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  • Community structure  (3)
  • Cell & Developmental Biology
  • General Chemistry
  • Limnology
  • Inter-Research  (4)
  • 2010-2014  (4)
  • 1990-1994
  • 1955-1959
  • 1945-1949
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  • 2010-2014  (4)
  • 1990-1994
  • 1955-1959
  • 1945-1949
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  • 1
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    A simplified age-stage model for copepod population dynamics (2012)
    Inter-Research
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2008. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 360 (2008): 179-187, doi:10.3354/meps07314.
    Description: Complex 3D biological-physical models are becoming widely used in marine and freshwater ecology. These models are highly valued synthesizing tools because they provide insights into complex dynamics that are difficult to understand using purely empirical methods or theoretical analytical models. Of particular interest has been the incorporation of concentration-based copepod population dynamics into 3D physical transport models. These physical models typically have large numbers of grid points and therefore require a simplified biological model. However, concentration-based copepod models have used a fine resolution age-stage structure to prevent artificially short generation times, known as numerical ‘diffusion.’ This increased resolution has precluded use of age-stage structured copepod models in 3D physical models due to computational constraints. In this paper, we describe a new method, which tracks the mean age of each life stage instead of using age classes within each stage. We then compare this model to previous age-stage structured models. A probability model is developed with the molting rate derived from the mean age of the population and the probability density function (PDF) of molting. The effects of temperature and mortality on copepod population dynamics are also discussed. The mean-age method effectively removes the numerical diffusion problem and reproduces observed median development times (MDTs) without the need for a high-resolution age-stage structure. Thus, it is well-suited for finding solutions of concentration-based zooplankton models in complex biological-physical models.
    Description: This work was supported by US GLOBEC NOAA grant NA17RJ1223.
    Description: 2013-05-22
    Keywords: Plankton ; Copepods ; Modeling ; Marine ecology ; Oceanography ; Limnology ; Methodology ; Mean age
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
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    Epifaunal community structure associated with Riftia pachyptila aggregations in chemically different hydrothermal vent habitats (2011)
    Inter-Research
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2005. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 305 (2005): 67-77, doi:10.3354/meps305067.
    Description: The vestimentiferan tubeworm Riftia pachyptila (Polychaeta: Sibloglinidae) often dominates early succession stages and high productivity habitats at low-temperature hydrothermal vents on the East Pacific Rise. We collected 8 aggregations of R. pachyptila and the associated epifaunal community at 2 discrete sites of diffuse hydrothermal activity, in December 2001 and December 2002. Because of the high spatial and temporal variability of the biotic and abiotic factors related to hydrothermal vent activity, significant differences in the structure and the composition of the community were expected to occur at the scale of either 1 yr or 500 m distance between very different sites. There was no significant difference in the temperature ranges of the diffuse flow between sites or years, even though the environmental conditions were very different at the 2 sites. At 1 site (Riftia Field), the diffuse hydrothermal fluids had relatively low concentrations of sulfide, low pH, and high concentrations of iron. At the other site (Tica), the diffuse hydrothermal fluids had higher sulfide concentrations, the pH was closer to neutral, and iron was undetectable. The physiological condition of R. pachyptila appeared to reflect the availability of sulfide at each site. However, the structure and the composition of the epifaunal community were remarkably similar between sites and years, with the exception of a few species. Aggregations of R. pachyptila support high local species diversity relative to the surrounding seafloor and high community similarity in different hydrothermal vent habitats.
    Description: This work was funded by the National Science Foundation (OCE-0002729 to C.R.F.). Additional financial support was provided by IFREMER and the European Community (Ventox project EVK3- 1999-00056P to N.L.B) and the Austrian Science Foundation (FWF P16774-B03 to M. Bright).
    Keywords: Hydrothermal vent ; East Pacific Rise ; Riftia pachyptila ; Community structure ; Epifauna ; Benthos
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Community structure of marine sedimentary protists in relation to flow and grain size (2011)
    Inter-Research
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2007. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 48 (2007): 91-104, doi:10.3354/ame048091.
    Description: Populations of unicellular, marine sedimentary protists are constrained by a variety of physical environmental factors, but influences of flow regime have rarely been studied. We compared community structure among 3 subtidal sites differing in flow strength and grain size in a coastal bay. We used denaturing gradient gel electrophoresis (DGGE) to assess eukaryotic diversity based on 18S rDNA, and quantitative Protargol staining (QPS) to examine ciliate communities by microscopy. Sedimentary 18S rDNA in mid-summer was dominated by diatoms. Analyses of gel bands by presence/ absence among sites, dendogram, and multidimensional scaling showed that eukaryotic community structure was related to grain size more strongly than to flow regime. Among bands identified as diatoms by recovery and sequence analysis, 4 taxa (40%) differed among sites in relation to flow strength, and 2 taxa (29%) differed in relation to grain size. No bands had sequences matching ciliates, but QPS showed that 6 ciliate species (20%) were distributed in relation to flow, and 10 species (33%), in relation to grain size. Ciliate species richness and community similarity were greatest for the 2 strong-flow sites, despite differences in mean grain size. The strong-flow, silty site had the highest concentrations of chlorophyll a, total ciliates, karyorelictids, and scuticociliates, and the lowest ciliate species diversity. DGGE was run again for this site 1 mo later and revealed a shift in the rDNA pool to dominance by metazoans. Flow regime and grain size may be important factors structuring subtidal communities of sedimentary protists.
    Description: This work was supported by Franklin & Marshall College and the Woods Hole Center for Oceans and Human Health (NIEHS P50 ES012742 & NSF OCE0430724).
    Keywords: Ciliates ; Diatoms ; Benthic ; Community structure ; Flow ; Grain size ; DGGE
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Bathymetric zonation of deep-sea macrofauna in relation to export of surface phytoplankton production (2011)
    Inter-Research
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2010. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 399 (2010): 1-14, doi:10.3354/meps08388.
    Description: Macrobenthos of the deep, northern Gulf of Mexico (GoM) was sampled with box cores (0.2 m2) along multiple cross-depth transects extending from depths of 200 m to the maximum depth of the basin at 3700 m. Bathymetric (depth) zonation of the macrofaunal community was documented for 6 major taxa (a total of 957 species) on the basis of shared species among geographic locations; 4 major depth zones were identified, with the 2 intermediate-depth zones being divided into east and west subzones. Change of faunal composition with depth reflects an underlying continuum of species replacements without distinct boundaries. The zonal patterns correlated with depth and detrital particulate organic carbon (POC) export flux estimated from remotely-sensed phytoplankton pigment concentrations in the surface water. The Mississippi River and its associated mesoscale eddies, submarine canyon, and deep sediment fan appear to influence the horizontal zonation pattern through export of organic carbon from the ocean surface and the adjacent continental margin. On the local scale, near-bottom currents may shape the zonation pattern by altering sediment grain size, food availability, and larval dispersal. This study suggests a macroecological relationship between depth, export POC flux, and zonation; parsimonious zonal thresholds need to be tested independently for other continental margin ecosystems.
    Description: This research was funded by the U.S. Department of Interior, Minerals Management Service, Contract No. 1435-01-99-CT-30991.
    Keywords: Northern Gulf of Mexico ; Deep sea ; Macrofauna ; Zonation ; Biogeography ; Community structure ; POC export flux ; Macroecology
    Repository Name: Woods Hole Open Access Server
    Type: Article
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