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  • Climate change  (4)
  • Phytoplankton  (4)
  • Cetacean  (3)
  • Antarctic bacterioplankton
  • American Institute of Physics (AIP)
  • Inter-Research
  • Nature Publishing Group
  • 1
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    Avoiding pitfalls in interdisciplinary education (2018)
    Inter-Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Climate Research 74 (2017): 121-129, doi:10.3354/cr01491.
    Description: As the world’s social-environmental problems increasingly extend across boundaries, both disciplinary and political, there is a growing need for interdisciplinarity, not only in research per se, but also in doctoral education. We present the common pitfalls of interdisciplinary research in doctoral education, illustrating approaches towards solutions using the Nordic Centre for Research on Marine Ecosystems and Resources under Climate Change (NorMER) research network as a case study. We provide insights and detailed examples of how to overcome some of the challenges of conducting interdisciplinary research within doctoral studies that can be applied within any doctoral/postdoctoral education programme, and beyond. Results from a self-evaluation survey indicate that early-career workshops, annual meetings and research visits to other institutions were the most effective learning mechanisms, whereas single discipline-focused courses and coursework were among the least effective learning mechanisms. By identifying the strengths and weaknesses of components of NorMER, this case study can inform the design of future programmes to enhance interdisciplinarity in doctoral education, as well as be applied to science collaboration and academic research in general.
    Keywords: Climate change ; Interdisciplinarity ; Education ; Learning mechanisms ; Research network
    Repository Name: Woods Hole Open Access Server
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  • 2
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    Discrimination between bycatch and other causes of cetacean and pinniped stranding (2018)
    Inter-Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Diseases of Aquatic Organisms 127 (2018): 83-95, doi:10.3354/dao03189.
    Description: The challenge of identifying cause of death in discarded bycaught marine mammals stems from a combination of the non-specific nature of the lesions of drowning, the complex physiologic adaptations unique to breath-holding marine mammals, lack of case histories, and the diverse nature of fishing gear. While no pathognomonic lesions are recognized, signs of acute external entanglement, bulging or reddened eyes, recently ingested gastric contents, pulmonary changes, and decompression-associated gas bubbles have been identified in the condition of peracute underwater entrapment (PUE) syndrome in previous studies of marine mammals. We reviewed the gross necropsy and histopathology reports of 36 cetaceans and pinnipeds including 20 directly observed bycaught and 16 live stranded animals that were euthanized between 2005 and 2011 for lesions consistent with PUE. We identified 5 criteria which present at significantly higher rates in bycaught marine mammals: external signs of acute entanglement, red or bulging eyes, recently ingested gastric contents, multi-organ congestion, and disseminated gas bubbles detected grossly during the necropsy and histologically. In contrast, froth in the trachea or primary bronchi, and lung changes (i.e. wet, heavy, froth, edema, congestion, and hemorrhage) were poor indicators of PUE. This is the first study that provides insight into the different published parameters for PUE in bycatch. For regions frequently confronted by stranded marine mammals with non-specific lesions, this could potentially aid in the investigation and quantification of marine fisheries interactions.
    Description: This work was supported by the Nat - ional Oceanic and Atmospheric Administration (NOAA) John H. Prescott Program NA12NMF4390144. The WHOI Marine Mammal Center, Wick and Sloan Simmons, and the University of Las Palmas de Gran Canaria provided postdoctoral funding for Y.B.Q.
    Keywords: Bycatch ; Gas bubbles ; Stranding ; Cetacean ; Pinniped ; Fishery ; Peracute underwater entrapment
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  • 3
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    Effect of continental shelf canyons on phytoplankton biomass and community composition along the western Antarctic Peninsula (2015)
    Inter-Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Ecology Progress Series 524 (2015): 11-26, doi:10.3354/meps11189.
    Description: The western Antarctic Peninsula is experiencing dramatic climate change as warm, wet conditions expand poleward and interact with local physics and topography, causing differential regional effects on the marine ecosystem. At local scales, deep troughs (or canyons) bisect the continental shelf and act as conduits for warm Upper Circumpolar Deep Water, with reduced seasonal sea ice coverage, and provide a reservoir of macro- and micronutrients. Shoreward of many canyon heads are Adélie penguin breeding colonies; it is hypothesized that these locations reflect improved or more predictable access to higher biological productivity overlying the canyons. To synoptically assess the potential impacts of regional bathymetry on the marine ecosystem, 4 major canyons were identified along a latitudinal gradient west of the Antarctic Peninsula using a high-resolution bathymetric database. Biological-physical dynamics above and adjacent to canyons were compared using in situ pigments and satellite-derived sea surface temperature, sea ice and ocean color variables, including chlorophyll a (chl a) and fucoxanthin derived semi-empirically from remote sensing reflectance. Canyons exhibited higher sea surface temperature and reduced sea ice coverage relative to adjacent shelf areas. In situ and satellite-derived pigment patterns indicated increased total phytoplankton and diatom biomass over the canyons (by up to 22 and 35%, respectively), as well as increases in diatom relative abundance (fucoxanthin:chl a). While regional heterogeneity is apparent, canyons appear to support a phytoplankton community that is conducive to both grazing by krill and enhanced vertical export, although it cannot compensate for decreased biomass and diatom relative abundance during low sea ice conditions.
    Description: We acknowledge support from the National Aeronautics and Space Administration Ocean Bio - logy and Biogeochemistry Program (NNX14AL86G) and the National Science Foundation Polar Programs awards 0823101 (Antarctic Organisms and Ecosystems Program) and 1440435 (Antarctic Integrated System Science) to the Palmer LTER program.
    Keywords: Western Antarctic Peninsula ; Canyons ; Phytoplankton ; Diatoms ; Remote sensing ; Adélie penguin habitat ; Sea ice
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Parasitic infection of the diatom Guinardia delicatula, a recurrent and ecologically important phenomenon on the New England Shelf (2014)
    Inter-Research
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    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2014. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 503 (2014): 1-10, doi:10.3354/meps10784.
    Description: Plankton images collected by Imaging FlowCytobot from 2006 to 2013 at the Martha’s Vineyard Coastal Observatory (Massachusetts, USA) were used to identify and quantify the occurrence of the diatom Guinardia delicatula and of a parasite that seems specific to this host. We observed infection with morphological stages that appear similar to the parasite Cryothecomonas aestivalis. Our results show that events during which infection rates exceed 10% are recurrent on the New England Shelf and suggest that the parasites are an important source of host mortality. We document a significant negative relationship between bloom magnitude and parasite infection rate, supporting the hypothesis that the parasites play a major role in controlling blooms. While G. delicatula is observed during all seasons, the infecting stages of the parasite are abundant only when water temperature is above 4°C. The anomalously warm water and small G. delicatula bloom during the winter of 2012 provided evidence that parasites can be active through winter if temperatures remain relatively high. As climate change continues, winter periods of water below 4°C may shorten or disappear in this region, suggesting that parasite effects on species such as G. delicatula may increase, with immediate impacts on their population dynamics.
    Description: This work was supported by grants from NSF’s Ocean Technology and Interdisciplinary Coordination program, NASA’s Ocean Biology and Biogeochemistry program and Biodiversity and Ecological Forecasting program, the Gordon and Betty Moore Foundation, and the National Ocean Partnership Program.
    Keywords: Phytoplankton ; Diatom ; Parasite ; Imaging flow cytometry ; MVCO ; Guinardia delicatula ; Cryothecomonas aestivalis
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Carbon fluxes and pelagic ecosystem dynamics near two western Antarctic Peninsula Adélie penguin colonies : an inverse model approach (2013)
    Inter-Research
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Ecology Progress Series 492 (2013): 253-272, doi:10.3354/meps10534.
    Description: An inverse food-web model for the western Antarctic Peninsula (WAP) pelagic food web was constrained with data from Palmer Long Term Ecological Research (PAL-LTER) project annual austral summer sampling cruises. Model solutions were generated for 2 regions with Adélie penguin Pygoscelis adeliae colonies presenting different population trends (a northern and a southern colony) for a 12 yr period (1995-2006). Counter to the standard paradigm, comparisons of carbon flow through bacteria, microzooplankton, and krill showed that the diatom-krill-top predator food chain is not the dominant pathway for organic carbon exchanges. The food web is more complex, including significant contributions by microzooplankton and the microbial loop. Using both inverse model results and network indices, it appears that in the northern WAP the food web is dominated by the microbial food web, with a temporal trend toward its increasing importance. The dominant pathway for the southern WAP food web varies from year to year, with no detectable temporal trend toward dominance of microzooplankton versus krill. In addition, sensitivity analyses indicated that the northern colony of Adélie penguins, whose population size has been declining over the past 35 yr, appears to have sufficient krill during summer to sustain its basic metabolic needs and rear chicks, suggesting the importance of other processes in regulating the Adélie population decline.
    Description: We acknowledge support from the National Science Foundation, Office of Polar Programs, Award 0823101 (Antarctic Organisms and Ecosystems Program) to Palmer LTER.
    Keywords: Inverse model ; Food web ; Antarctica ; Microzooplankton ; Krill ; Ecosystem state change ; Climate change
    Repository Name: Woods Hole Open Access Server
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  • 6
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    Direct interaction between the Gulf Stream and the shelfbreak south of New England (2012)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 2 (2012): 553, doi:10.1038/srep00553.
    Description: Sea surface temperature imagery, satellite altimetry, and a surface drifter track reveal an unusual tilt in the Gulf Stream path that brought the Gulf Stream to 39.9°N near the Middle Atlantic Bight shelfbreak—200 km north of its mean position—in October 2011, while a large meander brought Gulf Stream water within 12 km of the shelfbreak in December 2011. Near-bottom temperature measurements from lobster traps on the outer continental shelf south of New England show distinct warming events (temperature increases exceeding 6°C) in November and December 2011. Moored profiler measurements over the continental slope show high salinities and temperatures, suggesting that the warm water on the continental shelf originated in the Gulf Stream. The combination of unusual water properties over the shelf and slope in late fall and the subsequent mild winter may affect seasonal stratification and habitat selection for marine life over the continental shelf in 2012.
    Description: Profiler data were made available by the Ocean Observatory Initiative (OOI) during the construction phase of the project. The OOI is funded by the National Science Foundation and managed by the Consortium for Ocean Leadership. Drifter data were provided by Tim Shaw and David Calhoun at Cape Fear Community College.GGGwas supported by NSFGrant OCE-1129125. RET was supported by the Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution, with funding provided by the Cooperative Institute for the North Atlantic Region. MA was supported by the Penzance Endowed Fund in Support of Assistant Scientists.
    Keywords: Ecology ; Climate change ; Atmospheric science ; Oceanography
    Repository Name: Woods Hole Open Access Server
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  • 7
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    A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters (2012)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in The ISME Journal 6 (2012): 1901-1915, doi:10.1038/ismej.2012.31.
    Description: Antarctic surface oceans are well-studied during summer when irradiance levels are high, sea ice is melting and primary productivity is at a maximum. Coincident with this timing, the bacterioplankton respond with significant increases in secondary productivity. Little is known about bacterioplankton in winter when darkness and sea-ice cover inhibit photoautotrophic primary production. We report here an environmental genomic and small subunit ribosomal RNA (SSU rRNA) analysis of winter and summer Antarctic Peninsula coastal seawater bacterioplankton. Intense inter-seasonal differences were reflected through shifts in community composition and functional capacities encoded in winter and summer environmental genomes with significantly higher phylogenetic and functional diversity in winter. In general, inferred metabolisms of summer bacterioplankton were characterized by chemoheterotrophy, photoheterotrophy and aerobic anoxygenic photosynthesis while the winter community included the capacity for bacterial and archaeal chemolithoautotrophy. Chemolithoautotrophic pathways were dominant in winter and were similar to those recently reported in global ‘dark ocean’ mesopelagic waters. If chemolithoautotrophy is widespread in the Southern Ocean in winter, this process may be a previously unaccounted carbon sink and may help account for the unexplained anomalies in surface inorganic nitrogen content.
    Description: CSR was supported by an NSF Postdoctoral Fellowship in Biological Informatics (DBI-0532893). The research was supported by National Science Foundation awards: ANT 0632389 (to AEM and JJG), and ANT 0632278 and 0217282 (to HWD), all from the Antarctic Organisms and Ecosystems Program.
    Keywords: Antarctic bacterioplankton ; Metagenomics ; Chemolithoautotrophy
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  • 8
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    Benthic community response to ice algae and phytoplankton in Ny Ålesund, Svalbard (2011)
    Inter-Research
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    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2006. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 310 (2006): 1-14, doi:10.3354/meps310001.
    Description: We assessed the digestibility and utilization of ice algae and phytoplankton by the shallow, subtidal benthos in Ny Ålesund (Kongsfjord) on Svalbard (79°N, 12°E) using chlorophyll a (chl a), essential fatty acids (EFAs) and stable isotopes as tracers of food consumption and assimilation. Intact benthic communities in sediment cores and individuals of dominant benthic taxa were given ice algae, phytoplankton, 13C-enriched ice algae or a no food addition control for 19 to 32 d. Ice algae and phytoplankton had significantly different isotopic signatures and relative concentrations of fatty acids. In the food addition cores, sediment concentrations of chl a and the EFA C20:5(n-3) were elevated by 80 and 93%, respectively, compared to the control after 12 h, but decreased to background levels by 19 d, suggesting that both ice algae and phytoplankton were rapidly consumed. Whole core respiration rates in the ice algae treatments were 1.4 times greater than in the other treatments within 12 h of food addition. In the ice algae treatment, both suspension and deposit feeding taxa from 3 different phyla (Mollusca, Annelida and Sipuncula) exhibited significant enrichment in δ13C values compared to the control. Deposit feeders (15% uptake), however, exhibited significantly greater uptake of the 13C-enriched ice algae tracer than suspension feeders (3% uptake). Our study demonstrates that ice algae are readily consumed and assimilated by the Arctic benthos, and may be preferentially selected by some benthic species (i.e. deposit feeders) due to their elevated EFA content, thus serving as an important component of the Arctic benthic food web.
    Description: Funding for this study came from the National Science Foundation (Grant numbers OPP- 0514115 to W.G.A.; OPP-0222410 to L.M.C.; OPP-0222408 to M.-Y.S.; OPP0222500 to G.R.L.), the Norwegian Research Council (Grant number 151815-720 to M.L.C.), the Howard Hughes Medical Institute through Bates College and the Maine Marine Research Fund.
    Keywords: Ice algae ; Phytoplankton ; Food quality ; Arctic benthos ; Climate change ; Stable isotopes ; Essential fatty acids ; Svalbard
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  • 9
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    Lethal entanglement in baleen whales (2011)
    Inter-Research
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    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2011. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Diseases of Aquatic Organisms 96 (2011): 175-185, doi:10.3354/dao02385.
    Description: Understanding the scenarios whereby fishing gear entanglement of large whales induces mortality is important for the development of mitigation strategies. Here we present a series of 21 cases involving 4 species of baleen whales in the NW Atlantic, describing the available sighting history, necropsy observations, and subsequent data analyses that enabled the compilation of the manners in which entanglement can be lethal. The single acute cause of entanglement mortality identified was drowning from entanglement involving multiple body parts, with the animal’s inability to surface. More protracted causes of death included impaired foraging during entanglement, resulting in starvation after many months; systemic infection arising from open, unresolved entanglement wounds; and hemorrhage or debilitation due to severe gear-related damage to tissues. Serious gear-induced injury can include laceration of large vessels, occlusion of the nares, embedding of line in growing bone, and massive periosteal proliferation of new bone in an attempt to wall off constricting, encircling lines. These data show that baleen whale entanglement is not only a major issue for the conservation of some baleen whale populations, but is also a major concern for the welfare of each affected individual.
    Description: This case report analysis was supported in part by NOAA Cooperative Agreement No. NA09OAR4320129. Stranding response was supported by multiple NOAA Prescott awards to UNC Wilmington, Virginia Aquarium & Marine Science Center, the Cape Cod Stranding Network and Woods Hole Oceanographic Institution (WHOI).
    Keywords: Baleen whales ; Entanglement ; Mortality ; Cetacean ; Strandings ; Fishing gear ; Necropsy ; Northwestern Atlantic
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  • 10
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    Victims or vectors : a survey of marine vertebrate zoonoses from coastal waters of the Northwest Atlantic (2011)
    Inter-Research
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    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2008. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Diseases of Aquatic Organisms 81 (2008): 13-38, doi:10.3354/dao01936.
    Description: Surveillance of zoonotic pathogens in marine birds and mammals in the Northwest Atlantic revealed a diversity of zoonotic agents. We found amplicons to sequences from Brucella spp., Leptospira spp., Giardia spp. and Cryptosporidium spp. in both marine mammals and birds. Avian influenza was detected in a harp seal and a herring gull. Routine aerobic and anaerobic culture showed a broad range of bacteria resistant to multiple antibiotics. Of 1460 isolates, 797 were tested for resistance, and 468 were resistant to one or more anti-microbials. 73% (341/468) were resistant to 1–4 drugs and 27% (128/468) resistant to 5–13 drugs. The high prevalence of resistance suggests that many of these isolates could have been acquired from medical and agricultural sources and inter-microbial gene transfer. Combining birds and mammals, 45% (63/141) of stranded and 8% (2/26) of by-caught animals in this study exhibited histopathological and/or gross pathological findings associated with the presence of these pathogens. Our findings indicate that marine mammals and birds in the Northwest Atlantic are reservoirs for potentially zoonotic pathogens, which they may transmit to beachgoers, fishermen and wildlife health personnel. Conversely, zoonotic pathogens found in marine vertebrates may have been acquired via contamination of coastal waters by sewage, run-off and agricultural and medical waste. In either case these animals are not limited by political boundaries and are therefore important indicators of regional and global ocean health.
    Description: This paper is a result of research funded by the National Oceanic and Atmospheric Administration (NOAA) Coastal Ocean Program under award NA05NOS4781247, the NOAA John H. Prescott Program NA05NMF4391165 and NAO6NMF4390130, and the International Fund for Animal Welfare to the Woods Hole Oceanographic Institution. Support was also provided by awards NSF OCE-0430724 and NIEHS P50ES012742 to the Woods Hole Center for Ocean and Human Health.
    Keywords: Zoonosis ; Vertebrate ; Northwest Atlantic ; Pinniped ; Cetacean ; Bird
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  • 11
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    Total and phytoplankton mediated bottom-up control of bacterioplankton change with temperature in NE Atlantic shelf waters (2011)
    Inter-Research
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    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2010. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 58 (2010): 229-239, doi:10.3354/ame01374.
    Description: The regulation of heterotrophic bacterial growth by resource supply (bottom-up control) was temperature-dependent in our analysis of data obtained during 2006 in the euphotic layer of the southern Bay of Biscay (NE Atlantic) continental shelf. The dataset was split into 2 subgroups using 16°C as the boundary between warm and cool waters based on differences in associated physico-chemical conditions, e.g. inorganic nutrient limitation at higher temperatures. The linear regressions between bacterial biomass (BB) and leucine incorporation rates (LIR) were significantly positive in both temperature regimes, thus indicating similar total bottom-up control, albeit with a slightly higher slope in warm waters (0.33 vs. 0.22). However, the relationship of LIR with phytoplankton biomass (chl a), which is an indicator of bottom-up control that is mediated by phytoplankton, was only significant in waters below 16°C. The analysis of bimonthly variations in the BB-LIR and LIR-chl a correlations indicated that the strength of total bottom-up control significantly increased while the role of phytoplankton in supplying DOM to bacteria diminished with mean temperatures over the 12 to 19°C range, suggesting a seasonal switch in the major source of substrates used by bacteria. We show that the abundance of cells with relatively high nucleic acid content (HNA), which are hypothesized to be the most active ones, was positively associated with bacterial production and specific growth rates in cool but not in warm conditions. These results suggest that HNA bacteria are good predictors of bulk activity and production in temperate ecosystems only when the community relies principally on phytoplankton substrates for growth and metabolism.
    Description: X.A.G.M. was partially supported by a sabbatical grant at the MBL from the Spanish Ministry of Education and Science (MEC) and A.C.-D. received an FPI research training predoctoral fellowhip. This work was supported by the time-series project RADIALES from the Instituto Espanol de Oceanografia (IEO).
    Keywords: Bacterioplankton ; Bottom-up control ; Temperature ; Bacterial biomass ; Bacterial activity ; Phytoplankton ; Coastal waters
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