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  • Wiley-Blackwell  (12,490)
  • American Chemical Society (ACS)
  • Reidel
  • 1970-1974  (12,495)
  • 1973  (6,674)
  • 1970  (5,821)
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  • 1970-1974  (12,495)
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  • 1
    Electronic Resource
    Electronic Resource
    Ionic polysaccharides. IV. Free-rotation dimensions for disaccharide polymers. Comparison with experiment for hyaluronic acid (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 811-824 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The root-mean-square end-to-end distance has been calculated for a model allowing free rotation about glycoside bonds for the general case of polysaccharides having a disaccharide repeating unit. Numerical estimates are given for several naturally occurring structures based on an idealized pyranose unit in the C1 chair conformation. Extrapolation procedures which make use of the intrinsic viscosity [η] in good solvents to obtain unperturbed dimensions do not represent, data for hyaluronic acid very well, especially at low molecular weights. However, order-of-magnitude estimates suggest that this polymer behaves similarly to other polysaccharides, and probably has stiffer local structure than typical non-ionic synthetic polymers. A double logarithmic plot of the product of [η] and M̄w, the weight-average molecular weight, against the degree of polymerization in the range for M̄w of 104 to 2 × 104 permits a straight-line fit of available data for all the glycosaminoglycans, including heparin and the chondroitin sulfates, as well as sodium carboxymethyl cellulose. This result suggests similarity of short-chain hydrodynamic behavior of these polymers.
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090707
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  • 2
    Electronic Resource
    Electronic Resource
    The 4th Jerusalem symposium (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 875-875 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090711
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  • 3
    Electronic Resource
    Electronic Resource
    Masthead (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970) 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090801
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  • 4
    Electronic Resource
    Electronic Resource
    Diffusional boundary spreading in the ultracentrifuge (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 865-874 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A common approximation for deriving solutions to the Lamm equation is to neglect diffusion. This paper presents a singular perturbation technique that allows one to estimate the band spreading due to nonzero diffusion coefficient. We illustrate the general mathematical technique by its application to sedimentation when pressure effects are important. Comparison of the approximate solution with accurate numerical solutions shows that the relative errors are of the order of 1% both for concentration and concentration gradient for parameters of chemical interest.
    Additional Material: 3 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090710
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  • 5
    Electronic Resource
    Electronic Resource
    Role of pH in charging of glycogen (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 891-896 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Glycogen acquires a negative charge in both alkaline and acidic solutions and can move in an electrical field, its mobility being related to the degree of alkalinity or acidity. There is a slight increase in relative viscosity at both ends of the pH spectrum. These effects and the changes in nuclear magnetic resonance as a function of pH are interpreted.
    Additional Material: 3 Tab.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090803
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  • 6
    Electronic Resource
    Electronic Resource
    Studies on the viscosity of solutions of bovine liver glutamate dehydrogenase and on related hydrodynamic models; effect of toluene on enzyme association (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 877-889 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The viscosity of bovine liver glutamate dehydrogenase solutions was studied at 10 and 20° C in 0.2.M sodium phosphate buffer at pH 7, in the concentration range 0.1-8 mg/ml. A method for the study of the viscosity of very dilute solutions of associating enzymes is described. It was found that the reduced specific viscosity ηsp/c of glutamate dehydrogenase continuously increases with increasing enzyme concentration, from about 4 ml/g at the lowest concentrations to about 16 ml/g at 8 mg/ml. In the presence of 10-3M GTP and 10-3M NADH the viscosity increase is much smaller and the results can be extrapolated to zero enzyme concentration to yield an intrinsic viscosity [η] = 3.2. The values of ηsp/c in phosphate buffer alone apparently extrapolate to the same value of [η], or to a value close to it. We also observe that, in the presence of toluene ηsp/c increases very much more with enzyme concentration: ηsp/c already equals 16 ml/g at a concentration of 0.75 mg/ml. These observations are in good agreement with the hypothesis that the active oligomer of glutamate dehydrogenase (MW = 312,000) associates with increasing enzyme concentration to form linear rodlike polymers of indefinite length. This association is strongly diminished by the addition of 10-3M GTP, 10-3M NADH. Toluene, on the other hand, promotes reversible association to linear polymers of very high molecular weight. The transverse and axial rotary frictional coefficients of macroscopic bodies, similar to a physical model for the structure of glutamate dehydrogenase recently advanced, were determined. Assuming that the viscosity of the model is equal to that of an ellipsoid of rotation with identical frictional coefficients, we calculate [η] = 3.26 ml/g according to Kuhn and 3.20 ml/g according to Simha, for the glutamate dehydrogenase oligomer, in good agreement with the result derived from the study of enzyme solutions.
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090802
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  • 7
    Electronic Resource
    Electronic Resource
    Surface chemistry of poly(β-beiizyl L-aspartate) (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 911-922 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Molecular monolaycrs of poly(β-benzyl L-aspartate) spread at. an air-water interface have been studied. The results obtained both by direct observations on the monlayer and from examination of collapsed films with polarized infrared spectroscopy and electron diffraction are consistent with the presence of right handed α-helices in the mono-layer when the molecular weight is high. When 1% (v/v) isopropanol is present in the subphase the right-handed helix prevails, provided that the monolayer is first spread on water. Monolayers of low molecular weight polymer appear to form the crossed-β structure. Orientated collapsed films of high molecular weight polymer can be converted to the left-handed α-helical and to the ω-conformation, and the mechanisms are discussed. The surface chemistry of this polymer is compared with that of related polymers and a consistent pattern of behavior emerges.
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090805
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  • 8
    Electronic Resource
    Electronic Resource
    Characterization of acid-denatured DNA by low-angle light scattering (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1017-1028 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Low-angle light scattering results reported previously demonstrated that measurements on high molecular weight native DNA must be made at angles below 30° in order to obtain correct molecular weights. Earlier light-scattering data obtained on denaturated DNA at angles above 30° showed no change in molecular weight upon denaturation, even though other techniques clearly showed that strand separation occurred. This paper reports low-angle measurements on solutions of calf thymus and T7 DNA denatured under acidic conditions. The results demonstrate that a halving of molecular weight consistent with strand separation is detected by light scattering only when low-angle data are used to obtain correct molecular weights for native material. As expected from theoretical considerations, the scattering from denatured DNA is a linear function of sin2(θ/2), where θ is the angle of observation. This result shows that anticipated experimental artifacts have no significant effect on the low-angle measurements and demonstrates that the curvature in the scattering envelope observed for native DNA below 30° is an inherent property of the native molecule.
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090905
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  • 9
    Electronic Resource
    Electronic Resource
    Kinetics for the transition between cis- and trans-helices in poly-L-prolineA preliminary report of this work was presented at the 156th National Meeting of the American Chemical Society, Atlantic City, New Jersey, September 1968. (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1001-1016 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The kinetics for the cis-trans isomerization of long-chain poly-L-proline has been studied as a function of pressure, temperature, and solvent composition in the acetic acid + n-propanol solvent system. Our complete kinetic curves were fitted by Monte Carlo techniques, and rate constants for nucleation, growth, and termination were estimated. It was found that for the formation of a cis-helix, high pressure, low temperature, and increased acetic acid content of the solvent, lowered the rate of nucleation relative to growth. The inverse seems to be t rue for the formation of a trans-helix. Molecular models suggest that this behavior of the kinetic constants can be due to the exposure of peptide units to solvent in the transition state for trans nucleation, and the burying of peptide units in the transition state for cis nucleation. It is further suggested from our analysis of complete kinetic curves that at least one of the assumptions usually made in the analysis of relaxation kinetics is invalid for poly-L-proline.
    Additional Material: 6 Ill.
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    URL: http://dx.doi.org/10.1002/bip.1970.360090904
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  • 10
    Electronic Resource
    Electronic Resource
    X-Ray diffraction of ethylenediamine-amylose complex (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1039-1047 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Solutions of amylose in ethylenediamine yield a crystalline film complex upon evaporation of solvent. The x-ray analysis indicates the presence of a tetragonal-shaped cell with a symmetry approximating that of space group P212121. The amylose sixfold helix has a diameter of 13.3 Å and a translation period of 8.0Å. Chemical and physical analyses support a complexing ratio of one ethylenediamine molecule to every two glucose units. The structure is nearly identical to any amylose-dimethyl sulfoxide complex previously examined. The square mode of packing arrangement appears to result from complexation between amylose chains. Such complexing indicates a much greater degree of amylose interaction than is observed in amylose complex structures having a hexagonal close-packing arrangement.
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    URL: http://dx.doi.org/10.1002/bip.1970.360090907
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  • 11
    Electronic Resource
    Electronic Resource
    Potentiometric titration of poly-S-carboxymethyl-L-cysteine in aqueous NaCl solution (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1049-1058 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: pH titration measurements of poly- S-carboxymethyl-L-cysteine were undertaken in the aqueous Nacl solution in relation to the β form-random coil transition. The titration curves show a marked molecular weight dependence because of the shortened chain length of materials. Comparison of the optical rotatory dispersion parameter a0 with the titration curve reveals that the titration curve apparently reflects a β structure-random coil transition. The β form of this polymer is assumed to be an intramolecular β form, rather than a β structure stabilized by an intermolecular hydrogen bond, at least in the polymer concentration range considered here. The standard free energy change per amino acid residue for the transition from un-ionized random coil to un-ionized β form is estimated to be about -750 cal/mole residue in the range of 0.005-0.2M NaCl concentration.
    Additional Material: 4 Ill.
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    URL: http://dx.doi.org/10.1002/bip.1970.360090908
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  • 12
    Electronic Resource
    Electronic Resource
    Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleolides (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1059-1077 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The circular dichroism (CD) spectra of the four usual deoxymononucleosides, all sixteen deoxydinucleotides, and a number of trinucleotides have been measured. The dimer spectra are quite different from the sum of the spectra of their constituent monomers. This indicates the presence of base-stacked conformations analogous to those found for ribonucleoside diphosphates. The CD spectra of several deoxytrinucleotide diphosphates and single-strand f 1 DNA can be calculated fairly well by using a semi-empirical nearest-neighbor approach. There is little or no effect of terminal phosphate or of salt concentration on the optical properties of most deoxy oligomers. The possibility of simultaneous analysis of mixtures of deoxypurine or deoxypyrimidine sequence isomers has been examined. This seems to be a viable approach for the analysis of purine runs but cannot promise much success for pyrimidine runs.
    Additional Material: 7 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090909
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  • 13
    Electronic Resource
    Electronic Resource
    Oligonucleotide interactions. IV. Conformational differences between deoxy- and ribodinucleoside phosphates (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1079-1103 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The circular dichroism spectra of all 16 ribodinudeoside phosphates containing the bases adenine, uracil, cytosine, and guanine have been measured at room temperature and neutral pH. These results are compared with the circular dichroism spectra of the corresponding deoxy compounds. From the optical properties it is clear that the geometry of the base-stacked conformation of ribo compounds must differ substantially from that of deoxy compounds. Because of this, it is not possible to draw firm conclusions about the relative extent of stacking in most ribo and deoxy compounds. The optical rotatory dispersion of about a dozen deoxy and ribodinucleoside phosphates has been studied as a function of temperature. These results confirmed the conclusions drawn earlier from measurements at a single temperature. Several dinucleoside phosphates containing a 2′ → 5′ phosphodiester bond have also been examined. These compounds have a substantial degree of base stacking at room temperature. The geometry of the stacked conformation is different from that of either the normal ribo dimer or the deoxy dimer. The role of the 2′-hydroxyl group in stabilizing base stacked geometries has been examined by studies on C-2′-O-methyl-pC. This compound has optical properties almost identical to those of CpC. This suggests that the effect of the 2′ hydroxyl is felt indirectly through its perturbation of the geometry of the sugar ring rather than directly by hydrogen bonding. It is not possible at present to identify precise conformational differences among deoxy-, ribo-and 2′ → 5′ ribodinucleoside phosphates.
    Additional Material: 10 Ill.
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    URL: http://dx.doi.org/10.1002/bip.1970.360090910
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  • 14
    Electronic Resource
    Electronic Resource
    Aggregation of poly-L-proline II (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1119-1124 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 3 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1970.360090912
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  • 15
    Electronic Resource
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    The influence of single-strand breaks on the kinetics of denaturation of DNA (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1349-1360 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The influence of single-strand breaks on the kinetics of the relaxation of DNA in a solution of low ionic strength has been investigated by a temperature jump method. The relaxation of DNA after a jump of 0.7 °C in the melting region has been monitored by measuring the extinction at 260 nm. For essentially monodisperse T4 DNA (M = 130 × 106) two distinct relaxation times have been observed, that depend markedly on the initial extent of denaturation 1 - θ. The larger relaxation time decreases from 450 sec to about 300 sec, the smaller one from 55 see to 30 when 1 - θ increases from 0.03 to about 0.8. The dependence of these relaxation times on the average number of single-strand breaks per molecule (p) appears to be very small up to p = 100. However, the relative contribution of the slow process decreases sharply when p increases from 0.6 to 30 and remains nearly constant for larger p. The observations are discussed in the light recent theories of the kinetics of denaturation.
    Additional Material: 5 Ill.
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    URL: http://dx.doi.org/10.1002/bip.1970.360091105
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  • 16
    Electronic Resource
    Electronic Resource
    Electro-optic scattering studies on deoxyribonucleic acid (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1361-1372 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Measurements have been made of the intensity of light scattered from aqueous solutions of calf thymus DNA with and without the application of electric fields. For fields approaching 150 V/cm and frequencies below 2.5 KHz, changes (ΔI) of up to 10% in the residual scattered intensity were observed. In agreement with previous dielectric and electric birefringence measurements, a low frequency dispersion of ΔI was observed, from which a rotary diffusion constant (D) of 1200 s-1 was determined. Interpreting the electric field data in terms of the classical dipolar orientation theory led to values of 2.4 × 10-25 cm (7.4 × 10-14 esu) and 4.3 × 10-25 cm (13 × 10-14 esu) for the permanent dipole moment and the anisotropy of the electric polarisabilities respectively. Furthermore the permanent dipole moment was along the major molecular axis and the particles orientated in the field as rigid entities. The zero field data indicated a molecular shape which was not rodlike but corresponded to the Kratky-Porod “stiffness” parameter of x = 24 for the wormlike coil model. Although curved, the molecules appeared to orientate in low-intensity electric fields as rigid, but not rodlike molecules. The implications of this on recent discrepancies in D determined by two or more dynamic relaxation methods is briefly discussed.
    Additional Material: 4 Ill.
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    URL: http://dx.doi.org/10.1002/bip.1970.360091106
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  • 17
    Electronic Resource
    Electronic Resource
    Buoyant density and solvation of magnesium DNA (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1391-1402 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The buoyant density of T-4 DNA was determined by equilibrium sedimentation in a density gradient, of mixed solutions of cesium and magnesium chlorides and bromides. The preferential hydration was calculated from these data, allowing appropriately for the exchange equilibrium of DNA with Cs+ and Mg++ ions. The charge and intrinsic solvation of the counterions were found to have no appreciable effect on the hydration of the DNA, the extent of solvation depending only on the thermodynamic, activity of the water. Various reasonable hypotheses are discussed to account for these results.
    Additional Material: 3 Ill.
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    URL: http://dx.doi.org/10.1002/bip.1970.360091108
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  • 18
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    Studies on bacteriophage MS2. VIII. Evidence for dimer formation of MS2 RNA by reaction with formaldehyde at acidic pH (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1373-1389 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Reaction of 27 SMS2 RNA with formaldehyde normally results in an unfolded, 13.4 S form. At acidic pH, however, and under the proper ionic conditions, a compact component sedimenting at 36-40 S was obtained. The molecular weight of this species corresponds to a dinner. The formaldehyde concentration was not critical, and approximately the same number of base pairs had been opened in the compact and in the unfolded form. Presumably dimers, which had been specifically formed under defined conditions, were stabilized by formaldehyde-induced crosslinks. Similar dimers were formed by 16 S and by 23 S ribosomal RNA, but not by tRNA.
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    URL: http://dx.doi.org/10.1002/bip.1970.360091107
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  • 19
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    The extrinsic cotton effects of nitrobenzylic chromophore bound to helical poly-α,L-glutamic acid (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 121-125 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 3 Ill.
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    URL: http://dx.doi.org/10.1002/bip.1973.360120111
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  • 20
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    Effect of degree of polymerization and steric configuration of poly(2-vinylpyridine) as catalyst in the polymerization of phenylalanine NCAThis is the sixth paper in the series of Polymerization of Amino Acid Derivatives by Polymer Catalysts. For the previous paper, see M. Sisido et al., Biopolymers, 9, 791 (1970). (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 181-191 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Despite its being weaker base poly(2-vinylpyridine) polymerized DL-β-phenylalanine NCA at a much faster rate than pyridine and α-picoline. Poly(2-vinylpyridine) adsorbs NCA by hydrogen bonding with the cooperation of a few pyridine groups. This results in a high local concentration of NCA. The syndiotactic configuration of pyridine group seemed to be least suitable for the cooperative hydrogen bonding. Adsorbed NCA is activated to form an “activated” NCA which in turn reacts with an NCA adsorbed on the same polymer chain. Since the polymer chain is flexible, this intramolecular reaction takes place frequently, resulting in the acceleration of polymerization. The intramolecular reaction along the polymer chain is dependent on the degree of polymerization of polymer catalyst. A suitable model was proposed for the intramolecular reaction to explain the effect of degree of polymerization.
    Additional Material: 6 Ill.
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    URL: http://dx.doi.org/10.1002/bip.1973.360120117
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  • 21
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    Single- and double-strand breaks in 5-bromouracil-substituted DNA of B. subtilis and phage PBSH after irradiation with long-wave length UV and their correlation to intramolecular energy transfer (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 329-340 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 5-Bromouracil-substituted DNA was isolated form B. Subtilis and phage PBSH. The three DNA fractions of Different densities (TT, TB, and BB) were irradiated with u.v. (313nm). The number of single-strand and double-strand breaks was determined. The breakage rates are given. It was found that in hybrid DNA (TB) double-strand breaks occur depending linearly on dose. In BB-DNA the observed double-Strand bresks can be divided into two fractions with a linear and quadratic dose dependence respectively. The results can be explained by assuming intramolecular energy transfer from the BU-containing strand to its complementary strand.
    Additional Material: 6 Ill.
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    URL: http://dx.doi.org/10.1002/bip.1973.360120210
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  • 22
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    Calorimetric investigations of crystalline 3′,5′-cyclic nucleotides (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 229-235 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Differential enthalpic analysis of a series of 3′,5′-cyclic nucleotides indicates that homolytic cleavage of the six-membered phosphate ring occurs either immediately prior to or concurrent with decomposition of the crystal lattice. Homolysis is followed by a rapid polymerization to yield oligonucleotides. The enthalpies of these reactions have, with the exception of guanosine 3′,5′-cyclic phosphate, almost identical values of 25 kcal/mole. The anomalous case is attributed to a more stabilized phosphate ring as a result of hydrogen bonding through the two position of the purine ring. The pair of overlapping exothermic peaks observed in each of the thermograms for cAMP and cIMP is related to the presence of two conformational arrangements within the unit cell of each compound.
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    URL: http://dx.doi.org/10.1002/bip.1973.360120203
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  • 23
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    An extended Hückel molecular orbital approach to the study of the electronic structures and barriers to Syn-Anti interconversion in Syn purine nucleosides (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 243-255 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
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    Notes: The total energy and the electronic properties of some syn purine nucleosides have been determined as a function of the rotation angle around the C-N glycosidic linkage. Invariably, the crystallographic coordinates provide a state lying at or very near the minimum on the potential energy curve according to the extended Hückel parametrization here employed. The ribose moiety always carries a net positive charge whereas the base is always negatively charged. Changes in dipole moment magnitudes for the overall structure as well as in net atomic charges are noted upon rotation around the glycosidic linkage indicating that potential functions for polynucleotides may be in error if such changes are ignored.
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    Showing up the thermal transconformation of Na-DNA in solution by noise spectrography (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 341-352 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
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    Notes: Measuring the equivalent noise resistance of Na-DNA solutions in NaCl provides in formation about the free ino atmosphere. In an Arrhenius type diagram, the helix → coil transition is clearly brought Out. A Calculation of the number of free ions in the solution as function of temperature, reveals once more the process of ejection of compensating Na+ ions form the macromolecules during the thermal transconformation.
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    Circular dichroism and molecular conformation of copper(II)-gramicidin S complexes (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 423-433 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: Optical properties in different solvents of gramicidin-bis (salicylaldimine) Cu(II) and (5-I-salicyladimine) Cu(II) chelates are intercepted in terms of their molecular structure. A molecular model for the inversion of Contton effects in two different classes of solvents is proposed. This explanation is supported by the study of optical properties of model compounds.
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    Masthead (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973) 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
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    Studies on cytochrome c. Part III. Synthesis of the protected heneicosapeptide (sequence 24-44) of Baker's yeast iso-1-cytochrome cThe amino acid residues are of L-configuration. For a simpler description the customary L-designation for individual amino acid residues is omitted. Standard abbreviations for amino acid derivatives and peptides are used according to the suggestion of the IUPAC-IUB Commission on Biochemical Nomenclature, European J. Biochem., 1, 375 (1967). (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 507-520 
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    Notes: Syntheses are described for two N-benzyloxycarbonylpeptide tert-butoxycarbonylhydrazides which correspond to positions 24-34 and 35-44, respectively, of the primary structure of baker's yeast iso-1-cytochrome c. The two peptide derivatives were coupled via the azide procedure to form the N-benzyloxycarbonylheneicosapeptide tert-butoxycarbonylhydrazide (sequence 24-44).
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    The rate of γ-benzyl-L-glutamate NCA polymerizations (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 647-654 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: The primary amine initiated homopolymerization of γ-benzyl-L-glutamate NCA in dioxane at 25°C, 35°C, 50°C, and 65°C has been investigated. The reactions were virtually independent of temperature indicating an activation energy of less than 1 kcal/mole. The entropy of activation was estimated to be -65 entropy units at 300°K. The reaction proceeded in two stages. The first stage was zero-order with respect to monomer, whereas the second was first-order with respect to monomer. Both stages were first-order with respect to initiator. These results were interpreted by assuming that the rate constant for propagation was not independent of the degree of polymerization up to the point where a conformational transition to α-helix occurred.
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    Studies on cytochrome c. Part V. Synthesis of the protected decapeptide (sequence 57-66) of Baker's yeast iso-I-cytochrome cThe amino acid residues are of L-configuration. For a simpler description the customary L-designation for individual amino acid residues is omitted. Standard abbreviations for amino acid derivatives and peptides are used according to the suggestion of the IUPAC-IUB Commission on Biochemical Nomenclature,European J. Biochem., 1, 375 (1967). Moreover: -ONpo = o-nitrophenyl; Mbh = 4,4′-dimethoxybenzhydryl; for other abbreviation used see Ref. 2. (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 693-700 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: The synthesis is described of the N-benzyloxycarbonyldecapeptide tert-butoxycarbonylhydrazide, which corresponds to the sequence 57-66 of baker's yeast iso-1-cytochrome c. The peptide derivative was synthesized coupling two smaller subunits via the Rudinger modified azide procedure.
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    A temperature-jump kinetic study of the binding of proflavine to poly I·poly C (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 791-798 
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    Source: Wiley InterScience Backfile Collection 1832-2000
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    Notes: The kinetics of interaction between proflavine and poly I.poly C at 25°C, neutral pH, and moderate ionic strength have been studied by relaxation methods. The qualitative features of this system resemble those previously reported by Crothers and co-workers for proflavine-DNA and proflavine-poly A·poly U interactions-two relaxations are observed coresponding to a fast bimolecular step followed by a slower isomerization. These results can best be accommodated by a two-step mechanism leading from the free dye through an “outside-bound” complex to the intercalated complex. Quantitative comparison of the various rate constants for proflavine binding to different double-helical polynucleotides shows that the rates are slower for both ribohomopolymer pairs than for DNA. The rates for poly I·poly C are approximately three times faster than these for poly A·poly U.
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    The vibrational spectra and structure of poly (rA-rU). Poly (rA-rU) (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 799-816 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: Infrared and Raman spectra of aqueous poly(rA-rU)·poly(rA-rU), the double-helical complex containing strands of alternating riboadenylate and ribouridylate residues, display significant differences from one another and from corresponding spectra of poly(rA)·poly(rU), the double-helical complex of riboadenylate and ribouridylate homopolymers. Parallel studies on the copolymer and homopolymer complexes by cesium sulfate density gradient centrifugation, ultraviolet absorption spectroscopy, hydrogenion titration, 1-N oxidation of adenine residues by monoperphthalic acid and X-ray diffraction reveal, however, that the geometry of base pairing between adenine and uracil is closely similar in each complex and apparently of the Watson-Crick type. Therefore the differences observed between vibrational spectra of poly (rA-rU)·poly (rA-rU) and poly(rA)·poly(rU) are not due to different base-pairing schemes but may be attributed to differences in vibrational coupling between vertically stacked bases. Vibrational coupling may also account for the differences between infrared and Raman spectra of the same complex. Thus, the present results indicate that infrared and Raman frequencies of RNA in the region 1750-1550 cm-1 should be dependent on the base sequence.
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    Anomalies in sedimentation. I. Stability theory of sedimenting entanglements in the “tight-bending” limit (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 857-867 
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    Notes: A simple model is introduced to investigate the stability of a sedimenting entanglement. The sedimenting entanglement is represented by a sedimenting sieve. Solvent can pass through it, but single-chain molecules that flow into it become entangled and their flow decreases or, if permanent entanglements form, ceases entirely. With this model we are able to find the conditions under which the mass of a sedimenting entanglement remains constant, grows or decays to a stable value, grows beyond limit, or decays to the mass of a single chain. The theory is applied to the sedimentation of small concentrations of large chain molecules in solutions of small chain molecules in solutions of small chain molecules for the case in which the entanglements are long-lived. Equations are derived which, (1) give the stable entanglement mass as a function of rotor speed and concentration and, (2) for a given concentration predict the rotor speed at which the entanglement mass grows without limit. Numerical results for small concentrations of T2 DNA sedimenting in solutions of T7 DNA are presented.
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    Interpretation of the solubilities of mixtures of β-lactoglobulins A and B (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 931-936 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 2 Ill.
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    Masthead (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973) 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    The solution behavior of poly-L-proline: I. Light scattering studies in water and concentrated aqueous neutral salt solutions (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 993-1010 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: The solution bebavior of poly-L-proline Form II has been studied in water and aqueous salt solutions by both elastic and quasi-elastic light -scattering techniques. The results of this study suggest that polyproline Form II can exist in water at 24 °C as an associated polymer complex and that certain salts which do not appear to affect the helix integrity, e.g., guanidinium-HCl, resutl in dissociation of the aggregate. Other neutral salts, of the variety effective in mediating unfolding of the Form II helix (e.g., 4M NaClO4) also induce aggregate dissociation, but 4M CaCl2 results in enhanced aggregation of polyproline. Kinetic experiments indicate that a time of 20 hours is necessary for the completion of the “large” to “small” transformation (at 22°C) which is induced by the addition of 4M NaClO4. Thus it appears that neutral salts additives in aqueous solutions of polyproline influence both the state of aggregation and the conformation of this polymer.
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    Dielectric behavior of DNA-Proflavine complex (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 1047-1052 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The dielectric relaxation of namtive DNA and DNA-proflavine complexes at different DNA phosphate (P) to dye (D) ratios, were investigated in the frequency range 100 c/sec to 100 Kc/sec. The proflavine molecules were found to have a profound effect on the static dielectric constant and the relaxation time of the polymers. The static dielectric constant was oberserved to decrese with increasing level of added proflavine. At P/D = 1, the variation of dielectric constant with frequency was small. Relaxation time (τ) was greater for the DNA-proflavine complexes compared to that for free DNA, Maximum value of the relaxation time was obtained at P/D = 10. The increase in the relaxation time and decrease in the static dielectric constant were attributed to the increase in length and meutralization of surface charges of the DNA molecules, respectively, as aresult of proflavine binding.
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    The solution behavior of poly-L-proline: II. Fluorescence behavior of labeled polyproline in water and conentrated aqueous neutral salt solytions (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 1011-1019 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: Fluorescence depolarization experiments performed on labaled poly-L-proline Forme II suggest the occurrence of aggrgation in water while 6M guanidinium-HCl induces dissociation. The solvent 4M CaCl2 results in a reduction of polymer structural orgganization. These findings corroborate suggestion of polyproline aggregation and solution behavior in aqueous neutral salt solytion (see preceding article).
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    The effect of alkali and alkaline earth salts on the structure of hydrated collagen fibers as studied by deuterium NMR (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 1053-1062 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: A detailed study on the deuterium NMR of hydrated collagen in the presence of alkali and alkaline earth salt is reported. The effect of different salts in reducing the deuteron quadrupole splitting are similer at low molar content of salt. At higher salt contents, larger ions are more effective. The ressults are explained by the blocking of water binding sites to collagen by hydrated ions. When the temperature is reduced, only part of the adsorbed water iss frozen, and the amount of “unfreezable water” decreases with the increase in ionic sizes(LiCl 〈 MgCl2 〈 KCL 〈 KCNS). The freezing temperature is also lowered in the presence of salts. A description of the structure of hydrated collagen based upon the observed facts is given.
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    Conformational studies of anthrax polypeptide, subtilis polypeptide, and synthetic poly-γ-Lglutamic acidPart of the Ph.D. thesis of C. C. Kalita. (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 1089-1098 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: Poly-γ-L-glutamic acid has been synthesized by the activated pentachlorophenyl ester polymerization method and the molecule weight of the polymer was found to be 16,000. Comparative conformational studies on the synthetic and on the native polyglutamic acid mbtained from B. anthracis and B. subtilis were carried out using optical rotatory dispersion, circular dichroism, peptide absorption spectrum, and titration data. These results show that poly-γ-glutamic acid does not exhibit any conformational order under the conditions of investigation. At low degrees of ionization, restriction of conformational freedom via random “hypercoiling” of the chain appears likely.
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    Histone IV binding of 3,4-benzpyrene, pyrene, anthracene, and 9-methylanthraceneSupported by Publice Health Service Grants CA 10679 and ES 00210. (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 1149-1160 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
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    Notes: Ultraviolet absorption, fluorescence excitation and emission, and fluorescence anisotropy demonstrate that the polycyclic aromatic hydrocarbone 3,4-benzpyrene, Pyrene, anthracene, and 9-methylanthracene bind to histone IV after the sow conformational change in the presence of divalent phosphate anion. These hydrocarbons do not bind, within our limits of detection, to histone IV in the diosorderde form at low pH or to the form produced by the fast conformational change when the slow change is prevented. High anisotropy values for the bound hydrocarbon indicate a high degree of aggregation for the histone IV.
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    The self-assembly of collagen moleculesPresented in part at the 16th Annual Meeting of the Biophysical Society, Toronto, Canada, February 24-27, 1972. (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 1437-1444 
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    Notes: The aggregation of native acid-soluble collagen (N-ASC) and of pronase-treated acid soluble collagen (P-ASC) was examined in solution under conditions which varied from those of minimum collagen-collagen interaction to those leading to incipient fiber formation. Molecular weights and weight distributions were determined in the analytical ultracentrifuge using the Yphantis high speed sedimentation equilibrium and Aarchiblad approach-to-equilibrim techniques. The aggregation was pH and ionic strength dependent in each case. Under conditions of minimum aggregation (low pH, low ionic strength), N-ASC showed the presence of permant aggregates. At higher pH and ionic strength, a higher fraction of aggregate was formed but these were of the same charcter and molecular weight as the permanent aggregates. The aggregates were of a single molecular size, with a weight of 1.5 × 106 daltons, compared with a monomer collagen weight of 3.1 × 105 daltons. The P-ASC formed aggregates also but to a much lower extent and the maximum aggregate size corresponded to dimers in molecular weight. These data show the major importance of molecular end-regions in collagen aggregation to form native type fibers and, by virtue of the discrete size of the N-ASC aggregates, support the microfibrillar hypothesis for the assembly of collagen fibrills.
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    Sedimentation and intrinsic viscosity behavior of PM2 bacteriophage DNA in alkaline solution (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 1387-1419 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: The sedimentation coefficient and intrinsic viscosity of nicked and closed circular PM2 bacteriophage DNA have been measured as a function of pH in the alkaline region. A gradual increase in the sidimentation coefficient, and a corresponding decrease in the intrinsic viscosity, are observed for the superhelical (closed) circle in the pH region from 10.5 to about 10.9. This has been tentatively interpreted in terms of the known dependence of sedimentation coefficient upon the number of superhelical turns. At slightly higher pH values, the curve passes through the minimum (sedimentation coefficient) and maximum (intrinsic viscosity) expected when the superhelical turns present at neutral pH are unwound by partial alkaline denaturation. Sedimentation studies of the relaxed (nicked) circular species have revealed the existence of DNA forms in the pH region from 11.27 to 11.37 which sediment considerably faster than the closed circle in the same pH region. These have been identified as partially denatured nicked circles, in which varying fractions of the duplex structure have undergone alkaline denaturation, but strand separation has not yet occurred. Varying fractions of a slower species, either undenatured or completely denatured nicked circles, are also observed in some of these experiments. A corresponding result is observed in the intrinsic viscosity vs. pH curve.When nicked circular PM2 DNA is exposed to various alkaline pH's, rapidly neutralized, and sedimented at neutral pH, the expected sharp transition from native to denatured (strand-separated) molecules is seen. However, a very narrow pH range is noted in which native and denatured forms coexist in a single experiment. The above experiments carried out upon the closed form also reveal a narrow pH range in which the bulk of the transition from native closed circles to the collapsed cyclic coil takes place, in acccord with an earlier study on a different DNA. This transition is shown never to be completely effected, however, as there is a fraction (7-8%)of the closed circles which renature to the native form, regardless of the alkaline pH employed. This same phenomenon was not observed in the case of artificially closed λb2b5c DNA circles. Possible explanations for some of the above results are discussed.
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    Polymerization of DL-phenylalanine NCA initiated by copolymer of sarcosine and DL-phenylalanine (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 1505-1513 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: Polymerizations of DL-phenylalanine NCA by block copolymers of sarcosine and DL-phenylalanine, designated by (Phe)m(Sar)n and capable of reaction at the phenylalanyl terminal, were investigated in nitrobenzene solution at 25°C. With increasing n for constant m (m = 0, 1, 2, and 5), the polymerization rate greatly increased. Previously the acceleration of the initiation reaction in the polymerization of DL-phenylalanine NCA by polysarcosine (m = 0) was reported. The present results showing the acceleration by the copolymers of sarcosine and DL-phenylalanine indicate the presence of the polymer effect in the propagation reaction as well. However, the polymer effect was most marked with polysarcosine (m = 0), and decreased with increasing m.The same polymerizations by sequential copolymers composed of ten sarcosine units and two DL-phenylalanine units were also investigated. Again with these copolymer catalysts the polymerization rate was larger than that by monomeric amines. But the polymer effect decreased sharply when the phenylalanine units take positions near the terminal amine group of the copolymer catalyst.These two deteriorating effects of the phenylalanine unit have been interpreted in terms of the decrease of the flexibility of polymer chain, caused possibly by an intramolecular hydrogen bond of the phenylalanine unit.
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    Cooperative binding of oxygen to hemoglobin: Analysis of accurate equilibrium binding data (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2057-2073 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: Accurate equilibrium binding data for the oxygenation of hemoglobin are used (a) to show that various models for cooperativity are inconsistent with the best available experimental data, (b) to determine the equilibrium constants for binding of 2,3-diphosphoglycerate to hemoglobin molecules in intermediate stages of oxygenation, and (c) to deduce a mechanism for allosteric effects in hemoglobin which is consistent with the best available experimental data. The total free energy of cooperativity is defined and discussed.
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    Dielectric relaxation and orientation of DNA molecules (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2151-2159 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A conductivity dispersion has been measured at very low frequencies (VLF) on several concentrated DNA solutions. By measuring simultaneously their electric birefringence decay, it is shown that the dielectric relaxation (which is related to the conductivity dispersion) is due to the molecular orientation. Different polarization mechanisms are discussed. It is concluded that the DNA polarizability measured in the VLF range can only be explained by the orientation of a permanent ionic dipole. It is suggested that such permanent dipoles could be caused by small differences in the ionic composition between the two molecular “ends;” the difference could either be stable (asymmetrical localization of protein impurities for instance) or transient (fluctuating dipoles explained by the Kirkwood-Schumaker theory).
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    The Conformation of Polycytidylic Acid, Polyguanylic Acid, Polyinosinic Acid, and Their Helical Complexes in Aqueous Solution from Laser Raman Scattering (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2195-2195 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    Synthèse et Caractérisation des Trois Premiers Oligomermères de l'Acide α-L-Glutamique. I (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2199-2209 
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    Notes: In the present work, the synthesis of the three primary oligomers of α-L-glutamic acid is described; the general formula is the following: [I] The choice of protective groups at the both ends of the chain allows for the good solubility in the water and the liberation of free carboxyl groups on the side chain. Thus, models are obtained for the study of thermodynamic properties of solutions and especially of the interactions between polyanions and cations. The prepared products are characterized by different techniques such as mass spectrometry potentiometry, tonometry, and thin-layer chromatography. The results are in agreement and lead to the conclusions that the molecules have the general formula of [I] and are stereoregular.
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    Conformational studies on pyrimidine 5′-monophosphates and 3′,5′-diphosphates. Effect of the phosphate groups on the backbone conformation of polynucleotidesThis paper was presented at the Biophysical Society Meetings, Columbus, Ohio, Febraury 28-March 2, 1973. (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2261-2277 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: In continuation of our studies on the effect of the base and the phosphate groups on the glycosyl and the sugar-phosphate backbone conformation, we have carried out semi-empirical potential energy calculations on the common 5′- and 3′5′-ribopyrimidine mono- and diphosphates by considering simultaneous rotations about the glycosyl (χ) and the C(4′)-C(5′) (ψ) bonds. This calculation provides an assessment of the nature and orientation of the base on the sugar-phosphate backbone conformation of nucleotides and polynucleotides. It is found that the attractive inetractions between the 5′-phosphate group and the base mutually stabilize the antiand the gauche-gauche (gg) conformations about χ and ψ, respectively, in 5′-ribopyrimidine nucleotides. The introduction of the 3′-phosphate group as in 3′,5′-ribopyrimidine diphosphates, still leaves the anti-gg as the most favored conformation with the important difference that the probability of occurrence of the anti, gauche-trans (gt) is how substantially increased. This is dependent to a large extent on the sugar conformation and to a lesser extent on the base. Uracil and thymine show a greater probability for the anti-gt than cytosine. The syn conformation is considerably less likely and its occurrence is also dependent on the base type, cytosine showing a lesser tendency than uracil and thymine. For the syn base, the most favourec conformation for ψ is gt, since gg is sterically disallowed and tg is destabilized by electrostatic repulsive interactions between the 3′ and 5′-phosphate groups. Thus, there is a striking correlation between the glycoysl and the backbone C(4′)-C(5′) bond conformations. The rest of the bonds of the backbone are considerable less dependent on the glycosyl conformation. These studies reveal that in poly-ribopyrimidine nucletides the majority of the nucleotide residues are expected to occur in the anti-gg conformation.
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    The effect of polydispersity on the nuclear magnetic resonancxce spectra of ply-Y-benzyl-L-glutamate (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2335-2349 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: The effect of poly dispersity on the nuclear magnetic resonance spectra of samples of poly-γ-benzyl-L-glutamateein the helix-random coil transition is studied. In the transitionregion the α-CH proton resonance shows two peaks whose behavior does not change appreciably upon fractionation by gel permeation chromatography. Theoretical spectra were computed with both a polydispersity model of the transition and a model for slow nucleationof helix from completely random coil molecules. The results suggest that the double peak behavior in the nmr spectra results from a slow rate of helix nucleation rather than polydispersity.
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    Conformational studies on alamethicin (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2691-2712 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: A conformational analysis has been carried out for the cyclic peptide antibiotic alamethicin. Unlikely structures were first eliminated by constructing van der Waals' energy maps for near-neighbor contacts and using these maps to generate forty complete alamethicin structures free of steric overlaps. The energies of the forty conformations were minimized; optimizing all dihedral angles first in sets and then simultaneously, to give a family of five low-energy structures. In the conformation of lowest energy three of the seven α-amino isobutyric acid residues occur in a six-residue α-helix and three at the two chain reversals. Judged by the change in conformational energy as a function of the change in dihedral angle, the flexibility of the chain is determined by both the type of peptide unit and its position in the molecule.The model has features consistent with reported circular dichorism and surface balance measurements and has two polar centers separated by a lipophilic region. It does not contain the large central pore required by some theories for the action of alamethicin on cell membrances. It therefore probably acts by altering membrance structres rather than by shuttling ions through a pore in the membrance.
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    Structure of guanosine-3′,5′-cytidine monophosphate. I. Semi-empirical potential energy calculations and model-building (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2731-2750 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: The conformation and packing scheme for guanosine-3′, 5′-cytidine monophosphate, GpC, were computed by minimizing the classical potential energy. The lowest energy conformation of the isolated molecule had dihedral angles in the range of helical RNA's and the sugar pucker was C3′ endo. This was used as the starting conformation in a packing search over orientation space, the dihedral angles being flexible in this step also. The packing search was restricted by constraints from our x-ray data, namely, (1) the dimensions of the monoclinic unit cell and its pseudo-C2 symmetry (the real space group is P21), (2) the location of the phosphorous atom, and (3) the orientation of the bases. In addition, a geometric function was devised to impose Watson-Crick base pairing. Thus, a trial structure could be sought without explicit inclusion of intermolecular potentials. An interactive computer graphics system was used for visualizing the calculated structures.The packing searches yielded two lowest energy schemes in which the molecules had the same conformation (similar to double-helical RNA) but different orientations within the unit cell. One of these was refined by standard x-ray methods to a discrepancy index of 14.4% in the C2 pseudocell. This served as the starting structure for the subsequent refinement in the real P21 cell.5
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    Hydration of stratum corneum (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2789-2802 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: A model for the hydration behavior of human stratum corneum has been developed from measurements on in vitro samples isolated in a manner which minimized tissue treatment and trauma. Water sorption/desorption rate measurements as a function of water activity, temperature, and tissue integrity are reported. These data, together with thermodynamic data (infrared and nmr results reported earlier) are consistent with a model in which rapidly sorbed/desorbed water (ca. 0.5 mg water/mg stratum corneum) is associated with (“bound” by) the tissue, while slowly sorbed/desorbed “free” water (up to 12 mg water/mg stratum corneum) is kinetically restricted and probably intracellular in location. Both equilibrium water binding and desorption kinetic data suggest structural changes of this cellular water barrier upon hydration. Evidence for hysteresis in water sorption isotherms (reported by others) could not be reproduced.
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    Study by circular dichroism and optical rotatory dispersion of polypeptides with aromatic side-chain chromophores (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 2831-2852 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Poly(ortho-, meta-, and para-γ-nitrobenzyl-L-glutamates) were studied by circular dichroism (CD) and optical rotatory dispersion (ORD) in two helicogenic solvents, hexafluoroisopropanol (HFIP) and dichloroethane (EDC), and two non-helicogenic solvents, dichloracetic acid (DCA) and trifluoroacetic acid (TFA). The corresponding glutamates were also studied in DCA and TFA. The symmetric nitrobenzylic chromophore is optically active when the polymers are in solution in DCA and TFA. The corresponding glutamates are also optically active under the same conditions. Thus, it was not possible to explain the origin of the optical activity of the side-chain chromophore when the polymer is in solution in a helicogenic solvent. Nevertheless, from a side-chain dichroic band, a helix-coil transition curve was determined and the stability of each poly(γ-nitrobenzyl-L-glutamate) given; this stability depends on the position of the nitro substituent on the aromatic ring.
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    Antibiotica: Werkzeuge zur Erforschung der Nucleinsäure- und Protein-Synthese (1970)
    Weinheim : Wiley-Blackwell
    Chemie in unserer Zeit 4 (1970), S. 26-32 
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    Keywords: Chemistry ; Chemistry
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    Topics: Chemistry and Pharmacology
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    Strahlenschutz geht alle an. Hundert heitere Bilder mit ernsten Texten von F. Wachsmann. Zeichnungen von A. Stude. Verlag Karl Thiemig KG, München 1969. 1. Aufl., 208 S., 100 Abb., kart. DM 9,80 (1970)
    Weinheim : Wiley-Blackwell
    Chemie in unserer Zeit 4 (1970), S. 34-34 
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    Zusätze in Kraftstoffen (1970)
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    Chemie in unserer Zeit 4 (1970), S. 44-50 
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    Geomikrobiologie - ein Grenzgebiet (1970)
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    Chemie in unserer Zeit 4 (1970), S. 51-54 
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    Keywords: Chemistry ; Chemistry
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    Solvatisierte Elektronen (1970)
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    Chemie in unserer Zeit 4 (1970), S. 37-43 
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    Keywords: Chemistry ; Chemistry
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    Chronik (1970)
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    Chemie in unserer Zeit 4 (1970), S. 35-36 
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    Keywords: Chemistry ; Chemistry
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    Chemilumineszenz (1970)
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    Chemie in unserer Zeit 4 (1970), S. 55-60 
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    Keywords: Chemistry ; Chemistry
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    Das Experiment: Versuche mit Glucoseoxidase (1970)
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    Chemie in unserer Zeit 4 (1970), S. 61-62 
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    Keywords: Chemistry ; Chemistry
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    Einführung in die Chemie. Von H. R. Christen. Otto Salle-Verlag, Frankfurt/M.-Hamburg 1969. 4. Aufl., XII, 479 S., 273 Abb., Linson DM 19,60 (1970)
    Weinheim : Wiley-Blackwell
    Chemie in unserer Zeit 4 (1970), S. 63-63 
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    Keywords: Chemistry ; Chemistry
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    Die chemische Bindung. Von C. A. Coulson. Übers. und ergänzt von F. Wille. S. Hirzel Verlag, Stuttgart 1969. 1. Aufl., XII, 382 S., 133 Abb., 35 Tab., DM 32,- (1970)
    Weinheim : Wiley-Blackwell
    Chemie in unserer Zeit 4 (1970), S. 63-64 
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    Physikalische Chemie. Teil I: Einführung in die Gastheorie, Quantentheorie, Thermodynamik. Ein Lehrbuch für Chemiker, Verfahrenstechniker, Physiker ab 3. Semester. Von G. M. Barrow. (Aus der unitext-Reihe). Bohmann-Verlag, Heidelberg-Wien/Friedr. Vieweg Sohn, Braunschweig 1969. 1. Aufl., 257 S., 67 Abb., 35 Tab., Paperback DM 19,80 (1970)
    Weinheim : Wiley-Blackwell
    Chemie in unserer Zeit 4 (1970), S. 195-195 
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    Keywords: Chemistry ; Chemistry
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    Automatisierte Analytik (1973)
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    Chemie in unserer Zeit 7 (1973), S. 33-41 
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    Keywords: Chemistry ; Chemistry
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    Moderne Waschmittel (1973)
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    Chemie in unserer Zeit 7 (1973), S. 82-89 
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    Additional Material: 8 Ill.
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    Masthead (1973)
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    Chemie in unserer Zeit 7 (1973) 
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    Keywords: Chemistry ; Chemistry
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    Volume changes accompanying thermal denaturation of deoxyribonucleic acid. II. Denaturation at alkaline pH (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 445-457 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: The change in apparent molal volume φ of DNA on thermal denaturation in carbonate buffer at pH 11.0 has been determined by the dilatometric method. It was found that φ increases sigmoidally during the helix-coil transition. Several methods, including a colorimetric technique that closely simulates the conditions used in the dilatometric experiments, were employed to estimate the protons lost by the DNA during the transition. These measurements indicated that the extent of the proton loss depends on the counterion present, increasing in the order Li+ 〈 Na+ 〈 K+ 〈 Cs+. The major part of the volume changes observed during the denaturation is due to the volume changes expected to accompany the transfer of protons from the bases guanine and thym ne to carbonate ions. As has been previously reported for the denaturation of DNA at neutral pH, the volume change directly due to the change in shape of the polymer molecules is so small as to be experimentally undetectable.
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    Location of proline derivatives in conformational space. II. Theoretical optical activity (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 569-588 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: The coupling of theoretical optical calculations with experimental data provides a check of the validity of the theory or provides conformational information. The theory was validated by studies in which the approximate conformation was located independently. These studies have shown that a theory restricted to the two lowest energy transitions for each chromophore gives qualitative agreement with experiment. On the other hand, for some of the proline derivatives, the theoretical treatment allows detailed conformational assignments. Both successes and failures in correlating theory with experiment are discussed. The results presented provide a basis for assessing the prospects for relating protein and polypeptide optical activity to their conformations.
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    Ethidium bromide-DNA complex: Wavelength dependence of pyrimidine dimer inhibition and sensitized fluorescence as probes of excited states (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 639-653 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: Ethidium bromide inhibits the formation of ultraviolet-induced pyrimidine dimers in DNA. The efficiency of dimer inhibition increases with increasing energy of the exciting photons. The efficiency of energy transfer from the DNA singlet to the dye singlet, as monitored by sensitized fluorescence, is independent of wavelength. The efficiency of singlet-singlet transfer agrees with that for dimer inhibition at photon energies corresponding to excitation of the lowest singlet state of DNA. Our results support a model in which dimers are formed both directly from the singlet state and also from the triplet state, with triplets arising from higher vibrational levels of the singlet.
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    Testing of A size criterion for DNA-hydrocarbon binding (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 689-696 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: The intercalation model of DNA-hydrocarbon binding appears reasonable, but rests on indirect evidence only. To test the model, a size criterion for binding has been proposed. The size criterion is based on the assumption that hydrophobic forces play a major role in the binding of hydrocarbons to DNA. It states that hydrocarbons which are small enough to intercalate into DNA and be well protected from contact with the medium, will be found to bind to DNA; those that are too large will not. We report results on the binding of fourteen polycyclic aromatic hydrocarbons to DNA. Predictions based on the size criterion were found to be valid in all cases tested.
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    Cooperative binding of adenosine by polyuridylic acid: A further analysis (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 697-715 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: The dialysis data of Huang and Ts'o for the cooperative binding of adensine to polyuridylic acid are analyzed here using a grand-partition function Ising model method similar to that originally employed for polyelectrolytes by Rice and Nagasawa. An appropriate modification permitting the treatment of the sliding degeneracy of the two polyuridylic acid strands is also included. In addition to the previously estimated stacking energy of about -6 kcal/mole one also obtains the free energy change F̄ for the transfer of a single adenosine molecule from a fixed site in solution to a fixed site on the polyuridylic acid. This binding energy falls in the range F̄ = -140 to +620 cal/mole, indicating that binding in the 1:2 (purine: pyrimidine) complex is either very weak or repulsive. The absence of any comparable cooperative stacking of adenosines in solution at the same concentration together with the likely repulsive character of the binding implies that the stacking energy must contain a significant contribution from other processes than simple stacking of adenosines. A generalization of the theory to treat multicomponent binding and longer-range interactions is effected, and the form applicable to simultaneous binding of both adenosine and guanosine by polyuridylic acid is presented.
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    PMR chemical shifts of TFA in poly(γ-benzyl L-glutamate) solutions (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 739-744 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The present communication describes a new way of studying helix-random coil transformations of polypeptide, poly-(γ-benzyl L-glutamate), in benzene-trifluoracetic acid (TFA) and chloroform-TFA systems. The difference between the PMR chemical shift of TFA with and without the polypeptide, measured as Δ, may be used to follow the conformational transition. This technique is particularly useful for concentrated solutions, where the PMR peaks of the polymer are so broad that no valuable information may be derived. As the TFA content increases in the system (at constant polymer concentration), Δ decreases normally whether the polymer is helical or random. However, Δ changes in a different way in the helix-random coil transition region, and actually increases with increasing TFA content. This peculiar behavior is explained in terms of the solvation of the helix and random coil structures.
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    NMR study of the slowly exchanging hydrogens of 640 Å steerskin collagen (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 745-748 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 2 Ill.
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    Solution properties of synthetic polypeptides. VI. Helix-coil transition of poly-N5-(3-hydroxypropyl)-L-glutamine (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 717-738 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new procedure for evaluating u and σ characterizing σ-helix-forming polypeptides in solution was derived from Nagai's theory for the helix-coil transition of such polymers. Here u is the activity for helix formation from random coil, and σ is the helix initiation parameter. The necessary data are the helical content fN at fixed solvent and temperature as a function of N, where N is the degree of polymerization of the polypeptide sample. Such data were obtained from ORD measurements on a number of fractionated samples of poly-N5-(3-hydroxypropyl)-L-glutamine (PHPG) in mixtures of water and methanol covering the complete range of composition and at various termperatures (5-40°C). When analyzed in terms of the proposed procedure, they yielded values of σ which were in the range (3.2 ± 0.6) × 10-4, substantially independent of solvent composition and temperature. These values were much larger than those obtained recently for σ of poly(β-benzyl-L-aspartate) in m-cresol and in a mixture of chloroform and DCA. The data for [η] and s0 (limiting sedimentation coefficient) as functions of molecular weight indicated that the molecular shape of PHPG in pure methanol is essentially rodlike, whereas that in pure water is not entirely randomly coiled but rather may be regarded as an interrupted helix. These indications were consistent with the results from ORD measurements. When plotted against the corresponding values of fN, the values of [η] and [s0] for PHPG in mixtures of water and methanol of various compositions and temperatures formed smooth composite curves, and we attributed these phenomena to the fact that σ of PHPG was nearly constant under these solvent conditions. Here [s0] stands for a reduced limiting sedimentation coefficient which is equal to the inverse friction factor of the solute molecule.
    Additional Material: 17 Ill.
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    Masthead (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970) 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 77
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    Interaction of nucleic acids. VI. Interaction of purine with nucleic acids (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 765-782 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The interaction of purine with DNA, tRNA, poly A, poly C, and poly A. poly U complex was investigated. In the presence of purine, the nucleic acids in coil form (such as denatured DNA, poly A and poly C in neutral solutions, or tRNA) have lower optical rotations. In addition, hydrodynamic studies indicate that in purine solutions the denatured DNA has a higher viscosity and a decreased sedimentation coefficient. These findings indicate that through interaction with purine, the bases along the poly-nucleotide chain are unstacked and are separated farther from each other, resulting in increased assymmetry (and possibly volume) of the whole polymer. Thus, the de-naturation effect of purine reported previously can be explained by this preferential interaction of purine with the bases of nucleic acids in coil form through a hydrophobic-costacking mechanism. Results from studies on optical rotation and helix-coil transition show that the interaction of purine is greater with poly A than with poly C. The influence of temperature, Mg++ concentration, ionic strength, and purine concentration on the effect of purine on nucleic acid conformation has also been investigated. In all these situations the unraveling of nucleic acid conformation occurs at much lower temperatures (20-40°C lower) in the presence of purine (0.2-0.6M).
    Additional Material: 10 Ill.
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    Configurational statistics of polysaccharide chains. Part II. CelluloseContribution No. 286 from Centre of advanced study in physics, University of Madras, India. (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 783-790 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The characteristic ratio of unperturbed cellulose chain was computed as a function of the angle τ at, the bridge oxygen atom and the degree of polymerization. Very high values of the order of 40 or more, depending on the angle at the bridge oxygen atom, have been obtained for this ratio, indicating that cellulose chains are highly extended. The average dimensions of cellulose chains are found to be sensitive even for small changes in the angle at the bridge oxygen, and these chains attain the character of a random coil in very high molecular weight range (degree of polymerization greater than 2000). The large differences in the unperturbed dimensions of cellulosic chains observed in different solvents have been attributed to the possible small changes in the angle τ caused by specific solvent, interactions.
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  • 79
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    Effect of side-chain hydrophobic bonding on the stability of homopolyamino acid α-helices: Conformational studies of poly-L-leucine in waterPresented before the Division of Biological Chemistry at the 154th National Meeting of the American Chemical Society, Chicago, Illinois, September 1967. (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 749-764 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformational properties of block copolymers of poly-L-leucine in water have been examined. The degree of polymerization of the poly-L-leucine block was 11 and 21, respectively, for samples prepared by the Merrifield procedure, and 56 for a sample prepared by the polymerization of leucine N-carboxyanhydride. The optical rotatory dispersion parameter b0 was used to obtain the helix content θh at various temperatures. Application of the Lifson-Roig theory gave the following parameters for the transition of a residue from a coil to a helical state: v = 0.05-0.011, ΔH = +100 cal/mole, ΔS = +0.70-1.00 e. u. These parameters, as well as those for other polyamino acids, are accounted for by hydrophobic bonds involving the nonpolar side chains in the helical and randomly coiled forms. From the data for poly-L-alanine and theoretical values of the thermodynamic parameters for hydrophobic bond formation, the parameters for formation of a polyglycine helix are computed. By separating the contributions of the backbone, it is possible to obtain a set of thermodynamic parameters for the side-chain contributions of a number of polyamino acids. Increased size of the nonpolar side chain (with a larger contribution from hydrophobic bonding) makes a larger contribution to the stability of the α-helix which is reflected, among other ways, in a higher helix content at given temperature.
    Additional Material: 7 Ill.
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    Polymerization of amino acid derivatives by polymer catalysts. V. Polymerization of DL-β-phenylalanine N-carboxyanhydride by several poly(N-alkylamino acid) diethylamides (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 791-797 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The polymerization of DL-β-phenylalanine N-carboxyanhydride (NCA) initiated by poly(N-benzylglycine)diethylamide (DEA) and poly(N-methyl-DL-alanine)DEA has been investigated. As previously reported, polysarcosine DEA, poly-N-ethylglycine DEA, and poly-N-n-propylglycine DEA showed marked accelerations in the polymerization of DL-β-phenylalanine NCA as compared with the polymerization initiated by low molecular weight, amines having similar base strength. However, this phenomenon (the chain effect) was not observed with the two polymer catalysts studied in the present investigation With poly-N-methyl-DL-alanine DEA, adsorption of DL-β-phenylalanine NCA onto the polymer chain takes place, though not so effectively as with other polypeptides, so the absence of chain effect was ascribed to a reduced flexibility of the polymer chain. With poly(N-benzylglycine)DEA, the reactivity of terminal base group was found to be much lower than that of other polymer catalysts. However, the absence of the chain effect would be attributed to the rigidity of polymer chain of poly-N-benzylglycine DEA due to the bulkiness of the N-benzyl group.
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    Ionic polysaccharides. III. Dilute solution properties of hyaluronic acid fractions (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 799-810 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Molecular weights by osmometry (M̄n), light scattering (M̄w), and sedimentation-diffusion (MsD) were determined for selected fractions and unfractionated samples of hyaluronic acid in the molecular weight range 3 × 104-1.7 × 106. For the determination of MsD from the sedimentation coefficient s, a calibration procedure based on the data of Laurent, Ryan, and Pietruszkiewicz gave the following relations in 0.2M NaCl: log (s-1)0 = 14.681 - 0.413 log MsD and log D0 = -3.828 - 0.568 log MsD, where subscript, zero refers to zero concentration and D is the diffusion coefficient. The average Mandelkern-Flory parameter β in 0.2M NaCl is 3.0 × 106. Data for the intrinsic viscosity [η] may be fitted for M 〉 105 by [η] = K′Ma, where K′, a are in 0.2M NaCl, 0.0228, 0.816; in 0.5M NaCl, 0.0318, 0.777; in 0.1 M HCl, 0.0279, 0.763, respectively. Below M = 105, [η] appears to fall below the values calculated, possibly due to non-Gaussian behavior of short chains. The second virial coefficient A2 in 0.5M NaCl approaches the ideal Donnan value, decreasing slightly with increasing molecular weight. The friction parameter P is about 20% smaller than that of uncharged polymers of similar dimensions. The flexible coiling nature of this polymer is confirmed.
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    Sedimentation of ribosomal ribonucleic acid from ribonuclease treated and untreated ribosomes (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 843-864 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The formation of a slowly sedimenting form of 23-S ribosomal RNA from E. coli has been investigated by analytical ultracentrifugation and thermal denaturation in aqueous solution and in formamide. Evidence is presented that the slow form of 23-S arises as a result of nucleate damage to the RNA in the 50-S ribosome. The 30-S ribosome (and 16-S RNA), is unaffected. The slow form of 23-S RNA cannot be demonstrated under conditions of complete denaturation in formamide, but only by partial denaturation in aqueous solution of low ionic strength (〈 0.01M Na). Apparent maintenance of the integrity of 23-S RNA in formamide after nuclease treatment suggests that this may not be a simple linear molecule. An alternative model is suggested containing a circular element in the structure.
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    Mechanochemical study of wet-spun lithium-DNA fibers (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 825-842 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Uniform LiDNA fiber specimens of nearly 20 m length have been prepared with a wet-spinning method developed by the author. Samples immersed in the spinning bath (80% ethyl alcohol containing 0.4M LiCl) have been subjected to mechanochemical study involving stretching, relaxation, and contraction measurements. A special technique was developed to transfer the sample from the Teflon-coated cylinder used in spinning to the sample column of the mechanochemical apparatus without stretching or removing the sample from the spinning bath. Force-strain curves of samples consisting of two fiber bundles showed an initial region of low slope followed by a region of high slope and a second region of low slope up to rupture. Some thicker specimens showed an aging effect which abolished the initial low-slope region and was interpreted as indicative of crystallization. Force-strain curves of two-bundle samples showed a strong influence of temperature with a complete loss of tensile strength of the LiDNA fibers in the spinning bath at about 55°C. Furthermore, samples at zero strain exhibited a contractile force when subjected to temperatures above about 40°C; the contractile process was pronounced with samples kept above 48°C. On contraction these samples obtained a zero-force length 20-30% of the original. These data are taken as evidence for a helix-to-coil transition occurring in the DNA, the low melting temperature being caused by the chemical influence of the ambient aqueous alcohol-LiCl bath.
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    Low-angle light-scattering studies on alkali- and heat-denatured DNA (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1029-1038 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The molecular weight of native DNA is shown to decrease by at least a factor of two on denaturation by heat or alkali. This result is obtained only if low-angle (〈30°) light-scattering measurements are used. High-angle measurements (〉30°) do not reveal a decrease in molecular weight on denaturation due to the incorrect value for native DNA. The dn/dc value for both native and denatured DNA is 0.166 ml/g ± 0.003 ml/g. Methods are described for the clarification of native and denatured DNA solutions for light scattering by the use of membrane filters.
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    Electric dichroism studies: Interaction of trifluoroacetic acid with poly(gamma;-benzyl L-glutamate) (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 991-1000 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electric dichroism studies on poly(γ-benxyl L-glutamate) show that the addition of small amounts (up to 5%) of trifluoroacetic acid causes complete disappearance of dichroism in contrast to the electric birefringence, which drops to an observable plateau at 20% of its initial value. This loss of dichroism cannot be explained simply by a decrease in the effective dipole moment of the benzyl ester side chains, and the nature of this interaction is explored by nuclear magnetic resonance and infrared spectral studies. Theories of the helix-coil transition which require an initial protonation of the helix backbone to form a more flexible rod consisting of helical segments interrupted by regions of random coil are shown to be inadequate to describe the changes in poly(γ-benzyl L-glutamate) effected by small amounts of trifluoroacetic acid. Rather, trifluoroacetic acid in small amounts interacts with the ester carbonyl oxygen in the side chain, either by hydrogen bonding or protonation, before there is evidence of any effect on the backbone or of loss of helix content.
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    Raman spectra of poly-L-lysines (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1229-1237 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Raman spectra of poly-L-lysine hydrochloride and poly-∊-carbobenzoxy-L-lysine in the solid state have been obtained and are consistent with the presence of an α-helical structure. The Raman spectrum of poly-L-lysine in aqueous solution suggests the presence of random coil structures.
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    Backbone and side-chain conformations of amino acids and amino acid residues in peptidesContribution No. 288 from the Centre of Advanced Study in Biophysics, University of Madras, Guindu Campus, Madras-25, India. (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1249-1252 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    Masthead (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970) 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    Conformational studies of linear β-D-1,4′-mannan and galactanContribution No. 289 from the Centre of Advanced Study in Physics, University of Madras, Madras, India. (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1239-1247 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
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    Notes: The nonbonded interaction energy of disaccharides, mannobiose and galactobiose and polysaccharides mannan and galactan have been computed as a function of dihedral angles (φ,ψ). The conformation (40°, -20°) has been preferred for the mannan chain from nonbonded interaction energy considerations. The O5…O3′ type of intramolecular hydrogen bond has been found to be possible in the above conformation. Comparison of the allowed region of mannan with those of cellulose and xylan indicates that the monomer unit, in mannan chain has slightly higher freedom of rotation than that of cellulose and less than that of xylan. As in cellulose and mannan, the freedom of rotation of the monomer units in β-1,4′ galactan is highly restricted. Unlike mannan (which prefers an extended conformation) the β-1,4′ galactan prefers a helical conformation similar to amylose. Just as in amylose the O2…O3′ type hydrogen bond between contiguous residues is also possible in β-1,4′ galactan.
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    Perspectives report: Melting of DNA: Its study and application as a research methodWe are delighted to include this article in Biopolymers since it includes the important Russian literature in this area. The Editors. (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1253-1306 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 23 Ill.
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    Critical comparison of the experimental optical activity of helical polypeptides and the predictions of the molecular exciton model (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1475-1502 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The predictions of the presently accepted molecular exciton model for the optical activity of helical polypeptides are in reasonable agreement with experimental spectra in the accessible wavelength range. However, crucial verification requires the detect of a significant negative rotatory hand just below the accessible range. A computer-oriented method is utilized to obtain information concerning the inaccessible range. Optical rotatory dispersion computed by evaluation of the Kronig-Kramers integral transform from the experimentally determined circular dichroism of several helical homopolypeptides in solution are compared with the experimentally determined optical rotatory dispersion. Computed and experimental curves are congruent within an uncertainty approaching that of the experimental technique, whatever the polypeptide sample lot, side chains, and solvent. It is shown that t his agreement is not a computational or experimental artifact. These results can be interpreted in two ways: (1) that the predicted band does not exist, and (2) that the perturbation of the predicted band is being negated by other inaccessible bands in the vacuum ultraviolet. Arguments are presented to show that the first of these two possibilities is more probable.
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    Electrophoretic charge of a cylindrical macroion in aqueous 1 : 1 electrolyte (1970)
    New York : Wiley-Blackwell
    Biopolymers 9 (1970), S. 1511-1530 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Notes: The potential problem is formulated for rodlike macroions and reduced to a single dimensionless equation with appropriate boundary conditions. A method of solution based on piecewise linearization of the potential equation is detailed and compared with two other approaches. It is suggested that the present method yields improved estimates of macroion charges. Some numerical results are included, and the relation between electrophoretic charge and macroion charge is considered.
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    Flexibility of tropocollagen from sedimentation and viscosity (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 53-64 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Sedimentation constant and intrinsic viscosity were measured on purified tropocollagens extracted from earthworm-cuticle and lathyritic ratskin. A cartesian diver viscometer was used to make viscosity measurements at small shear stress and to avoid the effects of surface forces. By comparing the experimental data with the hydrodynamic theories of wormlike-coil of Ullman a value of 1300 Å has been assigned for the persistence length of these tropocollagens. Other factors which may affect the estimate are discussed.
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    Temperature dependence of CD spectra of DNA from various sources (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 45-51 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The CD spectra of DNA from various sources (T2; T4; Cd; Escherichia coli; calf thymus; Streptomyces chrysomalis) were investigated. A new band Δε210 in the CD spectra of glucosylated DNA of the T even phages was found. The temperature dependence of the CD spectra of DNA was obtained over a wide range of temperatures, including those of the helix-coil transition.The band Δε275 for all DNAs does not appreciably change in the range of the helix-coil transition. The monotonic increase of this band before melting, and its decrease after melting is observed with an increase in temperature.The amplitude of the CD band Δε245 for all the DNAs studied and Δε210 (glucosylated DNA) parallels the change of E260 absorbance.
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    Extended conformations of polypeptides and proteins in urea and guanidine hydrochloride (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 575-587 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By analyzing the effect of urea and guanidine hydrochloride on the circular dichroism of many polypeptides and proteins, it is concluded that under conditions of high concentration of the perturbant and at low temperatures the resultant state approached is that of a local extended helix structure instead of a completely random coil. Intensification by urea and guanidine hydrochloride of the circular dichroism bands of poly-L-proline II leads to the proof that the mechanism of interaction of urea and guanidine hydrochloride with proteins is through hydrogen bonding to the backbone carbonyl group.
    Additional Material: 9 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1973.360120310
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  • 96
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    Interactions between chondroitin-6-sulfate and poly-L-lysine in aqueous solution: Circular dichroism studies (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 541-558 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The interactions between chondroitin-6-sulfate (chondroitin sulfate C) and poly-L-lysine have been studied as models for investigation of possible complex formation between fibrous proteins and mucopolysaccharides. Results obtained using circular dichroism spectroscopy show that poly-L-lysine adopts the α-helical conformation in dilute aqueous salt solution at pH 7 when mixed with chondroitin-6-sulfate, rather than the “charged-coil” observed in the absence of this mucopolysaccharide. This conformation-directing interaction is at a maximum when the ratio of lysine to disaccharide residues is 1 : 1. Changes in the CD spectrum of a 1 : 1 mixture following increase in the salt concentration, or addition of non-polar solvents, indicate that the interaction is ionic in nature. No such effects are observed for non-sulfated mucopolysaccharides mixed with poly-L-lysine, suggesting that, for chondroitin-6-sulfate, it is the sulfate groups rather than the carboxyls which interact with the amine groups of the polypeptide.Elevation of the temperature leads to disruption of the interactions between the polypeptide and polysaccharide species. A sharp melting transition occurs at 47.0 ± 1.0°C, when the poly-L-lysine reverts to the “charged-coil” conformation. The sharp transition suggests that regular ionic bonds are formed between the polypeptide and polysaccharide. These results suggest that a conformation-directing interaction may occur between sulfated mucopolysaccharides and the polar regions of collagen and other fibrous proteins.
    Additional Material: 14 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1973.360120308
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  • 97
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    A dihedral angle-vicinal proton coupling constant correlation for the α-β bond of amino acid residues (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 627-636 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A coupling constant-dihedral angle correlation for the H—Cα—Cβ—H system of amino acid residues in peptides has been derived from a set of model compounds covering the full range of dihedral angles. The expression obtained, J = 11.0 cos2 θ -1.4 cos θ + 1.6 sin2θ, is close to those already used in pmr studies of peptide conformation, and provides a firmer foundation for them. A factor limiting the precision of this and other “Karplus relations” is illustrated.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1973.360120314
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  • 98
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    Ultraviolet circular dichroism of polyproline and oriented collagen (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 655-674 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ultraviolet absorption, linear dichroism, circular dichroism, and oriented circular dichroism of collagen are reported and the spectra are resolved into a self-consistent set of bands in accord with exciton theory. The parallel band at 200 nm has 40% of the π → π* intensity; the perpendicular band is placed at 189 nm yielding a splitting of 2700 cm-1. The circular dichroism is resolved into two Gaussians at λ∥ and λτ (rotational strengths +14 × 10-40 and -32 × 10-40 esu2. cm2) plus a large non-Gaussian (“helix”) band with ampplitude -25,000° at 201 nm. These data appear to be in reasonably good accord with recent calculations.Measurements of the absorption, linear dichroism and circular dichroism of polyproline I and II are also reported and are resolved into their component bands. Polyproline I is in good accord with exciton theory, whereas polyproline II remains unsatisfactory.
    Additional Material: 11 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1973.360120317
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  • 99
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    Studies on cytochrome c. Part VII. Synthesis of the protected undecapeptide (sequence 82-92) of Baker's yeast iso-I-cytochrome cThe amino acid residues are of the L-configuration. For a simpler description the customary L-designation for individual amino acid residues is omitted. Standard abbreviations for amino acid derivatives and peptides are used according to the suggestion of the IUPAC-IUB Commission on Biochemical Nomenclature, European J. Biochem., 1,375 (1987); for other abbreviations used see Ref. 2. (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 721-728 
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The synthesis is described of the N-benzyloxycarbonylundecapeptide tert-butoxycarbonylhydrazide corresponding to the sequence 82-92 of baker's yeast iso-I-cytochrome c.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1973.360120404
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  • 100
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    Studies on cytochrome c. Part VIII. Synthesis of the protected hexadecapeptide (sequence 93-108) of Baker's yeast iso-1-cytochrome cThe amino acid residues are of L-configuration. For a simpler description the customary L-designation for individual amino acid residues is omitted. Standard abbreviations for amino acid derivatives and peptides are used according to the IUPAC-IUB Commission on Biochemical Nomenclature, European J. Biochem., 1, 375 (1967). Moreover ONpo = o-nitrophenyl; Adoc = adamantyloxycarbonyl; for other abbreviations used see Ref. 5. (1973)
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 729-750 
    Details
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The synthesis is described of the protected hexadecapeptide corresponding to the C-terminal sequence 93-108 of baker's yeast iso-I-cytochrome c. The cysteine residue in position 107 of the natural sequence has been substituted by a threonine residue. The rationale of this substitution as well as the synthetic route to the preparation of the hexadecapeptide derivative is discussed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/bip.1973.360120405
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