Floods in Europe in the Past Millennium (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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    Publication Date: 2022-03-21
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    Detection of Changes (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS Special Publication 10
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    Detection and Attribution of Changes in Water Resources (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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    Publication Date: 2022-03-21
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    Changes in Flood Risk - Setting the Stage (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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    Urban Weather, Climate and Air Quality Modeling: Increasing Resolution and Accuracy Using Improved Urban Morphology (2011)
    Wiley
    In:  Urban Remote Sensing: Monitoring, Synthesis and Modeling in the Urban Environment
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    Publication Date: 2022-03-21
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    Flood Risk from a Holistic Perspective - Observed Changes in Germany (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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    Publication Date: 2022-03-21
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    Water Quality: Current Trends and Expected Climate Change Impacts (2011)
    IAHS Press
    In:  IAHS publication
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  • 85
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    Modelling of the Climate Change Effects on Nitrogen Loads in the Jizera Catchment, Czech Republic (2011)
    IAHS Press
    In:  Water Quality: Current Trends and Expected Climate Change Impacts | IAHS Publication ; 348
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  • 86
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    Floods in Poland (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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  • 87
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    Catalogue of Large Floods in Europe in the 20th Century (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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  • 88
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    Large-scale Flooding in Europe, 1961-2005 (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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  • 89
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    Changes in Flood Risk in Europe (2012)
    IAHS Press
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  • 90
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    Detection and Attribution of Changes in Flood Hazard and Risk (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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    Detection and Attribution of Climate Change and Its Impacts (2012)
    IAHS Press
    In:  Changes in Flood Risk in Europe | IAHS special publication ; 10
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