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  • Maps  (2)
  • Other Sources  (18)
  • Wiley-Blackwell  (7)
  • American Society for Microbiology  (6)
  • Cambridge University Press
  • Essen : Verl. Glückauf
  • Krefeld : Geologischer Dienst Nordhein-Westfalen
  • Lower Hutt : Institute of Geological and Nuclear Sciences
  • 2005-2009  (20)
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  • Articles  (1,285)
  • Maps  (2)
  • Other Sources  (18)
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  • 2005-2009  (20)
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  • 1
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    Wiley-Blackwell
    In:  Journal of Quaternary Science, 23 (1). pp. 3-20.
    Publication Date: 2017-04-06
    Description: Investigations indicate that the Iceland Ice Sheet was reduced in size during MIS 3 but readvanced to the shelf break at the LGM. Retreat occurred very rapidly around 15 k–16 k cal. yr BP. By contrast, the margin of the ice sheet on the East Greenland shelf, north of the Denmark Strait, was at or close to the shelf break during MIS 3 and 2 and retreat starting ∼17 k cal. yr BP. Quantitative X-ray diffraction analysis of the 〈2 mm sediment fraction was undertaken on 161 samples from Iceland and East Greenland diamictons, and from cores on the slopes and margins of the Denmark Strait. Weight% mineralogical data are used in a principal component analysis to differentiate sediments derived from the two margins. The first two PC axes explain 52% of the variance. These associations are used to characterise sediments as being affiliated with (a) Iceland, (b) East Greenland or (c) mixed. The contribution from Iceland becomes prominent during MIS 2. The extensive outcrop of early Tertiary basalts on East Greenland between 68° and 71° N is an alternative source for basaltic clasts and North Atlantic sediments with εNd(0) values close to ±0.
    Type: Article , PeerReviewed
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  • 2
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    American Society for Microbiology
    In:  Applied and Environmental Microbiology, 74 (6). pp. 1922-1931.
    Publication Date: 2016-09-05
    Description: Understanding the factors that influence the distribution and abundance of marine diazotrophs is important in order to assess their role in the oceanic nitrogen cycle. Environmental DNA samples from four cruises to the North Atlantic Ocean, covering a sampling area of 0°N to 42°N and 67°W to 13°W, were analyzed for the presence and amount of seven nifH phylotypes using real-time quantitative PCR and TaqMan probes. The cyanobacterial phylotypes dominated in abundance (94% of all nifH copies detected) and were the most widely distributed. The filamentous cyanobacterial type, which included both Trichodesmium and Katagnymene, was the most abundant (51%), followed by group A, an uncultured unicellular cyanobacterium (33%), and gamma A, an uncultured gammaproteobacterium (6%). Group B, unicellular cyanobacterium Crocosphaera, and group C Cyanothece-like phylotypes were not often detected (6.9% and 2.3%, respectively), but where present, could reach high concentrations. Gamma P, another uncultured gammaproteobacterium, was seldom detected (0.5%). Water temperature appeared to influence the distribution of many nifH phylotypes. Very high (up to 1 × 106 copies liter−1) nifH concentrations of group A were detected in the eastern basin (25 to 17°N, 27 to 30°W), where the temperature ranged from 20 to 23°C. The highest concentrations of filamentous phylotypes were measured between 25 and 30°C. The uncultured cluster III phylotype was uncommon (0.4%) and was associated with mean water temperatures of 18°C. Diazotroph abundance was highest in regions where modeled average dust deposition was between 1 and 2 g/m2/year.
    Type: Article , PeerReviewed
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  • 3
    Publication Date: 2020-07-24
    Description: Myrionecta rubra, a ubiquitous planktonic ciliate, has received much attention due to its wide distribution, occurrence as a red tide organism, and unusual cryptophyte endosymbiont. Although well studied in coastal waters, M. rubra is poorly examined in the open ocean. In the Irminger Basin, North Atlantic, the abundance of M. rubra was 0–5 cells/ml, which is low compared with that found in coastal areas. Distinct patchiness (100 km) was revealed by geostatistical analysis. Multiple regression indicated there was little relationship between M. rubra abundance and a number of environmental factors, with the exception of temperature and phytoplankton biomass, which influenced abundance in the spring. We also improve on studies that indicate distinct size classes of M. rubra; we statistically recognise four significantly distinct width classes (5–16, 12–23, 18–27, 21–33 μm), which decrease in abundance with increasing size. A multinomial logistic regression revealed the main variable correlated with this size distribution was ambient nitrate concentration. Finally, we propose a hypothesis for the distribution of sizes, involving nutrients, feeding, and dividing of the endosymbiont.
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  • 4
    Publication Date: 2015-07-03
    Description: Many marine sponges, hereafter termed high-microbial-abundance (HMA) sponges, harbor large and complex microbial consortia, including bacteria and archaea, within their mesohyl matrices. To investigate vertical microbial transmission as a strategy to maintain these complex associations, an extensive phylogenetic analysis was carried out with the 16S rRNA gene sequences of reproductive (n = 136) and adult (n = 88) material from five different Caribbean species, as well as all published 16S rRNA gene sequences from sponge offspring (n = 116). The overall microbial diversity, including members of at least 13 bacterial phyla and one archaeal phylum, in sponge reproductive stages is high. In total, 28 vertical-transmission clusters, defined as clusters of phylotypes that are found both in adult sponges and their offspring, were identified. They are distributed among at least 10 bacterial phyla and one archaeal phylum, demonstrating that the complex adult microbial community is collectively transmitted through reproductive stages. Indications of host-species specificity and cospeciation were not observed. Mechanistic insights were provided using a combined electron microscopy and fluorescence in situ hybridization analysis, and an indirect mechanism of vertical transmission via nurse cells is proposed for the oviparous sponge Ectyoplasia ferox. Based on these phylogenetic and mechanistic results, we suggest the following symbiont transmission model: entire microbial consortia are vertically transmitted in sponges. While vertical transmission is clearly present, additional environmental transfer between adult individuals of the same and even different species might obscure possible signals of cospeciation. We propose that associations of HMA sponges with highly sponge-specific microbial communities are maintained by this combination of vertical and horizontal symbiont transmission
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  • 5
    Publication Date: 2017-01-31
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  • 6
    Publication Date: 2016-04-26
    Description: Starch and pullulan-modifying enzymes of the α-amylase family (glycoside hydrolase family 13) have several industrial applications. To date, most of these enzymes have been derived from isolated organisms. To increase the number of members of this enzyme family, in particular of the thermophilic representatives, we have applied a consensus primer-based approach using DNA from enrichments from geothermal habitats. With this approach, we succeeded in isolating three new enzymes: a neopullulanase and two cyclodextrinases. Both cyclodextrinases displayed significant maltogenic amylase side activity, while one showed significant neopullulanase side activity. Specific motifs and domains that correlated with enzymatic activities were identified; e.g., the presence of the N domain was correlated with cyclodextrinase activity. The enzymes exhibited stability under thermophilic conditions and showed features appropriate for biotechnological applications.
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  • 7
    Publication Date: 2017-11-14
    Description: This paper documents the arrival of Diplosoma listerianum into a habitat with no previously known history of the species. Once established, D. listerianum exploited rapid growth rates relative to the other fouling species present, to quickly become the dominant species in a local fouling assemblage. Most resident macrofoulers were out-competed for space and overgrown, although some resistance to overgrowth was demonstrated by the bryozoan Umbonula littoralis and the tunicate Ascidiella aspersa. In this instance, traits traditionally considered to be relevant for community resistance towards invasion, such as diversity, richness, dominant species identity and open space were not important in controlling the spread of D. listerianum
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  • 8
    Publication Date: 2019-09-23
    Description: The effect of primer specificity for studying the diversity of ammonia-oxidizing betaproteobacteria (βAOB) was evaluated. βAOB represent a group of phylogenetically related organisms for which the 16S rRNA gene approach is especially suitable. We used experimental comparisons of primer performance with water samples, together with an in silico analysis of published sequences and a literature review of clone libraries made with four specific PCR primers for the βAOB 16S rRNA gene. With four aquatic samples, the primers NitA/NitB produced the highest frequency of ammonia-oxidizing-bacterium-like sequences compared to clone libraries with products amplified with the primer combinations βAMOf/βAMOr, βAMOf/Nso1255g, and NitA/Nso1225g. Both the experimental examination of ammonia-oxidizing-bacterium-specific 16S rRNA gene primers and the literature search showed that neither specificity nor sensitivity of primer combinations can be evaluated reliably only by sequence comparison. Apparently, the combination of sequence comparison and experimental data is the best approach to detect possible biases of PCR primers. Although this study focused on βAOB, the results presented here more generally exemplify the importance of primer selection and potential primer bias when analyzing microbial communities in environmental samples.
    Type: Article , PeerReviewed
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  • 9
    Publication Date: 2016-05-27
    Description: A visible tephra horizon in the NGRIP ice core has been identified by geochemical analysis as the Fugloyarbanki Tephra, a widespread marker horizon in marine cores from the Faroe Islands area and the northern North Atlantic. An age of 26 740 ± 390 yr b2k (1s uncertainty) is derived for this tephra according to the new Greenland Ice Core Chronology (GICC05) based on multiparameter counting of annual layers. Detection of this tephra for the first time within the NGRIP ice core provides a key tie-point between marine and ice-core records during the transition between MIS 3 and 2. Identification of this volcanic event within the Greenland records demonstrates the future potential of using tephrochronology to precisely correlate palaeoarchives in widely separated localities that span the last glacial period, as well as providing a potential method for examining the extent of the radiocarbon marine reservoir effect at this time.
    Type: Article , PeerReviewed
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  • 10
    Publication Date: 2016-04-26
    Description: Sulfur-oxidizing epsilonproteobacteria are common in a variety of sulfidogenic environments. These autotrophic and mixotrophic sulfur-oxidizing bacteria are believed to contribute substantially to the oxidative portion of the global sulfur cycle. In order to better understand the ecology and roles of sulfur-oxidizing epsilonproteobacteria, in particular those of the widespread genus Sulfurimonas, in biogeochemical cycles, the genome of Sulfurimonas denitrificans DSM1251 was sequenced. This genome has many features, including a larger size (2.2 Mbp), that suggest a greater degree of metabolic versatility or responsiveness to the environment than seen for most of the other sequenced epsilonproteobacteria. A branched electron transport chain is apparent, with genes encoding complexes for the oxidation of hydrogen, reduced sulfur compounds, and formate and the reduction of nitrate and oxygen. Genes are present for a complete, autotrophic reductive citric acid cycle. Many genes are present that could facilitate growth in the spatially and temporally heterogeneous sediment habitat from where Sulfurimonas denitrificans was originally isolated. Many resistance-nodulation-development family transporter genes (10 total) are present; of these, several are predicted to encode heavy metal efflux transporters. An elaborate arsenal of sensory and regulatory protein-encoding genes is in place, as are genes necessary to prevent and respond to oxidative stress.
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  • 11
    Publication Date: 2019-09-23
    Description: The pseudocolonial coral Lophelia pertusa (Scleractinia, Caryophylliidae) is a eurybathic, stenothermal cosmopolitan cold-water species. It occurs in two color varieties, white and red. L. pertusa builds vast cold-water coral reefs along the continental margins, which are among the most diverse deep-sea habitats. Microbiology of L. pertusa has been in scientific focus for only a few years, but the question of whether the coral holds a host-specific bacterial community has not been finally answered. Bacteria on coral samples from the Trondheimsfjord (Norway) were characterized by the culture-independent 16S rRNA gene-based techniques terminal restriction fragment length polymorphism and sequence analysis. L. pertusa revealed a high microbial richness. Clone sequences were dominated by members of the Alpha- and Gammaproteobacteria. Other abundant taxa were Bacteroidetes, Actinobacteria, Verrucomicrobia, Firmicutes, and Planctomycetes. The bacterial community of L. pertusa not only differed conspicuously from that of the environment but also varied with both the location and color variety of its host. Therefore, the microbial colonization cannot be termed “specific” sensu stricto. However, similarities to other coral-bacterium associations suggest the existence of “cold-water coral-specific” bacterial groups sensu lato. L. pertusa-associated bacteria appear to play a significant role in the nutrition of their host by degradation of sulfur compounds, cellulose, chitin, and end products of the coral's anaerobic metabolism. Some coral-associated microbes were regarded as opportunistic pathogens. Dominance of mixotrophic members of the Rhodobacteraceae in white L. pertusa could explain the wider dispersal of this phenotype by supplementary nutrition.
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  • 12
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    Wiley-Blackwell
    In:  In: Microbial Ecology of the Oceans. Wiley-Blackwell, Hoboken, NJ, pp. 383-441. 2. Edition ISBN 978-0-470-04344-8
    Publication Date: 2019-12-06
    Type: Book chapter , NonPeerReviewed
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  • 13
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    Wiley-Blackwell
    In:  Fish and Fisheries, 9 (4). pp. 450-461.
    Publication Date: 2016-12-13
    Description: Archived scales and otoliths constitute a unique source of DNA that potentially enables extension of the temporal scale of genetic studies of fish populations by decades and even centuries. We review recent insights into fish population and conservation genetics obtained using analysis of DNA from archived samples. This involves both new knowledge about demographic parameters and population structure in wild populations and insights into consequences of anthropogenic pressure resulting from over-harvesting, habitat degradation and stocking. We show that the latter category of studies have led to significant changes of management practices. Ongoing improvement of genetic methods will undoubtedly further expand the ability to utilize historical DNA samples. We envisage that temporal comparisons of large numbers of coding genes will lead to novel insights into selective responses of fish populations to anthropogenic challenges, particularly fisheries-induced selection and global warming. However, both acquisition and storage of historical DNA samples can be hurdles to temporal genetic analyses, while degradation and low copy number in historical DNA samples render genetic data from such sources prone to technical artefacts. We summarize recommendations for storage of samples and DNA extraction and provide checklists for validation of genotyping results. Finally, we stress that validation procedures also involve documentation of the time and population of origin of historical samples, and the inferences drawn should account for the technical and statistical uncertainties associated with historical DNA analysis.
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  • 14
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    Cambridge University Press
    In:  Journal of the Marine Biological Association of the United Kingdom, 88 (5). pp. 1019-1023.
    Publication Date: 2021-08-30
    Description: A total of 104 Semirossia patagonica were collected all over the Patagonian shelf between the depths of 47 and 295 m. Mature female size varied from 10 to 35 mm ML, mature male size was 16–32 mm. Potential fecundity ranged between 527–766 eggs in pre-spawning females, ripe egg size was 3.4–5.0 mm. The oviduct capacity probably was no more than 30 eggs. The maximum number of spermatophores in males was 229. Males transfer 2–19 spermatophores to females during copulation. The ovulation pattern is asynchronous, individual spawning is continuous. Reproduction occurs all year round. Semirossia patagonica is a south-west Atlantic ecological sibling of north-east Atlantic bobtail squids Sepiola spp. and Sepietta spp.
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  • 15
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    Cambridge University Press
    In:  Marine Biodiversity Records, 1 . Art.-Nr.: e50.
    Publication Date: 2021-09-06
    Description: Recent scientific and commercial deepwater trawls provide evidence that the loliginid squid, Loligo gahi occurs much deeper than previously believed. Three immature and maturing squids were caught in two hauls between 528 and 626 m depth, exceeding the previous maximum recorded depth of 400 m. An L. gahi egg mass was found on the bottom attached to polychaete tube sampled from depths of 68–71 m. It represents a new spawning habitat, because before the species was known to spawn only in inshore kelp forests, well off the bottom, at depths 〈20 m.
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  • 16
    Publication Date: 2021-08-23
    Description: The jumbo or Humboldt squid, Dosidicus gigas, is an important fisheries resource and a significant participant in regional ecologies as both predator and prey. It is the largest species in the oceanic squid family Ommastrephidae and has the largest known potential fecundity of any cephalopod, yet little is understood about its reproductive biology. We report the first discovery of a naturally deposited egg mass of Dosidicus gigas, as well as the first spawning of eggs in captivity. The egg mass was found in warm water (25–27°C) at a depth of 16 m and was far larger than the egg masses of any squid species previously reported. Eggs were embedded in a watery, gelatinous matrix and were individually surrounded by a unique envelope external to the chorion. This envelope was present in both wild and captive-spawned egg masses, but it was not present in artificially fertilized eggs. The wild egg mass appeared to be resistant to microbial infection, unlike the incomplete and damaged egg masses spawned in captivity, suggesting that the intact egg mass protects the eggs within. Chorion expansion was also more extensive in the wild egg mass. Hatchling behaviours included proboscis extension, chromatophore activity, and a range of swimming speeds that may allow them to exercise some control over their distribution in the wild.
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  • 17
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    Wiley-Blackwell
    In:  Oikos, 117 (5). pp. 754-762.
    Publication Date: 2019-09-23
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  • 18
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    Cambridge University Press
    In:  Proceedings of the International Astronomical Union (2007)
    Publication Date: 2022-03-21
    Type: info:eu-repo/semantics/conferenceObject
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  • 19
    Map available for loan
    Map available for loan
    Lower Hutt : Institute of Geological and Nuclear Sciences
    Associated volumes
    Call number: K 18.91981 / R7
    In: Institute of Geological & Nuclear Sciences 1:250.000 geological map, 7
    Type of Medium: Map available for loan
    Pages: 1 Karte , mehrfarbig , Expl. (vi, 77 Seiten) , 66 x 44 cm, gefaltet
    ISBN: 978-0-478-19648-1
    Series Statement: Institute of Geological and Nuclear Sciences 1:250.000 geological map 7
    Language: English
    Location: Upper compact magazine
    Branch Library: GFZ Library
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  • 20
    Map available for loan
    Map available for loan
    Lower Hutt : Institute of Geological and Nuclear Sciences
    Associated volumes
    Call number: K 18.92024 / R7
    In: Institute of Geological & Nuclear Sciences 1:250.000 geological map, 16
    Type of Medium: Map available for loan
    Pages: 1 Karte , mehrfarbig , Explanation (vi, 67 Seiten) , 48 x 56 cm, gefaltet
    ISBN: 978-0-478-19649-8
    Series Statement: Institute of Geological and Nuclear Sciences 1:250.000 geological map 16
    Language: English
    Location: Upper compact magazine
    Branch Library: GFZ Library
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