ALBERT

Description: The anaerobic oxidation of methane (AOM), by converting methane to bicarbonate which is then precipitated as extensive carbonate crusts, is an important methane sink in the Earth’s ocean systems. Here we employ a multidisciplinary approach to investigate the role of microorganisms in carbonate precipitation using biomarker analysis, scanning electron microscopy (SEM) and X-ray diffraction. We examined two microbial mats from the Black Sea and found that one comprised carbonate in both aragonite and Mg calcite forms and most likely ANME-1 archaea, whereas the other contained only Mg calcite and most likely ANME-2 archaea. We conclude, as have others, that the different microbial communities could impart different influences on carbonate mineralogy and morphology. Although further research is needed, this is a contribution to our understanding of those relationships, which could prove critical in the interpretation of ancient sedimentary deposits.

Description: Although rising global sea levels will affect the shape of coastlines over the coming decades1, 2, the most severe and catastrophic shoreline changes occur as a consequence of local and regional-scale processes. Changes in sediment supply3 and deltaic subsidence4, 5, both natural or anthropogenic, and the occurrences of tropical cyclones4, 5 and tsunamis6 have been shown to be the leading controls on coastal erosion. Here, we use satellite images of South American mangrove-colonized mud banks collected over the past twenty years to reconstruct changes in the extent of the shoreline between the Amazon and Orinoco rivers. The observed timing of the redistribution of sediment and migration of the mud banks along the 1,500 km muddy coast suggests the dominant control of ocean forcing by the 18.6 year nodal tidal cycle7. Other factors affecting sea level such as global warming or El Niño and La Niña events show only secondary influences on the recorded changes. In the coming decade, the 18.6 year cycle will result in an increase of mean high water levels of 6 cm along the coast of French Guiana, which will lead to a 90 m shoreline retreat.

Description: In several fields of cell biology, correlative microscopy is applied to compare the structure of objects at high resolution under the electron microscope with low resolution light microscopy images of the same sample. It is, however, difficult to prepare samples and marker systems that are applicable for both microscopic techniques for the same specimen at the same time. In our studies, we used microbial mats from Cold Seep communities for a simple and rapid correlative microscopy method. The mats consist of bacterial and archaeal microorganisms, coupling reverse methanogenesis to the reduction of sulfate. The reverse methanogenic pathway also generates carbonates that precipitate inside the mat and may be the main reason for the formation of a microbial reef. The mat shows highly differentiated aggregates of various organisms, tightly interconnected by extracellular polysaccharides. In order to investigate the role of EPS as adhesive mucilage for the biofilm and as a precipitation matrix for carbonate minerals, samples were embedded in a hydrophilic resin (Lowicryl K4 M). Sections were suitable for light as well as electron microscopy in combination with lectins, either labeled with a fluorescent marker or with colloidal gold. This allows lectin mapping at low resolution for light microscopy in direct comparison with a highly resolved electron microscopic image.

Description: Samples collected from the shelf-edge wedge using surface grab samples and the Jago submersible constrain the KwaZulu-Natal shelf-edge wedge to a late Pliocene age on the basis of the absence of Gephyrocapsa oceanica s.l. and Discoaster brouweri, and the presence of Calcidiscus macintyrei. This correlates with proposed Tertiary sea-level curves for southern Africa and indicates relative sea-level fall during the late Pliocene coupled with hinterland uplift. Exposed failure scarps in the upper portions of submarine canyons yield sediment samples of early Pleistocene ages, indicating the uppermost age of deposition of clinoform topsets exposed in the scarp walls. Partially consolidated, interbedded silty and sandy deposits of similar age outcrop in the thalweg of Leven canyon at a depth of 150 m. These sediments provide an upper age limit of the shelf-edge wedge of early Pleistocene, giving a sedimentation rate of this wedge of 162–309 m/Ma. The distribution of widespread basal-most Pleistocene sediments on the upper slope indicates that these sediments escaped major reworking during sea-level falls associated with Pleistocene glaciations and remain as relict upper slope veneers. The absence of more recent sediments suggests that this area has been a zone of sediment bypass or starvation since the early Pleistocene. Areas where younger sediments mantle deposits of early Pleistocene ages represent areas of offshore bedload parting, re-distributing younger Holocene sediment offshore and downslope.

Description: The four naturally-occurring radium isotopes (223Ra, 224Ra, 226Ra and 228Ra) were used to estimate the submarine groundwater discharge (SGD) in the Isola La Cura marsh area in the northern Venice Lagoon (Italy). By determining the radium contributors to the study area (river, coastal ocean and sediments) the radium excess in the lagoon water was quantified through a mass balance model. This radium excess is attributed to a submarine groundwater discharge source and represents the most important input of radium. Possible endmembers were considered from analysis of groundwater samples (subtidal and marsh piezometers, marsh wells and seepage meters) that were enriched in Ra by one to two orders of magnitude relative to surface waters. In particular, a permeable layer at 80 cm depth in the surrounding marsh is considered to be representative of the most likely SGD source, although similar radium activities were measured in other subtidal porewater samples collected in the Isola La Cura area. The estimated SGD flux to the study area ranged from 1 · 109 to 6 · 109 L·d− 1, the same order of magnitude as the overall riverine input to the lagoon (3 · 109 L·d− 1). A major fraction of this SGD flux is likely recirculated seawater, as evidenced by the endmember salinity. The water residence time of 2 days was estimated by both using the shortest-lived radium isotope and estimating the volume of water exchanged between the lagoon and the open sea during a tidal cycle (tidal prism approach). This SGD flux could be used to estimate the input of other chemical species (metals, nutrients, etc.) via SGD which might affect the Venice Lagoon ecosystem.

Description: There is increasing evidence that submarine groundwater discharge (SGD) in many areas represents a major source of dissolved chemical constituents to the coastal ocean. In Great South Bay, NY, previous studies have shown that the discharge of nutrients with SGD may cause harmful algal blooms. This study estimates SGD to Great South Bay during August 2006 by performing a mass balance for each of the dissolved Ra isotopes (224Ra, 223Ra, 228Ra, 226Ra). The budget indicates a major unknown source (between 30 and 60% of the total input) of Ra to the bay. This imbalance can be resolved by a flux of Ra-enriched groundwater on the order of 3.5–4.5 × 109 L d− 1, depending on the Ra isotope. The Ra-estimated SGD rates compare well with those previously estimated by models of flow that decreases exponentially away from shore. Compared to previous reports of fresh groundwater discharge to the bay, the Ra-estimated discharge must comprise approximately 90% recirculated seawater. The good agreement between Ra- and model-estimated flow rates indicates that the primary SGD endmember may be best sampled at shallow depths in the sediments a short distance bayward of the low tide line.

Description: The Cretaceous is a special episode in the history of the Earth named for a unique rock type, chalk. Chalk is similar to modern deep-sea calcareous ooze and its deposition in epicontinental seas occurred as these areas became an integral part of the ocean. The shelf-break fronts that today separate inshore from open-ocean waters cannot have existed during the Late Cretaceous probably because the higher sea level brought the base of the wind-mixed Ekman layer above the sea floor on the continental margins. A second peculiarity of the Cretaceous is its warm equable climate. Tropical and polar temperatures were warmer than today. Meridional and ocean-continent temperature gradients were lower. The warmer climate was a reflection of higher atmospheric levels of greenhouse gasses, CO2 and possibly CH4, reinforced by higher water vapor content in response to the warmer temperatures. Most of the additional energy involved in the meridional heat transport system was transported as latent heat of vaporization of H20 by the atmosphere. Poleward heat transport may have been as much as 1 Petawatt (20%) greater than it is today. C3 plants provided for more efficient energy transport into the interior of the continents. Circulation of the Cretaceous ocean may have been very different from that of today. It is impossible for large areas of the modern ocean to become anoxic, but episodes of local anoxia occurred during the earlier Cretaceous and became regional to global during the middle of the Cretaceous. The present ocean structure depends on constant wind systems, which in turn depend on stability of the atmospheric pressure systems forced by polar ice. During most of the Cretaceous the polar regions were ice free. Without polar ice there were seasonal reversals of the high-latitude atmospheric pressure systems, resulting in disruption of the mid- and high latitude wind systems. Without constant mid-latitude westerly winds, there would be no subtropical and polar fronts in the ocean, no well-developed ocean pycnocline, and no tropical subtropical gyres dominating ocean circulation. Instead the ocean circulation would be accomplished through mesoscale eddies which could carry warmth to the polar regions. Greater knowledge and understanding of the Cretaceous is critical for learning how the climate system operates when one or both polar regions are ice free.

Description: The Upper Rhine Graben has two Plio-Quaternary depocentres usually interpreted as resulting from tectonic reactivation. The southern basin, near Freiburg im Breisgau (Germany), contains up to 250 m of sediments. Beneath the younger alluvial deposits related to the current drainage system, a former river network deeply entrenched in the substratum reveals a very low regional base level of early Pleistocene age. The offset of channels at faults allows us to infer a Pleistocene reactivation of the syn-rift fault pattern and the estimation of slip rates. Maximum vertical movements along the faults have not exceeded 0.1 mm/yr since the middle Pleistocene. Current activity is concentrated along the westernmost faults. Morphologic markers indicate late Pleistocene reactivation of the Rhine River fault, and geophysical prospecting suggests a near-surface offset of young sedimentary deposits. The size of the fault segments potentially reactivated suggests that earthquakes with magnitude larger than Mw=6.3Mw=6.3 could be expected in the area with a return interval of about 8000 years. Extrapolated to the duration of the Plio-Pleistocene, the strain rate estimates reveal that the tectonic forcing may account for only one-third to one-half of the whole thickness of the Plio-Pleistocene sediments of the basin fill. Thus other processes must be invoked to understand the growth of the Plio-Pleistocene basin. Especially the piracy of the Rhine River to the north during the early Pleistocene could explain these effects.

Description: European eel (Anguilla anguilla) elvers were intraperitoneally injected with different doses of 3,3′,4,4′-tetrachlorobiyphenyl (PCB77) to examine and characterize the inductive effect of coplanar PCBs on CYP1A1 gene expression in liver and gills by using a semi-quantitative RT-PCR analysis. The influence of PCB77 injection on transcription activity of the housekeeping gene glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) was tested to determine its suitability as a reference gene for further quantitative gene expression analyses. Our results clearly indicate a significant dose-dependent increase in CYP1A1 gene expression in the gills of European eel, while in liver tissues a significant elevation in CYP1A1 gene expression was only detectable at highest contamination rates, indicating the potential of CYP1A1 differential gene expression analysis in gills as a biomarker for PCB contamination in eels. PCB77 contamination did not affect GAPDH transcription in gills but, at highest doses, resulted in a significant elevation in liver, speaking against GAPDH as a reference housekeeping gene after PCB exposure.