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  • Wiley-Blackwell  (8,929)
  • Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
  • 1985-1989
  • 1980-1984  (8,966)
  • 1945-1949
  • 1930-1934
  • 1925-1929
  • 1982  (8,966)
Collection
Language
Years
  • 1985-1989
  • 1980-1984  (8,966)
  • 1945-1949
  • 1930-1934
  • 1925-1929
Year
  • 1
    Series available for loan
    Series available for loan
    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
    Associated volumes
    Call number: ZSP-201-82/41
    In: CRREL Report, 82-41
    Description / Table of Contents: Many of the important factors influencing the choice of appropriate aquifer test procedures are presented. The concepts of bias, accuracy and spatial variabil­ity are explained. The definitions of a number of aquifer parameters are devel­oped from basic principles demonstrating the underlying assumptions and limita­tions. The parameters considered are: piezometric head, hydraulic conductiv­ity/intrinsic permeability, flow direction, specific discharge magnitude, transmissivity, volumetric flow rate, total porosity, effective porosity, aver­age linear velocity, storage coefficient, specific yield, dispersion coefficient-aquifer dispersivity. For each parameter several techniques are described, evaluated and ranked in terms of perceived potential accuracy, simplicity and value to contaminant transport studies. It must be stressed, however, that the evaluations are based principally upon theoretical grounds, and not upon actual conduct of the described procedures.
    Type of Medium: Series available for loan
    Pages: iv, 111 Seiten , Illustrationen
    Series Statement: CRREL Report 82-41
    Language: English
    Note: CONTENTS Abstrac Preface Introduction Purpose Scope Concept of accuracy Test selection Definition of parameters Piezometric head Use of piezometers Hydraulic conductivity Flow direction Specific discharge magnitude Transmissivity Volumetric flow rate Porosity Average linear velocity Storage coefficient-specific yield Aquifer dispersivity Parameter estimation techniques Piezometric head Hydraulic conductivity Direction and magnitude of specific discharge vector Transmissivity Volumetric flow rate Total porosity Average linear velocity Storage coefficient Specific yield Effective porosity Aquifer dispersivity-dispersion coefficients Conclusions Literature cited
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  • 2
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    Series available for loan
    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
    Associated volumes
    Call number: ZSP-201-82/40
    In: CRREL Report, 82-40
    Description / Table of Contents: The use of explosives to break floating ice sheets is described, and test data are used to develop design curves that predict explosives effects as ice thickness, charge size, and charge depth vary. Application of the curves to practical problems is illustrated by numerical examples. The general features of underwater explosions are reviewed and related to ice blasting. Quasi-static plate theory is considered, and is judged to be inapplicable to explosive cratering of ice plates. The specific energy for optimized ice blasting is found to compare quite favorably with the specific energy of icebreaking ships. All available field data for ice blasting are tabulated in appendices, together with details of the re­gression analyses from which the design curves are generated.
    Type of Medium: Series available for loan
    Pages: iv, 68 Seiten , Illustrationen
    Series Statement: CRREL Report 82-40
    Language: English
    Note: CONTENTS Abstract Preface Introduction General behavior of underwater explosions Regression analysis for ice-blasting data General features of the regression curves Use of the regression curves as design curves for ice blasting Row charges and pattern charges Response of floating ice sheets to underwater explosions Specific energy and “powder factor” Summary and conclusions Literature cited Appendix A: Basic data on ice blasting Appendix B: Scaled input data Appendix C: Initial regression analysis using complete polynomial Appendix D: Regression analysis with two coefficients of the original poly­nomial deleted
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  • 3
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
    Associated volumes
    Call number: ZSP-201-82/42
    In: CRREL Report, 82-42
    Description / Table of Contents: A high-resolution impulse radar profiling system was evaluated for 1) detecting the existence of sea ice which coring has revealed to exist on the bottom of the Ross Ice Shelf at Site J-9, 2) detecting the preferred horizontal c-axis azi-muthal direction of the sea ice crystals, using the voltage amplitude of the radar reflection from the sea ice bottom, and 3) determining the direction of the currents under an Antarctic ice shelf. A field program was conducted consisting of a surface radar survey on the Ross Ice Shelf at Site J-9 and surface and airborne radar profiling on the McMurdo Ice Shelf. The CRREL impulse radar system, operating at a center frequency of either 80 MHz or 20 MHz, was unable to detect the shelf bottom at Site J-9, which drilling revealed to be 416 m below the snow surface. The radar system was used to profile the McMurdo Ice Shelf both from the snow surface and from the air; a shelf thickness of about 275 m was easily detected. Theoretical considerations indicate that the bulk conductivity of the ice shelf at Site J1-9 was higher than originally anticipated, and this limited the radar sounding depth to about 405 m when operating at a frequency of 20 MHz.
    Type of Medium: Series available for loan
    Pages: iv, 19 Seiten , Illustrationen
    Series Statement: CRREL Report 82-42
    Language: English
    Note: CONTENTS Abstract Introduction Profiling system Theoretical considerations Field program Discussion Literature cited
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  • 4
    Call number: ZSP-201-82/39
    In: CRREL Report, 82-39
    Description / Table of Contents: Observations of a 4.4-m-high brine step in the McMurdo Ice Shelf, Antarctica, show that it has migrated about 1.2 km in 4 years. The present brine wave is overriding an older brine-soaked layer. This migration is proof of the dynamic nature of the step, which is the leading edge of a brine wave that originated at the shelf edge after a major break-out of the McMurdo Ice Shelf. The inland boundary of brine penetration is characterized by a series of descending steps that are believed to represent terminal positions of separate intrusions of brine of similar origin. The inland boundary of brine percolation is probably controlled largely by the depth at which brine encounters the firn/ ice transition (43 m). However, this boundary is not fixed by permeability considerations alone, since measurable movement of brine is still occurring at the inland boundary. Freeze-fractionation of the seawater as it migrates throught the ice shelf preferentially precipitates virtually all sodium sulfate, and concomitant removal of water by freezing in the pore spaces of the infiltrated firm produces residual brines approximately six times more concentrated than the original seawater.
    Type of Medium: Series available for loan
    Pages: v, 35 Seiten , Illustrationen
    Series Statement: CRREL Report 82-39
    Language: English
    Note: CONTENTS Abstract Preface Introduction Objectives Analytical techniques Radio echo profiling Core drilling Results and discussion Brine infiltration survey Brine layer steps Brine infiltration characteristics Brine infiltration mechanisms at inland boundary Confirmation of brine depths by drilling Density and temperature profiles Ice shelf freeboard Brine upwelling Brine chemistry Conclusions Literature cited
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  • 5
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    Series available for loan
    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
    Associated volumes
    Call number: ZSP-201-82/38
    In: CRREL Report, 82-38
    Description / Table of Contents: Extreme cold causes heavy buildup of frost, ice and condensation on many windows. It also increases the incentive for improving the airtightness of windows against heat loss. Our study shows that tightening specifications for Alaskan windows to permit only 30% of the air leakage allowed by current American airtightness standards is economically attractive. We also recommend triple glazing in much of Alaska to avoid window icing in homes and barracks. We base our conclusions on a two-year field study of Alaskan military bases that included recording humidity and temperature data, observing moisture accumulation on windows and measuring airtightness with a fan pressurization device.
    Type of Medium: Series available for loan
    Pages: v, 26 Seiten , Illustrationen
    Series Statement: CRREL Report 82-38
    Language: English
    Note: Contents Abstract Preface Nomenclature Introduction Previous work in cold weather window performance Investigation Data acquisition and analysis Modeling the window thermal regime Moisture and ice observations Airtightness testing and analysis Annual heat loss from air leakage Results and conclusions Moisture on windows Airtightness Airtightness economics Recommendations for windows in extreme cold Airtightness Multiple glazing Literature cited Appendix A: Moisture levels and airtightness Appendix B: Dewpoint data Appendix C: Sample observations of icing
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  • 6
    Call number: ZSP-201-82/37
    In: CRREL Report, 82-37
    Description / Table of Contents: This report presents a Landsat-derived land cover map of the northwest portion of the Arctic National Wildlife Refuge, Alaska. The report is divided into two parts. The first is devoted to the land cover map with detailed descriptions of the mapping methods and legend. The second part is a description of the study area. The classification system used for the maps is an improvement over existing methods of describing tundra vegetation. It is a comprehensive method of nomenclature that consistently applies the same criteria for all vegetation units. It is applicable for large- and small-scale mapping and is suitable for describing vegetation complexes, which are common in the patterned-ground terrain of the Alaskan Arctic. The system is applicable to Landsat-derived land cover classifications. The description of the study area focuses on five primary terrain types: flat thaw-lake plains, hilly coastal plains, foothills, mountainous terrain, and river flood plains. Topography, landforms, soils and vegetation are described for each terrain type. The report also contains area summaries for the Landsat-derived map categories. The area summaries are generated for the five terrain types and for the 89 townships within the study areas. Two land cover maps at 1:250,000 are included.
    Type of Medium: Series available for loan
    Pages: 68 Seiten , Illustrationen, 2 Karten
    Series Statement: CRREL Report 82-37
    Language: English
    Note: CONTENTS Abstract Preface Foreword Introduction A land cover map of the ANWR study area Legend development Mapping method Results Discussion Description of the ANWR study area General description Description of specific terrain types Conclusions Literature cited Appendix A: Descriptions of Landsat land cover categories for ANWR Appendix B: Area summaries Appendix C: Aproximate equivalent units in several systems of land cover, wetland and vegetation classifications used in northern Alaska Appendix D: Soil taxonomy Appendix E: Summary of principal Landsat land cover categories within the terrain types of the ANWR study area
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  • 7
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
    Associated volumes
    Call number: ZSP-201-82/36
    In: CRREL Report, 82-36
    Description / Table of Contents: Camp construction and drilling activities in 1950 at the East Oumalik drill site in northern Alaska caused extensive degradation of ice-rich, perennially frozen silt and irreversible modification of the upland terrain. In a study of the long-term degradational effects at this site, the near-surface geology was defined by drilling and coring 76 holes (maximum depth of 34 m) in disturbed and undisturbed areas and by laboratory analyses of these cores. Terrain disturbances, including bulldozed roads and excavations, camp structures and off-road vehicle trails, were found to have severely disrupted the site's thermal regime. This led to a thickening of the active layer, melting of the ground ice, thaw subsidence and thaw consolidation of the sediments. Slumps, sediment gravity flows and collapse of materials on slopes bounding thaw depressions expanded the degradation laterally, with thermal and hydraulic erosion removing materials as the depressions widened and deepened with time. Degradational processes became less active after thawed sediments thickened sufficiently to slow the increase in the depth of thaw and permit slope stabilization. The site's terrain is now irregular and hummocky with numerous depressions. Seasonal thaw depths are deeper in disturbed areas than in undisturbed areas and reflect the new moisture conditions and morphology. The severity of disturbance is much greater at East Oumalik than at another old drill site, Fish Creek. The difference results primarily from differences in the physical properties of the sediments, including the quantity and distribution of ground ice.
    Type of Medium: Series available for loan
    Pages: 42 Seiten , Illustrationen
    Series Statement: CRREL Report 82-36
    Language: English
    Note: CONTENTS Abstract Preface Summary Introduction Methodology Geologic setting Camp construction and occupation Types of disturbance Degradational processes and the effective area of impact Areal effects of disturbance Topography Groundwater, surface water and drainage Sediment properties and near-surface stratigraphy Surficial processes Depth of thaw Comparison to Fish Creek Discussion and conclusions Literature cited
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  • 8
    Call number: ZSP-201-82/19
    In: CRREL Report, 82-19
    Description / Table of Contents: Under proper design and management, a forest ecosystem in the central United States should renovate municipal wastewater as long or longer than conventional agricultural systems, especially when design limitations are hydraulic loading rate, heavy metals, P and N. Forest systems require smaller buffer zones than agricultural systems and lower sprinkler pressures. Immature forests are better wastewater renovators than mature forests.
    Type of Medium: Series available for loan
    Pages: iv, 22 Seiten , Illustrationen
    Series Statement: CRREL Report 82-19
    Language: English
    Note: CONTENTS Abstract Preface Introduction Forest systems design Pretreatment Distribution systems Public health considerations Buffer zone requirements Toxic effects Public access Hydraulic loading Nutrient uptake and loading Introduction Nitrogen Phosphorus Trace metals Design considerations Hydraulic loading rates Nitrogen loading rates Forest management options Reforestation Existing forest ecosystems Short term rotation plantations Potential long term effects on forest ecosystems Longevity of forest systems Consequences of overloading Soil chemical, physical and hydrologic properties Productivity Summary Literature cited
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  • 9
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
    Associated volumes
    Call number: ZSP-201-82/18
    In: CRREL Report, 82-18
    Description / Table of Contents: Snow and ice control on highways has come to rely heavily on the use of sodium chloride to maintain a trafficable surface for unimpeded movement. Empirical approaches have led to a wide range of application rates, some clearly excessive, but justified on the ground of safety and expediency. The combination of environmental degradation from the huge quantities of salt entering the environment, along with the increased cost of salt itself and the cost of its application have spurred the search for more precise knowledge of the proper amount of salt to apply to a pavement, considering a range of environmental, traffic and chemical parameters. Since controlled tests in the field are extremely difficult to make, a circular test track of three test pavements, dense-graded asphaltic concrete (DGA), open-graded asphaltic concrete (DGA) and portland cement concrete (PCC), was constructed in a coldroom. Natural snow and ice were applied to the pavements and an instrumented slipping wheel was driven over the surfaces to generate frictional forces. These forces were measured and then used to evaluate the response to salt application with time for three test temperatures. OGA had the lowest friction values at a temperature near the freezing point, but higher initial values or more rapidly increasing values than DGA and PCC following salt application at the two lower temperatures. Optimum application rate of salt on PCC and DGA lies between 100 and 300 lb/lane mile (LM), and a higher rate resulted in slight or no improvement in friction. DGA showed anomalous results: lower friction for 300 Ib/LM and higher friction for both 100 and 500 Ib/LM.
    Type of Medium: Series available for loan
    Pages: vi, 55 Seiten , Illustrationen
    Series Statement: CRREL Report 82-18
    Language: English
    Note: CONTENTS Abstract Preface Introduction Objectives Background Approach Influencing factors Field factors Laboratory Laboratory trafficking tests Force measurement and coefficient of friction Test tire slip Surface friction gauge Test procedure British portable tester Experimental results Conclusions Recommendations Literature cited Appendix A. Test pavements Appendix B. Pennsylvania State University field study Appendix C. Rochester Institute of Technology field study
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  • 10
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
    Associated volumes
    Call number: ZSP-201-82/17
    In: CRREL Report, 82-17
    Description / Table of Contents: Seismic P and SH wave refraction experiments at the NATO RSG-11 test site in Munster Nord, Federal Republic of Germany, reveal the presence of a nearly horizontal, three-layer velocity structure. The upper layer, composed of un­consolidated glacial till, is 1 m thick and has P (compressional) and SH (shear-horizontal) wave velocities of 240 and 165 m s-1. The second layer, made up of similar, more compacted material, is 9.5 m thick, with a P wave velocity of 470 m s-1 and an SH wave velocity of 275 m s-1. The third layer, interpreted as the groundwater table, is located at a depth of 10.5 m and has a P wave velocity of 1590 m s-1. The SH wave velocity of this layer is controlled by the matrix material and is the same as that of the second layer. A single, unreversed observation indicated a fourth layer at a depth of about 20 m, but the existence of this layer remains unconfirmed. The observed fundamental mode Love wave dispersion is in agreement with the theoretical dispersion predicted by the refraction velocities. Computed partial derivatives of phase velocity with respect to shear wave velocity show, for the frequencies observed, that the dispersion confirms the thicknesses and velocities of the two upper layers and is not affected by the deeper structure.
    Type of Medium: Series available for loan
    Pages: iv, 33 Seiten , Illustrationen
    Series Statement: CRREL Report 82-17
    Language: English
    Note: CONTENTS Abstract Preface Introduction Refraction experiments Procedure Equipment Results P waves Low velocity zone SH waves Surface wave experiments Summary and discussion Literature cited Appendix A: P wave refraction data Appendix B: SH wave refraction data. Appendix C: Surface wave dispersion calculations
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  • 11
    Call number: ZSP-201-82/15
    In: CRREL Report, 82-15
    Description / Table of Contents: An experiment is described that demonstrates the balance between the ice and the unfrozen water in a frozen soil as water is removed. Nuclear magnetic resonance (NMR) is used to monitor the unfrozen water content as the soil is dehydrated by a molecular sieve material. Our results show that the unfrozen water content of a Morin clay soil remains constant until the total water content has been reduced to the point where no ice remains in the system. Once the ice is depleted, the unfrozen water content determined by NMR corresponds to the total water content of the soil determined by the weight of water removed by the molecular sieve material. Thus the validity of utilizing NMR in determining unfrozen water contents vs temperature is established.
    Type of Medium: Series available for loan
    Pages: 8 Seiten , Illustrationen
    Series Statement: CRREL Report 82-15
    Language: English
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  • 12
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
    Associated volumes
    Call number: ZSP-201-82/16
    In: CRREL Report, 82-16
    Description / Table of Contents: Abstract: A dynamic-thermodynamic sea ice model which employs a viscous-plastic constitutive law has been applied to the East Greenland area. The model is run on a 40-km spatial scale at 1/4-day time steps for a 60-day period with forcing data beginning on 1 October 1979. Results tend to verify that the model predicts reasonable thicknesses and velocities within the ice margin. Thermodynamic ice growth produces excessive ice extent, however, probably due to inadequate parameterization of oceanic heat flux. Ice velocities near the free ice edge are also not well simulated, and preliminary investigations attribute this to an improper wind field in this area. A simulation which neglects ice strength, effectively damping ice interaction with itself and allowing no resistance to deformation, produces excessive ice drift toward the coast and results in unrealistic nearshore thicknesses. A dynamics-only simulation produced reasonable results, including a more realistic ice extent, but the need for proper thermodynamics is also apparent. Other simulations verify that ice import from the Arctic Basin, and ice transport due to winds and currents, were also important components in the model studies.
    Type of Medium: Series available for loan
    Pages: v, 40 Seiten , Illustrationen , 29 cm
    Series Statement: CRREL Report 82-16
    Language: English
    Note: CONTENTS Abstract Preface Introduction Model description and application Results and discussion Wind and current fields Standard simulation Thermodynamic simulation Zero ice strength Zero ice import Zero currents Modified currents Zero winds Dynamics simulation Summary and concluding remarks Literature cite
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  • 13
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
    Associated volumes
    Call number: ZSP-201-82/10
    In: CRREL Report, 82-10
    Description / Table of Contents: Dielectric measurements have been performed on silt and sand samples from permafrost areas using Time Domain Reflectometry. The sample temperatures were varied from +25 °C to -25 °C, and volumetric water content was varied between oven-dry and 0.55 gH2O/cm3. The data were processed for frequencies between 0.1 and 5.0 GHz. The results show a constant K' and a low K' for frequencies up to 1 GHz. A frequency dependence seen on the data above 2 GHz is probably the result of unfrozen, adsorbed water. At moisture levels near saturation at all temperatures, these soils have excellent propagation characteristics for ground-probing radar operating below 0.3 GHz. Massive ice should be easily detectable in permafrost within a few degrees of 0 °C.
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    Pages: 7 Seiten , Illustrationen
    Series Statement: CRREL Report 82-10
    Language: English
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  • 14
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
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    Call number: ZSP-201-82/11
    In: CRREL Report, 82-11
    Description / Table of Contents: The purpose of this investigation was to provide data to be used in evaluating the effects of winter navigation on pro­cesses that cause bank erosion. The specific objectives were to document bank conditions and erosion sites along the rivers, to monitor and compare the amounts of winter and summer bank recession and change, and to estimate the amount of recession that occurred prior to winter navigation. Shoreline conditions and bank recession were documented during field surveys each spring and fall. Bank changes were evaluated by comparison to observations from a previous survey. Aerial photointerpretation was done to estimate the amount of bank recession that occurred prior to winter navigation. Three hundred forty-five miles of river shoreline were surveyed. Banks were eroding along 21.5 miles (6.2%). The common types of bank failures were soil falls (sloughing) and block sliding and slumping. The erosion along approxi­mately 15 miles (70%) of the 21.5 miles was occurring along reaches not bordering winter navigation channels.
    Type of Medium: Series available for loan
    Pages: v, 75 Seiten , Illustrationen
    Series Statement: CRREL Report 82-11
    Language: English
    Note: CONTENTS Abstract Preface Introduction Previous investigations Approach Shoreline conditions Bank changes Bank recession before winter navigation St. Marys River Bank changes Bank recession before winter navigation St. Clair River Bank changes Bank recession before winter navigation Detroit River Bank changes Bank recession before winter navigation St. Lawrence River Bank changes Historical bank recession Summary and conclusions Literature cited Appendix A: St. Marys River Appendix B: St. Clair River Appendix C: Detroit River Appendix D: St. Lawrence River
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  • 15
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
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    Call number: ZSP-201-82/7
    In: CRREL Report, 82-7
    In: Charged dislocation in ice, II.
    Description / Table of Contents: The contribution of electrically charged dislocation motion to dielectric relaxation was studied theoretically. Experimentally obtained data on charge density, dislocation density, and segment length and distribution described in Part I of this series were used to calculate dielectric relaxation spectra. The results indicate that the charged dislocation process can produce the observed audio frequency dielectric relaxation as well as the distribution of spectra.
    Type of Medium: Series available for loan
    Pages: iii, 15 Seiten , Illustrationen
    Series Statement: CRREL Report 82-7
    Language: English
    Note: CONTENTS Abstract Preface Introduction Theoretical development of dielectric relaxation due to charged dislocations Numerical calculations for distributed segment length Discussion Conclusions Literature cited Appendix A. Mosotti type catastrophe by charged dislocation processes
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  • 16
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
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    Call number: ZSP-201-82/8
    In: CRREL Report, 82-8
    Description / Table of Contents: A detailed analysis of methods for calculating the thermal conductivity of soils is presented, and trends in the predic­tions of these methods are compared. The influence of changes in the moisture content on the calculated thermal con­ductivity of a soil (at constant dry density) is shown, as is the sensitivity of this calculated value to changes in dry den­sity or in the soil solids’ thermal conductivity. The methods are evaluated to determine the extent of agreement of their predictions with measured values obtained on soils of known composition and properties. The deviations of the predicted values are determined for soils that are unfrozen or frozen, coarse or fine, unsaturated, saturated or dry. The applicability of each of the methods under various conditions is determined and recommendations are made as to the best method for each condition.
    Type of Medium: Series available for loan
    Pages: vi, 90 Seiten , Illustrationen
    Series Statement: CRREL Report 82-8
    Language: English
    Note: CONTENTS Abstract Preface Nomenclature Introduction Analysis of methods for calculating thermal conductivity Introduction Influence of moisture content on thermal conductivity Influence of dry density on thermal conductivity Influence of soil solids’ thermal conductivity Comparison of the various methods Evaluation of methods for calculating thermal conductivity Soils data used for evaluation Computer program Applicability of the methods Discussion and conclusions Applicability to unfrozen soils Applicability to frozen soils Applicability to saturated soils Effect of soil mineral composition Applicability to dry soils Summary of applicability of methods Literature cited Appendix A: Properties of some test soils Appendix B: Comparison of thermal conductivity values computed by the various methods and of their deviations from the values measured
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  • 17
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
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    Call number: ZSP-201-82/9
    In: CRREL Report, 82-9
    Description / Table of Contents: This study deals with the distribution of forces along the converging boundaries of the Port Huron, Michigan, region where unconsolidated ice in Lake Huron is held against wind and water stresses. An experimental basin was built to induce uniform shear stress on the model ice cover by flowing water beneath the ice. The boundary segments, which held the ice cover in the region, were instrumented to measure force in the normal and tangential directions. The distribution of normal forces along the boundary was compared with as distribution derived by using a theoretical model. An ice control structure (ICS) was installed in the basin and experiments were conducted to measure the forces on the ICS and the ice release through the opening in the ICS during simulated ship passages. The experimental results are presented in a nondimensional form. In addition, the force per unit length on the ICS and the area of ice released through its opening were estimated for the expected wind conditions at the Port Huron site.
    Type of Medium: Series available for loan
    Pages: v, 27 Seiten , Illustrationen
    Series Statement: CRREL Report 82-9
    Language: English
    Note: CONTENTS Abstract Preface List of symbols Introduction Theoretical models Case 1 Case 2 Case 3 Experimental program Experimental facility Scaling factors Experimental results Analysis of wind data for lower Lake Huron Summary and conclusions Release of ice through the opening of an ICS Ice forces on the ice control structure Ice forces on ice control structure from a large unconsolidated ice cover Literature cited Appendix A. Equation for the stress resultants and velocities of the ice cover Appendix B. Monthly summary of wind data at Port Huron
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  • 18
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
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    Call number: ZSP-201-82/33
    In: CRREL Report, 82-33
    Description / Table of Contents: Arctic sea ice is freckled with melt ponds during the ablation season; Antarctic sea ice has few, if any. On the basis of a simple surface heat budget, we investigate the meteorological conditions necessary for the onset of surface melting in an attempt to explain these observations. The low relative humidity associated with the relatively dry winds off the continent and an effective radiation parameter smaller than that characteristic of the Arctic are primarily responsible for the absence of melt features in the Antarctic. Together these require a surface-layer air temperature above 0 C before Antarctic sea ice can melt. A ratio of the bulk transfer coefficients C sub H/C sub E less than 1 also contributes to the dissimilarity in Arctic and Antarctic ablation seasons. The effects of wind speed and of the sea-ice roughness on the absolute values of C sub H and C sub E seem to moderate regional differences, but final assessment of this hypothesis awaits better data, especially from the Antarctic.
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    Pages: 16 Seiten , Illustrationen
    Series Statement: CRREL Report 82-33
    Language: English
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  • 19
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
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    Call number: ZSP-201-82/32
    In: CRREL Report, 82-32
    Description / Table of Contents: Low-frequency (10 Hz) volcanic earthquakes originate at a wide range of depths and occur before, during, and after magmatic eruptions. The characteristics of these earthquakes suggest that they are not typical tectonic events. Physically analogous processes occur in hydraulic fracturing of rock formations, low-frequency icequakes in temperate glaciers, and autoresonance in hydroelectric power stations. We propose that unsteady fluid flow in volcanic conduits is the common source mechanism of low-frequency volcanic earthquakes (tremor). The fluid dynamic source mechanism explains low-frequency earthquakes of arbitrary duration, magnitude, and depth of origin, as unsteady flow is independent of physical properties of the fluid and conduit. Fluid transients occur in both low-viscosity gases and high-viscosity liquids. A fluid transient analysis can be formulated as generally as is warranted by knowledge of the composition and physical properties of the fluid, material properties, geometry and roughness of the conduit, and boundary conditions. To demonstrate the analytical potential of the fluid dynamic theory, we consider a single-phase fluid, a melt of Mount Hood andeside at 1250 deg C, in which significant pressure and velocity variations occur only in the longitudinal direction.
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    Pages: 15 Seiten , Illustrationen
    Series Statement: CRREL Report 82-32
    Language: English
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  • 20
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
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    Call number: ZSP-201-82/14
    In: CRREL Report, 82-14
    Description / Table of Contents: A comparative study was made of design criteria and analytical methods for footings and pile foundations on perma­frost employed in U.S.S.R. Design Code SNiP II-18-76 (1977) and U.S. Army Cold Regions Research and Engineering Laboratory Special Report 80-34 developed in the early 1970's by the U.S. Army Corps of Engineers and published in 1980. The absence of adequate constitutive equations for frozen soils and of rigorous solutions of the boundary prob­lems has made it necessary to incorporate (explicitly or implicitly) various safety factors in the foundation analyses. From the review it is concluded that the principal difference between these practices is in the assessment and application of appropriate values of safety factors, which leads to a substantial discrepancy in the dimensions and cost of footings and pile foundations in permafrost.
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    Pages: iv, 20 Seiten , Illustrationen
    Series Statement: CRREL Report 82-14
    Language: English
    Note: CONTENTS Abstract Preface Introduction U.S.S.R. system of standards U.S.S.R. Design Code SNiP 11-18-76 (1977) subsoils and foundations on permafrost General regulations Classification of soils Basic regulations for foundation design Analysis of subsoils and foundations Design of foundations for special soil conditions, and appendices SR 80-34 (1980) design and construction of foundations in areas of deep seasonal frost and permafrost General information Foundation design Conclusions Literature cited
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  • 21
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    Call number: ZSP-201-82/13
    In: CRREL Report, 82-13
    Description / Table of Contents: Frost heave is analyzed for the common case in which some ice penetrates the soil. In this situation, heave is due to the accumulation of soil-free ice just within the frozen zone, behind a frozen fringe of finite thickness. Heat and mass transport within and across that fringe are crucial processes in the dynamics of heave. This analysis concentrates on activity within the fringe, also connecting that activity to heat and mass flows in the more frozen and unfrozen zones. Each component in a set of governing differential equations is developed from rational physics and thermodynamics, using previous experimental work. It is assumed that the soil ice grows through interconnected interstices; hence it constitutes and can move as a rigid body. When the assumption is translated into mathematical terms, it completes the governing equations. The model resulting from these considerations is a one-dimensional finite element computer program that solves the equations for arbitrary initial and boundary conditions. The model is used to simulate the heave history of a hypothetical soil column frozen unidirectionally and subjected to a surcharge. The results are gratifying in that they predict qualitatively the characteristics of numerous laboratory observations. Some questions about the completeness of the theory remain, and strict verification of the model awaits further experimentation and better parameter identification.
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    Pages: iii, 11 Seiten , Illustrationen
    Series Statement: CRREL Report 82-13
    Language: English
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  • 22
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    Call number: ZSP-201-82/12
    In: CRREL Report, 82-12
    Description / Table of Contents: From a high-quality set of velocity, temperature, and humidity profiles collected upwind and downwind of a step change in surface roughness, temperature, and moisture, we have calculated upwind and downwind values of the heat fluxes and friction velocity. The surface change is from smooth to rough; upwind, the sensible heat flux is upward and the latent heat flux is zero; downwind, the surface is well-watered so that the latent heat flux is upward while the sensible heat flux is downward. The downwind latent heat flux in this fetch-limited flow obeys NL=0.08 Rx 0.76 where NL is the latent heat Nusselt number and Rx is the fetch Reynolds number, a parameter for characterizing fetch-limited flows. Because this relation is virtually the same as one found to describe the sensible heat and condensate fluxes over arctic leads, we conclude that the Nusselt numbers nondimensionalizing scalar fluxes are the same for a given fetch Reynolds number when boundary conditions are similar.
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    Pages: vii, 18 Seiten , Illustrationen
    Series Statement: CRREL Report 82-12
    Language: English
    Note: CONTENTS Abstract Preface List of symbols Introduction Upwind: flux gradient method Downwind: integral method ResulIts Energy budget Latent heat flux Surface stress Downwind humidity profiles Discussion Conclusions Literature cited
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  • 23
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    Call number: ZSP-201-82/3
    In: CRREL Report, 82-3
    Description / Table of Contents: The conditions that lead to initial breakup of a solid ice on a river due to rapid water level variations are analyzed. The analysis is based on the theory of beams on an elastic foundation. First cracking is assumed to occur when the bending moment induced in the ice cover by the wave exceeds the flexural strength of the ice cover.
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    Pages: iv, 17 Seiten , Illustrationen
    Series Statement: CRREL Report 82-3
    Language: English
    Note: CONTENTS Abstract Preface Symbols Introduction Purpose of the study Stating the problem Fracturing of the ice cover due to the passage of surge waves Basic assumptions Derivation of the bending moments Determination of the wave characteristics Deflection of the ice Discussion and field observations Summary Literature cited
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  • 24
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    Call number: ZSP-201-82/6
    In: CRREL Report, 82-6
    Description / Table of Contents: The interpretation of continuous radar profiles requires an alternative geophysical means of obtaining ground dielectric information. Ground dielectric properties were measured using wide-angle reflection and refraction (WARR) soundings with a ground-probing radar set that transmits pulses f a few nanoseconds duration. The investigations, carried out over sandy gravel in interior Alaska, provided dielectric data to about a 5-m depth. The WARR soundings were displayed as individual traces allowing interference between separate events and dispersion to be observed, and the soundings were compared with continuous radar and resistivity profiles conducted concurrently to extract the maximum amount of dielectric information. The dielectric constants, derived mainly from the direct ground waves propagating along the surface, ranged from 2.9 to 7.4. Dielectric values interpreted for one site predicted the possibility of a refracted event which may have occurred during one of the soundings.
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    Pages: iii, 11 Seiten , Illustrationen
    Series Statement: CRREL Report 82-6
    Language: English
    Note: CONTENTS Abstract Preface Introduction Theory of ground wave propagation from a horizontal electric dipole Equipment and methods Results Site 1 Site 2 Site 3 Summary and concluding remarks Literature cited
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  • 25
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    Call number: ZSP-201-82/5
    In: CRREL Report, 82-5
    Description / Table of Contents: The problem of simultaneous heat and mass transfer in a homogeneous snow layer, with one side kept at its initial temperature and the other side with a step temperature increase, was solved for the case of constant through-flow conditions. An experimentally determined effective thermal conductivity function, i.e. Ke = 0.0014 + 0.58 G (where G is dry mass flow rate of air in g/sq cm-s), was employed in the solution. The computed nondimensional temperature distribution agreed quite well with experimental data taken under pseudo-steady state conditions with the exception of the temperature for the lowest flow rate used in the experiment. The pronounced nonlinearity of the temperature distribution was found to be a strong function of the flow rate. For sinusoidal variation of atmospheric pressure, the responding flow in the snow medium was also found to be sinusoidal. In conjunction with the diurnal temperature change, this variation facilitated the process of repeated sublimation and condensation in alternate directions and thereby produced a surface layer of approximately constant snow density.
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    Pages: v, 10 Seiten , Illustrationen
    Series Statement: CRREL Report 82-5
    Language: English
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  • 26
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    Call number: ZSP-201-82/34
    In: CRREL Report, 82-34
    Description / Table of Contents: The ice discharge through an opening in an ice control structure was documented to be a function of the floe size, ice type, ice floe conditions and vessel direction. The model data for the average ice discharge per vessel transit scaled to prototype values compared favorably with data taken at the St. Marys River ice control structure (ICS). The model results of the force measurements were also consistent with data taken at the St. Marys ICS. The dynamic loading conditions were independent of vessel direction. The dynamic loading to the structure using 3 types of ice (plastic, natural and urea-doped) showed a considerable difference in their means and standard deviations. The urea-doped ice was evaluated for dynamic loading conditions, and reasonable peak values of 3 to 5 times the mean load at each measuring position were recorded, independent of vessel direction. It appears that synthetic random ice floes may be used in model studies where ice discharge through an opening in a structure needs to be documented. This study shows the synthetic random ice floe discharge to fall reasonably within the values obtained for natural ice discharge for both rafted and non-rafted ice fields above the ICS. However, the question of whether synthetic ice can be used for analyzing force distributions and dynamic force loading criteria cannot be fully answered at this time because the load distributions of the synthetic and natural floes appear to differ.
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    Pages: 68 Seiten , Illustrationen
    Series Statement: CRREL Report 82-34
    Language: English
    Note: CONTENTS Abstract Preface Introduction Scope of work Ice discharge from Lake Huron into St. Clair River Water velocity profiles at Port Huron Ice conditions Physical model Basis for selection Description Instrumentation Model ice control structure Open water calibration Open water tests Experimental procedures and techniques Ice cover calibration Ice control structure orientation Analysis of ice discharge due to ship transits Natural ice Synthetic ice Forces on the ice control structure Static measurements Dynamic force measurements Potential additional shear stresses Anticipated ice conditions with ICS Conclusions Literature cited Appendix A. Application of model results Appendix B. Suggested additional studies Appendix C. Derivation of ice discharge
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  • 27
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    Call number: ZSP-201-82/43
    In: CRREL Report, 82-43
    Description / Table of Contents: The radar signatures of ice wedges and wedge-like structures have been investigated for a variety of soil conditions. The radar used for this study emitted short sinusoidal pulses of about 10-ns duration with an approximate center frequency of 150 MHz. Most of the ice wedges existed at depths of about 1 m in a variety of silty and sandy soils with both frozen and thawed active layers. The position of the wedges was usually identified from corresponding surface features. An artificial ice wedge in coarse-grained alluvium was also profiled as well as wedge-like structures of fine silt in a coarse-grained glacial outwash. All wedges and wedge-like structures produced a hyperbolic reflection profile except when an active layer of thawed, saturated silt was present which eliminated returns from the wedges. The peaks of the hyper-bolas were sometimes masked by reflections from the permafrost table or other material interfaces, and multiple hyperbolas occurred at some sites. The dielectric constant of the host medium was often calculated from the linear portions of the hyperbolas and the results were verified by laboratory time domain reflectometry measurements per-formed on field samples. In some cases, hyperbolic profiles originated at several meters depth suggesting that deep ice wedges could be detected in areas of cold permafrost.
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    Pages: iv, 19 Seiten , Illustrationen
    Series Statement: CRREL Report 82-43
    Language: English
    Note: CONTENTS Abstract Preface Introduction Background Objectives and procedures Equipment used Radar TDR Definitions Massive ice Results Artificial wedge: Norwich, Vermont Ice wedges in sand: Fish Creek, Alaska Ice wedges: Prudhoe Bay, Alaska Ice wedges under thawed fine-grained soils: North Slope, Alaska Wedge-like soil structures: Ft. Greely, Alaska TDR measurements Summary and concluding remarks Literature cited Appendix A: Brief discussion of dispersion
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  • 28
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    Call number: ZSP-201-82/24
    In: CRREL Report, 82-24
    Description / Table of Contents: Velocity data derived from petroleum industry seismic records from Harrison Bay show that high-velocity material ( or = 2 km/s) interpreted to be ice-bonded permafrost is common. In the eastern part of the bay, the depth to high velocity material increases and velocity decreases in an orderly manner with increasing distance from shore until the layer is no longer apparent. The western part of the bay is less orderly, possibly reflecting a different geological and thermal history. This western part may be an inundated section of the low coastal plain characterized by the region north of Teshekpuk Lake, and could have contained deep thaw lakes, creating low velocity zones. Along some seismic lines, the high-velocity material extends approximately 25 km offshore. Two anomalies have been found which could be associated with rapidly degrading permafrost. One is strong attenuation, which was interpreted as an indication of gas in the shallow deposits. The other is the presence of considerable seismic noise, including identifiable small seismic events. The origin of this noise has not been positively established, and it is proposed that it may indicate that some movement is occurring in the sediments due to thaw.
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    Pages: 65 Seiten , Illustrationen
    Series Statement: CRREL Report 82-24
    Language: English
    Note: CONTENTS Abstract Preface Introduction Methods Reading records Refractions Reflections Rayleigh waves Spatial resolution Anomalies Results and discussion Seismic velocity distribution Attenuation Low-level natural seismicity Summary Literature cited Appendix A: Error estimates Appendix B: Velocity profiles Appendix C: Seismic cross sections
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  • 29
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    Call number: ZSP-201-82/23
    In: CRREL Report, 82-23
    Description / Table of Contents: A direct filtration, water treatment pilot plant was operated on the Kenai River at Soldotna, Alaska, during the summer of 1980. The purpose of the pilot plant operations was to determine the feasibility of the direct filtration process for removal of glacial silt. The major criterion used to determine feasibility was production of water containing less than 1.0 NTU of turbidity. For the range of raw water turbidities encountered (22-34 NTU), the pilot plant testing indicated that direct filtration was feasible and could be considered as an alternative to conventional waiter treatment plants containing sedimentation tanks.
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    Pages: 26 Seiten , Illustrationen
    Series Statement: CRREL Report 82-23
    Language: English
    Note: CONTENTS Abstract Preface Conversion factors: U.S. customary to metric Introduction Glacial characteristics Water treatment Materials and methods Experimental design Pilot plant intake Hydrocyclone Chemical addition system Flocculation system Filtration system Pilot plant operations Coagulant chemical preparations Flow measurement Sampling Results and discussion Kenai River w ater quality Evaluation of pilot plant testing Performance of pilot plant elements Physical and chem ical variables Conclusions Recommendations Literature cited
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  • 30
    Call number: ZSP-201-82/26
    In: CRREL Report, 82-26
    Description / Table of Contents: The Caribou-Poker Creeks Research Watershed is a small (101.5-sq km) drainage basin located 48 km northwest of Fairbanks, Alaska. Elevations within the watershed range from 210 to 826 m, and approximately 28% of its area is underlain by permafrost. Climatic differences between the watershed and Fairbanks are primarily due to the higher elevation of the watershed. Generally the watershed climatic sites are warmer in winter and cooler in summer than Fairbanks. Within the watershed the greatest temperature contrasts exist in winter, when the valley-bottom sites are beneath the regional air temperature inversion, and the higher sites are above it. From May through September the total precipitation averages 270 mm, 1.47 times that received at Fairbanks. The annual precipitation is about 1.7 times that of Fairbanks. The historical precipitation record at Fairbanks indicates that summer precipitation was below the long-term normal in eight of the eleven years of watershed measurements (1969-1980); no climatic extremes occurred during this period. An analysis of annual streamflow data showed an inconsistency of baseflow recessions from year to year. The runoff-rainfall ratio for individual summer storms averaged 0.35 for Caribou Creek. Comparisons of spot discharge measurements of predominantly permafrost and non-permafrost subwatersheds showed that permafrost-dominated watersheds have a much flashier response to precipitation than non-permafrost watersheds. A comparison of the annual flow distribution of the watershed indicated that Caribou Creek has lower summer and higher winter discharges per unit area than the Chena or Salcha Rivers.
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    Pages: 42 Seiten , Illustrationen
    Series Statement: CRREL Report 82-26
    Language: English
    Note: CONTENTS Abstract Preface Introduction Setting Geology and soils Vegetation Climate Air temperature Precipitation Hydrology Annual and monthly runoff Individual storms Baseflow recessions Spatial flow variability Temporal flow variability Summary and conclusions Literature cited Appendix A: Station histories
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  • 31
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    Hanover, NH : U.S. Army Cold Regions Research and Engineering Laboratory
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    Call number: ZSP-201-82/27
    In: CRREL Report, 82-27
    Description / Table of Contents: Recommendations for economical thicknesses for building insulation result from a study of fuel and construction costs of 12 military installations in Alaska. A comparison between the insulation thickness that a building owner might choose today and what he might choose in 20 years indicates a trend for much thicker insulation in the future. An analysis of how much more expensive a building built today with the thickness that would be appropriate 20 years hence indicates only a small penalty in life-cycle costs for the additional insulation. Therefore, a minimum of R-32 walls and R-62 attics is recommended for most of Alaska.
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    Pages: 54 Seiten , Illustrationen
    Series Statement: CRREL Report 82-27
    Language: English
    Note: CONTENTS Abstract Preface Conversion factors Summary Introduction Determining economic thicknesses for insulation Background Analysis method for new construction Analysis method for reinsulating existing construction Sensitivity and longevity of the results Sensitivity Longevity Recommendations Saving money vs. saving energy Energy economics conservation Building energy performance standards Conclusion Literature cited Appendix A: Heating system costs Appendix B: Present worth factors Appendix C: Base case and incremental thermal properties Appendix D: LCC comparison graphs for wall and roof systems Appendix E: Cost penalties for energy conservatism Appendix F: Graphic aid for figuring energy savings thermal improvements
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  • 32
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    Call number: ZSP-201-82/30
    In: CRREL Report, 82-30
    Description / Table of Contents: Equations are developed that can be used to determine the amount of gas present in sea ice from measurements of the bulk ice density, salinity and temperature in the temperature range o f-2 to -30°C. Conversely these relationships can be used to give the density of sea ice as a function of its temperature and salinity, considering both the presence of gas and of solid salts in the ice. Equations are also given that allow the calculation of the gas and brine volumes in the ice at temperatures other than that at which the bulk density was determined.
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    Pages: 13 Seiten , Illustrationen
    Series Statement: CRREL Report 82-30
    Language: English
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  • 33
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    Call number: ZSP-201-82/29
    In: CRREL Report, 82-29
    Description / Table of Contents: Ice grains in a snow cover with a low temperature gradient assume a well-rounded equilibrium form. However, at temperature gradients of 0.1 to 0.2 C/cm (depending somewhat on temperature and snow density), the rounded grains recrystallize into a faceted kinetic growth form. The large temperature gradient must play a decisive role in moving the vapor fast enough to sustain the rapid growth rate associated with the kinetic growth form. Once the large temperature gradient is removed, the grains recrystallize back to the equilibrium form. the recrystallization occurs in either direction without a change in bulk density. The growth of faceted crystals begins at the warmer base of the snow cover where the excess vapor pressure is largest. A transition between the overlying rounded grains moves upward in time. Faceted crystals also grow just below crusts of reduced permeability, where the increased vapor accumulation can sustain the excess vapor pressure neded for kinetic growth. The heat and vapor flows are described using a model based on thermodynamic equilibrium. The temperature distribution is shown to be quasi-linear at steady state in homogeneous snow. The recrystallization of the snow is modeled using the rounded grains as sources and the faceted grains as sinks. In the future this model should be extended to account for different temperatures among the sources and sinks.
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    Pages: 27 Seiten , Illustrationen
    Series Statement: CRREL Report 82-29
    Language: English
    Note: Contents: Abstract Preface Introduction Vapor flow Temperature profile Crystal growth rates Equilibirum versus kinetic growth forms of snow crystals Discussion Summary Literature cited
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  • 34
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    Call number: ZSP-201-82/31
    In: CRREL Report, 82-31
    Description / Table of Contents: Information on sea ice conditions in the Bering Strait and the icefoot formation around Fairway Rock, located in the strait, is presented. Cross-sectional profiles of Fairway Rock and the relief of the icefoot are given along with theoretical analyses of the possible forces active during icefoot formation. It is shown that the ice cover most likely fails in flexure as opposed to crushing or buckling, as the former requires less force. Field observations reveal that the Fairway Rock icefoot is massive, with ridges up to 15 m high, a seaward face only 20 degrees from vertical, and interior ridge slopes averaging 33 degrees. The icefoot is believed to be grounded and its width ranges from less than 10 to over 100 m.
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    Pages: 44 Seiten , Illustrationen
    Series Statement: CRREL Report 82-31
    Language: English
    Note: CONTENTS Abstract Preface Introduction Bering Strait Field reconnaissance Estimation of ice forces on Fairway Rock 1. Creep deformation 2. Crushing failure 3. Flexural failure 4. Forces required to form floating or grounded pressure ridges along therock or to pile ice on the beaches 5. Buckling failure Driving forces Angle of internal friction of sea ice Summary Literature cited Appendix A: April 1982 field observations at Fairway Rock
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  • 35
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    Call number: ZSP-201-82/21
    In: CRREL Report, 82-21
    Description / Table of Contents: The acoustic emission response from fine-grained polycrystalline ice subjected to constant compressive loads was examined. A number of tests were conducted with the nominal stress ranging from 0.8 to 3.67 MPa at a temperature of -5 C. The acoustic emission response was recorded and the data are presented with respect to time and strain. The source of acoustic emissions in ice is considered in terms of the formation of both microfractures and visible fractures that develop without catastrophic failure of the ice. A model to describe the acoustic emission response is developed.
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    Pages: iv, 15 Seiten , Illustrationen
    Series Statement: CRREL Report 82-21
    Language: English
    Note: CONTENTS Abstract Preface Introduction Background Experimental procedures Ice specimens Mechanical test equipment Acoustic emission equipment Data recording Acoustic emission sources in ice Acoustic events and visible fracturing Source mechanisms Tests on ice single crystals General acoustic emission response Analysis of data Transient response Steady-state response Amplitude distribution Combined transient and steady-state response in the time domain Discussion Summary Literature cited
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  • 36
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    Call number: ZSP-201-82/1
    In: CRREL Report, 82-1
    Description / Table of Contents: On 27 March 1964 a major earthquake struck Southern Alaska. The city of Anchorage, which contained a large part of Alaska's population, suffered loss of life and destruction of property. The time of the day, the season, and ground conditions were such that loss of life and property was minimized. The frozen ground and the ice on fresh waster bodies responded to the earthquake shocks in a seldom-observable pattern, which was noted and recorded. Changes of sea level and slides into the sea were responsible for waterfront destruction. It is concluded that the main factor that limited structural damage was the frozen state of the ground.
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    Pages: iv, 26 Seiten , Illustrationen
    Series Statement: CRREL Report 82-1
    Language: English
    Note: CONTENTS Abstract Preface Abstract of events Earthquakes and frozen ground The response of freshwater ice sheets to earthquake shock The earthquake disturbance in glaciated mountains Disturbed wildlife Tidal waves Summary Literature cited
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  • 37
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    Call number: ZSP-201-82/4
    In: CRREL Report, 82-4
    Description / Table of Contents: Several proposed methods for treating the momentum flux between drifting sea ice and the underlying ocean are interpreted in terms of simple planetary-boundary-layer (PBL) turbulence theory. The classical two-layer approach, in which the solution for a thin surface layer is matched to an Ekman solution for the outer layer, is used to derive several forms of the drag law. These forms range from linear (where stress is proportional to relative speed), through quadratic (where stress is proportional to relative speed squared), to a Rossby-similarity law like that used to express frictional drag on geostrophic wind in the atmosphere. Only formulations which conform with Rossby-similarity scaling are consistent with free-drift data from the 1975 AIDJEX drift station experiment.
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    Pages: iv, 17 Seiten , Illustrationen
    Series Statement: CRREL Report 82-4
    Language: English
    Note: CONTENTS Abstract Preface Background Hierarchy of drag laws and simple models The momentum equation for the planetary boundary layer Linear eddy viscosity - the constant stress layer Two-layer eddy viscosity PBL scaling A dimensionless two-layer system A dimensionless two-layer system with modified stress Evaluating the drag laws Rossby similarity parameters and buoyancy effects Discussion Literature cited
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  • 38
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 21 (1982), S. 17-24 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Computer simulation shows that the time required to attain near sedimentation equilbrium is dramatically reduced by a two-step initial loading in which a macromolecular solution at low or zero concentration is layered above one at a higher concentration. To achieve the minimum time requires a good estimate of the molecular weight, but at least a 50% reduction in time can be achieved if the molecular weight of the macromolecule is known only within a factor of 2. Numerical solutions to the differential equation of the ultracentrifuge are calculated using the finite element method. An efficient Gaussian elimination algorithm can be used to minimize calculation time and computer storage requirements.
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    Electronic Resource
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    New York : Wiley-Blackwell
    Biopolymers 21 (1982), S. 79-88 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The aldehydes present in acid-soluble type I collagen react with pyrenebutyrylhydrazine to form various types of complexes under different reaction conditions. These complexes exhibit one or more of three different pyrene fluorescence bands: monomer, excimer, and aggregate fluorescence. Collagen, whose aldehydes have been reduced with NaBH4, does not react with this fluorescent hydrazine, confirming that the hydrazine reacts specifically with aldehyde groups to form hydrazones. The absence of a reaction with pepsin-treated collagen also shows that the fluorescent labels are primarily in the nonhelical terminal telopeptides. Upon dialysis, the pyrene label bound to a saturated aldehyde in an α-chain is lost; whereas that bound to an unsaturated aldehyde remains on the protein. The pyrene monomer fluorescence in the β-chain of old collagen is stronger than that of young collagen. The formation of the pyrene excimer fluorescence implies the proximity of two pyrene molecules, probably attached to two adjacent aldehydes. Upon changing from acidic to neutral pH, both excimer and aggregate fluorescence bands disappear within a few seconds, revealing a very rapid alteration at the telopeptides.
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  • 40
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 21 (1982), S. 147-157 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We describe conditions which lead to complete helix formation of poly(I) in the presence of NH4+. Binding of NH4+ is shown to be specific in the presence of Li+, which does not by itself support helix formation under these conditions. The NH4+-poly(I) complex is characterized by uv, CD, and ir spectroscopy. The CD spectrum is strikingly different from those of the Na+ or K+ complexes, the first extremum being changed from negative for the metal ions to positive for NH4+. A stereospecific model is proposed for the NH4+-poly(I) helix in which the N of NH4+ is located on the axis of the four-stranded helix, midway between planar tetramers formed by the bases. The model is consistent with the tetrahedral symmetry of NH4+, the requirement for four acceptable hydrogen bonds, the observed stability of the helix, and the accepted geometry of the backbone.
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  • 41
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    Biopolymers 21 (1982), S. 159-167 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It has recently been proven that the counterion condensate around an isolated line charge in an electrolyte, as characterized by nonlinear Poisson-Boltzmann theory, is an encapsulating δ-function. Here the identical result is shown to hold in the framework of the polyelectrolyte theory of Fuoss, Katchalsky, and Lifson. The proof fully exploits analytic solutions to the differential equation which are not available for the nonlinear, cylindrical Poisson-Boltzmann equation.
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  • 42
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    Biopolymers 21 (1982), S. 203-218 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The extent and modes of binding of the divalent metal ions Mn2+ and Co2+ to DNA and the effects of salt on the binding have been studied by measurements of the effects of these paramagnetic metal ions on the longitudinal and transverse relaxation rates of the protons of the solvent water molecules, a technique that is sensitive to overall binding. The number of water molecules coordinated to the DNA-bound Mn2+ and Co2+ is found to be between five and six, and the electron spin relaxation times and the electron-nuclear hyperfine constants associated with Mn2+ and Co2+ are little or not affected by the binding. These observations indicate little disturbance of the hydration sphere of Mn2+ and Co2+ upon binding to DNA. An average 2-3-fold reduction in the exchange rate of the water of hydration of the bound metal ions and an order-of-magnitude increase in their rotational correlation time are attributed to hydrogen-bond formation with the DNA. The binding constants of Mn2+ to DNA, at metal concentrations approaching zero, are found to be inversely proportional to the second power of the salt concentration, in agreement with the predictions of Manning's polyelectrolyte theory. A remarkable quantitative agreement with the polyelectrolyte theory is also obtained for the anticooperativity in the binding of Mn2+ to DNA, although the experimental results can be well accounted for by another simple electrostatic model. The various modes of binding of divalent metal ions to DNA are discussed.
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  • 43
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    Biopolymers 21 (1982), S. 265-275 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The dc electrical conductivity of films of the polyelectrolyte complexes of glycol chitosan (GlChi) with the sodium salts of dextran sulfate (DS), carboxymethyl cellulose (CMC), polygalacturonic acid (GalUA)n, and alginic acid (AlgA) was measured at temperatures above and below room temperature. The maximum field strength in the thinnest film used amounted to 3 × 104 V/cm. A plot of normalized current against the reciprocal of the absolute temperature revealed two regions with different slopes, and activation energies in these two regions have been obtained for all the complexes. The activation energies in the high-temperature region vary from 0.85 to 1.18 eV and in the low-temperature region from 0 to 0.22 eV. Reasons are given to show that the conductivity is probably ionic. Near room temperature, the current-voltage relation is almost linear in the GlChi-DS complex, while in the other three complexes the current varies as a power n of the voltage with the value of n ranging from 1.7 to 2.5. A rise in temperatures causes an increase in the slope of the log I vs log V plot in GlChi-DS and GlChi-CMC complexes. The nonlinear current-voltage relation is ascribed to a space-charge-limited conductivity.
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  • 44
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    Biopolymers 21 (1982), S. 301-319 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Five different glucomannan samples were recrystallized from dilute solution. Depending on the experimental conditions, the crystals obtained could be identified as corresponding to the mannan I (anhydrous precipitate of more or less regular lozenge-shaped crystals) or mannan II (hydrated gel-forming pseudo-fibrillar precipitate). High-molecular-weight material, low temperature of crystallization, or a polar crystallization medium favored the mannan II polymorph, whereas a low-molecular weight, a high temperature of crystallization, and a crystallization medium of low polarity yielded the mannan I polymorph. Since the base-plane unit-cell dimensions are fairly constant with respect to variation of glucose, it is likely that isomorphous replacement of mannose by glucose occurs in glucomannan crystallization; the data also indicate that perfection of the glucomannan crystals was reduced in specimens having a high glucose:mannose ratio. The oriented crystallization of glucomannan on cellulose microfibrils was also studied under conditions where the mannan I polymorph was obtained. This gave shish-kebab structures that were characterized.
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  • 45
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The primary hydration process of native biopolymers is analyzed in a brief review of the literature, pertaining to various aspects of biopolymer-water systems. Based on this analysis, a hydration model is proposed that implies that the solution conformation of native biopolymers is stable at and above a critical degree of hydration (hp′ = 0.06-0.1 g H2O/g polymer). This water content corresponds to the fraction of strongly bound water, and amounts to ∼20% of the primary hydration sphere. In order to test this model, detailed sorption-desorption scanning experiments were performed on a globular protein (α-chymotrypsin). The results obtained are consistent with the proposed hydration model. They show that under certain experimental conditions, sorption isotherms can be obtained that do not exhibit hysteresis. These data represent equilibrium conditions and are thus accessible to thermodynamic treatment. Valid thermodynamic functions, pertinent to the interaction of water with biopolymers in their solution state, can be obtained from these sorption experiments.
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  • 46
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    Biopolymers 21 (1982), S. 451-458 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The light scattering of bovine serum albumin (BSA) has been measured at protein concentration up to 90 g/L and at pH values between 4.4 and 7.6. The dependence of scattering on both protein concentration and pH may be quantitatively accounted for by a simple extension of the hard-sphere model for protein solutions [Ross, P. D. & Minton, A. P. (1977) J. Mol. Biol. 112, 437-452] allowing for electrostatic repulsions between molecules. According to the extended model, the radius of the effective hard spherical particle representing BSA varies with the net electrical charge of the BSA molecule in a manner which may be calculated from electrostatic theory.
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  • 47
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    Biopolymers 21 (1982), S. 475-497 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A complete analysis of all possible conformations with correct hydrogen bonds of the collagen II type was performed on the basis of developed simultaneous equations. Using a unimodal search (by varying Ψ3), the energetically favorable structure was obtained. No other energetically satisfactory structural solutions are possible. The next aim was to obtain a precise model of the molecule. The program used includes a subroutine for continual deformation of the pyrrolidine rings. The set of parameters determining the structure consists of 14 independent variables (8 dihedral and 6 bond angles). As starting points for the energy optimization, conformations produced by scanning and some structures from previous work were used. The final structures (practically the same for both polymers) have helix parameters h = 0.285 nm and t = 52°, which are in excellent agreement with the 7/2 symmetry of diffraction data. The conformations of the pyrrolidine rings are of the B type, i.e., C2-Cβ-exo-Cγ-endo. For both polypeptides, the conformations of imino acids in position 3 of the triplet are the same; in position 2, however, they are slightly different. The difference in diffraction patterns for the 7/2 and 10/3 helices is discussed.
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  • 48
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    Biopolymers 21 (1982), S. 547-563 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The CD spectrum of the enzyme adenylate kinase has been investigated. Theoretical calculations, based on the x-ray crystal structure, have been carried out by means of an origin independent matrix formalism. The entire molecule was included in the calculations in the sense that essentially all electronic transitions that occur at wavelengths longer than 185 nm were included in the basis set. A linear dielectric function was utilized to evaluate the intertransition coupling potentials. The results of the theoretical calculations were in reasonable agreement with experimental CD spectra of the molecule.
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  • 49
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    Biopolymers 21 (1982), S. 633-652 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The mode of action of many antitumor agents entails the inhibition of nucleic acid synthesis. Because many of the drugs can intercalate, it is assumed that intercalation is an important step in the mechanism of biological activity. As intercalants contain a planar chromophore as an ingredient essential for intercalation, chromophores that should fit into DNA are desired. This is the main theme of this investigation. Binding to DNA of fundamental moieties, protonated pyridine, aniline, phenol, quinone, and 4H-thiopyran-4-one, is studied to determine their optimum placement in DNA. The optimum orientations for each moiety are superimposed to form polyaromatic systems that can intercalate in a manner in which functional groups on these chromophores are oriented as in the moieties themselves. Ideal intercalants proposed contain three and four fused ring system, have protonated ring nitrogen atoms located to maximize the electrostatic interactions with DNA, hydroxy and amino groups that can hydrogen bond to the OII and O5′ phosphate backbone atoms, and carbonyl and sulfur groups in the central position of the ring system to provide variations in the chromophore and to interact with the relatively positive region in the intercalation site. The optimum orientation occurs when the chromophore and the base pairs overlap to the maximum extent. The ideal intercalants are fundamentally of the type:
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  • 50
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    Biopolymers 21 (1982), S. 665-677 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: DNA reassociation kinetics using the phenol emulsion reassociation technique (PERT) [Kohne, D. E., Levison, S. A. & Byers, M. J. (1977) Biochemistry 16, 5329-5341] has been investigated at high DNA concentrations using an endonuclease S1 assay of reaction progress. Apparent second-order rate constants fall on two intersecting straight lines when presented as a function of DNA concentrations on a log-log plot. In the low DNA concentration range, the rate constants drop about 10-fold when concentration increases 1000-fold. In the high DNA concentration range, the rate constants drop more than 10-fold when concentration increases 10-fold. The slopes of these lines are the same in different solvents and at different temperatures. The intersection between the lines occurs when the available catalytic surface is saturated. At high DNA concentrations, high-complexity heterologous denatured DNA apparently competes 2-4 times better for the surface than homologous DNA because it does not participate in a reassociation reaction. Native and partially native DNA molecules cannot compete with single-stranded DNA for a saturated surface. At high DNA concentrations, reactions using PERT become dependent on the single-strand DNA length. Increasing length lowers reassociation rates.
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  • 51
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    Topics: Chemistry and Pharmacology
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  • 52
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    Biopolymers 21 (1982), S. 859-872 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Classical potential functions (CPF) calculations on 3′-mononucleotides, the building blocks of nucleic acids, predict a correlation between the sugar ring pucker and the torsion angle Φ′ around the C3′—O3′ bond. In ribonucleotides, the value of Φ′ depends on the sugar pucker, viz. the C2′-endo sugar pucker is associated with Φ′ = 210° and 270°, while the C3′-endo sugar pucker favors only Φ′ = 210°. On the other hand, in deoxyribonucleotides, both sugar puckers show a preference for Φ′ = 180°. These theoretical predictions are fully corroborated by the results obtained from x-ray and nmr studies on mono-, di-, and polynucleotides.
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  • 53
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    Topics: Chemistry and Pharmacology
    Notes: The effect of several surfactants on the secondary structure of bovine β-lactoglobulin B was determined from the circular dichroism spectra. The spectra were measured at several concentrations of surfactant ranging from 1 mg/mL to the critical micelle concentration. The surfactants studied were sodium dodecyl, decyl, and octyl sulfate, sodium dodecyl sarcosinate, dodecyltrimethylammonium bromide. The data were analyzed using the method of Chen et al. [Biochemistry (1974) 13, 3350-3359] to determine the percentage of α-helix, β-sheet, and unordered form at each surfactant concentration. In every case, an increase in structured form and a 20-25% decrease in the amount of unordered form was noted when the surfactant concentration reached the critical micelle concentration. However, the relative amounts of the two structured forms present depend on the surfactant used. The profile of the secondary structure of the protein also varied from surfactant to surfactant as the protein was titrated, probably reflecting the delicate balance between ionic and nonionic forces that governs the secondary structure of β-lactoglobulin and most other globular proteins in aqueous solution.
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  • 54
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: Amino acids are known to differ in their individual preferences for each of the four positions of the β-turn conformation formed by tetrapeptide segments. Proline and glycine show relatively high preferences for positions 2 and 3, respectively, of the β-turn. Using tripeptides of the type N-acetyl-Pro-Gly-X-OH, where X = Gly, Ala, Leu, Ile, and Phe, we have sought to study the influence of the 4th residue X on the stability of the β-turn conformation in these tripeptides. Our nmr and CD results show that the β-turn stability is quite significantly governed by the nature of the amino acid residue at this position in the following order: Leu 〉 Ala 〉 Ile, Gly 〉 Phe.
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  • 55
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    Biopolymers 21 (1982), S. 1153-1166 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Thermodynamic studies of the binding of adamantanecarboxylate to cyclodextrins have been made as a function of temperature and added organic cosolvent (methanol) using flow microcalorimetry. The negative heat capacity change associated with the adamantanecar-boxylate/β-cyclodextrin interaction and the fact that the interaction is weakened by the addition of methanol implicate the binding process as being a hydrophobically driven one. The negative enthalpy change (ΔH0 = -5.5 kcal/mol) and near-zero entropy change (ΔS0 = 1.5 cal/mol deg) are quite different from the values normally expected for a hydrophobic bond, indicating that other bonding forces are important in addition to the hydrophobic effect. The relative contribution of the hydrophobic effect and other bonding forces (most likely van der Waals forces) to the overall binding was judged from an analysis of the dependence of the thermodynamics of the association process on the surface tension of the water-methanol mixtures following a model for “solvophobic” bonding described by Sinanoglu [Molecular Associations in Biology (1968) Academic Press, New York, pp. 427-445]. From this analysis, adamantane-carboxylate/cyclodextrin complex formation is found to be driven to the extent of -1.9 kcal/mol by the hydrophobic effect. Furthermore, the hydrophobic driving force is found to be characterized by a positive ΔS0 of 10 cal/mol deg. The remaining free energy of binding (and the ΔH0 of binding of ∼-6 kcal/mol) is then due to the intrinsic (surface-tension-independent) van der Waals interaction between the ligand and cyclodextrin cavity.
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  • 56
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    Biopolymers 21 (1982) 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 57
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: Pivaloyl-L-Pro-Aib-N-methylamide has been shown to possess one intramolecular hydrogen bond in (CD3)2SO solution, by 1H-nmr methods, suggesting the existence of β-turns, with Pro-Aib as the corner residues. Theoretical conformational analysis suggests that Type II β-turn conformations are about 2 kcal mol-1 more stable than Type III structures. A crystallographic study has established the Type II β-turn in the solid state. The molecule crystallizes in the space group P21 with a = 5.865 Å, b = 11.421 Å, c = 12.966 Å, β = 97.55°, and Z = 2. The structure has been refined to a final R value of 0.061. The Type II β-turn conformation is stabilized by an intramolecular 4 → 1 hydrogen bond between the methylamide NH and the pivaloyl CO group. The conformational angles are φPro = -57.8°, ψPro = 139.3°, φAib = 61.4°, and ψAib = 25.1°. The Type II β-turn conformation for Pro-Aib in this peptide is compared with the Type III structures observed for the same segment in larger peptides.
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    Biopolymers 21 (1982), S. 1333-1363 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The folding-unfolding process of reduced bovine pancreatic trypsin inhibitor was investigated with an idealized model employing approximate free energies. The protein is regarded to consist of only Cα and Cβ atoms. The backbone dihedral angles are the only conformational variables and are permitted to take discrete values at every 10°. Intraresidue energies consist of two terms: an empirical part taken from the observed frequency distributions of (φ,ψ) and an additional favorable energy assigned to the native conformation of each residue. Interresidue interactions are simplified by assuming that there is an attractive energy operative only between residue pairs in close contact in the native structure. A total of 230,000 molecular conformations, with no atomic overlaps, ranging from the native state to the denatured state, are randomly generated by changing the sampling bias. Each conformation is classified according to its conformational energy, F; a conformational entropy, S(F) is estimated for each value of F from the number of samples. The dependence of S(F) on energy reveals that the folding-unfolding transition for this idealized model is an “all-or-none” type; this is attributable to the specific long-range interactions. Interresidue contact probabilities, averaged over samples representing various stages of folding, serve to characterize folding intermediates. Most probable equilibrium pathways for the folding-unfolding transition are constructed by connecting conformationally similar intermediates. The specific details obtained for bovine pancreatic trypsin inhibitor are as follows: (1) Folding begins with the appearance of nativelike medium-range contacts at a β-turn and at the α-helix. (2) These grow to include the native pair of interacting β-strands. This state includes intact regular secondary conformations, as well as the interstrand sheet contacts, and corresponds to an activated state with the highest free energy on the pathway. (3) Additional native long-range contacts are completely formed either toward the amino terminus or toward the carboxyl terminus. (4) In a final step, the missing contacts appear. Although these folding pathways for this model are not consistent with experimental reports, it does indicate multiple folding pathways. The method is general and can be applied to any set of calculated conformational energies and furthermore permits investigation of gross folding features.
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  • 59
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: Peptide NH chemical shifts and their temperature dependences have been monitored as a function of concentration for the decapeptide, Boc-Aib-Pro-Val-Aib-Val-Ala-Aib-Ala-Aib-Aib-OMe in CDCl3 (0.001-0.06M) and (CD3)2SO (0.001-0.03M). The chemical shifts and temperature coefficients for all nine NH groups show no significant concentration dependence in (CD3)2SO. Seven NH groups yield low values of temperature coefficients over the entire range, while one yields an intermediate value. In CDCl3, the Aib(1) NH group shows a large concentration dependence of both chemical shift and temperature coefficient, in contrast to the other eight NH groups. The data suggest that in (CD3)2SO, the peptide adopts a 310 helical conformation and is monomeric over the entire concentration range. In CDCl3, the 310 helical peptide associates at a concentration of 0.01M, with the Aib(1) NH involved in an intermolecular hydrogen bond. Association does not disrupt the intramolecular hydrogen-bonding pattern in the decapeptide.
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    Biopolymers 21 (1982), S. 1469-1472 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    Biopolymers 21 (1982), S. 1479-1487 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A formalism for extracting the conformations of a proline ring based on the bistable jump model of R. E. London [(1978) J. Am. Chem. Soc. 100, 2678-2685] from 13C spin-lattice relaxation times (T1) is given. The method is such that the relaxation data are only partially used to generate the conformations; these conformations are constrained to satisfy the rest of the relaxation data and to yield acceptable ring geometry. An alternate equation for T1 of 13C nuclei to that of London is given. The formalism is illustrated through an example.
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  • 62
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    Biopolymers 21 (1982), S. 1521-1534 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have used broadline proton magnetic resonance to study molecular motion in cellulose, a sodium pectate solution, a calcium pectate gel, and isolated bean cell walls. All samples were prepared in D2O to minimize the contribution of water to the observed signals. For each sample, a free induction decay was obtained, and the second moment, spin-lattice relaxation, and dipolar relaxation were measured. Our results show that the large majority of protons in cellulose are immobile. Rigid and mobile domains were also observed in the pectate samples. We have shown that gelation induces large-scale changes in the free induction decay, the second moment, and the relaxation behavior of the pectate. As with the other samples, rigid and more mobile domains were found in bean cell walls. The fraction in the rigid domains is much larger than the fraction of cellulose in the sample, suggesting that the noncellulosic wall components are also organized into rigid and mobile domains.
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  • 63
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: Conformational energy computations were carried out on collagenlike triple-stranded conformations of several poly(tripeptide)s with the general structure CH3CO—(Gly—X—Y)3—NHCH3. The sequences considered had various amino acid residues in position X or Y of the central tripeptide, with either Pro or Ala as a neighbor, i.e., Gly-X-Pro, Gly-X-Ala, Gly-Pro-Y, and Gly-Ala-Y. Minimum-energy conformations were computed for the side chains, and their distributions were compared for the four sequences. The residues used were Abu (= α-aminobutyric acid), Leu, Phe, Ser, Asp, Asn, Val, Ile, and Thr. The conformational energy of a —Ch2—CH3 side chain in Abu was mapped as a function of the dihedral angle χ1. Intrastrand interactions with neighboring residues do not affect the conformations of a side chain in position Y, and they have a minor effect on it in the X-Ala sequence, but they strongly restrict the conformational freedom of the side chain in the X-Pro sequence. Conversely, interstrand interactions do not affect side chains in position X, but they strongly restrict the conformational freedom of a side chain in position Y if there is a nearby Pro residue in a neighboring strand. Hydrogen bonds with the backbone can be formed in some conformations of long polar side chains, such as Asp, Asn, or Gln. All amino acid residues can be accommodated in collagen. Because of the interactions mentioned above, steric and energetic constraints can be correlated with observed preferences of certain amino acids for positions X or Y in collagen. Hence, these preferences may be explained, in part, in terms of differences in the conformational freedom of the side chains in the triple-stranded structure.
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    Biopolymers 21 (1982), S. 1657-1666 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ionization constants of the tyrosyl groups of chymotrypsinogen and of nitrated-chymotrypsinogen (two tyrosyl residues nitrated) have been determined by difference spectrophotometry. In chymotrypsinogen, two of the four tyrosyl groups ionize without any time dependence. Above pH greater than ca. 12.5, time-dependent spectral changes are seen for 0.7 group equivalent. The data can be fitted to the values of pK′1 9.75 ± 0.07, pK′2 11.55 ± 0.05, pK′3 13.30 ± 0.05. In nitrated-chymotrypsinogen, the two nitrated tyrosyl residues have pK′1 6.44 and pK′2 8.30. For both proteins, these pK′ values are in agreement with those evaluated from potentiometric titration and calorimetric data using computer-assisted curve-fitting analysis.
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    Biopolymers 21 (1982), S. 2195-2203 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformation of several samples of poly(α,β-L-Asp) with a molar fraction of β-bonds ranging from 0.1 to 0.55 was investigated by means of ir and CD spectroscopy and potentiometric titration and compared with the results obtained previously with poly(α-L-Asp). All samples investigated underwent a conformational change induced by changes in their degree of ionization: unpronounced ir absorption of amide V at 650 cm-1 was shifted to 620 cm-1 and substantially increased on deionization; CD spectra changed with the degree of ionization, passing through an isosbestic point; and the pattern of the titration curves was more complex than that of a simple polyelectrolyte. The conformation developing with the decreasing degree of ionization may be considered to be α-helix, as deduced according to the analogous behavior of other polypeptides. The extent of the conformational change in the individual samples depends on the molar fraction of β-bonds: the higher it is, the lower is the helix-forming ability of the sample.
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  • 66
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    Biopolymers 21 (1982), S. 2225-2239 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The use of 1H-nmr spectroscopy is demonstrated to be a useful analytical method to characterize the structure of synthetic peptides attached to soluble, macromolecular polyoxyethylene (POE) supports in the liquid-phase method (LPM) of peptide synthesis. We report an extensive 360-MHz 1H-nmr study of POE-bound homo-oligo-L-methionine peptides. A combination of high field and selective saturation or Redfield pulse methods allows resolution of individual backbone NH and α-CH resonances of dilute peptides in the presence of strong resonances from macromolecular POE and/or protonated solvents. The nmr spectra for the POE-bound peptides in CDCl3 are qualitatively similar to those of the low-molecular-weight Boc-L-Metn-OMe peptide esters. This corroborates other observations that POE has little effect on peptide stucture. The backbone α-CH region of peptides is overlapped by signals from the terminal oxyethylene group of POE, but the peptide side-chain and low-field backbone NH resonances are well resolved. In trifluoroethanol the Boc-(L-Met)n-NH-POE heptamer and octamer adopt the right-handed α-helical structure, and the present nmr studies provide evidence for two strong intramolecular hydrogen bonds to stabilize the helices. In water, the N-deblocked derivatives, (L-Met)n-NH-POE oligomers adopt β-sheet structure and manifest well-resolved nonequivalent NH resonances with 6-7 Hz 3JNH-CH coupling constants.
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    Biopolymers 21 (1982), S. 2241-2252 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The concerted model of Monod, Wyman, and Changeux is generalized so that all effects of interactions for an enzyme operating at a nonequilibrium stationary state are considered. In contrast to the original model, which is based on an analogy to equilibrium ligand binding, the generalization may show both “positive” and “negative cooperativity” in both catalytic binding and conformational processes. Furthermore, in contrast to any equilibrium binding model, the Hill coefficients may be greater than the number of sites n. For catalysis, the maximum value is 2n, and for conformational changes, n + 1. These points are illustrated by two cases that yield simpler analytic expressions. The first obtains when catalysis occurs on a much faster time scale than the conformational changes, and the second, when this situation is reversed.
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    Biopolymers 21 (1982), S. 2315-2316 
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    Keywords: Chemistry ; Polymer and Materials Science
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  • 69
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    Biopolymers 21 (1982), S. 1473-1477 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
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    Biopolymers 21 (1982) 
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    Keywords: Chemistry ; Polymer and Materials Science
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  • 71
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    Biopolymers 21 (1982), S. 1503-1520 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By combining gel permeation chromatography (GPC) and light-scattering spectroscopy, including photon correlation and angular distribution of absolute scattered intensity, we were able to characterize immunologically active Haemophilus influenzae type b polysaccharide (HIB Ps) bovine serum albumin (BSA) conjugates in terms of equivalent hydrodynamic radius rh ∼ (6.2 ± 0.6) × 102 Å, apparent radius of gyration rg ∼ (5.4 ± 0.3) × 102 Å, apparent molecular weight Mw ∼ (3.5 ± 0.4) × 106 g/mol, and a second virial coefficient A2 ∼ (1.9 ± 0.3) × 10-4 cm3 mol/g2. We could study the effects of each of the processes in the conjugate formation according to the following procedure: BSA (dialysis, modification, fractionation) + HIB Ps → HIB Ps/BSA conjugate (conjugate formation, fractionation). Narrow distributions of HIB Ps BSA conjugate formation can be achieved using fractionated BSA.
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    Biopolymers 21 (1982), S. 1569-1586 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have measured the ir absorption of 5′CMP, 5′IMP, and poly(I)·poly(C) from ∼25 to ∼500 cm-1. From a comparison of the data with the previously measured absorption of the corresponding nucleosides and bases we can identify several “lines” associated with the deformation of the ribose ring. Out-of-plane deformation of the bases contributes strongly to vibrations near 200 cm-1. The same ribose vibrations observed in the nucleotides are found in poly(I)·poly(C). They sharpen with increasing water absorption. A study of the spectra of poly(I)·poly(C) as a function of the adsorbed water indicates that water does not contribute in a purely additive fashion to the polynucleotide spectrum but depends on the conformation of the helix. However, the only spectral feature that shifts drastically with conformation is near 45 cm-1. Measurements at cryogenic temperatures indicate some sharpening of the spectrum of poly(I)·poly(C). Instead, no sharpening is observed in the spectrum of the nucleotides. Shear degradation of poly(I)·poly(C) produces significant spectral changes in the 200-cm-1 region and sharpening of the features assigned to the low-frequency ribose-ring vibrations.
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    Biopolymers 21 (1982), S. 1735-1747 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A study of the oxygen replacement reaction of carbon monoxide-saturated hemoglobin (HbA0) was carried out using spectroscopic, calorimetric, and pH titration methods. Under fully saturated conditions the replacement reaction can be defined by a single partition constant over all ratios of bound oxygen to carbon monoxide. This indicates that under saturating conditions Haldane's first law for the ligand binding of gas mixtures holds for any CO/O2 ratio. It further shows that there is no appreciable difference in relative CO-O2 affinity between the α- and β-chains. The same partition coefficient was found to hold for different pH, buffer, and allosteric effector conditions. The lack of any pH dependence of the partition coefficient was confirmed by the absence of proton changes for the replacement reaction. The temperature dependence of the partition coefficient and calorimetric results yield a value for the enthalpy of the reaction of -3.65 ± 0.29 kcal/mol/heme.
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    Biopolymers 21 (1982), S. 1763-1780 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We demonstrate that the isotropic absorption and linear dichroism in an unknown flow field can be used to determine base tilt in polynucleotides if three transitions are measured and the directions of the corresponding dipoles are known. The method is applied here to reach conclusions about the base tilt in poly(rA), poly(rA)+·poly(rA), and poly(rC). The respective values are: 28° tilt about the axis + 50° toward C8 from the C1′ → N9, and 25° tilt about the axis + 118° toward C5 from C1′ → N1. The results for poly(rA)+·poly(rA) are consistent with the accepted model. Spectra were measured for poly(rC)+·poly(rC), but definite conclusions must await reliable directions for transition dipoles. The dipole direction for the 218-nm transition in rC is found to be +13° or +43° toward C5 from C1′ → N1. The CD spectra to about 168 nm are presented and discussed.
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    Biopolymers 21 (1982), S. 1811-1832 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Measurements of stress relaxation in uniaxial extension and associated time-dependent birefringence have been made on bovine fibrin film, prepared by gentle compaction of coarse fibrin clots, containing 13-22% fibrin plasticized with either aqueous buffer or glycerol. Both unligated and ligated (i.e., with α-α and γ-γ ligation by fibrinoligase, factor XIIIa) films were studied. Both types showed two stages of stress relaxation, with time scales of approximately 10 and 103-104 s, respectively, with a plateau region between. In the plateau, the nominal (engineering) stress for ligated glycerol-plasticized film is proportional to In λ, where λ is the stretch ratio, up to λ ≅ 2, and it decreases with increasing temperature. For unligated glycerol-plasticized film, the stresses are smaller by a factor of one-half to one-third. For ligated film, the second stage of relaxation is relatively slight, and recovery after release of stress is often nearly complete. For unligated film, the second stage involves a substantial drop in stress, and after recovery there is a significant permanent set. A second relaxation for ligated film reproduces the first, but for unligated film it reproduces the first only if the initial relaxation is terminated before the second stage; otherwise, the second relaxation shows a weaker structure. The behavior of water-plasticized film is similar to that of glycerol-plasticized except that the second stage of relaxation occurs at shorter times. During the first stage of stress relaxation, up to about 100 s, the birefringence and the stress-optical coefficient increase; during the plateau zone of stress relaxation, the birefringence of ligated films is approximately constant and is proportional to 2λ2/(λ2 + 1) - 1, where λ is the stretch ratio. This dependence is predicted by a two-dimensional model in which rodlike elements in the plane of the film are oriented with independent alignment. During the final stage of stress relaxation, the birefringence of ligated films decreases slightly; that of unligated films decreases substantially, but less rapidly than the stress, corresponding to a further increase in the stress-optical coefficient. With additional information from small-angle x-ray scattering reported in an accompanying paper, the first stage of relaxation is attributed to partial release of bending forces in the fibers by orientation, accompanied by increased birefringence. The second stage is attributed, for ligated films, to an internal transition in the fibrin units accompanied by elongation of some of the fibers; and in the unligated films, to a combination of the latter transition with slippage of protofibrils lengthwise within the fiber bundles that causes some loss of orientation, which diminishes the birefringence.
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    Biopolymers 21 (1982), S. 1899-1908 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A microscope capable of measuring the CD of intact single eukaryotic cells, DNA microcrystals, and other microscopic structures has been constructed and tested. It can measure the CD spectra in the 200- and 800-nm wavelength range and consists of a modification to a standard Cary 60 CD machine in combination with a Zeiss uv microspectrometer. Preliminary CD spectra of red blood cells and lymphocytes are presented.
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    Biopolymers 21 (1982), S. 1909-1926 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: The distribution of fibers in agarose gels has been studied by electron-microscopic examination of replicas formed from freeze-fracture surfaces. For gels set in water, the results obtained support the model proposed for the gel structure by Arnott et al. (1974) of a random array of long, straight, connected fibers, with each fiber having a diameter equivalent to that of an aggregate of approximately 10-30 agarose helixes, depending on the initial agarose concentration. The density of these fibers, their water content, and the total length of fibers per unit volume have been derived from the measured distribution of intersections per unit area of freeze-fracture surfaces. For gels set in the presence of salt, the distribution of fibers becomes distinctly non-Poissonian, leading to larger interfiber spaces and a gel of greater effective pore size. The larger pore size of gels set in the presence of salt also has been revealed by electrophoretic measurements in which the relative migration rates of plasmid DNA molecules of varying conformations have been determined.
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    Biopolymers 21 (1982), S. 1933-1943 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Energy embedding has been shown recently to be a useful extension of the distance geometry approach to conformational calculations in the case of very small molecules and simple energy functions. This paper tests the ability of energy embedding to locate low energy conformations satisfying both weak and strong geometric constraints when the molecule is the small protein, bovine pancreatic trypsin inhibitor, and the energy function is the complicated Oobatake-Crippen residue-residue potential. Using the potential function alone, the algorithm reaches a structure with energy lower than that of the native conformation, but with little resemblance to it. Aided by numerous geometric constraints, such as preformed secondary structure segments, the algorithm again finds a local minimum with energy better than that of the native, and with only 3.3 Å rms deviation from it. This is significantly closer to the native value than can be obtained using standard distance geometry and the geometric constraints alone. Thus, energy embedding using the Oobatake-Crippen potential function is a significant help in finding native conformations of proteins. However, additional trials on a hairpin bend fragment of trypsin inhibitor demonstrate the potential's shortcomings in encouraging proper secondary structure.
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  • 79
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    Topics: Chemistry and Pharmacology
    Notes: Molecular-mechanics calculations have been carried out on the base-paired deoxy dodecanucleoside undecaphosphates d(CGCGAATTCGCG)2 and d(A12)·d(T12). These refinements were carried out using the model-built Arnott B-DNA geometry as initial coordinates (with a helix repaeat of 10.0 residues/turn), as well as helix repeats ranging from 9 to 12 residues/turn. There was some variation in the optimum calculated helix repeat, depending on the dielectric model, the presence or absence of counterions, and the method used for inclusion for nonbonded interactions; the most interesting general result of these calculations was the coupling between furanose sugar puckering and twist. This coupling was observed for all models. With a helix repeat of 9.0 residues/turn, all sugars remain C(2′)endo after refinement; as the helix repear increases to 12.0 residues/turn, the number of sugars repuckering to O(1′)endo and C(3′)endo increases also. With our most rigorous model (i.e., a model with no cutoff distance for nonbonded interactions) and a helix repeat of 10.0 residues/turn, we find a greater tendency for pyrimidine than purine repuckering in d(CGCGAATTCGCG)2, in agreement with the x-ray structural data of Drew et al. [(1981) Proc. Natl. Acad. Sci. USA 78, 2179-2185].We also carried out a number of calculations in which we “forced” one of two deoxy sugars to repucker or one of the C3′-O3′-P-O5′ (ω) torsion angles to change from gauche- to trans using dihedral angle constraints. After the constraints were removed, some of these structures “reverted” to the sugar pucker of the initial structures, while others remained repuckered. In all cases, the energies for repuckered structures after refinement were very similar to energies of the initial structure. Experiments and theory suggest that local conformational fluctuations play an essential role in nmr relaxation of 31P and 13C atoms in double-helical DNA. The results of our previous calculations on hexanucleoside phosphates and the calculations presented there are consistent with an important contribution to nmr relaxation processes of conformational changes in the torsion angle ω′ from gauche- to trans and deoxy sugar repuckering from C(2′)endo to C(3′)endo. Specifically, the calculations presented here indicate a very flexible phosphate backbone in helixes having an intermediate helix repeat of 10 to 11 residues/turn. These helixes may accommodate sugars of variable pucker without significantly disrupting base-base hydrogen-bonding and stacking interactions. All of the variant structures are similar in energy, suggesting that conversion between them can occur on a nanosecond time scale, as observed in nmr relaxation experiments.
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: The microwave absorption of aqueous solutions of DNA extracted from E. coli has been studied between 8 and 12 GHz by the use of an optical heterodyne technique. By measuring optically the temperature rise produced in an absorbing sample by pulsed microwave radiation, unambiguous, direct measurement of the microwave absorption is possible. Our results show that E. coli DNA absorbs microwaves in the 8-12-GHz region substantially more efficiently than water, which is itself an extremely efficient absorber. The observed absorption is featureless and decreases slightly with increasing frequency. These observations are consistent with an explanation involving direct absorption by longitudinal acoustic modes of the double helix.
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    Biopolymers 21 (1982), S. 251-263 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: The formation of polyelectrolyte complexes of glycol chitosan (GlChi) with sodium salts of dextran sulfate (DS), carboxymethyl cellulose (CMC), polygalacturonic acid (GalUA)n, and alginic acid (AlgA) has been studied. The number of ionizable groups per pyranose ring and the degree of dissociation as a function of pH in the polycation and polyanions have been determined using conductometric and potentiometric titrations. The formation of the complexes at different pH values has been followed by turbidity measurements. It is found that stoichiometric complexes of the polycation with CMC, (GalUA)n, and AlgA are formed at a mixing ratio of 0.5, indicating that the conformation may correspond to chains of equal lengths. In the case of the complex of GlChi with DS, the stoichiometric composition corresponds to a mixing ratio of 0.62. Thin transparent films of the complexes have been obtained by dehydration under reduced pressure on a layer of mercury. The dielectric constant ε′ and loss ε″ of thin films of these complexes have been measured in the range of frequencies of 1-100 kHz at different temperatures above and below room temperature. The GlChi-DS complex shows very little change in the values of ε′ and ε″ with frequency or temperature. On the other hand, films of GlChi-CMC and GlChi-(GalUA)n complexes show a significant increase in ε′ and ε″ as the temperature is increased above room temperature. The increase is more prominent at low frequencies. This behavior is attributed to the Maxwell-Wagner interfacial polarization. In the case of GlChi-AlgA film, the values of ε′ and ε″ increase enormously as the temperature increases. This behavior is similar to the increase in ε′ and ε″ observed by Michels et al. [(1965) J. Phys. Chem. 69, 1456-1465] as the salt concentration increases in another polyelectrolyte complex studied by them. The electric double-layer mechanism proposed by Schwarz [(1962) J. Phys. Chem. 66, 2636-2642] to account for the dielectric properties of biocolloids is shown to account quantitatively for the observations on the GlChi-AlgA film.
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    Chemie in unserer Zeit 16 (1982) 
    ISSN: 0009-2851
    Keywords: Chemistry ; Chemistry
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    Chemie in unserer Zeit 16 (1982), S. 35-45 
    ISSN: 0009-2851
    Keywords: Chemistry ; Chemistry
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    Topics: Chemistry and Pharmacology
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    Chemie in unserer Zeit 16 (1982), S. 69-70 
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    Keywords: Chemistry ; Chemistry
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    Chemie in unserer Zeit 16 (1982), S. 94-100 
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    Keywords: Chemistry ; Chemistry
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    Topics: Chemistry and Pharmacology
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    Chemie in unserer Zeit 16 (1982), S. A32 
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    Keywords: Chemistry ; Chemistry
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    Chemie in unserer Zeit 16 (1982), S. 116-123 
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    Keywords: Chemistry ; Chemistry
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    Topics: Chemistry and Pharmacology
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    Chemie in unserer Zeit 16 (1982), S. A46 
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    Chemie in unserer Zeit 16 (1982), S. 149-159 
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    Keywords: Chemistry ; Chemistry
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    Biopolymers 21 (1982), S. 117-129 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: A melting experiment was performed on the whole set of populations of the replicative form of φX174 DNA, which can be obtained treating this DNA with rat liver nicking-closing enzyme in the presence of ethidium bromide. Gel electrophoresis performed by loading the DNA samples at neutral and alkaline pH allows separation of these populations in discrete sets of bands, which can then be compared. The outcome of the experiments indicates that in the range of electrophoretic mobilities which can be explored, no band is formed exclusively by circular complementary strands which can be separated by alkaline denaturation. These results are compared with what would be expected if double-stranded closed circular DNA had structures other than the canonical double helix. Under nonrestrictive hypotheses, the experiments reported allow one to obtain a minimum estimate of the absolute value of the linking number of a closed circular double-stranded DNA: for native φX174 RF DNA, the linking number appears to be greater than 12 (in absolute value). Some data on the electrophoretic mobility of denatured closed circular duplexes are reported, which still wait for a physicochemical interpretation.
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    Biopolymers 21 (1982), S. 169-179 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Synthetic cyclic octapeptides of general structure cyclo[Glu(γOBzl)-Sar-Gly-(N-R)Gly]2 (R = n-hexyl and cyclohexyl) transport calcium ions selectively across organic phases and phospholipid membranes. We have now used proton nmr spectroscopy (360 MHz) to study the solution conformation(s) of their calcium complexes. When Ca(ClO4)2 was added to solutions of these peptides in CDCl3, nmr spectra of the resulting calcium complexes were characteristic of a single C2-symmetric conformer. From a Karplus-Bystrov analysis of vicinal coupling constants in both the peptide backbone and Glu side chain (treated as an ABCC′MX spin system), in conjuction with model-building studies, a structure was proposed in which the calcium ion is bound in an octahedral-type complex by the four (coplanar) carbonyl groups of the (all-trans) Glu-Sar and Gly-(N-R)Gly peptide bonds. Occurrence of preferred rotamers about Glu side chain Cα-Cβ bonds indicated that restricted rotation in peptide side chains arises upon calcium binding.
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    Biopolymers 21 (1982), S. 25-42 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: (L-Cys)n + N-base systems and (L-Cys)n + (L-Lys)n systems were studied by ir spectroscopy. It is shown that in the water-free systems, SH⃛N ⇌ S-⃛H+N hydrogen bonds are formed. With the (L-Cys)n + N-base systems, both proton-limiting structures in the SH⃛N ⇌ S-⃛H+N bonds have equal weight when the pKa of the protonated N-base is 2 pKa units larger than that of (L-Cys)n. The same is true with the water-free (L-Cys)n + (L-Lys)n system. Thus, with regard to the type of proton potentials present, these hydrogen bonds are proton-transfer hydrogen bonds showing very large proton polarizabilities. This is confirmed by the occurrence of continua in the ir spectra. Small amounts of water open these hydrogen bonds and increase the transfer of the proton to (L-Lys)n. In the (L-Lys)n + N-base systems, with increasing proton transfer the backbone of (L-Cys)n changes from antiparallel β-structure to coil. In (L-Cys)n + (L-Lys)n, the conformation is determined by the (L-Lys)n conformation and changes depending on the chain length of (L-Lys)n. Finally, the reactivity increase in the active center of fatty acid synthetase, which should be caused by the shift of a proton, is discussed on the basis of the great proton polarizability of the cysteine-lysine hydrogen bonds.
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  • 93
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    Biopolymers 21 (1982), S. 101-116 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We report electric-dichroism and electron-microscopic studies of chromatin fibers fixed by protein-protein crosslinking at salt concentrations ranging from 10 to 100 mM. The results confirm a progressive disorganization of the fiber as the salt concentration is lowered. The positive dichroism and large polarizability anisotropy characteristic of the 300-Å diameter fiber found in 100 mM salt are replaced by negative dichroism and smaller effective polarizability anisotropy or dipole moment for samples fixed at lower salt concentration. We interpret the results in terms of segmental, field-induced orientation of the disorganized structure which is present in low salt concentrations. We also observed a field-induced absorbance decrease in chromatin fibers fixed at salt concentration at and below 100 mM. All three optical effects, namely overall orientation of the high-salt fixed fiber, segmental orientation of the low-salt fixed fiber, and field-induced absorbance decrease, occur on roughly the same time scale, 20-100 μs for 50 nucleosome polynucleosomes. The polarizability anisotropy of fibers fixed in 100 mM salt was found to be proportional to the length of the fragment and to the reciprocal square root of the conductivity of the solution used for electric-dichroism measurements. Addition of Mg2+ to the measurement buffer affected the dichroism amplitude of samples fixed below 100 mM salt but not those fixed at 100 mM salt. The results reinforce the need for caution in interpreting electric-dichroism measurements on chromatin fibers because of possible field-induced distortion effects.
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  • 94
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    Biopolymers 21 (1982), S. 219-232 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: DNA with Mn2+ as the only counterion has been prepared, and the extent of the Mn2+ binding was determined under a variety of conditions through measurements of the proton relaxation enhancement of water. The total extent of Mn2+ binding per DNA phosphate is found to be 0.43 ± 0.04, independent of the metal ion concentration in the experimental range of 2.8 × 10-5 to 2.1 × 10-3M. The predictions of Manning's condensation theory and those obtained from solution of the generalized Poisson-Boltzmann equation regarding the extent of divalent ion binding to polyelectrolytes, in the presence and absence of monovalent counterions, are compared with one another and with the experimental results. Good agreement between the two theoretical approaches is found, with less than 14% variance in the predicted extent of binding over a large range of mono- and divalent ion concentrations. While the predictions of both theoretical approaches generally agree with the experimental results, some discrepancies are noted and their possible origins discussed.
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  • 95
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    New York : Wiley-Blackwell
    Biopolymers 21 (1982), S. 1275-1300 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The basic formulas for the incorporation into the diffusion-collision model of the stabilities of intermediate states on the folding pathway are derived and discussed. A hypothetical two-step folding pathway is calculated in detail. A model for the production of incorrectly folded intermediates is suggested and some numerical estimates made. Implications and future directions in the evolution of the model are discussed. Three appendices deal with some mathematical aspects of the model.
    Additional Material: 9 Ill.
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  • 96
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quasielastic light scattering and electrophoretic light scattering experiments were performed on chicken erythrocyte polynucleosome solutions at various temperatures and ionic strengths. The apparent diffusion coefficient, Dapp, was found to depend on the scattering vector K. In general, Dapp can be described as a damped oscillatory function of K in the ionic strength range of 10 to 60 mM and over the temperature range of 10 to 40°C. Electrophoretic light scattering studies on total digest chromatin samples indicate the apparent charge on the polynucleosomes increases as the ionic strength is lowered from 10 to 1 mM. These data are interpreted in terms of fluctuations in the surface charge distribution of the polyion and subsequent inducement of an asymmetric distribution of small ions about the polyion. These fluctuation components lead to the formation of “clusters” of polyions.
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  • 97
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    New York : Wiley-Blackwell
    Biopolymers 21 (1982), S. 1399-1410 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Absorption of radiation by DNA polymer is calculated for the case of bent polymer chains. The molecule is assumed to be straight except for localized bends. The region between two bends is studied in particular. The vibrational properties of the bends are parameterized by a transmission and a reflection coefficient. A general Green function expression for absorption is studied for various values of the damping rate, as well as the transmission/reflection coefficients. Curves of absorption vs frequency are shown for a number of cases.
    Additional Material: 5 Ill.
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  • 98
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: When adsorbed from an aqueous dilute solution at high pH into the pores of an inert cellulose acetate filter, poly(α,L-glutamic acid) remains strongly anchored to the pore walls. The existence of the helix-coil transition for the adsorbed polypeptide in a certain pH range is evidenced by static and dynamic membrane properties displayed by the “activated” filter, such as excess cation uptake, membrane potential, and hyraulic permeability. In particular, the variations of the hydrodynamic thickeness present a sigmoidal shape characteristic of the helix-coil transition at the interface, a transition apparently less sharp than in solution.
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  • 99
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    Biopolymers 21 (1982), S. 343-358 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have studied the linear dichroism (LD) of rat liver chromatin oriented by flow. Soluble chromatin, prepared by brief nuclease digestion, is found to exhibit a positive LD at low ionic strength (1 mM NaCl), with a constant LD/A over the absorption band centered at 260 nm (A, isotropic absorbance). Several previous dichroism studies on soluble chromatin have been performed on sonicated materials and have given negative LD, probably due to the presence of uncoiled DNA. The positive dichroism can be interpreted in terms of a supercoil of DNA in chromatin with a pitch angle larger than 55°, and is, for example, consistent with a model where the cylindrical nucleosome core particles are stacked face to face in the chromatin filament. In contrast to the nuclease-digested chromatin, sonicated chromatin was confirmed to exhibit negative LD. This difference can be attributed to a partial uncoiling of the linker regions between the nucleosomes due to the shearing. The structural transition of chromatin to a compact form can be observed as a reduction of the positive LD of the nuclease-digested chromatin to almost zero in 0.1 M NaCl or in 0.1 mM MgCl2. This transition is due to a decreased electrostatic repulsion between negative phosphate groups on the DNA chain. In the case of Na+, this can be explained as a screening effect due to the bulk concentration of Na+. With Mg2+ a considerably stronger effect may indicate a more localized binding to the phosphates. At ionic strengths higher than 0.5M NaCl, the dissociation of the histones from DNA leads to uncoiling of chromatin. The change in LD during this process shows that histone H1 contributes only to a small degree to the coiling of the DNA chain, whereas histones H3 and H4 play the major role in the coiling.
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  • 100
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: On the basis of measurements of enthalpy of dissociation and of dilution, an interamolecular conformational transition induced by pH change is shown for pectic acid in aqueous solution. Additional evidence is given by potentiometic, viscometric, and chiroptical results. The transition from a more rigid, probably H-bonded, structure prevailing at low pH to a more extended one at around neutrality is accompanied by a ΔH value of about 500 cal/equiv and a ΔS value of 1.6 cal/equiv K in water at 25°C. The addition of salts increases the stability of the rigid conformation without changing the general features of the phenomenon. Dilatometric measurements suggest that the transition is accompanied by practically no change in the overall solvation of the polymer chain.
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