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  • Computational Chemistry and Molecular Modeling  (453)
  • Wiley-Blackwell  (453)
  • Cambridge University Press
  • 1980-1984  (354)
  • 1975-1979  (99)
  • 1981  (354)
  • 1975  (99)
Collection
Keywords
Publisher
  • Wiley-Blackwell  (453)
  • Cambridge University Press
Years
  • 1980-1984  (354)
  • 1975-1979  (99)
Year
  • 1
    Electronic Resource
    Electronic Resource
    Coupled hartree-fock calculation of static and shielding factors for open shell atomic systems (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 1-8 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper a calculation of the static quadrupole polarizabilities and the shielding factors of the atoms and ions of the 2p open shell systems is presented. A fully coupled Hartree-Fock method using the Roothaan formalism is adopted. Calculations have been done for the ground as well as for some valence excited states. An antishielding effect is observed for all the atoms and ions under study.
    Additional Material: 1 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090102
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  • 2
    Electronic Resource
    Electronic Resource
    A new integral transform basis function (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 67-74 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new integral transform function: \documentclass{article}\pagestyle{empty}\begin{document}$$ {\rm exp }\left({{\rm - }\zeta {\rm r}} \right)\int_0^\infty {s(n)r^n dn} $$\end{document} where s(n) is a positive definite shape function, is proposed and investigated. A test on H2+ shows that it does not suffer from the inadequacies of earlier integral transform functions, of the form: \documentclass{article}\pagestyle{empty}\begin{document}$$ r^n \int_0^\infty {c(\zeta ){\rm exp}({{-}\xi r})d\zeta } $$\end{document} where c(ζ) is a positive definite shape function.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090108
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  • 3
    Electronic Resource
    Electronic Resource
    Dispersion relations and spectral densities (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 103-117 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Weyl's eigenvalue theory for ordinary second-order differential equations is discussed for the case of a continuous spectrum. It is demonstrated that the spectral density function obtained from a suitably averaged Green's function, equal to the Weinstein function, can be directly related to the Weyl-Titchmarsh m-function. The explicit connections with scattering theory are derived and it is found that the Weyl and Jost solutions are proportional; the proportionality factor being the reciprocal value of the latter at the origin. The physical interpretation of the complex poles of the spectral density is discussed in relation to Gamow's exponentially growing functions. The advantage of using a formulation that allows for a “perturbation” of boundary conditions is pointed out.
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090111
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  • 4
    Electronic Resource
    Electronic Resource
    Combined CI-HY studies of atomic states. II. Compact wave functions for the be ground stateResearch supported by a grant from the National Science Foundation. (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 149-156 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Combined CI-HY method techniques have been employed in obtaining a 57-term CI-HY wave function with an energy of -14.66632 a.u. A method due to Brown has been adopted for obtaining this wave function and various shorter expansions. A 44-term expansion with an energy of -14.66606 a.u. is analyzed in terms of various pair effects, and qualitative arguments are presented for understanding these effects.
    Additional Material: 2 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090115
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  • 5
    Electronic Resource
    Electronic Resource
    Møller-Plesset theory for atomic ground state energies (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 229-236 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Mø-Plesset theory, in which electron correlation energy is calculated by perturbation techniques, is used in second order to calculate energies of the ground states of atoms up to neon. The unrestricted Hartree-Fock (UHF) Hamiltonian is used as the unperturbed system and the technique is then described as unrestricted Mø-Plesset to second order (UMP2). Use of large Gaussian basis sets suggests that the limiting UMP2 energies with a complete basis of s, p, and d functions account for 75-84% of the correlation energy. Preliminary estimates of the contributions of basis functions with higher angular quantum numbers indicate that full UMP2 limits give even more accurate total energies.
    Additional Material: 4 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090204
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  • 6
    Electronic Resource
    Electronic Resource
    Smooth interpolation, Fourier transformation, and two-center overlap integrals for numerical atomic orbitals (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 789-795 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A smooth interpolation method for the calculation of Fourier transforms of numerical atomic orbitals is presented and the method is used to calculate two-center overlap integrals. Examples applying various definitions of smoothness are given.
    Additional Material: 3 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090504
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  • 7
    Electronic Resource
    Electronic Resource
    A variational principle for transition and density matrices and approximations to the equations-of-motion (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 825-834 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A general variational principle for transition and density matrices is proposed. The principle is closely related to Rowe's variational treatment of the equations-of-motion method. It permits the simultaneous construction of coupled approximations for two eigenstates, and it is a straightforward extension of the usual variational method.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090507
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  • 8
    Electronic Resource
    Electronic Resource
    The electronic structure of molecules having arbitrary boundaries (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 887-900 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper we discuss an extension of the standard multiple scattered wave method for molecular electronic structure calculations to the case of arbitrarily shaped molecules. A general theory is presented where the difficulties arising from the matching problem across an arbitrary boundary are avoided. The secular equation to determine the energy spectrum is obtained and the wave functions are calculated in all regions.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090511
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  • 9
    Electronic Resource
    Electronic Resource
    Masthead (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975) 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090601
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  • 10
    Electronic Resource
    Electronic Resource
    Operator formalism for forming ket vectors under some constraints (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 969-973 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Reformulation, generalization, and application of Löwdin's symmetric orthonormalization, of orthogonalization of two sets of vectors, and of McWeeny's variational method of a density matrix, etc., by means of an operator for forming ket vectors on which are imposed some conditions, are presented.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090604
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  • 11
    Electronic Resource
    Electronic Resource
    Orbit-orbit molecular integrals over Gaussian orbitals (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 1055-1067 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Analytical formulas are derived for integrals of the orbit-orbit operator in the Breit-Pauli Hamiltonian. The present method differs from an earlier one in the introduction of a new auxiliary function Gn(a) which is an integral of Shavitt's Fm(t) function. A method for its evaluation is discussed and some numerical examples are given.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090612
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  • 12
    Electronic Resource
    Electronic Resource
    Spin projections for even electron systems (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 1109-1112 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new method is presented for obtaining the spin eigenfunctions of 2n electron systems in the spin state S and MS = 0. Using a modified Young operator the function for the state S, MS ( = S) of the system is first projected out. The projected function is then symmetrized over the last n particles and the weight lowering operator Š-S is then applied to it, resulting in a projection of the state S, 0. To within a multiplicative factor, the resulting function is identical with the one resulting from the vector coupling methods.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090616
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  • 13
    Electronic Resource
    Electronic Resource
    Square well model and the functional form for the resonance integral (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 379-381 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090212
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  • 14
    Electronic Resource
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    Corrections to coupled Hartree-Fock theory: the rearrangement effect (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 385-392 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this communication we discuss a method of incorporating corrections to the coupled Hartree-Fock (CHF) formalism by introducing the so-called “rearrangement effect.” In this we take account of the relaxation of the core orbitals when excitations from a starting Hartree-Fock wave function occur. The magnitude of this correction numerically is found to be quite significant for the polarizabilities of two-electron atomic systems, results for which are reported.
    Additional Material: 1 Ill.
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    URL: http://dx.doi.org/10.1002/qua.560090302
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  • 15
    Electronic Resource
    Electronic Resource
    Resolvent technique and Padé approximants in configuration interaction calculations (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 431-443 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A perturbation approach based on resolvent technique and Padé approximants is proposed. The eigenvalue of interest is part of a solution of two nonlinear algebraic equations. The nonlinear equations are arrived at by considering two different expression of the expectation value of the resolvent of an outer projection of the Hamiltonian. The first expression is based on the spectral resolution of the resolvent, and the second one is obtained by a power series expansion analogous to that applied in the derivation of the energy expression in the Brillouin-Wigner perturbation theory. The truncated power series is extrapolated by Padé approximants of type II. The method is tested on a CI calculation of the energy of the lowest 1Σ state of the B2 molecule.
    Additional Material: 2 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090306
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  • 16
    Electronic Resource
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    Variational bounds on transition probabilities (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 479-487 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Complementary variational functionals are derived which impose upper and lower bounds on transition probabilities. These functionals are used to yield bounds in terms of sets of sum rules, and illustrative calculations are presented for hydrogen, helium and krypton atoms.
    Additional Material: 2 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090310
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  • 17
    Electronic Resource
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    Dynamical screening by Σ-electrons in π-electron transitions: Treatment in the equations-of-motion method (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 505-516 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Dynamical screening in π-electron systems is studied by the equations of motion method. By using a partitioning technique on the equations of motion we can obtain simple expressions for the effect of dynamical screening directly on the transition energies and transition moments in π-electron systems. These results are used to study the effect of such screening in the N → V transition in ethylene. This procedure can be used to extend the equations-of-motion method to larger π-electron systems.
    Additional Material: 8 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090313
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  • 18
    Electronic Resource
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    Announcements (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 557-557 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090319
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  • 19
    Electronic Resource
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    Alternant molecular orbitals (amo's) for some organic semiconductors: Ion radical salts from 7, 7, 8, 8-tetracyanoquinodimethane (TCNQ) and chloranil/ para-phenylenediamine (PDC) charge transfer complex (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 1087-1095 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We report an attempt of ab initio computation for the ground-state wave-function of a few organic semiconductors (namely TCNQ salts and the PDC charge transfer complex) for which we show that electrical conduction appears to look strongly like that of a band-gap semiconductor.
    Additional Material: 2 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090614
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  • 20
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    Applications of an optimization technique in submolecular biologyThis paper was presented at the International Symposium on Atomic, Molecular, and Solid State Theory and Quantum Biology held at Sanibel Island, Florida, U.S.A. in January, 1974. (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 393-402 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Some applications of an optimization technique due to Levenberg in theoretical submolecular biology are described. This technique has proved a very useful tool for the generation of three-dimensional structures of molecules having cyclic components or other constrained regions. The generated molecular structures provide the starting point for quantum chemical calculations of great value in solving problems of biological interest. The mechanism of transport of alkali metal cations by valinomycin is one such example and this paper describes briefly how various conformations of valinomycin were obtained using the optimization technique. A variant of the same method has been suggested as a new technique for the detection of topographical similarities between apparently dissimilar molecules which are substrates for the same enzyme or receptor site. The technique is illustrated with a comparison of a tricyclic antidepressant with norepinephrine both of which have been postulated to compete for a common receptor site in the “amine pump” of peripheral adrenergic nerve cell membranes. Another area in which the optimization technique has proved useful is in developing an optimum separable localized bond function method designed for rigorous calculations on large saturated molecules. This method is briefly described.
    Additional Material: 3 Ill.
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    URL: http://dx.doi.org/10.1002/qua.560090303
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  • 21
    Electronic Resource
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    Ab initio calculation of the electronic structure of TCNQ and its ions (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 459-471 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio SCF-LCAO-MO calculations have been performed for TCNQ and its positive and negative ions in various electronic states. A basis set consisting of 412 primitive Gaussian type orbitals contracted to 180 was used in the investigation. The electron density distribution in TCNQ and the negative ions, and the redistribution upon ionization has been illustrated by plotting difference density contour maps. The quinone structure of the neutral TCNQ system undergoes a transformation to a benzenoid structure when electrons are added. Electronic transitions, ionization potentials and electron affinities have also been calculated.
    Additional Material: 7 Ill.
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    URL: http://dx.doi.org/10.1002/qua.560090308
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  • 22
    Electronic Resource
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    Spin-projected EHF method. II. The equations for successive optimization of the orbitals in the many-electron case (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 517-526 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The extended Hartree-Fock equations of the spin-projected scheme are derived in a form suitable for the construction of a surely convergent method of solution using successive optimization of the individual orbitals. The derivation is based on a specific form of the generalized Brillouin theorem.
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    URL: http://dx.doi.org/10.1002/qua.560090314
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  • 23
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    Energy of interaction of two hydrogen atoms using contracted Gaussian type valence-bond wavefunctions (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 1113-1129 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Valence-bond type wavefunctions based on contracted Gaussian atomic orbitals afford an adequate description of the potential of the ground 1Σg+ state of H2 for a wide range of internuclear separations. Semiempirical techniques for scaling the potential curve are evaluated. An efficient method for optimizing non-linear variables in the wavefunctions is explored.
    Additional Material: 4 Ill.
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    URL: http://dx.doi.org/10.1002/qua.560090617
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  • 24
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    Simple relationship between total molecular correlation energies and LMO sizes (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 25-31 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: As an alternative to the density functional approach to estimating total molecular correlation energies, the equation Ecorr=-0.06593 ∑i=1M Ri-0.3916, where Ri=〈r2〉i½ and i runs over the localized molecular orbitals was fitted to 25 STO-3G data points with a root-mean-square error of 0.025 hartree. Other more general equations were tried but no significant improvement was observed in the fit.
    Additional Material: 2 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560190104
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  • 25
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    Quantum mechanical calculations of vibrational transition probabilities in collinear atom-triatom collisions (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 105-112 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum mechanical calculations have been made of vibrational transition probabilities in the collinear collision of an inert gas atom with either CO2 or OCS. The dependence of the transition probability on the relative translational energy and the reduced mass is similar to that found for atom-diatom collisions. The transition P00 → 10 (excitation of the first stretching mode) is much greater than P00 → 01 (the second stretching mode). This is largely due to the difference in frequencies but it has been shown that there is an independent mass factor responsible for this difference.
    Additional Material: 1 Ill.
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    URL: http://dx.doi.org/10.1002/qua.560190110
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  • 26
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    The graph center concept for polycyclic graphsDedicated of Professor Oscar E. Polansky for his enthusiastic support, participation, and promotion of chemical graph theory at the times when such an understanding is decisive. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 61-82 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: While the concept of the graph center is unambiguous (and quite old) in the case of acyclic graphs, an attempt has been made recently to extend the concept to polycyclic structures using the distance matrix of a graph as the basis. In this work we continue exploring such generalizations considering in addition to the distance matrix, self-avoiding walks or paths as graph invariants of potential interest for discriminating distinctive vertex environments in a graph of polycyclic structures. A hierachy of criteria is suggested that offers a systematic approach to the vertex discrimination and eventually establishes in most cases the graph center as a single vertex, a single bond (edge), or a single group of equivalent vertices. Some applications and the significance of the concept of the graph center are presented.
    Additional Material: 3 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560190107
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  • 27
    Electronic Resource
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    Algebraic structure of fermion density matrices. I (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 251-257 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper we define the algebraic structure of a reduced fermion density matrix. We relate the algebraic structure to certain symmetry properties of the reduced density matrix.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560190206
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  • 28
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    Analysis of molecular orbital wave functions in terms of valence bond functions for molecular fragments. I. Theory (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 259-269 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method of expansion of molecular orbital wave functions into valence bond (VB) functions is extended to molecular fragments. The wave function is projected onto a basis of mixed determinants, involving molecular orbitals as well as fragment atomic orbitals, and is further expressed as a linear combination of VB functions, characteristic of structural formulas of the fragment but whose remaining bonds are frozen. Structural weights for the fragment are deduced from this expression. Delocalized molecular orbitals are used as a startpoint, as they are after an ordinary SCF calculation. Wave functions of medium-sized molecules may be analyzed with reasonable storage requirements in a computer.
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    Generation of generalized branching diagram spin functions by Schmidt orthogonalization of spin-paired functions (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 413-426 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The generalized branching diagram (GBD) spin representation is defined as the method of sequentially coupling together a number of subsystem spin eigenfunctions using the general rules of angular momentum coupling. It is shown that any GBD representation may also be obtained by Schmidt orthogonalizing a set of cannonical spin-paired (SP) functions, provided the SP basis is suitably ordered. The ordering procedure used is well suited to computer implementation. This is a generalization of results known in the literature for the Yamanouchi-Kotani and for the Serber spin representations.
    Additional Material: 4 Ill.
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    URL: http://dx.doi.org/10.1002/qua.560190305
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    Molecular orbital treatment of phenylfurans and bifurans (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 383-399 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The molecule-in-molecule method of computation has been applied in a SCF study of the electronic absorption spectra of 2- and 3-phenylfurans and 2,2′- and 3,3′-bifurans. The computed values for the transition energies and band intensities differ for the different isomers and help one to assign the preferred conformer of the studied molecules. Computations were performed on planar as well as nonplanar conformers. The calculated parameters as well as the interaction energy suggest all-planar configuration for the studied molecules. A model potential for the sigma framework for the ortho-hydrogens is considered. The calculated steric repulsion energy is negligible compared to the π delocalization. The height of the rotational barrier was larger for 2-phenylfuran than for 3-phenylfuran, and larger for 2,2′-bifuran than for 3,3′-bifuran. This result is in accord with predictions based on the extent of “π” conjugation in these molecules.
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    Theoretical study of excitation energies of some CoF6n- complexes (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 451-461 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio LCAO SCF MO calculations are carried out on the ground state and d-d transition states of CoF64-, CoF63-, and CoF62- complexes with a basis set of more than double-zeta quality. To obtain a better description for the excitation energy of d-d transition states, a ligand field configuration interaction calculation is performed. The calculation is improved further by taking into account the correlation energy in the central metal atom and it gives good results for the observed excitation energies. Especially, the excitation energies for the states which have the same configuration as the ground state agree with observed ones within about 1 kK. The excitation energies of several charge transfer states in the CoF62- complex are also computed at the level of SCF MO calculation and the assignments are made for the four strong bands observed in the energy region higher than the weak d-d bands.
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    Variational treatment of the ground state of the hydrogenic atom using the trial function φ = A exp(-αrν) (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 483-484 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 1 Tab.
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    URL: http://dx.doi.org/10.1002/qua.560190311
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    Algebraic structure of fermion density matrices. II (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 505-514 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The properties of the algebraic structure of fermion density matrices are studied. The algebraic structure of a density matrix leads to a more varied and detailed classification scheme than that offered by the usual shell structure approach. Investigation of the algebraic structure of fermion density matrices by the methods of algebraic topology leads to a classification scheme based on Betti numbers.
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    Masthead (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981) 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560200101
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    Complex formation between tryptophan-containing peptides and nucleic acids: Fluorescence decay studies using synchrotron radiation (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 41-48 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Synchrotron radiation has been used to determine the fluorescence decay parameters of a tryptophan-containing oligopeptide, Lys-Trp-Lys, bound to nucleic acids. All fluorescence decay curves can be fitted by a sum of two exponentials. The two lifetimes very likely correspond to two conformational states of the oligopeptide. The mean fluorescence lifetime of the peptide is not markedly affected upon binding to nucleic acids even though the fluorescence quantum yield is strongly reduced. A model is presented that accounts for the existing fluorescence data: two consecutive complexes are formed both involving electrostatic interactions. In one of the complexes the tryptophyl ring is stacked with the nucleic acid bases and its fluorescence is completely quenched. The other complex emits a fluorescence having characteristics which are similar to those of the free peptide.
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    Matrix isolated clusters and microcrystals (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 1099-1103 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: After emphasizing the importance of absorption spectra of metal clusters, with special reference to alkali halide IR absorption, the equilibrium configurations and the binding energies of alkali halide clusters are discussed in terms of a very simple two-body interaction.
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    Molecular aspects of the hydration process in a globular protein (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 1133-1135 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    URL: http://dx.doi.org/10.1002/qua.560190622
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    Specificity and molecular mechanism of abortificient action of prostaglandins (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 167-178 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The paper reports comparison of electrostatic charge and energy distribution on the basis of the CNDO/2 method for six forms of prostaglandins-PGF2α, PGF1β, PGE1, PGE2, PGB1, and PGA1-having diverse physiological action. The isopotential mapping done in three dimension showed that the lower value of electrostatic potential and proximity of the two low energy regions around O9 and O11 in PGE2 and PGF2α is probably responsible for their higher abortificient activity. We also compare here the variation of the long- and short-range interaction between ring-chain and chain-chain portion of different forms and compared them with the variation in their action.
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    URL: http://dx.doi.org/10.1002/qua.560200116
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    Magnesium and calcium cation-ligand interactions within the pseudopotential approach. II. Cation-GABA interactionsSupported in part by the Polish Academy of Sciences within Project PAN-09.7.1 and Conacyt PNCB-1615, México. Presented in part at the Sanibel Quantum Biology Symposium (1979) held in honor of A. Pullman and B. Pullman. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 463-475 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We performed ab initio pseudopotential and CNDO calculations on γ-aminobutyric acid (GABA) and its Ca2+ and Mg2+ clathrates. We were particularly interested in the rotational barrier existing between two extreme conformers of GABA and its modification upon metal complexing. We found that the pseudopotential method predicts a coordination of the ions to GABA and that this coordination inverts the rotational barrier observed for the isolated molecule. We also looked into the adequacy of CNDO for the study of this type of coordination and found several shortcomings in its predictions. The biological implications of these findings are discussed and a hypothesis on the role of a GABA-Ca2+ complex is presented.
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    Masthead (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981) 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560190401
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    Direct energy minimization of self-consistent electron pair by an orthogonal transformation of the basis (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 493-500 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the frame of direct minimization of MC-SCF energy by an orthogonal transformation of the basis, a new procedure for iteratively solving the orbital equations is presented, in which the orthogonal matrix is calculated by the singular value and vector decomposition of a nonsymmetric matrix. The procedure is applied to the self-consistent electron pair theory and tested on LiH molecule. Convergence rate and numerical stability are found to be satisfactory.
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    Basis set generation for the SCF calculationThis work was supported in part by the Institute of Low Temperatures and Structure Research, Polish Academy of Sciences under Contract No. MR-I.9.4.3/1. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 545-551 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method for basis set generation for SCF calculations is proposed. Using SCF orbitals and orbital energies obtained in the extended basis set the Fock operator can be expressed as its spectral resolution. The sum of differences between occupied orbital energies and corresponding eigenvalues obtained by the diagonalization of this operator in the new smaller basis set is a criterion of the quality of this new set. The present method consists of the minimization of this sum by changing the parameters that determine the new basis functions. An example of the optimization of the different Gaussian basis sets for the LiH molecule is described.
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    Three-body potential energy terms for methane trimers (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 637-648 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An SCF LCAO MO calculation on the methane-methane-methane system is presented, in order to analyze the deviation from pairwise additivity of the interaction energy. Three-body terms are shown to be remarkably similar to those of noble gas trimers both in magnitude and in their dependence on the geometrical arrangements of the three molecules.
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    Information theory interpretation of the Pauli principle and Hund rule (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 673-679 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Making use of different information measures, the Pauli exclusion principle and the first Hund rule were found to be related to a trend toward acquiring a maximum information content of the atoms and molecules, and more generally, for any fermion system. The bosons conversely always have a minimum (zero) information content with respect to the permutation symmetry of their wave functions. Some new interpretations of the Pauli principle are presented.
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    Self-Consistent APW-k · p method. I. Theory (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 681-691 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A first principles method based on an APW-k · p band structure calculation is derived in order to obtain the self-consistent eigenenergies, crystal potential, and electronic density. The simplicity and extensions of the method are discussed, including comparison with the results obtained by the use of the Chadi and Cohen special points technique.
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    Erratum (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 719-720 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 1 Ill.
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    URL: http://dx.doi.org/10.1002/qua.560190422
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    Optical oscillator strengths for isoelectronic ions of nitrogen (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 729-734 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An analytic atomic active electron model potential adjusted to experimental single-particle energy levels is used to generate wave functions for the valence and excited states of O1+, F2+, Ne3+, Na4+, and Mg5+. Using these wave functions in conjunction with the Born approximation and the LS-coupling scheme, we calculate optical oscillator strengths for excitations from the 1s22s22p3(4S3/2) ground state. The results are compared to experimental data and other calculations. Systematic trends along the isoelectronic sequence are discussed.
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    Coupled perturbation theory within the antisymmetrized product of separated geminals (APSG) framework (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 763-769 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A coupled perturbation theory for the antisymmetrized product of separated geminals (APSG) approximation is derived. The variational principle for the APSG wave function in an external oscillating field is employed and a set of equations of the form analogous to the normal RPA is obtained. At this level the reduced resolvent in the form of a spectral expansion is written and it is used for the evaluation of the second-order properties.
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    Thermal dissociation of 1,2-dioxethane. I. Charge density distribution along the reaction path and in different HF solutions (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 805-819 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A charge density distribution study, based on ab initio SCF-6-31G wave functions, on the optimized geometry of 1,2-dioxethane indicates its high instability which results from (i) the high ring strain, (ii) the large amount of charge contained on the nonbonded sides of the oxygen nuclei, and (iii) the weak binding character of the charge density in the O—O bond region. The redistribution of the charge density when 1,2-dioxethane undergoes change in its nuclear configuration has been discussed. This redistribution of charge along the reaction path (the dissociation of 1,2-dioxethane to formaldehyde products) shows clearly the preceding nature of the electron cloud. The characteristic features of the charge density distribution of the two Hartree-Fock solutions to which the SCF procedure converges have been analyzed and discussed.
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    Dynamic nonlinear Jahn-Teller effect of the type E ⊗ ∊ (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 859-871 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By applying the projection operator method it is shown that the complicated Hamiltonian of a E ⊗ ∊ JT system with nonlinear coupling coefficients can be written in terms of two Hamiltonians which are simple to handle and transform according to irreducible representations E, A1, and A2 of C3v point group. A variational approach is then used to calculate the ground state energy, using the Hamiltonian that transforms according to E, as an explicit function of the linear and nonlinear coupling parameters. The energies calculated in the strong coupling limit are finally compared with the corresponding previously calculated energies.
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    Multichannel quantization and the static stark effectWork supported in part by Unité d'Enseignement et de Recherche 52, Université Pierre et Marie Curie. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 901-906 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A coupled channel formulation for the static Stark effect on the hydrogen atom is used to obtain directly the complex resonance energies through an iterative matching procedure. The formulation makes use of a complex coordinate. This solves the initialization problem in a very simple way, since the boundary conditions can be those used for bound states. A comparison is made with the results of Reinhardt and collaborators who expand the complex rotated resonance wave function in a basis of integrable functions.
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    Energy calculations on helical polypeptides: Structure of polyglycine II (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 347-356 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Single chain and packing energy calculations have been made on polyglycine (threefold and fourfold helical structures) with interchain NH…O hydrogen bonds. In conformation A of polyglycine, in which the NH groups point away from the helix axis and the CO groups are nearer to the helix axis, the conformational energy is nearly the same for threefold and fourfold structures. However, the minimum energy conformation corresponds to a threefold structure of polyglycine with peptide configurations in conformation B in which the CO groups point away from the helix axis and NH groups are nearer to the helix axis. This structure is consistent with the polyglycine II x-ray diffraction data.
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    Theoretical studies of photo-oxidative cleavage reactions of nitrogen-activated C—C double bonds of enamines, indoles, and tryptamines (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 393-406 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ab initio MO and semiempirical multireference (MR) CI calculations were carried out to elucidate the energy differences between peroxy 1,4-diradical (DR) and 1,4-zwitterionic (ZWI) intermediates, which play crucial roles in photo-oxygenation reactions of nitrogen-activated C—C double bonds of enamines, indoles, and tryptamines. It is found that ZWI is more stable than DR in the case of electron-rich enamines. Protic solvents such as methanol are highly effective for the stabilization of ZWI by hydrogen bondings. From the present theoretical results, it is concluded that tryptophane undergoes the photooxidative cleavage reaction to give formylkynurenine under a specific condition, where polar solvents or catalysts sufficiently stabilize the ZWI state for the species.
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    Ionophores and channels (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 461-478 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The present state in the chemistry of peptides and proteins capable of transporting ions across biological and model membranes have been reviewed. The mechanisms of action of peptide ionophores valinomycin and enniatin and also the channel-forming peptide gramicidin-A have been discussed on the basis of spatial structure and dynamic conformational properties of the compounds. Recent progress in the studies of bacteriorhodopsin, cholinergic receptor from postsynaptic membrane, and sodium channel from the excitable nerve membrane, the integral membrane proteins acting as proton or metal ion channel formers is also discussed.
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    Effect of change of water structure on the phase transition of liposomes of dipalmitoyl phosphatidylcholine (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 495-504 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The role of water structure around model membrane systems (e.g., liposomes) on phase transition of the lipid dipalmitoyl phosphatidylcholine was investigated. Water structure was altered by changing pH and by addition of solutes which are known breakers and makers of water structure. The structure makers broadened the zone of transition and changed the overall phase transition profile, while the main effect of structure breakers was to cause a shift in the transition temperature. The observed variation of Chapman transition temperature and broadening of zone of transition with varying pH is discussed in terms of altered water structure around the membrane-aqueous interface. Binding studies with the dye 1-anilino-8-napthalene sulfonate showed that structure makers or breakers did not bind to the liposome surface directly. Thus the structure makers and breakers act on the membranes perhaps by altering the water structure differentially. Possible associated mechanisms of action are discussed.
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    Interaction of the mutagenic base analogs O6-methylguanine and N4-hydroxycytosine with potentially complementary bases (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 543-554 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Infrared spectroscopy has been employed to study possible base pair interactions, in nonpolar media, between O6-methylguanine and uracil, cytosine and adenine; and between derivatives of N4-hydroxycytosine and adenine. The association constants of O6-methylguanine with uracil, cytosine, and adenine are well below 1M-1, whereas those for interaction of 1-methyl-N4-methoxycytosine and its 5-methyl derivative with adenine are identical, K = 14M-1. The significance of the latter finding is discussed in relation to the conformation of the exocyclic N4-methoxy group. Quantum chemical calculations, with the aid of the perturbation method, were carried out for the interaction of O6-methylguanine with uracil, cytosine, and adenine, to establish the most energetically favoured configurations for interactions of the free bases, and of the same base pairs in the B form of DNA. The role of the conformation of the exocyclic  - OCH3 group in O6-methylguanine is discussed. The relevance of both the experimental and theoretical results to mutagenesis by O6-methylguanine and N4-hydroxycytosine is examined.
    Additional Material: 4 Ill.
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    Masthead (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981) 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560200301
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    Ab initio molecular orbital calculation of fe-porphine with a double zeta basis set (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 843-859 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An ab initio LCAO SCF MO calculation was performed on planar Fe-porphine with a double zeta basis set consisting of 300 CGTO's. SCF wave functions of several states of Fe-porphine and its cation were obtained. The net charge of Fe is in the range of 1.39 to 1.53. The highest occupied orbital is ascertained to be a pure porphine π-MO, 1a1u. The calculated ionization potentials of the two highest occupied orbitals, 1a1u and 5a2u are 5.98 and 6.43 eV, respectively. They are in good agreement with experiments. The role of the porphine macrocycle on the oxidation of Fe is discussed in terms of gross atomic populations and with contour maps of the density difference.
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    Limiting behavior of the ratio of 〈r12-1〉 and 〈r1-1〉 in the helium sequence (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 887-889 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The limiting of the 〈r12-1〈/〈r1-1〈 ratio in the He sequence is critically examined at different levels of approximations leading to some interesting results.
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    Monte-Carlo simulation of water solvent with biomolecules: Serines with reaction-field correction (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 921-926 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Along the lines of previous work [S. Romano and E. Clementi, Gazz. Chim. Ital. 108, 319 (1978); Int. J. Quantum Chem. 14, 839 (1978); 17, 1007 (1980)], we carried out Monte Carlo simulation on serine-water clusters (the neutral molecule and two conformers of the zwitterion) surrounded by an appropriate dielectric continuum simulating the bulk solvent. Results for clusters in vacuo and in the dielectric continuum were compared; similarities and differences could be qualitatively interpreted as produced by competition among different factors.
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    Self-Consistent APW-k · p method. II. Application to NaCl (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 933-949 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The self-consistent APW-k · p method is utilized to obtain the band structure of NaCl in the “muffin-tin” approximation. Qe have investigated the convergence of many intermediate results, e.g., crystalline potential, matrix elements of the momentum operator, and energy eigenvalues at the Γ point. The summation in reciprocal space, included in the definition of the matrix D of the theory, is performed by direct sum and also by a special points technique. For the convergence criteria used, the results converged after five iterations.
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    Electron impact excitation cross sections for O II (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1073-1076 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Generalized oscillator strengths and integrated cross sections from threshold to 1 keV are calculated in the Born approximation for the electron impact excitation of O II.
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    Calculation of one-electron properties using limited configuration interaction techniques (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1067-1071 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: One-electron properties may be evaluated by configuration interaction methods using analytical differentiation of the total energy with respect to an external perturbation parameter. Dipole moments are reported using such a method for CO and H2CO. Inclusion of single substitutions does not change calculated dipole moments appreciably with this method. The differences between this method and the direct evaluation of an expectation value are discussed.
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    A new look at correlations in atomic and molecular systems. I. Application of fermion monte carlo variational methodThis work was partially supported by the Applied Mathrmatics Programme of the U.S. Department of Energy under Contract No. DE-AC02-76ER03077 and the National Science Foundation under Grant No. CHF-8010719. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1107-1119 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We are engaged in research directed toward the development of compact and accurate correlation functions for many-electron systems. Our computational tool is the variational method in which the many-electron integrals are calculated by Monte Carlo using the fermion Metropolis sampling algorithm. That is, a many-fermion system is simulated by sampling the square of a correlated antisymmetric wave function. The principal advantage of the method is that interelectronic distance rij may be included directly in the wave function without adding significant computational complexity. In addition, other quantities of physical and theoretical interest such as electron correlation functions and representations of Coulomb and Fermi “holes” are very easily obtained. Preliminary results are reported for He, H2, and Li2.
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    A hybrid technique of orthonormality constrained orbital optimization in SCF calculations (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1165-1177 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A recently proposed orthonormality constrained orbital optimization technique is operationally modified further by coupling it to a gradient biased method, namely the steepest descent procedure of McWeeny. The hybrid technique developed in this way is shown to have better convergence properties in closed and unrestricted open-shell calculations. The technique can be adapted to MCSCF procedures as well. The important role played by "orbital symmetries" in the operation of the method is analysed. Similarities and differences of the present method with the orthogonal gradient method are pointed out. Possible avenues of circumventing convergence difficulty that one may encounter in pathological cases, particularly in ab initio calculations involving extended basis set, are suggested.
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    Catecholamine interaction with anionic sites - A model study (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1225-1231 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Interactions of catecholamines with acidic sites in the biophase are likely to be involved in the control of the receptors activity as well as in storage and transport mechanisms. In view of the importance of the phenomena a model study of ethanolamine-phosphate complexes was made. The electrostatic interaction energy surface was calculated in the charge density multipole expansion approximation with terms up to quadrupole. The consecutive minimal energy conformation shows the importance for the interaction with the biophase of the catechol ring steric and electronic relation to the side chain.
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    Variants of Rayleigh-Schrödinger perturbation theory - a new look (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1273-1284 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Several useful “redefined zero-order Hamiltonian” variants of the Rayleigh-Schrödinger perturbation theory are derived by exploiting the freedom of choice for the orthogonality integral between zero- and first-order wavefunctions. It is found that the more common Hamiltonian repartitioning schemes follow quite naturally, as a consequence of certain consistency requirements. The strategy adopted may as well be employed to derive various newer and profitable zero-order Hamiltonians depending on the nature of the problems. This implication is strengthened by demonstrating the calculational success of one such derived scheme. Feenberg's “scale-changed” Hamiltonian approach is also reinterpreted in the present context.
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    Catalysis in chemistry and biochemistry. Theory and experiment-jerusalem symposia on quantum chemistry and biochemistry. Vol. 12. Edited by B. Pullman. Reidel, dordrecht, 1979. Prie (cloth): $85.00. ISBN 90 - 277 - 10399 - 2. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1331-1331 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    Reactive Intermediates in the Gas Phase, Generation and Monitoring. Edited by D. W. Setser. Academic, New York, 1979. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1333-1334 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    URL: http://dx.doi.org/10.1002/qua.560200620
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    Ab Znitio Calculations-Methods and Applications in Chemistry. By Peter CBrsky and Miroslav Urban. Lecture Notes in Chemistry No. 16. Springer-Verlag, Berlin, 1980. ISBN 3-540-10005-9 (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1334-1335 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560200622
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    Direct determination of improved contraction coefficients by a least-squares approach (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 63-71 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A simple method is presented for the construction of contracted Gaussian basis sets with little or no energy-optimization. The contraction coefficients are fitted by a least-squares procedure to the orbital expansion coefficients of the completely decontracted basis. The method is applied to the construction of minimum basis sets of first-row atoms from (6s, 3p) uncontracted atomic basis sets, and of [6s, 4p] contracted bases from (12s, 8p) uncontracted bases of second-row atoms. The results are better than using the expansion coefficients directly and are usually comparable to fully energy-optimized bases.The method can also be used to generate balanced atomic contraction coefficients from molecular calculations. This is shown with a (7s, 3p) and a (6s, 3p) basis, both contracted to a minimum basis. The contracted basis sets are employed in several small molecules, and the results are compared with calculations done with the decontracted bases and with contracted bases where the contraction coefficients were energy optimized in the molecules.
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    Molecular orbital studies on nucleoside antibiotics V. Conformation of pyrazofurins (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 129-138 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Conformational properties of pyrazofurins, which were previously designated as pyrazomycins in both β- and α-anomeric forms, have been investigated by the PCILO method. The results indicate that the most preferred conformation for β anomer is anti-gg, while that for α anomer is syn-gg when intramolecular hydrogen bonding between sugar and the base is allowed. However, in the absence such hydrogen bonding, which mimicks the situation in aqueous solution, both β and α pyrazofurins show exactly similar preference for anti-gg conformation. The biological significance of this result has been discussed. Further the β anomer is energetically more favorable than the α anomer. This result is in agreement with the experimental observations, which indicate that β pyrazofurin is more populated than a pyrazofurin in aqueous solution at room temperature.
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    The electrostatic molecular potential of tRNAPhe. V. The influence of counterion binding on the potential and the steric accessibility (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 171-183 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An investigation is carried out of the influence of counterions bound to yeast tRNAPhe on the electrostatic potential and steric accessibility of this macromolecule. Two types of cations are considered, the Mg2+ ions located in the crystal of tRNAPhe, with their waters of hydration, and Na+ ions, which are positioned by theoretical estimation. Possible effects of the counterions on the chemical reactivity of tRNAPhe are pointed out.
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    Hydrogen-bonding geometry and patterns in carbohydrates and amino acids (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 231-239 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The hydrogen-bond geometry observed by neutron diffraction of 24 carbohydrate and 32 amino acid crystal structures is analyzed and compared. Of the 100 O—H———O bonds in the carbohydrate structures, 25 were three-centered (bifurcated). This bigamous behavior is rationalized in terms of the 25% greater number of acceptor oxygens than donor hydroxyls and the need to preserve the “cooperative effect.” The predominant hydrogen bonds in the amino acids are the zwitterion type , 64 out of a total of 145. Of these, 51 are three-centered. Again the rationale appears to be an equilization of donor and acceptor functions, since each carboxylate group generally accepts between four and six hydrogen bonds.
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    An electron spin resonance investigation of amine models for the protein-methylglyoxal interaction (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 265-270 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The dicarbonyl methylglyoxal reacts with the lysine residues of proteins to give brown colored products with a small oxygen-dependent free radical content. Electron spin resonance (ESR) experiments employing ethylene diamine as a model for protein lysine residues are reported. The prevention of imine formation between methylglyoxal and the amine models either by pretreatment of methylglyoxal with glutathione or by methylation of the amine led to brightly colored reaction products and a much higher radical content. From an analysis of the ESR spectra it is clear that the reactions between methylglyoxal and the simple model amines developed far beyond those in the protein-methylglyoxal systems. It is proposed that this difference is accounted for by the enormous steric effects of the proteins. The relevance of the observations to the “browning” reaction in foods is briefly discussed.
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    Electrical properties of proteins as a function of hydration and NaCl content (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 307-316 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Steady-state conductivity and dielectric measurements in the range of 10-5 Hz to 33 GHz are reported for bovine serum albumin and lysozyme as a function of hydration and NaCl content. The electrical properties are understandable in terms of the existence of charge carriers whose hopping-type transport process is directly influenced by the nature of the protein-water interaction. These mobile charges are considered to be protons originating from ionizable carboxylic groups.
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    Hunting of strange electronic states and structures in solids and biopolymers (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 347-357 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is outlined how the authors arrived at the existence problem of the intermediate states (IS) possibly appearing in bounded crystals with perfect bulk structure and of certain zig-zag states (ZZS) in almost periodic (even disordered) biopolymers. Earlier results are summarized and commented. An example is given for how to enhance the appearance probability of ISS. It is shown that within a narrow critical interval, the width of which is about the eighth of the average separation of the bulk states in the k space of the finite linear chains, any state becomes an his (almost IS), which is very similar to the IS and approaches it continuously. Estimating the effects of in-plane and in-terplane vibrations of stacked aromatic planar compounds on the delocalized π-electron structures, it is concluded that the valence modes have a strong effect on the in-plane π-electronic systems, but a very small one on the interplane π-electronic interactions. The longitudinal acoustical modes of finite polynucleotide DNA models and their root mean square amplitudes are estimated by the method of Peticolas. According to the results obtained, DNA-like and layered graphitelike systems seem to be the probable host systems of 1%. if they exist at all. The appropriateness of the recursion method is discussed to search for unusual electronic states and structures. Such studies are the first unsteady but exciting steps toward the construction of the molecular computers.
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    Ab-initio molecular orbital study of the cis/trans conformations of the peptide bond (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 117-127 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab-initio molecular orbital (MO) calculations on the model peptide, N-methylacetamide (NMA), protonated N-methylacetamide (p-NMA), and two natural dipeptides, glyclyglycine (Gly-Gly) and alanylalanine (Ala-Ala), are reported. Calculations at the STO-3G. 3-21G. and 4-31 G levels account for the predominance of the trans conformation in globular proteins. By use of p-NMA as a model precursor, the formation of the peptide bond is studied by the methods of molecular quantum mechanics. These calculations lead to the conclusion that the trans conformation should predominate, in agreement with the crystal structural data on globular proteins. In order to reduce the amount of computer time required for what are evidently the first ab-initio MO calculations on natural dipeptides, force-field calculations have been employed to obtain the conformational potential energy maps.
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    Molecular calculations with the nonempirical ab-initioMODPOT/VRDDO/MERGE procedures. XIV. 2,6-dimethyl-N-nitroso morpholine and its α-OH isomers: Conformations and electrostatic molecular potential contour maps (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 149-160 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab-initio MODPOT/VRDDO/MERGE SCF calculations were carried out on 2,6-dimethyl-N-nitroso morpholine and on four isomers of α-hydroxy substituted derivatives. The NNO bond angle is found to be 1135°, in agreement with that observed in dimethyl nitrosamine. The two methyl groups are found to be most stable in the equatorial position. The axial position is found to be the most stable orientation for the α-hydroxy group in both the syn and the anti isomers. This is in agreement with the observed axial orientation of straight chain alkyl substituents at the α position in N-nitroso piperidine. An investigation was made on the effects of internal rotation in the parent compound. A 90° rotation about the N—N bond raises the energy ∼.0526 a.u. or ∼33 kcal/mol. In the 90° orientation, population analysis shows a decrease of ∼0.1 e in the gross atomic population (GAP) of the nitroso oxygen and in the total overlap population for the N—N bond. There is a corresponding increase of ∼0.05 e in the GAP on the amino nitrogen. The GAP on other heavy atoms and overlap in other bonds show little effect from internal rotation of the nitroso group. Electrostatic molecular potential energy contour maps indicate differences as a function of conformation.
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    Effects of N-protonation on the electronic structure of morphine and naloxone (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 201-219 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The FSGO molecular fragment technique has been employed to perform ab-initio SCF-MO calculations on morphine and naloxone in the free-base and N-protonated forms. Particular features of electronic structure which have been investigated are molecular-orbital (MO) density distributions, energies and ordering, as well as the correlation of specific orbitals between different molecular species. It has been found that high-energy occupied and low-energy unoccupied MOS are centered on the aromatic moiety of both drugs, enabling the ring to act either as an electron donor or as an acceptor in a charge-transfer interaction. Comparison of corresponding MOs in the free base and the acid cation of both morphine and naloxone demonstrates that the field of the cationic head causes a dramatic downward shift in orbital energies. Thus in the N-protonated drugs the acceptor capability of the benzene ring is greatly enhanced at the expense of its suitability as a donor. Furthermore, the allyl group of naloxone becomes highly activated as an electron acceptor through N-protonation. Investigation of the molecular electrostatic potential of the free-base species has revealed preferred avenues of approach for electrophilic and nucleophilic entities. However, the N-protonated species shows no regions of attraction for electrophiles. In both the free base and the acid cation, the vicinities of the nitrogen atom and the 3-hydroxy group are found to be favorably disposed for electrostatic interactions with receptor entities possessing the proper charge or polarity. Based on the findings with regard to electronic structure, a simple model has been suggested to explain the binding of morphine and naloxone at the opioid receptor.
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    1H nuclear relaxation study of the aniline-binding site in human hemoglobin (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 257-264 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Hemoglobin-catalyzed hydroxylation of aniline may be taken as a model for similar reactions catalyzed by cytochrome P-450. Using ultraviolet-difference spectroscopy and 1H nuclear relaxation techniques, the binding of aniline to hemoglobin was examined. From the magnitude of paramagnetic effects of ferric iron on aniline protons, using the correlation time determined from the magnetic field dependence of water proton relaxation rates, aniline was found to bind to methemoglobins such that the aromatic protons are 8.5 ± 0.7 Å, away from the high-spin Fe3+. A mode of binding is proposed where the aniline molecule is hydrogen bonded to the distal histidine of hemoglobin.
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    Structure of DNA oligonucleotides (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 277-285 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The solution conformations of two DNA octanucleotides, (GGAATTCC)·(GGAATTCC) and (AAAGCTTT)·(AAAGCTTT), have been investigated by theoretical calculations of NMR shifts. The calculations of proton chemical shifts have been made, taking into consideration the ring current effects and the atomic magnetic anisotropies of the bases. The computed shielding constants for B-DNA, alternating B-DNA, the Levitt propeller-twisted model and the Dickerson propeller-twist model (based on crystallographic data) have been compared with experimentally available shifts. For the (AAAGCTTT)·(AAAGCTTT) double helix the experimental data are available only for the exchangeable protons HN1 and HN3; thus a complete and detailed evaluation is impossible for this system. For (GGAATTCC)·(GGAATTCC) the results indicate that the A·T pairs are propeller twisted à la Levitt and Dickerson.
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    Exponential transformation of molecular orbitals. II. General formulation for UHF calculations and application to diatomics and molecular fragments (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1285-1300 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The exponential transformation of the molecular orbitals, that has been previously used to achieve a process with a convergence of quadratic quality in SCF closed-shell calculations [J. Chem. Phys. 72, 1452 (1980)] has been extended to UHF determinantal wave functions built from different orbitals for different spins. Explicit formulas are given for the first and second derivatives of the energy to be varied. The method is illustrated by UHF calculations for systems described as standard singlets (Li2 and F2) or triplets (NH) at the RHF approximation level, as well as for CH, CH2, CH3 molecular fragments in their valence states.
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    Chime quantiwue structural et ét éléments de spectroscopie théorique. By A. Julg. Office des publications universitaires, Alger, 1978. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1331-1332 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560200616
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    Electrons and Phonom in Layered Crystal Shuctures Edited by T. J. Wietling and M. Schluter. Physics and Chemistry of Materials with Layered Structures, Volume 3 D. Reidel, Dordrecht and Boston, 1979. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1332-1333 
    Details
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560200618
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    Development of a flexible intra- and intermolecular empirical potential function for large molecular systems (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 1-47 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The development of a flexible intra- and intermolecular empirical potential function is described, which is designed for investigating the geometric structure of large molecular systems. The intramolecular components in the potential consist of harmonic bond stretching and angle bending terms, out-of-plane deformation terms, and torsional terms; intermolecular components include nonbonding, hydrogen bonding, and electrostatic terms. Bond lengths, angles, and torsional angles are predicted to within 2% of experiment, with most cases being within 1%. The suitability of the intermolecular potential was tested by crystal packing calculations; in all cases the results obtained were in excellent agreement with experiment.
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    A theoretical study of the selective alkali and alkaline-earth cation binding properties of valinomycin (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 109-116 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In an attempt to account for the selectivity displayed by valinomycin with respect to the binding of alkali metal cations, theoretical computations were performed of the interaction energies of this macrocyclic carrier with Na+, K+, Rb+, and Cs+. Subtracting from these interaction energies the corresponding dehydration energies of the cations yields a set of values of the energy balance, the ordering of which follows the ordering of the binding constants measured experimentally in polar solvents. The possibility of extending the procedure to the alkaline-earth cations Mg2+ and Ca2+ is examined.
    Additional Material: 1 Ill.
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    URL: http://dx.doi.org/10.1002/qua.560200709
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    Ab-initio calculations of charge transfer interactions involving ascorbic acid and its metabolites (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 81-93 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ascorbic acid enhances the free radical electron spin resonance signal obtained when methylamine interacts with methylglyoxal. Previous ab-initio calculations have shown that methylglyoxal and other ketoaldehydes may act as possible electron acceptors in Szent-Györgyi's theory of cancer. Ascorbic acid is also known to be involved in cancer.The ab-initio SCF method has been used to study the electronic structure of ascorbic acid and its metabolites. The bulk of the calculations involved the use of α-hydroxytetronic acid as a model for ascorbic acid, and related compounds as models for the ascorbyl radical and dehydroascorbic acid. Complete geometry optimizations by the force method were carried out for the model compounds, using an STO-3G basis set.To obtain an estimate of possible charge transfer involving these molecules, ab-initio “supermolecule” calculations were carried out using formamide and glyoxal. A large number of planar and stacked orientations were considered The anion acts as a substantial donor in many of the stacked conformations, but the charge transfer is rather small in all these systems.
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    URL: http://dx.doi.org/10.1002/qua.560200707
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    Implications of aminoacyladenylate conformations in the prebiotic polypeptide synthesis (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 139-148 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Aminoacyladenylates play a central part in both protein enzymatic and polypeptide prebiotic synthesis. Previous general studies on aminoacyladenylate conformations were extended to some aspects related to polypeptide prebiotic synthesis. Major conclusions drawn from these quantum mechanical PCILO calculations are: (1) In the presence of an ammonium group the glycylphosphate system forms a double seven-membered ring. This folded conformation possesses an important rigidity. This occurs in neutral or acidic solutions. It agrees with experimental observations showing that there is no polymerization in this case, in the absence of catalyst. Thus the catalytic part of montmorillonite clays, which can break the ring by compensation of the anionic and cationic charges, can be understood. (2) When the amine group remains in its neutral form (in basic solutions), numerous stereo structures are allowed for the glycylphosphate stem, among which a ring of weak stability. This is still in good agreement with the observation of polycondensation at high pH without catalyst. (3) The phosphate linking system is flexible enough to allow the extension of the polypeptide chain between the clay layers. This is in accordance with the mechanism proposed by Paecht-Horowitz in which the phosphate is locked on the edge of the montmorillonite sheet.
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    Manifold theory of multidimensional potential surfaces (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 185-196 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Local coordinate systems are introduced into open sets of topological spaces, defined for the nuclear configuration space R of polyatomic nuclear systems. The open sets are directly related to common chemical concepts, such as chemical structure, reaction mechanism, and stability of reaction paths. A topological model of molecules and chemical reactions is a generalization of the geometrical model, and is particularly suitable to account for the nonrigid nature of chemical structures. The coordinate neighborhoods defined on R and on its submanifolds represent the extent and natural limits for partial analyses of multidimensional potential surfaces.
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    Proton transfers in hydrogen-bonded systems V. Analysis of electronic redistributions in (N2H7)+See references [1-5] for previous papers in this series. (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 221-229 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The transfer of the central proton between the two NH3 units of (H3NHNH3)+ is studied using the 4-31 G basis set within the ab-initio Hartree-Fock formalism. Electron density difference maps are constructed which clearly indicate electronic redistributions which accompany the half-transfer of the proton from its equilibrium position (NH—N) to the midpoint of the hydrogen bond (N—H—N). The overall loss of electronic charge from the proton-accepting molecule originates in three distinct regions of space, while a density buildup of smaller magnitude is observed in a characteristic region centered about the N nucleus. Similar regions are noted for the proton-donating molecule, although the changes are reversed in sign. A partitioning of the total density changes into contributions from the various molecular orbitals demonstrates that the a1 orbitals are associated with density shifts along the H-bond axis. Changes in the N lone pairs are attributed chiefly to the (5a1,6a1) pair and are somewhat attenuated by opposite shifts involving the (3a1. 4a1) pair. Orbitals of e symmetry lead to polarizations of the NH bonds and density shifts perpendicular to the H-bond axis.
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    NMR probes of the spatial arrangement of substrates at the active site of creatine kinase (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 247-256 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To study the arrangement of substrates at the active site of creatine kinase, we have measured the paramagnetic effects of CrADP, an exchange-incrt paramagnetic analog of MgADP, on the nuclear spin lattice relaxation rates 1 /T1 of the protons of water and the protons and phosphorus nucleus of P-creatine in the presence and absence of rabbit muscle creatine kinase. Relaxivity titrations measuring the paramagnetic effect of CrADP on 1/T1 of water protons at several concentrations of the enzyme in the presence of P-creatine were used to study the binding of CrADP to the enzyme·P-creatine complex. The existence of a ternary enzyme·CrADP-P-creatine complex was confirmed by observing the paramagnetic effects of enzyme-bound CrADP on the 1 /T1 of the 31P nucleus and protons of P-creatine. From the magnitude of paramagnetic effects arising within the enzyme·CrADP·P-creatine complex, using the electron spin relaxation time estimated from the magnetic field dependence of 1 /T1 of fast exchanging water protons, a Cr3+-phosphorus distance of 6.0 Å, and Cr3+-proton distances of 11 and 12 Å, were obtained. These results imply the absence of a direct coordination of the phosphoryl group of P-creatine by the nucleotide-bound metal on creatine kinase but indicate proximity of enzyme-bound substrates and are consistent with van der Waals contact between a phosphoryl oxygen of P-creatine and the hydration sphere of the nucleotide-bound metal. Since the metal ion is coordinated to the γ-phosphoryl group of ATP on the enzyme, the overall migration of the phosphoryl group during phosphoryl transfer is ∼3 Å, toward the nucleotide-bound metal.Creatine kinase failed to catalyze phosphoryl transfer from P-creatine to CrADP as monitored by the disappearance of the 31P NMR signal of P-creatine in a solution containing CrADP, P-creatine and creatine kinase. The ability of an isomer of β,γ-bidentate CrATP to act as a partial substrate and our observation of the absence of phosphoryl transfer from P-creatine to CrADP indicate that metal ion coordination of the transferable phosphoryl group precedes phosphoryl transfer and is a requirement of the creatine kinase reaction.
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    Muscle contraction and enzymatic action: Challenges to quantum chemistry (1981)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 317-329 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The energy of muscle contraction is generated by interactions between the proteins actin and myosin, acting together to hydrolyze a metaphosphate bond of ATP in the presence of Mg++, using the oxygen of a specific water molecule. The molecular setting for these events is described. A key feature is identified to be an attack by the water oxygen on one of the P—O—P bonds. The resulting hydrolysis liberates a phosphate group which is forcefully repelled from its original setting, perturbing metal ions and electron orbitals in the vicinity. The hypothesis is advanced that the accompanying perturbations excite an electron cloud to a hgher energy level, leading to a forceful expansion of the electron cloud. A model is presented representing the S-l head of myosin as being tilted with reference to the coordinates of the actin filament by the expansion of this cloud. This tilt represents a leverlike movement of the S-1 myosin head which is capable of powering the work of muscle contraction. Since the most important molecular participants in muscle contraction are present in all cells, the issues raised here are of very general biological significance.
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    Nonrigid molecule effects in molecules with linear or nongeometrically equivalent equilibrium configurationsThis work was supported in part by NSF Grant GP-5535. (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 325-377 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A theoretical study is made of the states of nonrigid molecules, extending earlier work to apply Longuet-Higgins' symmetry group of feasible permutation/inversions in two previously untreated cases. The first involves nonrigid molecule processes between different stereoisomers, that is between molecular equilibrium configurations of different geometrical shapes. The second takes into account nonrigid molecule processes in linear molecules. The theory is applied to the specific case of nonrigid molecule effects in the butyl ion C4H9+ (case i), and the form of the nonrigid molecule energy levels and spectra are determined. The theory is also applied to determine the nonrigid molecule energy levels in linear H2F2 (case ii).
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    Rearrangement correction to higher polarizabilities of two-electron systems (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 495-504 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper we include the rearrangement correction (discussed in the preceding paper) in a coupled Hartree-Fock (CHF) calculation of atomic hyperpolarizabilities and other related properties. We have studied the effect of these corrections on properties like electric dipole hyperpolarizabilities, uniform electric field quadrupole polarizabilities and shielding factors in two-electron ions and have noticed significant changes in the computed values over the CHF results.
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    Erratum (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 555-555 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090318
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    On a new partitioning of the Hamiltonian in many-body calculation of pair-correlation energies in closed-shell systems (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 545-554 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We introduce here a new partitioning of the Hamiltonian in calculating pair-correlation energies using many-body perturbation theory, by which we are able to eliminate the off-diagonal particle-hole (p-h) ladders exactly to all orders in the perturbation expansion. In this formulation, the particle states turn out to be different for each distinct pair of hole states in the correlation energy calculation. We have also included the contributions of the diagonal particle-particle (p-p) and hole-hole ladders exactly to all orders. The effect of the off-diagonal p-p ladders has been estimated for each pair by computing the third-, foruth- and fifth-order energies. For highly symmetric systems the present partitioning yields in general symmetry-broken orbitals. Here one may use an average kind of partitioning for all the partners of the degenerate sets, which restores the symmetry and at the same time ensures cancellation of the p-h ladders exactly at the lowest order and approximately at the higher orders. Results are presented for a selection of 6π-electron conjugated systems. The correlation energy for each pair is in excellent agreement with that obtained from a partial CI calculation involving all double excitations from this pair. The advantages of implementing the present scheme in larger systems has been discussed.
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    Electronic correlation studies. III. Self-correlated field method. Application to 2S ground state and 2P excited state of three-electron atomic systemsAbstracted from part of a thesis submitted by R. Lissillour to the University of Rennes, 1973. (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 627-634 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The self-correlated field method is based on the insertion in the group product wave function of pair functions built upon a set of correlated “local” functions and of “nonlocal” functions. This work is an application to three-electron systems. The effects of the outer electron on the inner pair are studied. The total electronic energy and some intermediary results such as pair energies, Coulomb and exchange “correlated” integrals, are given. The results are always better than those given by conventional SCF computations and reach the same level of accuracy as those given by more laborious methods used in correlation studies.
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    The “seniority” classification of spin hamiltonian and states of complexes and molecules in approximation of one-centered plethysms (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 669-681 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A modification of the concept of “seniority” for the classification of the permitted terms and the effective operators in complexes and molecules is presented. Tables of the states of complexes of impurity orbital nondegenerate ions (N = 3, 4) with spin S (\documentclass{article}\pagestyle{empty}\begin{document}$ S = \frac{1}{2} - \frac{7}{2} $\end{document}) and the corresponding tensorial operators are given.
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    Perturbation theory for degenerate states of atomic and molecular systems (1975)
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 9 (1975), S. 711-719 
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    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The first few terms of the perturbation expansions for the function and the energy shift of a degenerate state of an arbitrary quantum mechanical system are obtained using the adiabatic formula. It is shown how the expansion for the secular operator may be obtained from the expansion for the function. The results are used to calculate energies of the ground and some excited states and multiplet splittings of some beryllium-like ions.
    Additional Material: 2 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/qua.560090413
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