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  • Transformation  (34)
  • Springer  (34)
  • 1985-1989  (34)
  • 1950-1954
  • 1945-1949
  • 1989  (34)
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  • Springer  (34)
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  • 1985-1989  (34)
  • 1950-1954
  • 1945-1949
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  • 1
    ISSN: 1432-0983
    Keywords: Saccharomyces cerevisiae ; Vector ; Glyphosate resistance ; Transformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The E. coli aroA gene was inserted between yeast promoter and terminator sequences in different shuttle expression plasmids and found to confer enhanced EPSP synthase activity as well as resistance to glyphosate toxicity. Subsequently, a transformation system using these newly constructed vectors in yeast was characterized. The efficiency of the glyphosate resistance marker for transformation and selection with plasmid pHR6/20-1 in S. cerevisiae laboratory strain SHY2 was found to be relatively high when compared with selection for LEU2 prototrophy. The fate of the recombinant plasmid pHR6/20-1 in the transformants, the preservation of the aroA E. coli DNA fragment in yeast, mitotic stability, EPSP synthase activity, and growth on glyphosate-containing medium have been investigated. As this plasmid also allows direct selection for glyphosate resistant transformants on rich media, the glyphosate resistance marker was used for transforming both S. cerevisiae laboratory strain SHY2 and brewer's yeast strains S. cerevisiae var. “uvarum” BHS5 and BHS2. In all cases, the vector pHR6/20-1 was maintained as an autonomously replicating plasmid. The resistance marker is, therefore, suitable for transforming genetically unlabeled S. cerevisiae laboratory, wild, and industrial yeast strains.
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  • 2
    ISSN: 1432-0983
    Keywords: Yarrowia lipolytica ; Invertase ; Secretion ; Transformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Few selective markers are available for the transformation of the industrial yeast Yarrowia lipolytica, and those that are require the use of specialized hosts (e.g., auxotrophs, antibiotic sensitive). To enable the transformation of any Y. lipolytica strain, we used the property that Y. lipolytica cannot use sucrose as a sole carbon source. We have constructed a gene fusion where the Saccharomyces cerevisiae SUC2 gene is placed under the control of the promoter and signal sequence of the Y. lipolytica XPR2 gene, which encodes an Alkaline Extracellular Protease (AEP). Strains bearing this fusion express invertase activity and grow on sucrose as a carbon source. The activity follows the same regulation as does the alkaline extracellular protease, is secreted into the periplasm and confers a Suc+ phenotype. It was shown that this chimeric gene could be used as a dominant marker for transformation in a one-step procedure.
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Current genetics 16 (1989), S. 339-346 
    ISSN: 1432-0983
    Keywords: Yeast ; Transformation ; ss carrier DNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A method, using LiAc to yield competent cells, is described that increased the efficiency of genetic transformation of intact cells of Saccharomyces cerevisiae to more than 1 × 105 transformants per microgram of vector DNA and to 1.5% transformants per viable cell. The use of single stranded, or heat denaturated double stranded, nucleic acids as carrier resulted in about a 100 fold higher frequency of transformation with plasmids containing the 2μm origin of replication. Single stranded DNA seems to be responsible for the effect since M13 single stranded DNA, as well as RNA, was effective. Boiled carrier DNA did not yield any increased transformation efficiency using spheroplast formation to induce DNA uptake, indicating a difference in the mechanism of transformation with the two methods.
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  • 4
    ISSN: 1432-0983
    Keywords: Kluyveromyces lactis ; Transformation ; pKD1 ; Recombination
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The host specificity of the 2μ-like circular plasmid pKD 1 is such that this plasmid replicates stably in several species of Kluyveromyces yeasts, but not in Saccharomyces cerevisiae. pKD 1-derived plasmids containing various parts of the pKD 1 sequence were capable of transforming Kluyveromyees lactis with high efficiency. When such vectors were introduced into host strains that contained resident pKD1 plasmid, the input DNA frequently recombined with it to produce high proportions of additive recombinant molecules that replicate stably. Recombination events were shown to occur with vectors differing for the presence or absence of the putative origin of replication and of the inverted repeats. Structure, stability and copy number of the recombination products were analyzed for various types of vectors.
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  • 5
    ISSN: 1432-0983
    Keywords: Aspergillus oryzae ; pyrG ; β-galactosidase ; β-glucuronidase ; Transformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A homologous transformation system for Aspergillus oryzae is described. The system is based on an A. oryzae strain deficient in orotidine-5′-phosphate decarboxylase (pyrG) and the vector pA04-2, which contains a functional A. oryzae pyrG gene as selection marker. Transformation of the A. oryzae pyrG mutant with circular PA04-2 resulted in the appearance of Pyr+ transformants at a frequency of up to 20 per μg of DNA, whereas with linear pA04-2 up to 200 transformants per μg DNA were obtained. In 75 % of the Pyr+ transformants recombination events had occurred at the pyrG locus, most of which (90%) resulted in insertion of one or two copies of the vector and the others (10%) in a replacement of the mutant allele by the wild-type allele. Vector pA04-2 is also capable of transforming a corresponding mutant of Aspergillus niger. This transformation system was used to introduce into A. oryzae the heterologous and non-selectable bacterial genes lacZ, encoding β-galactosidase, and uidA, encoding β-glucuronidase. Using the Aspergillus nidulans gpdA promoter to drive bacterial gene expression in A. oryzae, relatively high levels of activity, as well as protein per se, as judged by western blot analyses, were obtained.
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  • 6
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    Springer
    Current genetics 16 (1989), S. 35-40 
    ISSN: 1432-0983
    Keywords: Coprinus cinereus ; Transformation ; Heterologous expression
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Direct selection for TRP+ transformants of a trp-2 mutant of Coprinus cinereus showed that the gene mutation could be complemented by the heterologous gene from two other basidiomycete species, Schizophyllum commune (trp1) and Phanerochaete chrysosporium (trpC) but not by an ascomycete gene from Aspergillus nidulans (trpC). Cotransformation was used to confirm that the Aspergillus nidulans gene could be integrated but not expressed. Cotransformations were also used to show that the Aspergillus nidulans isocitrate lyase gene (acuD) and a construct containing the bacterial HygB gene fused to a hemibasidiomycete gene promotor from Ustilago maydis were also unexpressed in Coprinus cinereus.
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  • 7
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    Current genetics 16 (1989), S. 57-60 
    ISSN: 1432-0983
    Keywords: Podospora anserina ; Immortal mutant ; Transformation ; Benomyl resistance
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The Podospora anserina immortal mutant incoloris, vivax was transformed to benomyl resistance with a β-tubuline gene from a resistant Neurospora crassa strain. The transforming plasmid was integrated into the genome of the transformants, and subsequent Southern analysis and retransformation experiments provided no evidence for autonomous replication. Non-homologous integration was demonstrated in some of the transformants. Resistance to benomyl varied widely among the transformants and was conserved after the transformants were grown on non-selective medium.
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  • 8
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    Current genetics 16 (1989), S. 95-98 
    ISSN: 1432-0983
    Keywords: Kluyveromyces ; Transformation ; 2μ-like plasmids ; G418 resistance ; pKDI
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary pKDI is a 2μ-like circular plasmid found in the yeast Kluyveromyces drosophilarum that can also stably replicate in Kluyveromyces lactis. We have found a short intergenic region in this genome that appears to be functionally neutral; that is, the introduction of foreign sequences into the single EcoRI restriction site located near one of the inverted repeats did not affect the high stability of the natural plasmid. By introducing a G418 resistance gene at this site, we constructed an autonomous recombinant plasmid. Since this vector did not require cir + hosts for its stable maintenance, it could be used to examine the transformation host range of pKD1 among all the species belonging to the genus Kluyveromyces. Both species closely related to K. drosophilarum as well as a few other species that are very different in chromosomal GC % could be transformed to yield highly stable transformant clones.
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  • 9
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    Current genetics 15 (1989), S. 307-309 
    ISSN: 1432-0983
    Keywords: Penicillium nalgiovense ; Transformation ; amdS gene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Penicillium nalgiovense was transformed with the amdS gene from Aspergillus nidulans as a selectable marker. The vector apparently integrated at multiple sites into the chromosomes of the transformants, which were mitotically stable. A transformation efficiency of 12 transformants/μg vector DNA was achieved when the expression phase was prolonged to 8 h.
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  • 10
    ISSN: 1432-0983
    Keywords: Schwanniomyces occidentalis ; Transformation ; Autonomous replication ; α-Amylase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary High frequency transformation of a Schwanniomyces occidentalis mutant defective in the last step of tryptophan synthesis was achieved with plasmids containing the tryptophan synthetase gene (TRP5) of Saccharomyces cerevisiae and an autonomous replication sequence from S. occidentalis, which we called “SwARS1”. The SwARS1 fragment is also functional in S. cerevisiae. The average copy number of the plasmids in both yeast species was 5–10 per cell under selective conditions. S. occidentalis cells that were transformed with an autonomously replicating plasmid carrying the cloned α-amylase gene from S. occidentalis secreted about five times more α-amylase than cells without additional copies of the α-amylase gene. Both the chromosomal copy and the plasmid-carried copies of the α-amylase gene were repressed in the presence of glucose. This transformation system provides a possibility to improve starch degradation by S. occidentalis.
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  • 11
    Electronic Resource
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    Current genetics 15 (1989), S. 415-420 
    ISSN: 1432-0983
    Keywords: Gliocladium ; Hygromycin B ; Transformation ; Electroporation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Gliocladium roseum and G. virens are saprophytic fungi with biological control activity against various plant pathogens, including those causing seedling diseases in cotton. Genetic transformation systems were developed to provide the potential for incorporating additional traits to improve the biocontrol efficacy of Gliocladium. Gliocladium roseum protoplasts were transformed with G. virens genomic DNA. The 6.7 kb plasmid pH1S containing a bacterial hygromycin B resistance gene, hygB, was used to transform G. virens. Up to ten methionine-independent G. roseum transformants were recovered per microgram of G. virens DNA. Transformation frequencies as high as 150 hygromycin B-resistant transformants per microgram of circular palsmid DNA were observed with electroporation at a field strength of 500 V/cm. Total DNA was isolated from G. virens transformants and hybridized to purified hygB or pBR322 (the vector used in the pH1S construct) DNA. The hygB DNA was integrated into genomic DNA. Precise excision of the plasmid by two different restriction endonucleases provided evidence for the presence of multiple tandem copies in some transformants. The presence of multiple bands in digests of other transformants suggested multiple sites of integration.
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  • 12
    ISSN: 1436-6215
    Keywords: γ-Tocopherol ; Transformation ; α-Tocopherol ; Ratten ; Generationsversuch ; γ-tocopherol ; transformation ; α-tocopherol ; rats ; generation-experiment
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Medicine
    Description / Table of Contents: Summary The biosynthesis of α-tocopherol, the most effective vitamer among the vitamin E-group, is found only in higher plants and microorganisms. Due to the lack of the shikimate pathway, animals are not able to synthesize α-tocopherol. Also not found is a whole enterai synthesis; only the conversion of dimethyletocol to trimethyletocol seems to be possible. Using four generations of rats, we sought to determine: Is a transformation of γ-tocopherol to α-tocopherol in the animal body possible? Are there any differences in the transformation rates in organs, tissues, or in the entire body along the generations? Does gut flora play any role in the conversion of γ-tocopherol? Is it possible to increase the efficiency of the transformation by supplying additional CH3-groups? Wistar rats were fed a semisynthetic basal diet, supplemented with 78.8 mg DL-γ-tocopherol/kg in the first three generations (F1–F3). In the fourth generation (F4), some of the animals were fed a vitamin E-free diet and γ-tocopherol (approx. 1.5 mg on alternate days) was injected s.c. Two other groups of animals received the basal diet containing additional methionine (0.25 %) or choline (0.45 %), as well as γ-tocopherol (as in F1–F3). α- and γ-tocopherol were analyzed by HPTLC in the whole body and in serum, liver, heart, lung, gut, gonads, and feces. The ratio of α-/γ-tocopherol (μg/μg) as transformation rate and vitamin E-biopotency (μg α-tocopherol equivalents/g) were calculated. Growth and fertility were normal until the fourth generation; no abnormal developments could be recognized. α-tocopherol was found in the whole-body as well as in all tissues and organs. In the whole-body, vitamin E-biopotency decreased 25–70 % in F2 and F3. On the other hand, the increase of the transformation rate of γ- to α-tocopherol amounted to 23 % (F2) and 168 % (F3). Highest conversion rates were found in F2 and F3 for feces, followed by gonads and lungs; the lowest rates were found for serum and liver. Due to the s.c.-injection of γ-tocopherol, feces showed a four-times lower transformation rate in F4 than in F3. There was an increase in heart, gut, lung and serum for both transformation rate and vitamin E-biopotency. These parameters could be improved also by the additional supplements of methionine and choline. Both methyl-group-donators revealed nearly the same positive effect. The results show that the animal organism can adapt to γ-tocopherol supply over generations. γ-tocopherol seems to be a direct precursor for the α-tocopherol synthesis. The methylation of γ-tocopherol in the organs and tissues occurs, presumably, according to their specific α-tocopherol requirement.
    Notes: Zusammenfassung Die Biosynthese des α-Tocopherols, des wirksamsten Vitamins innerhalb der Vitamin-E-Gruppe, ist beschränkt auf höhere Pflanzen und Mikroorganismen. Wegen des Fehlens des Shikimatweges vermag der tierische Organismus das α-Tocopherol nicht zu bilden. Auch eine vollständige enterale Synthese ist nicht bekannt. Es wird angenommen, daß die Umwandlung im Tierkörper von Dimethyltocol zum Trimethyltocol möglich sei. In einem Experiment an Ratten über vier Generationen wurde folgenden Fragen nachgegangen: Findet eine Umwandlung von γ- zu α-Tocopherol statt? Ändert sich die Effizienz der Transformation auf Gewebs- und Organebene bzw. im gesamten Körper über die Generationen? Welche Rolle spielt die Darmflora? Kann die Effizienz der Transformation durch zusätzliche Gaben an CH3-Gruppen verbessert werden? Über vier Generationen erhielten Wistarratten eine halbsynthetische Grunddiät mit 78,8 mg DL-γ-Tocopherol/kg (F1–F3). In F4 erhielt ein Teil der Tiere die tocopherolfreie Grunddiät, γ-Tocopherol (ca. 1,5 mg, alle zwei Tage) wurde den Tieren subkutan verabreicht. Weitere zwei Kollektive bekamen mit dem Grundfutter γ-Tocopherol (wie in F1–F3) und zusätzlich Methionin (0,24 %) bzw. Cholin (0,45 %) oral verabreicht. In einer Ganzkörperanalyse in F1–F3 und in Serum, Erythrozyten, Leber, Herz, Lunge, Darm, Gonaden und Kot wurden α- und γ-Tocopherol mittels HPTLC bestimmt. Das Verhältnis α-γ-Tocopherol (μg/μg) und die Vitamin-E-Wirksamkeit (μg α-Tocopheroläquivalente/ml bzw. g FS od. g TS) wurden errechnet. Bis zur 4. Filialgeneration waren Wachstum und Fortpflanzungsfähigkeit normal; keine äußeren oder anatomischen Abnormitäten wurden beobachtet. Im Gesamtkörper und in Geweben und Organen der Generationen F1–F4 wurde α-Tocopherol gefunden. Gemessen an den Ergebnissen der Ganzkörperanalyse nahm die Vitamin-E-Wirksamkeit in F2 um 25 % und in F3 um 70 % ab. Die Effizienz der γ-Tocopheroltransformation stieg dagegen um 23 % in F2 und 168 % in F3. Höchste Transformationsraten wurden in F2 und F3 für Kot, gefolgt von Gonaden und Lunge, festgestellt, die niedrigsten für Serum und Leber. Durch die subkutane γ-Tocopherolapplikation war die Transformationsrate im Kot in F4 um Faktor 4 schlechter als in F3. Die Effizienz der Transformation und die Vitamin-E-Wirksamkeit nahmen in Herz, Dickdarm, Lunge und Serum zu. Ebenso besser fielen die Werte für diese Parameter unter der Mehrzufuhr an Methionin und Cholin, wobei sich mit beiden Methylgruppendonatoren die gleiche positive Wirkung erzielen ließ. Die Ergebnisse zeigten, daß sich der Körper an eine γ-Tocopherolzufuhr über Generationen adaptieren kann. γ-Tocopherol dient auch im tierischen Organismus als unmittelbare Vorstufe der α-Tocopherolsynthese. Dieser Syntheseschritt erfolgt wahrscheinlich über eine Transmethylierungsreaktion in den verschiedenen Geweben und Organen gemäß ihrem spezifischen Bedarf an α-Tocopherol.
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  • 13
    ISSN: 1432-203X
    Keywords: Zea mays L. ; Transformation ; Protoplast ; Kanamycin ; β-glucuronidase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The importance of cell culture conditions, including the use of feeder cells, on protoplast growth and transformation in maize (Zea mays L.) was investigated. Total GUS activity, measured two days after transformation, was five-fold higher in protoplasts cultured on feeder cells compared to those grown in the absence of feeder cells. Since the specific activity of GUS was only slightly higher in the transformed protoplasts plated over feeder cells, the stimulation in transient gene expression resulted mainly from the improved environment provided by the feeder system. For stable transformation, either PEG treatment or electroporation of protoplasts was used to introduce the neo gene. When PEG was used, over 85% of the putative transformants (resistant to kanamycin) contained the neo gene. The combination of PEG transformation and the optimized cell culture protocol using feeder cells enabled the selection of about 100 stably transformed lines per gFW of cells. Electroporation was less efficient.
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  • 14
    ISSN: 1432-203X
    Keywords: Pisum sativum L. ; Transformation ; T-DNA ; Opines
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary To determine the best combination for potential use in transformation of Pisum sativum L., 13 genotypes were inoculated with wild-type Agrobacterium tumefaciens strains A281, C58 and Ach5. A281 appeared to be the most virulent strain, as determined by size and number of tumours, followed by C58 and Ach5. Genotypes differed considerably in their response to inoculation and genotype x strain interaction was evident. Genotypes also responded differently to in vivo or in vitro inoculation. Axenic calli from tumours could be grown on hormone-free medium and the presence of the specific opines for each strain in the callus indicated successful transfer and expression of T-DNA. Southern blot analysis of DNA from callus of A281-inoculated material showed that both TR and TL T-DNA had been incorporated into the pea genome.
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  • 15
    ISSN: 1432-2048
    Keywords: Agrobacterium ; Auxin and thiophene in roots ; Root culture ; Root morphology ; Tagetes ; Thiophene ; Transformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Roots of marigold (Tagetes patula L.) accumulate thiophenes, heterocyclic sulfurous compounds with strong biocidal activity. In detached roots cultured in vitro, the thiophene content was 5 μmol·(g fresh weight)-1 which is 25-times higher than in roots attached to the plant. In roots derived from tissues transformed by Agrobacterium tumefaciens and A. rhizogenes, the morphology and thiophene content varied with the bacterial strain used. Transformation stimulated the elongation of the root tips and the formation of lateral roots but lowered the thiophene level to 20–50% relative to the concentration in untransformed detached roots. A negative correlation was found between the number of laterals in a root system and the thiophene content. Extensive branching and a decrease in thiophene accumulation was evoked in untransformed roots by indole-3-acetic acid (1–10 μmol·l-1) added to the medium. Within the roots, the highest thiophene concentrations were found in the tips. The results indicate that auxin directly or indirectly plays a role in the regulation of the thiophene level in root tips.
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  • 16
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    Theoretical and applied genetics 77 (1989), S. 469-472 
    ISSN: 1432-2242
    Keywords: Hordeum vulgare ; Transformation ; Trans-genosis ; Electrophoresis ; Embryos of plants
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A method is described for transfection (genetic transformation) of barley caryopsis electrophoretically with DNA. β-Glucuronidase activity was detected after the electrophoretic transfection with plasmid pBI221 DNA carrying the cauliflower mosaic virus promotor and bacterial β-glucuronidase coding sequence. Electrophoretic transfection is evidently effective with pieces of callus and seeds of many plants.
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  • 17
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    Theoretical and applied genetics 78 (1989), S. 831-835 
    ISSN: 1432-2242
    Keywords: Haploid ; Transformation ; Canola ; Octopine ; Agrobacterium tumefaciens
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Microspore-derived embryos of Brassica napus were transformed using the disarmed octopine-producing LBA4404 strain of Agrobacterium tumefaciens containing the binary vector pBin19. Octopine-producing strains have previously been reported to be ineffective in transforming Brassica. Four actively growing yellow/ green sectors were selected from the embryos on 50 mg/l kanamycin and plants regenerated. Analysis for NPT-II activity in these young plants initially indicated no expression of the bacterial NPT-II gene. The plants were nevertheless grown to maturity, selfed and S1 seed was collected. Three of the S1 plants produced microspores which were from 4 to 20 times more tolerant to kanamycin than the original parent. Southern analysis revealed that one plant (EC-1) had a single site of insertion and the other two plants (EC-2 and EC-6) had two sites of insertion with sequence homology to the bacterial NPT-II gene. Microspores from the EC-2 and EC-6 transgenics produced embryos on approximately five times the level of kanamycin tolerated by microspores from untransformed plants, while the EC-1 transgenic produced microspores with more than 20 times the tolerance to kanamycin. Analysis of S1 progeny of the EC-1 transgenic indicated that 100% of the progeny exhibited the trait through both Southern analysis and by expressing tolerance to kanamycin in microspore-derived embryos.
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  • 18
    ISSN: 1432-0878
    Keywords: M. soleus ; M. extensor digitorum longus ; Neuromuscular junction ; Motor end-plate ; Synaptic membranes ; Transformation ; Rat (Wistar)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary In normal (untreated) rats the mean length ratio of postsynaptic to presynaptic membrane was 2.7±0.8 for neuromuscular junctions of slow-twitch soleus muscle fibres and 4.2±1.0 for neuromuscular junctions of fast-twitch extensor digitorum longus muscle fibres; this difference was significant (P〈0.001). After experimental double innervation by fast and slow muscle nerves for four months, the ratio was (1) 2.9±0.8 for the original slow-twitch fibre end-plate and 2.8±0.8 for the newly established one, both not significantly different from that of the normal slow-twitch fibres; and (2) 2.2±0.5 for the original fast-twitch fibre end-plate and 2.2±0.7 for the newly established one, both significantly smaller than that of the normal fast-twitch fibres (P〈0.001). This means that the double innervated slow-twitch muscle fibres retained their original neuromuscular junction type, whereas the doubly-innervated fast-twitch muscle fibres underwent a dramatic transformation of their neuromuscular junction from the fast-muscle to the slow-muscle type. In both doubly innervated fibres, the ultrastructural characteristics of neuromuscular junctions, whether altered or not, were identical at both end-plate regions.
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  • 19
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    Molecular genetics and genomics 217 (1989), S. 53-59 
    ISSN: 1617-4623
    Keywords: Transposable elements ; Transgenic tobacco ; Maize ; Transformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A two component maize transposon system comprising a stable but trans-active Ac element and a cis responsive Ds element has been established in transgenic tobacco. The development of this system is desirable for the realization of a gene tagging strategy employing these elements in heterologous plant species. Transgenic tobacco with a single transposed Ac element (Ac-18) which has sustained a 4 bp terminal deletion has been identified. Transposase activity of the stable Ac-18 was demonstrated in a tissue culture assay as well as in transgenic plants. When plants containing Ac-18 were crossed with transgenic plants carrying a Ds element, 25%–50% of the F1 progeny showed trans-activation of Ds transposition. Analysis of DNA of several F1 plants showed that each plant displayed a unique pattern of Ds transposition to new chromosomal sites.
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  • 20
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    Molecular genetics and genomics 216 (1989), S. 175-177 
    ISSN: 1617-4623
    Keywords: Transformation ; Electroporation ; Gram-negative bacteria ; pKT231
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We have undertaken a systematic study to test the transformation of various species of gram-negative bacteria using the electroporation method. The data obtained show very clearly that a great variety of gram-negative bacteria — 15 different species belonging to 11 different genera — including freshly isolated wild-type strains can be transformed efficiently by use of the electric-field mediated transformation technique. These include species of the families Enterobacteriaceae, Pseudomonadaceae, Rhizobiaceae, photosynthetic bacteria and strains for which transformation could not be achieved, up to now, by other methods.
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  • 21
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    Molecular genetics and genomics 218 (1989), S. 87-92 
    ISSN: 1617-4623
    Keywords: Aspergillus nidulans ; Transformation ; Acetate ; Malate synthase ; Acetyl-Coenzyme A synthetase ; Gene regulation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Acetate inducible genes of Aspergillus nidulans were cloned via differential hybridization to cDNA probes. Using transformation of mutant strains the genes were identified as facA (acetyl-Coenzyme A synthetase) and acuE (malate synthase). The levels of RNA encoded by these genes were shown to be acetate inducible and subject to carbon catabolite repression. Induction is abolished in a facB mutant and carbon catabolite repression is relieved in a creA mutant.
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  • 22
    ISSN: 1617-4623
    Keywords: Random cartridge mutagenesis ; Transformation ; Recombination ; Genetic mapping
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Photosynthetic mutants of the cyanobacterium Synechocystis PCC 6803 were produced by a random cartridge mutagenesis method leading to gene inactivation. This procedure relies on random ligation of an Escherichia coli kanamycin resistance (Kmr) gene to restriction fragments of genomic DNA from the host. Then recombination occurring during transformation promotes integration of the marker gene into the genome of the recipient cells. Several mutants impaired in photosynthesis were obtained by this procedure. All are partially or totally defective in photosystem II activity and some of them also harbour a functionally modified photosystem I. Restriction and recombination data showed that one mutant (AK1) is best explained as an insertion of the Kmr gene into an AvaII restriction site of the gene psbD-1. All other harbour a deletion, ranging from at least 1.15 kb (AK3) to more than 50 kb (AK9), which partly or fully overlaps the genes psbB and/or psbD-1, depending on the mutant. A genetic-physical map of the more than 60 kb region of the cyanobacterial genome harbouring the genes psbB, psbC and psbD-1 was constructed by combining published sequence data on these genes with the results of recombination and restriction mapping.
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  • 23
    ISSN: 1617-4623
    Keywords: Isopenicillin N synthase ; ips gene expression ; Transformation ; Penicillinum chrysogenum ; Penicillin biosynthesis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A gene (ips) encoding the isopenicillin N synthase of Penicillium chrysogenum AS-P-78 was cloned in a 3.9 kb SalI fragment using a probe corresponding to the aminoterminal end of the enzyme. The SalI fragment was trimmed down to a 1.3 kb NcoI-BglII fragment that contained an open reading frame of 996 nucleotides encoding a polypeptide of 331 amino acids with an Mr of 38012 dalton. The predicted polypeptide encoded by the ips gene of strain AS-P-78 contains a tyrosine at position 195, whereas the gene of the high penicillin producing strain 23X-80-269-37-2 shows an isoleucine at the same position. The ips gene is expressed in Escherichia coli minicells using the λ phage PL promoter. Some similar sequence motifs were found in the upstream region of the ips gene of P. chrysogenum when compared with the upstream sequences of the ips genes of Cephalosporium acremonium and Aspergillus nidulans. Primer extension studies indicated that the start of the mRNA coincides with a T in position-11 which is located in a conserved pyrimidine-rich sequence, near two CAAG boxes. Clones of P. chrysogenum Wis 54–1255 transformed with the ips gene showed a five-fold higher isopenicillin N synthase activity than the untransformed cultures.
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  • 24
    ISSN: 1615-6102
    Keywords: In vitro shoots ; Pisum sativum ; Meristematic cells ; Shoot apices ; Transformation ; Agrobacterium
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Different tissues in cultured pea shoots were inoculated withAgrobacterium tumefaciens wild types C 58 and ACH 5 andA. rhizogenes wild type 9402. The C 58 and 9402 bacteria induced the formation of tumours and hairy roots respectively while the ACH 5 was inactive. The younger the tissue the more rapidly it responded to the active bacteria. The shoot apex was the most reactive organ and developed into a tumour, theA. rhizogenes tumours subsequently giving rise to transformed hairy roots. Histological examination showed that transformed cells (including those within the apical dome) initially became highly vacuolate before dividing rapidly to form a tumour. These changes were accompanied by cell division in surrounding tissues.
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  • 25
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    Plant ecology 82 (1989), S. 1-12 
    ISSN: 1573-5052
    Keywords: Distance ; Hausdorf distance ; Levenshtein distance ; Ordered category ; Rank correlation ; Similarity ; String ; Transformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Cover-abundance estimates are commonly employed in phytosociological investigations to record the performance of species. Because the coded values are on an ordinal scale of measure, various authors have suggested that some transformation is necessary before such values can be used for classification and ordination. However, it is not clear that transformation is a sufficient treatment, and it would seem preferable to use ordinal data directly. In this paper we examine such direct use of partial rankings and show that several dissimilarity measures can be defined for this case without invoking any transformations. They include dissimilarity measures associated with various rank correlation measures and with distances between strings; all the measure are variant forms of Hausdorf's interset distance. Certain other kinds of data, such as those employing dominant and subdominant species and the dry-weight-rank estimation of biomass, are also on an ordinal scale and could be analysed using similar techniques. To illustrate the approach, a string dissimilarity measure is used to analyse a set of data from Slovakian grasslands which appear to reflect a simple gradient. The original data were recorded with 10 classes of performance and are analysed using hierarchical and nondeterministic, overlapping, classifications.
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  • 26
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    Plant ecology 81 (1989), S. 1-15 
    ISSN: 1573-5052
    Keywords: Cluster analysis ; Databank ; Ordination ; Resemblance ; Table sorting ; Transformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The development of numerical syntaxonomy during its first 20 yr is reviewed. The use of methods of numerical classification and ordination is the dominating feature of the development. National and local phytosociological data banks were established, large data sets handled and many important vegetation monographs were methodically based on multivariate data analysis. Particularly the development in Italy, the Netherlands, Czechoslovakia, and Sweden contributed to new theoretical elements of numerical syntaxonomy. Ordination became a common tool of searching for reticulate synsystematic relations between community types. The most popular ordination techniques have been Principal Components Analysis and Detrended Correspondence Analysis. Hierarchical agglomerative techniques of clustering still prevail in classification, although the divisive strategy of TWINSPAN has also become an effective tool for phytosociological clustering and table sorting. Extensive program packages, also for personal computers have now become standard equipment for many vegetation scientists.
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  • 27
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    Molecular genetics and genomics 219 (1989), S. 270-276 
    ISSN: 1617-4623
    Keywords: Transformation ; Homologous integration ; Instability ; DNA sequence replacement ; Podospora anserina
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We have developed in Podospora anserina a two-step procedure for DNA sequence replacement through transformation which might be applicable to other filamentous fungi. Targeting of transforming DNAs to their homologous locus is achieved provided a cosmid vector is used. Southern blot analysis of genomic DNAs from a set of transformants is presented. The data confirm that cosmids integrate into the chromosome through mostly homologous recombination which leads to a duplicated sequence separated by the vector. This event was found to be unstable in crosses. We show that this instability is due to the frequent excision of the vector together with the selective marker and one copy of the duplication, either the resident or foreign sequence. The two sequences can be distinguished because they exhibit restriction fragment length polymorphism. Therefore, Podospora anserina treats duplications occurring through transformation in a way differing from that exhibited by Neurospora crassa and Ascobolus immersus.
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  • 28
    ISSN: 1617-4623
    Keywords: Aspergillus ; Genetics ; Transformation ; trpC lacZ gene fusion ; Gene replacement
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Aspergillus niger tryptophan auxotrophic mutants have been isolated after UV irradiation of conidiospores. The mutants belong to two different complementation groups, trpA and trpB, which complement each other in heterokaryons. Neither of the mutations could be complemented with the cloned A. niger trpC gene. To obtain A. niger trpC mutants in a direct way, gene inactivation by cotransformation was performed. For this purpose an in-frame gene fusion between the A. niger trpC and Escherichia coli lacZ genes was constructed and shown to be functionally expressed after introduction into A. niger by cotransformation with the pyrA gene as selective marker. Among the β-galactosidase expressing cotransformants, obtained with either circular or linearized vectors, no trpC mutants were detected, even after enrichment. Such mutants, however, could be obtained by cotransformation of A. niger with specific fragments of the fusion gene. Biochemical analysis of the cotransformants indicated that in nearly all cases the fusion gene had replaced the wild-type trpC gene. Genetic analysis showed that the trpC mutation is not linked to any of the A. niger loci described so far. The trpC mutants can be complemented by the cloned A. niger trpC gene as well as by the A. nidulans trpC gene.
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  • 29
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    Molecular genetics and genomics 220 (1989), S. 140-146 
    ISSN: 1617-4623
    Keywords: Recombination ; Transformation ; Multigene family ; Molecular evolution ; Alcohol dehydrogenase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We have developed an experimental system to assay conversion and reciprocal exchange between tandem repeats in Drosophila melanogaster. In this system, the recombining markers map 0.76 kb apart within the Adh gene, and the length of the repeated unit is 4.75 kb. Our results provide a preliminary record of germline frequencies of gene conversion and unequal exchange between these markers. Conversions involving dispersed repeats were not observed, and may be less frequent. This work demonstrates that conversion takes place at an appreciable frequency between tandem repeats in metazoan germline. It confirms that gene conversion can mediate homogenization of reiterated sequences in higher eukaryotes.
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  • 30
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    Molecular genetics and genomics 219 (1989), S. 209-216 
    ISSN: 1617-4623
    Keywords: Agrobacterium tumefaciens ; Transformation ; Leaf disc infection ; Nicotiana tabacum ; TR promoter
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The physiological function in planta of T-DNA gene 6b was studied under various experimental conditions. For this purpose the coding region of gene 6b was cloned behind the 1′-promoter of the TR-DNA to enhance expression of the gene product in transformed plant cells. Expression of the recombinant gene in leaf discs of Nicotiana tabacum altered the capacity for shoot formation of the discs, induced by exogenous (i.e. BAP in the growth medium or agrobacterial trans-zeatin produced under control of gene tzs) or endogenous cytokinins (i.e. isopentenyladenosine produced under control of T-DNA gene 4). The data obtained indicate a reduction of cytokinin activity within the plant cells by the product of T-DNA gene 6b.
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  • 31
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    Molecular genetics and genomics 220 (1989), S. 65-68 
    ISSN: 1617-4623
    Keywords: Transformation ; Single-stranded DNA ; Agrobacterium ; Transient expression ; Extrachromosomal
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The transfer of the Agrobacterium T-DNA to plant cells involves the induction of the Ti plasmid virulence genes. This induction results in the generation of linear single-stranded (ss) copies of the T-DNA inside Agrobacterium and such molecules might be directly transferred to the plant cell. A central requirement of this ss transfer model is that the plant cell must generate a second strand and integrate the resulting double-stranded (ds) molecule into its genome. Here we report that incubating plant protoplasts with ss or ds DNA under conditions favouring DNA uptake results in transformation. The frequencies of transformation are similar and analysis of ss transformants suggests that the introduced DNA becomes double stranded and integrated. Analysis of transient expression from introduced ss DNA suggests that generation of the second strand is rapid and extrachromosomal.
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  • 32
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    Molecular genetics and genomics 218 (1989), S. 390-396 
    ISSN: 1617-4623
    Keywords: Sordaria macrospora ; Transformation ; Filamentous fungi ; Orotate phosphoribosyl transferase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We present here the first report of a transformation system developed for the filamentous fungus Sordaria macrospora. Protoplasts from a ura-5 strain were transformed using the cloned Sordaria gene at a frequency of 2×10-5 transformants per viable protoplast (10 per microgram of DNA). Transformation occurred by integration of the donor sequences in the chromosomes of the recipient strain. In 71 cases out of 74, integration occurred outside the ura5 locus; frequently several (two to four) copies were found at a unique integration site. Using the advantage of the spore colour phenotype of the ura5-1 marker, we have shown that the transformed phenotype is stable through mitosis and meiosis in all transformants analysed. No methylation of the duplicated sequences could be observed during meiotic divisions in the transformants.
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  • 33
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    Molecular genetics and genomics 215 (1989), S. 294-299 
    ISSN: 1617-4623
    Keywords: Upstream regulatory element ; Gene expression ; Z-DNA ; Transformation ; Nopaline synthase promoter
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Fine deletion mutants were generated in the upstream control region of the nopaline synthase (nos) promoter to define the position and role of upstream regulatory elements. The results indicated that the 8 bp sequence (CAGAAACC) at -106/-113 and its inverted repeat (GGTTTCTG) at -140/-147 are important for promoter function. The downstream element appears more important than the upstream element since deletion of the former reduced promoter activity more significantly than deletion of the latter. Deletion of the element alone, however, did not abolish promoter function, whereas, deletion of the 10 bp potential Z-DNA-forming (Z) element located between the repeat elements nullified promoter activity. Therefore, it appears that the Z element is an essential upstream regulator and the repeated elements are upstream modulators of the nos promoter. These elements are functionally distinct since alteration of stereospecificity or insertion of short oligonucleotides between the elements did not significantly influence promoter activity. These regulatory elements were unable to function from 200 bp upstream of the CCAAT-TATA box region.
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  • 34
    ISSN: 1573-6822
    Keywords: Carcinogen treatment ; Confluent cell culture ; Ethylacetate extracts ; S-phase cells ; Transformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract The metabolism of benzo[a]pyrene in randomly proliferating and confluent cultures of human skin fibroblast cells was compared with cell cultures in early S phase of the cell cycle after a G1 block. When each cell population was exposed to [G-3H]benzo[a]pyrene for 24 hours and the organic soluble metabolites in the extracellular medium and intracellular components were analyzed by HPLC, a quantitative increase in metabolism was observed in the confluent cell populations. The amount of organic soluble metabolites in the extracellular medium of the confluent dense cultures was 2.7 times the amount found in randomly proliferating cultures and 1.5 times that of the synchronized cultures. The trans-7,8- and 9,10 dihydrodiols and 3-hydroxy benzo[a]pyrene were the major metabolites formed. Small amounts of the sulphate conjugate, 9-hydroxy-benzo[a]pyrene and the tetrols were also detected. Cytoplasmic as well as nuclear extracts from the confluent cell cultures also contained higher amounts of metabolites compared to those from the randomly proliferating and S-phase cells. The levels of DNA modification by metabolically activated benzo[a]pyrene did not differ among the randomly proliferating, confluent and S-phase cells. However, the S-phase cells exhibited approximately 50-fold increase in the frequency of transformation compared to the randomly proliferating cells. Confluent cells were not transformed by benzo[a]pyrene. These data suggest that factors other than random modification of DNA by the carcinogen might have a significant role in the expression of a transformed phenotype and that metabolism and transformation are not directly related. Furthermore, confluent dense cultures with a heightened capability for metabolism of benzo[a]pyrene were more active in the detoxification of benzo[a]pyrene than in the production of the metabolites associated with cellular transformation.
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