ALBERT

Description: Tephra provides regional chronostratigraphical marker horizons that can link different climate archives with highly needed accuracy and precision. The results presented in this work exemplify, however, that the intermittent storage of tephra in ice sheets and during its subsequent iceberg transport, especially during glacial stages, constitutes a potential source of serious error for the application of tephrochronology to Nordic Seas and North Atlantic sediment archives. The peak shard concentration of the rhyolitic component of the North Atlantic Ash Zone II (NAAZ-II) tephra complex, often used to correlate marine and ice core records in Marine Isotope Stage (MIS) 3, is shown to lag the eruption event by ca. 100–400 years in some North Atlantic and Norwegian Sea cores. While still allowing for a correlation of archives on millennial timescales, this time delay in deposition is a major obstacle when addressing the lead–lag relationship on short timescales (years to centuries). A precise and accurate determination of lead–lag relationships between archives recording different parts of the climate system is crucial in order to test hypotheses about the processes leading to abrupt climate change and to evaluate results from climate models. Copyright # 2011 John Wiley & Sons, Ltd.

Description: Growth rates of the cold-water corals (CWC) Madrepora oculata, Lophelia pertusa, Desmophyllum dianthus and Dendrophyllia cornigera were measured over 8 mo under controlled conditions (12°C in the dark, fed 5 times a week) by means of the buoyant weight technique. Additionally, linear growth rates were measured in M. oculata and L. pertusa for 2 and 1 yr, respectively. The weight measurements revealed growth rates, expressed as percent growth per day (mean ± SD), of 0.11 ± 0.04 for M. oculata, 0.02 ± 0.01 for L. pertusa, 0.06 ± 0.03 for D. dianthus and 0.04 ± 0.02 % d–1 for D. cornigera. Growth in M. oculata was significantly higher (p 〈 0.0001) than in the other 3 CWC species. For M. oculata and L. pertusa, also linear growth was recorded. These values (mean ± SD) were 0.014 ± 0.007 and 0.024 ± 0.018 mm d–1 for M. oculata and L. pertusa, respectively. This is the first study that compares the growth rates of 4 different CWC species under the same experimental conditions of water flow, temperature, salinity and food supply. These corals have different growth rates, both in terms of total weight increase and linear increase, and these growth rates can be related to interspecific physiological differences. Data on growth rates are essential to understand the population dynamics of CWC as well as the recovery capacity of these communities after disturbance.

Description: Direct estimations of turbulent fluxes and atmospheric stability were performed from a sonic anemometer at 50 m height on a meteorological mast at the Horns Rev wind farm in the North Sea. The stability and flux estimations from the sonic measurements are compared with bulk results from a cup anemometer at 15 m height and potential temperature differences between the water and the air above. Surface flux estimations from the advanced weather research and forecast (WRF) model are also validated against the sonic and bulk data. The correlation between the sonic and bulk estimates of friction velocity is high and the highest among all velocity comparisons. From the sonic–bulk–WRF inter-comparison, it is found that the atmospheric stability measures at the sonic height tend to be closer to the neutral value than the WRF and bulk estimates, which are performed within an air layer closer to the surface, not only from a systematic bulk and WRF under-prediction of the friction velocity when compared with the sonic value but also because of the lower magnitude of the sonic heat flux compared with that from the WRF simulations. Although they are not measured but parameterized or estimated, the bulk–WRF comparisons of friction velocity and 10 m wind speed show good agreement. It is also shown that on a long-term basis, the WRF and bulk estimates of stability are nearly equal and that a correction towards a slightly stable atmospheric condition has to be applied to the long-term wind profile at Horns Rev and at other locations over the North Sea, the correction being larger for points close to the coast.

Description: Metagenomic techniques are used to analyse bacterial communities allowing both culturable and unculturable species to be represented. However, the screening of oral metagenomic samples can be hindered by high animal host DNA content. This study evaluated methods for the reduction of human DNA concentrations within oral metagenomic samples. Plaque samples were collected from 27 patients presenting with periodontal disease and treated to remove human DNA using either selective lysis of eukaryotic cells at several buffer concentrations or differential centrifugation after treatment with trypsin and/or detergents. Human and bacterial DNA levels were determined by quantitative polymerase chain reaction (qPCR). The human DNA content of plaque extracts was significantly reduced by all treatments compared with an untreated control (P 〈 0.05). However, differential centrifugation simultaneously reduced the bacterial DNA content unless samples were pretreated with a detergent. Observations of Gram stained samples that were processed using differential centrifugation without detergent suggest that many bacteria remain adhered to human cells. An approach that uses differential centrifugation in parallel with selective lysis is recommended to fully represent the oral microbiota in metagenomic samples, including those tightly adhered to human cells and more delicate bacteria such as Mycoplasma.

Description: Although it has been more than 30 years since the discovery of deep-sea hydrothermal vents, comprehending the interconnections between hydrothermal venting and microbial life remains a challenge. Here we investigate abiotic-biotic linkages in low-temperature hydrothermal biotopes at Desperate and Lilliput on the southern Mid-Atlantic Ridge. Both sites are basalt-hosted and fluids exhibit the expected chemical signatures. However, contrasting crustal permeabilities have been proposed, supporting pervasive mixing at Desperate but restricting circulation at Lilliput. In Desperate fluids, sulfide and O2 were readily available but H2 hardly detectable. Under incubation conditions (oxic unamended, sulfide-spiked, oxic and anoxic H2 -spiked at 18°C), only sulfide oxidation by Thiomicrospira fuelled biomass synthesis. Microbial phylogenies from Desperate incubation experiments resembled those of the natural samples suggesting that the incubation conditions mimicked the environment. In Lilliput fluids, O2 was limited, whereas sulfide and H2 were enriched. Autotrophy appeared to be stimulated by residual sulfide and by amended H2 . Yet, based on bacterial phylogenies only conditions in anoxic H2 -spiked Lilliput incubations appeared similar to parts of the Lilliput habitat. In anoxic H2 -spiked Lilliput enrichments Campylobacteraceae likely supported biomass production through H2 oxidation. We argue that the diverging circulation patterns arising from different subseafloor permeabilities act as major driving forces shaping these biotope structures.

Description: This article presents a fundamental study on the role of particle breakage on the shear behavior of granular soils using the three-dimensional (3-D) discrete element method. The effects of particle breakage on the stress ratio, volumetric strain, plastic deformation, and shear failure behavior of dense crushable specimens undergoing plane strain shearing conditions are thoroughly investigated through a variety of micromechanical analyses and mechanism demonstrations. The simulation of a granular specimen is based on the effective modeling of realistic fracture behavior of single soil particles, which is demonstrated by the qualitative agreement between the results from platen compression simulations and those from physical laboratory tests. The simulation results show that the major effects of particle breakage include the reduction of volumetric dilation and peak stress ratio and more importantly the plastic deformation mechanisms and the shear failure modes vary as a function of soil crushability. Consistent macro- and micromechanical evidence demonstrates that shear banding and massive volumetric contraction depict the two end failure modes of a dense specimen, which is dominated by particle rearrangement–induced dilation and particle crushing–induced compression, respectively, with a more general case being the combination and competition of the two failure modes in the medium range of soil crushability and confining stress. However, it is further shown that a highly crushable specimen will eventually develop a shear band at a large strain because of the continuous decay of particle breakage.

Description: Zonal wind anomalies in the western equatorial Atlantic during late boreal winter to early summer precondition boreal summer cold/warm events in the eastern equatorial Atlantic (EEA) that manifest in a strong interannual Atlantic cold tongue (ACT) variability. Local intraseasonal wind fluctuations, linked to the St. Helena anticyclone, contribute to the variability of cold tongue onset and strength, particularly during years with preconditioned shallow thermoclines. The impact of cold tongue sea surface temperature (SST) anomalies on the wind field in the Gulf of Guinea is assessed. It contributes to the northward migration of humidity and convection and possibly the West African monsoon (WAM) jump. Copyright @ 2010 Royal Meteorological Society

Description: Marine macroalgae are constantly exposed to epibacterial colonizers. The epiphytic bacterial patterns and their temporal and spatial variability on host algae are poorly understood. To investigate the interaction between marine macroalgae and epiphytic bacteria, this study tested if the composition of epibacterial communities on different macroalgae was specific and persisted under varying biotic and abiotic environmental conditions over a 2-year observation time frame. Epibacterial communities on the co-occurring macroalgae Fucus vesiculosus, Gracilaria vermiculophylla and Ulva intestinalis were repeatedly sampled in summer and winter of 2007 and 2008. The epibacterial community composition was analysed by denaturing gradient gel electrophoresis (DGGE) and 16S rRNA gene libraries. Epibacterial community profiles did not only differ significantly at each sampling interval among algal species, but also showed consistent seasonal differences on each algal species at a bacterial phylum level. These compositional patterns re-occurred at the same season of two consecutive years. Within replicates of the same algal species, the composition of bacterial phyla was subject to shifts at the bacterial species level, both within the same season but at different years and between different seasons. However, 7–16% of sequences were identified as species specific to the host alga. These findings demonstrate that marine macroalgae harbour species-specific and temporally adapted epiphytic bacterial biofilms on their surfaces. Since several algal host-specific bacteria were highly similar to other bacteria known to either avoid subsequent colonization by eukaryotic larvae or to exhibit potent antibacterial activities, algal host-specific bacterial associations are expected to play an important role for marine macroalgae.

Description: A wind-driven meso-scale pattern of temperature, salinity and oxygen was found along a transect in the northern Bornholm Basin (southern Baltic Sea). Strong winds caused currents along this transect, which shifted cold intermediate water (minimum: 3.6C) towards the south. The transect was surveyed with a towed CTD-system and hydroacoustics in parallel to investigate the distribution of sprat, Sprattus sprattus balticus (Schn.) in relation to the observed meso-scale pattern. In those parts of the transect where the cold intermediate water was observed, sprat were restricted to water layers below the halocline. In other parts of the transect, sprat moved into higher water layers and occupied a wider depth range. The important factor was temperature, which set an upper limit to the vertical sprat distribution. The development of hydrography, as measured in the field, was evaluated with a hydrodynamic model.

Description: Environmental perturbation, climate change and international commerce are important drivers for biological invasions. Climate anomalies can further increase levels of habitat disturbance and act synergistically to elevate invasion risk. Herein, we use a historical data set from the upper San Francisco Estuary to provide the first empirical evidence for facilitation of invasions by climate extremes. Invasive zooplankton species did not become established in this estuary until the 1970s when increasing propagule pressure from Asia coincided with extended drought periods. Hydrological management exacerbated the effects of post-1960 droughts and reduced freshwater inflow even further, increasing drought severity and allowing unusually extreme salinity intrusions. Native zooplankton experienced unprecedented conditions of high salinity and intensified benthic grazing, and life history attributes of invasive zooplankton were advantageous enough during droughts to outcompete native species and colonise the system. Extreme climatic events can therefore act synergistically with environmental perturbation to facilitate the establishment of invasive species.

Description: Indoor mesocosms were used to study the combined effect of warming and of different densities of overwintering mesozooplankton (mainly copepods) on the spring development of phytoplankton in shallow, coastal waters. Similar to previous studies, warming accelerated the spring phytoplankton peak by ca. 1 day 1C1 whereas zooplankton did not significantly influence timing. Phytoplankton biomass during the experimental period decreased with warming and with higher densities of overwintering zooplankton. Similarly, average cell size and average effective particle size (here: colony size) decreased both with zooplankton density and warming. A decrease in phytoplankton particle size is generally considered at typical footprint of copepod grazing. We conclude that warming induced changes in the magnitude and structure of the phytoplankton spring bloom cannot be understood without considering grazing by overwintering zooplankton.

Description: The focus of this study was the 11.55 m long sediment core 303700-7, which was retrieved from the Gdansk Basin during a cruise of RV ‘Poseidon’ within the frame of the Russian–German Project GISEB. The core was analysed for grain size, elemental chemical composition, organic carbon and palynological spectra. The age control was based on palynostratigraphy and 7 radiocarbon datings of bulk sedimentary organic matter. These data provide a high-resolution record of climatic and marine palaeoenvironments in the Gdansk Basin for the last ca. 13 kyr, from the Bølling to late Holocene time. Sedimentation rates were estimated to vary between 0.37 and 1.62 mm yr–1. Major variations in palaeosalinity were estimated from bromine concentrations in the sediment. This method allows the first quantitative reconstruction of palaeosalinity changes in the Baltic Sea, especially profound during the Littorina and Postlittorina periods (middle to late Holocene). In addition, grain size data indicated several Littorina transgressive–regressive stages and a few episodes of increased near-bottom current activity. Our results from the Gdansk Basin are consistent with palaeoceanographic data from other deep basins of the Baltic Sea and provide new insights into the regional Holocene history.

Description: Recent studies suggest that cigarette smoking may trigger the development of psoriasis through oxidative, inflammatory and genetic mechanisms. Smoking initiates formation of free radicals that stimulate cell signalling pathways active in psoriasis including mitogen-activated protein kinase (MAPK), nuclear factor-κB (NF-κB) and Janus kinase/signal transducers and activators of transcription (JAK-STAT). Smoking damages the skin by increasing formation of reactive oxygen species and decreasing the gene expression of antioxidants. Nicotine also stimulates innate immune cells integral to the pathogenesis of psoriasis including dendritic cells, macrophages and keratinocytes. These cells release cytokines that activate T lymphocytes and perpetuate a cycle of chronic inflammation. Smoking also enhances expression of genes known to confer an increased risk of psoriasis, including HLA-Cw6, HLA-DQA1*0201 and CYP1A1. Improved understanding of the possible link between smoking and psoriasis pathogenesis may provide further insight into mechanisms underlying smoking, psoriasis and risk of subsequent cardiovascular disease.

Description: Parameter estimation for stochastic dynamic systems is a core problem for the environmental and ecological sciences. This study considers parameter estimation for a simple nonlinear numerical model of marine biogeochemistry. We present a nonlinear stochastic differential equation based model for estimating parameters from non-Gaussian ocean measurements collected at a coastal ocean observatory. A sequential Monte Carlo procedure, or particle filter, provides for estimation of the time evolving state and also the basis for parameter estimation. Two approaches for estimating static parameters of the system are contrasted. The first is based on likelihood calculations, and the second on augmenting the system state with the static parameters. Sensitivity analysis identified two ecological parameters (in the differential equations model) and one statistical parameter (governing the level of dynamical noise) as candidates for estimation. Computed likelihood surfaces were found to be rough due to the sample based calculations; they also indicated the ubiquitous problem of ecological parameter dependence and identifiability. A modified state augmentation procedure, incorporating a smoothed bootstrap step, was used here for parameter estimation. Realizations for the parameter values provided by this method allowed for calculation of moments and density estimates that matched well the properties of the likelihood. Incorporation of prior information on the parameters was also considered within this context. It is concluded that such a modified state augmentation procedures provides a promising avenue in parameter estimation in numerical models

Description: We assessed the effects of light limitation and temperature shift on palatability and induced antiherbivore defense in the brown alga Fucus vesiculosus L. Incubation for 2 wk at light intensities above the compensation point of photosynthesis and in the absence of grazers increased the palatability of F. vesiculosus and its subsequent consumption by the omnivorous isopod Idotea baltica Pallas. This effect correlated with an increased C:N ratio and mannitol content in the algal tissue, presumably due to increased photosynthetic carbon fixation. Mannitol, the primary product of photosynthesis in F. vesiculosus, proved to be a feeding cue for I. baltica, and depletion of the mannitol pool may therefore account for the reduced palatability during light limitation. At light intensities above the compensation point of photosynthesis, F. vesiculosus responded with decreasing palatability when it was exposed to I. baltica grazing. Irrespective of the preceding light regime, such defense induction was prevented during incubation under light limitation. Thus, under low light, defense induction is not only inhibited, but also less necessary due to the relative absence of feeding cues. Upward or downward shifts in water temperature by approximately 10°C also inhibited inducible defense in F. vesiculosus. However, such shifts did not affect algal growth and were therefore the consequence of an impairment of specific defense-related components rather than of resource limitation, unless compensatory growth was given priority over defense.

Description: We present a 3-D joint inversion framework for seismic, magnetotelluric (MT) and scalar and tensorial gravity data. Using large-scale optimization methods, parallel forward solvers and a flexible implementation in terms of model parametrization allows us to investigate different coupling approaches for the various physical parameters involved in the joint inversion. Here we compare two different coupling approaches, direct parameter coupling where we calculate conductivities and densities from seismic slownesses and cross-gradient coupling, where each model cell has an independent value for each physical property and a structural similarity is enforced through a term in the objective function. For both types of approaches we see an improvement of the inversion results over single inversions when the inverted data sets are generated from compatible models. As expected the direct coupling approach results in a stronger interaction between the data sets and in this case better results compared to the cross-gradient coupling. In contrast, when the inverted MT data is generated from a model that violates the parameter relationship in some regions but conforms with the cross-gradient assumptions, we obtain good results with the cross-gradient approach, while the direct coupling approach results in spurious features. This makes the cross-gradient approach the first choice for regions were a direct relationship between the physical parameters is unclear.

Description: The synergistic effects of fishing, climate and internal dynamics on population fluctuations are poorly understood due to the complexity of these interactions. In this paper, we combine time series analysis and simulations to investigate the long-term dynamics of an overexploited population in the Mediterranean Sea, and its link with both fishing-induced demographic changes and hydroclimatic variability. We show that the cyclicity of the catch per unit of effort (CPUE) of European hake Merluccius merluccius (EH) vanished in the 1980s, while the correlation between the CPUE and a local environmental index increased. Using simulations, we then show that the cyclicity observed in the EH biomass before the 1980s can have an internal origin, while that its disappearance could be due to the fishing-induced erosion of the age structure. Our results suggest that fishing can trigger a switch from internally generated to externally forced population fluctuations, the latter being characterised by an increasing dependency of the population on recruitment and ultimately on environmental variability. Hydroclimatic modifications occurring in the Mediterranean in the early 1980s could have enhanced these changes by leading to a mismatch between early life stages of EH and favorable environmental conditions. Our conclusions underline the key effect of the interaction between exploitation and climate on the dynamics of EH and its important consequences for management and conservation.

Description: The warming trend for the entire globe (1850 to 2005) is 0.04°C decade–1. A specific warming period started around 1980 and continues until the present. This warming also occurred in the Baltic Sea catchment, which lies between maritime temperate and continental subarctic climate zones. A detailed study of climate variability and the associated impact on the Baltic Sea area for the period 1958 to 2009 revealed that the recent changes in the warming trend are associated with changes in large-scale atmospheric circulation over the North Atlantic. The number and pathways of deep cyclones changed considerably in line with an eastward shift of the North Atlantic Oscillation centers of action. There is a seasonal shift of strong wind events from autumn to winter and early spring. Since the late 1980s, the winter season (DJFM, i.e. December to March) of the Baltic Sea area has tended to be warmer, with less ice coverage and warmer sea surface temperatures, especially pronounced in the northern parts of the Baltic Sea. There is a tendency for increased cloud cover and precipitation in regions that are exposed to westerlies and less cloud coverage at the leeward side of the Scandinavian Mountains and over the Baltic Sea Basin.

Description: he use and development of post-genomic tools naturally depends on large-scale genome sequencing projects. The usefulness of post-genomic applications is dependent on the accuracy of genome annotations, for which the correct identification of intron-exon borders in complex genomes of eukaryotic organisms is often an error-prone task. Although automated algorithms for predicting intron-exon structures are available, supporting exon evidence is necessary to achieve comprehensive genome annotation. Besides cDNA and EST support, peptides identified via MS/MS can be used as extrinsic evidence in a proteogenomic approach. We describe an improved version of the Genomic Peptide Finder (GPF), which aligns de novo predicted amino acid sequences to the genomic DNA sequence of an organism while correcting for peptide sequencing errors and accounting for the possibility of splicing. We have coupled GPF and the gene finding program AUGUSTUS in a way that provides automatic structural annotations of the Chlamydomonas reinhardtii genome, using highly unbiased GPF evidence. A comparison of the AUGUSTUS gene set incorporating GPF evidence to the standard JGI FM4 (Filtered Models 4) gene set reveals 932 GPF peptides that are not contained in the Filtered Models 4 gene set. Furthermore, the GPF evidence improved the AUGUSTUS gene models by altering 65 gene models and adding three previously unidentified genes.

Description: The region offshore Eastern Java represents one of the few places where the early stage of oceanic plateau subduction is occurring. We study the little investigated Roo Rise oceanic plateau on the Indian plate, subducting beneath Eurasia. The presence of the abnormal bathymetric features entering the trench has a strong effect on the evolution of the subduction system, and causes additional challenges on the assessment of geohazard risks. We present integrated results of a refraction/wide-angle reflection tomography, gravity modelling, and multichannel reflection seismic imaging using data acquired in 2006 south of Java near 113°E. The composite structural model reveals the previously unresolved deep geometry of the oceanic plateau and the subduction zone. The oceanic plateau crust is on average 15 km thick and covers an area of about 100 000 km2. Within our profile the Roo Rise crustal thickness ranges between 18 and 12 km. The upper oceanic crust shows high degree of fracturing, suggesting heavy faulting. The forearc crust has an average thickness of 14 km, with a sharp increase to 33 km towards Java, as revealed by gravity modelling. The complex geometry of the backstop suggests two possible models for the structural formation within this segment of the margin: either accumulation of the Roo Rise crustal fragments above the backstop or alternatively uplift of the backstop caused by basal accumulation of crustal fragments. The subducting plateau is affecting the stress field within the accretionary complex and the backstop edge, which favours the initiation of large, potentially tsunamogenic earthquakes such as the 1994 Mw= 7.8 tsunamogenic event.

Description: The Kumano fore-arc basin overlies the Nankai accretionary prism, formed by the subduction of the Philippine Sea Plate beneath the Eurasian plate offshore the Kii Peninsula, SW Honshu, Japan. Seismic surveys and boreholes within the framework of the Nankai Trough Seismogenic Zone Experiment (NanTroSEIZE) project show evidence of gas hydrates and free gas within the basin. Here we use high-quality borehole sonic data from Integrated Oceanic Drilling Program (IODP) Site C0009 to quantify the free gas distribution in the landward part of the basin. The Brie theory is used to quantify gas content from sonic logs, which are calibrated from laboratory measurements on drill cores. First, we show that the sonic data are mainly sensitive to the fluid phase filling the intergranular pores (effective porosity), rather than to the total porosity that includes water bound to clay minerals. We then compare the effective porosity to lithodensity-derived porosity that acts as a proxy for total porosity. The combination of these two data sets also allows assessment of clay mineralogy of the sediments. Second, we compute free gas saturation and find a gas-rich interval that is restricted to a lithological unit characterized by a high abundance of wood fragments and lignite. This unit, at the base of the fore-arc basin, is a hydrocarbon source that should be taken into account in models explaining gas distribution and the formation of the bottom-simulating reflector within the Kumano fore-arc basin.

Description: We assessed the seasonal change in trophic interactions at the mesograzer and small predator level in a temperate eelgrass system. This was done through stable isotope (δ13C and δ15N) and fatty acid analyses of eelgrass Zostera marina, attached epiphytes, sand microflora, the red alga Delesseria sanguinea, and the 4 most common mesograzer and predator species. Sampling took place monthly in the western part of the Baltic Sea during a whole year (April 2002 to February 2003). The trophic importance of microalgae was corroborated in all studied species. Red algae were consumed to a lesser extent and eelgrass was of minor importance. The degree of dependence on the main carbon sources was species-specific and varied with time. The small gastropod, Rissoa membranacea, mostly grazed epiphytes (73% on average), whereas the fractions of epiphytes and sand microflora showed a more balanced pattern in the other mesograzer species. Stable carbon data and fatty acid composition strongly suggested that epiphytic algae were the primary source of organic matter for mesograzers in late spring and autumn. In summer, sand microflora were of greater importance as carbon sources, except for the amphipod Gammarus oceanicus for which red algae was the most important. Stable nitrogen values indicated that the degree of carnivory was size-dependent in both omnivorous crustacean species studied; larger individuals generally occupied a higher trophic position than did smaller ones. Furthermore, the isopod Idotea baltica was more herbivorous in summer than in the other seasons. Our results confirm the importance of species-specific and temporal variability for the effect of mesograzers in eelgrass systems. The significance of mesograzers as determinants of food-web structure via the reduction of epiphytes is further corroborated by our study, and the observed high plasticity of mesograzers concerning food sources may promote the stability of eelgrass food webs despite strong seasonal variations in the biomass of primary producers.

Description: Culturing experiments were performed with the benthic foraminifer Ammonia aomoriensis from Flensburg Fjord, western Baltic Sea. The experiments simulated a projected rise in atmospheric CO2 concentrations. We exposed specimens to 5 seawater pCO2 levels ranging from 618 µatm (pH 7.9) to 3130 µatm (pH 7.2) for 6 wk. Growth rates and mortality differed significantly among pCO2 treatments. The highest increase of mean test diameter (19%) was observed at 618 µatm. At partial pressures 〉1829 µatm, the mean test diameter was observed to decrease, by up to 22% at 3130 µatm. At pCO2 levels of 618 and 751 µatm, A. aomoriensis tests were found intact after the experiment. The outer chambers of specimens incubated at 929 and 1829 µatm were severely damaged by corrosion. Visual inspection of specimens incubated at 3130 µatm revealed wall dissolution of all outer chambers, only their inner organic lining stayed intact. Our results demonstrate that pCO2 values of ≥929 µatm in Baltic Sea waters cause reduced growth of A. aomoriensis and lead to shell dissolution. The bottom waters in Flensburg Fjord and adjacent areas regularly experience pCO2 levels in this range during summer and fall. Increasing atmospheric CO2 concentrations are likely to extend and intensify these periods of undersaturation. This may eventually slow down calcification in A. aomoriensis to the extent that net carbonate precipitation terminates. The possible disappearance of this species from the Baltic Sea and other areas prone to seasonal undersaturation would likely cause significant shifts in shallow-water benthic ecosystems in the near future.

Description: The coccolithophore Calcidiscus leptoporus (strain RCC1135) was grown in dilute batch culture at CO2 levels ranging from similar to 200 to similar to 1600 mu atm. Increasing CO2 concentration led to an increased percentage of malformed coccoliths and eventually (at similar to 1500 mu atm CO2) to aggregation of cells. Carbonate chemistry of natural seawater was manipulated in three ways: first, addition of acid; second, addition of a IICO3-/CO32- solution; and third, addition of both acid and IICO3-/CO32- solution. The data set allowed the disentangling of putative effects of the different parameters of the carbonate system. It is concluded that CO2 is the parameter of the carbonate system which causes both aberrant coccolithogenesis and aggregation of cells.

Description: Climate models predict increases in frequency of summer heat waves. In Europe, such events have already caused declines in seagrass meadows, highlighting the importance of short-term responses of local communities to climate stress. Understanding the variability among populations along the European thermal gradient in response to heat waves is crucial for seagrass conservation and management. Using a mesocosm we compared effects of a simulated heat wave on the photophysiology of Zostera marina populations coming from low (43° N, Adriatic Sea) and high latitudes (56° N, North and Baltic Seas). Measurements before, during and up to 4 wk after the heat wave included photophysiological parameters derived from light response curves generated by PAM fluorometry and gene expression using qRT-PCR. In all 3 populations, initial exposures to thermal stress were characterized by increases in dark adapted effective quantum yield (Y0), maximum electron transfer rate of PSII (ETRmax) and slope of the light response curve (α), coinciding with upregulations of the gene superoxidase dismutase [Mn]. With continuation of the heat wave these initial effects disappeared, demonstrated by declines in Y0, ETRmax and α relative to controls. Z. marina from the Adriatic suffered from the simulated heat wave as much as its high-latitude counterparts. However, we also demonstrate slight photophysiological differences between the populations during the recovery phase, where performance of high-latitude populations continued declining even after water temperatures returned to control levels, while photochemical activity fully recovered in the Adriatic population. These results might draw the attention of future studies and seagrass conservation efforts.

Description: At 2 modern deep-water cold-seep sites, the North Alex Mud Volcano (eastern Mediterranean Sea, water depth ~500 m) and the Concepción Methane Seep Area (south-east Pacific Ocean, water depth ~700 m), we found abundant catshark (Chondrichthyes: Scylio - rhinidae) and skate (Chondrichthyes: Rajidae) egg capsules, respectively, associated with carbonates and tubeworms. Fossilized catshark egg capsules were found at the 35 million year old Bear River Cold-Seep Deposit (Washington State, USA) closely associated with remains of tubeworms and sponges. We suggest that cold-seep ecosystems have served as nurseries for predatory elasmobranch fishes since at least late Eocene time and therewith possibly play an important role for the functioning of deep-water ecosystems.

Description: In 1956, the shallow-water grouper Cephalopholis argus was introduced from Moorea (French Polynesia), where grouper diversity (14 species) is high, to the Main Hawaiian Islands (MHI), where only 2 rare native deep-water groupers occur. In this non-native environment, the species has flourished and has become the dominant apex predator on many reefs. In the present study, a comparison of non-native populations of C. argus in the MHI with native populations in Moorea showed that mean total length (32.0 vs. 26.9 cm), mass (722 vs. 326 g), growth, and body condition were each significantly elevated in the MHI. In addition, while an ontogenetic shift towards larger prey occurred in both locations, it was faster and more consistent in Moorea than in the MHI. As a result, while small C. argus of comparable size in the 2 locations consumed similar-sized prey, large C. argus in Moorea consumed significantly longer and deeper-bodied prey than their counterparts in the MHI. This pattern was unrelated to the size distributions of available prey and may thus reflect stronger intra- and interspecific competition for small prey in Moorea. Although ecological release in a broader sense (i.e. a combination of predator release, parasite release, and competitive release) may play a role, the most direct explanation for the observed differences between C. argus in native habitats in Moorea (with many competing grouper species) and non-native habitats in the MHI (few competitors) would be competitive release (here used in the sense of benefits resulting from the reduction of interspecific competition).

Description: Dependent on the ‘intrinsic’ effects on the crystal lattice of the rock constituents and the diminishing ‘extrinsic’ effects of pores and microcracks, elastic wave velocity versus pressure trends in cracked rocks are characterized by non-linear velocity increase at low pressure. At high pressure the ‘extrinsic’ influence vanishes and the velocity increase becomes approximately linear. Usually, the transition between non-linear and linear behaviour, the ‘crack closure pressure’, is not accessible in an experiment, because actual equipment is limited to lower pressure. For this reason, several model functions for describing velocity—pressure trends were proposed in the literature to extrapolate low-pressure P-wave velocity measurements to high pressures and, in part, to evaluate the ‘intrinsic’ velocity—pressure trend from low-pressure data. Knowing the ‘intrinsic’ velocity trend is of particular importance for the quantification of the crack influence at low pressure, at high pressure, the ‘intrinsic’ trend describes the velocity trend as a whole sufficiently well. Checking frequently used model functions for suitability led to the conclusion that all relations are unsuitable for the extrapolation and, if applicable, the estimation of the ‘intrinsic’ velocity trend. However, it can be shown that the ‘intrinsic’ parameters determined by means of a suitable model function, the zero pressure velocity and the pressure gradient depend on maximum experimental pressure in a non-linear way. Our approach intends to obtain better estimates of particular parameters from observed non-linear behaviour. A converging exponential function is used to approximate particular trends, assuming that the point of convergence of the function represents a better estimate of the zero pressure velocity and the pressure gradient, respectively. Whether the refined ‘intrinsic’ velocity trend meets the ‘true intrinsic’ velocity trend within acceptable errors cannot be proven directly due to missing experimental data at very high pressure. We, therefore, conclude that our approach cannot ensure absolutely certain ‘intrinsic’ velocity trends, however, it can be shown that the optimized trends approximate the ‘true intrinsic’ velocity trend better as all the other relations do.

Description: We analysed carbon (δ13C) and nitrogen (δ15N) isotope ratios of organisms and biogenic tissues from Comau Fjord (southern Chile) to characterise benthic food webs and spatial isotope variability in this ecosystem. These values were intended to serve as a baseline for detecting anthropogenic impacts on Patagonian marine fjord ecosystems in later studies. Benthic macro algae and invertebrate suspension feeders were primarily considered, with some supplementary data from cyanobacteria, plankton, fish, and coastal vertebrates. Six depth transects typified the lateral salinity gradients from the innermost part of the fjord to its mouth, as well as the vertical density gradients caused by freshwater inflow. Carbon isotope signatures indicated predominant consumption of either CO2 or HCO3– for benthic macroalgal. All CO2 users belonged to rhodophytes. The δ15N values of benthic macrophytes decreased with decreasing salinity, both vertically and along the fjord axis. This implies the influence of 15N-poor terrestrial dissolved inorganic nitrogen (DIN) at these sites. Enhanced influence of freshwater influx also lowered N contents and increased C/N ratios in algal tissues. Exceptionally high macroalgae δ15N values at the seabird and sealion colony Isla Liliguapi point to animal faeces as an additional source of 15N-enriched DIN. Thus, DIN sources not originating from the open sea are additionally utilised by the benthic macroalgae in the fjord. In contrast, mussel tissue from the same locations was much less influenced by varying DIN sources. Among benthic suspension feeders, mytilids (Mytilus chilensis, Aulacomya ater) had the lowest and scleractinian corals (Desmophyllum dianthus) had the highest δ15N values, and Balanidae (Elminius kingii) and gorgonians (Primnoella sp.) showed values in between. The preference for specific size classes of marine particulate organic matter (seston) as food serves as an explanation for the δ15N variability observed between the different benthic suspension feeders.

Description: The ultramafic-hosted Logatchev hydrothermal field (LHF) is characterized by vent fluids, which are enriched in dissolved hydrogen and methane compared with fluids from basalt-hosted systems. Thick sediment layers in LHF are partly covered by characteristic white mats. In this study, these sediments were investigated in order to determine biogeochemical processes and key organisms relevant for primary production. Temperature profiling at two mat-covered sites showed a conductive heating of the sediments. Elemental sulfur was detected in the overlying mat and metal-sulfides in the upper sediment layer. Micro-profiles revealed an intensive hydrogen sulfide flux from deeper sediment layers. Fluorescence in situ hybridization showed that filamentous and vibrioid, Arcobacter-related Epsilonproteobacteria dominated the overlying mats. This is in contrast to sulfidic sediments in basalt-hosted fields where mats of similar appearance are composed of large sulfur-oxidizing Gammaproteobacteria. Epsilonproteobacteria (7-21%) and Deltaproteobacteria (20-21%) were highly abundant in the surface sediment layer. The physiology of the closest cultivated relatives, revealed by comparative 16S rRNA sequence analysis, was characterized by the capability to metabolize sulfur components. High sulfate reduction rates as well as sulfide depleted in (34)S further confirmed the importance of the biogeochemical sulfur cycle. In contrast, methane was found to be of minor relevance for microbial life in mat-covered surface sediments. Our data indicate that in conductively heated surface sediments microbial sulfur cycling is the driving force for bacterial biomass production although ultramafichosted systems are characterized by fluids with high levels of dissolved methane and hydrogen

Description: The cod Gadus morhua stock in the eastern Baltic Sea has seen a recent miraculous recovery, mainly due to a drastic decrease in fishing mortality (F). Here we explore 3 options for rebuilding the stock to the size (biomass that can produce the maximum sustainable yield, or Bmsy) that is required by international law and that can support high long-term yields. The first option implements a fishing mortality of F = 0.3, as is aimed for under the current European Commission management plan. The second option implements in addition the current constraint of a maximum annual increase of 15% in total allowable catches until a catch corresponding to F = 0.3 is reached. The third option freezes the 2010 catch for 2 yr before allowing a linear increase with spawning stock biomass towards 90% of the maximum sustainable yield. We show that the first option provides the highest catches for the first 3 yr, but fails to rebuild the biomass to the level of Bmsy. The second option rebuilds the biomass above Bmsy only temporarily and results in the lowest catches over a 10 yr period. The third option rebuilds the biomass above Bmsy and provides high catches and the highest profit within 10 yr. Within a decade, all 3 options provide several-fold higher biomasses, catches, and profits compared to the current situation, underlining the benefits that can be obtained from proper fisheries management. In comparison, the so-called precautionary management approach (F = 0.6) implemented until 2006 would perform worse in every respect.

Description: A typical marine controlled-source electromagnetic system consists of an electric dipole transmitter and one or more electric dipole receivers. The objective of a survey is to determine the seafloor resistivity by recording the electromagnetic transients, which diffuse through the earth from the transmitter to the receivers. Accurate knowledge of system geometry is crucial for proper interpretation; errors in the position and orientation of the transmitter and/or the receivers propagate into errors in the predicted seafloor resistivity. We show theoretically that for certain multireceiver set-ups and crustal electrical profiles that the geometry and the seafloor resistivity may be determined independently. A specific example is an experiment proposed in association with NEPTUNE Canada. Here, we have already deployed an electric dipole transmitter with a known orientation in a known location. A cabled streamer of receivers may be towed by a survey vessel in the vicinity of the transmitter on a known heading. For this configuration, an eigenparameter analysis of two seafloor models consisting of (1) a halfspace and (2) a resistive layer buried within a halfspace shows that the resistivity structure of the seafloor can be independently resolved from the cable location. Further studies of these two models also indicate that the position of the streamer must be roughly known in advance on the order of a hundred metres to be used as a suitable starting model in a non-linear inversion. The crucial information is contained in the parts of the pulse which travel through the seawater and which act as a calibration path. Such information is absent for a static DC method.

Description: To understand the influence of changing surface ocean pH and carbonate chemistry on the coccolithophore Emiliania huxleyi, it is necessary to characterize mechanisms involved in pH homeostasis and ion transport. Here, we measured effects of changes in seawater carbonate chemistry on the fluorescence emission ratio of BCECF (2',7'-bis-(2-carboxyethyl)-5-(and-6)-carboxyfluorescein) as a measure of intracellular pH (pH(i)). Out of equilibrium solutions were used to differentiate between membrane permeation pathways for H+, CO(2) and HCO(3)-. Changes in fluorescence ratio were calibrated in single cells, resulting in a ratio change of 0.78 per pH(i) unit. pH(i) acutely followed the pH of seawater (pH(e)) in a linear fashion between pH(e) values of 6.5 and 9 with a slope of 0.44 per pH(e) unit. pH(i) was nearly insensitive to changes in seawater CO(2) at constant pH(e) and HCO(3)-. An increase in extracellular HCO(3)- resulted in a slight intracellular acidification. In the presence of DIDS (4,4'-diisothiocyanatostilbene-2,2'-disulfonic acid), a broad-spectrum inhibitor of anion exchangers, E. huxleyi acidified irreversibly. DIDS slightly reduced the effect of pH(e) on pH(i). The data for the first time show the occurrence of a proton permeation pathway in E. huxleyi plasma membrane. pH(i) homeostasis involves a DIDS-sensitive mechanism.

Description: The continental margin of Nicaragua and Costa Rica is characterized by significant lateral changes from north to south such as a decreasing dip of the slab, a decreasing magma production and a shift in the volcanic front. To investigate this transition, a joint on- and offshore local earthquake tomography was performed. Low P-wave velocities and high Vp/Vs ratios, indicative for hydration, were found in the upper-mantle and lowermost crust beneath the Sandino Basin. The mantle wedge hydration can be estimated to 2.5 wt. per cent beneath south Nicaragua. In contrast, the mantle wedge beneath north Costa Rica is weakly or not hydrated. The hydration leads to a local gap in the seismicity in Nicaragua. The lateral transition between the hydrated and non-hydrated areas occurs within a distance of about 10 km. This transition coincides with a change in the crustal thickness in the order of 5–10 km, thickening to the south, and in the tectonic regimes. The change in the tectonic regimes towards a stronger extension along the margin of Nicaragua could be the key for understanding the observations: the extension may support the opening of pathways for a wide zone of fluid migration and hydration through the overriding plate which are identified with areas of low Vp, high Vp/Vs and low seismicity.

Description: The analysis of Cobalt (Co) at low pM concentrations in seawater with Adsorptive Cathodic Stripping Voltammetry involves high concentrations of sodium nitrite (NaNO2) to enhance the signal in an electrocatalytic reaction. In this study we found three substitutes for NaNO2 that critically affected the sensitivity. Optimisation of a method with potassium bromate (KBrO3) resulted in an excellent detection limit (0.9 pM) after a 90 s adsorption period. Reactant concentration and consumption were 10× reduced compared to protocols with NaNO2 and reagent blanks were lower. Accuracy and precision were verified with SAFe intercalibration standards and the method was applied using open ocean seawater samples. The reaction mechanism is discussed and differences to NaNO2 are shown.

Description: Latitudinal variation in thermal reaction norms of key fitness traits may inform about the response of populations to climate warming, yet their adaptive nature and evolutionary potential are poorly known. We assessed the contribution of quantitative genetic, neutral genetic and environmental effects to thermal reaction norms of growth rate for populations of the damselfly Ischnura elegans. Among populations, reaction norms differed primarily in elevation, suggesting that time constraints associated with shorter growth seasons in univoltine, high-latitude as well as multivoltine, low-latitude populations selected for faster growth rates. Phenotypic divergence among populations is consistent with selection rather than drift as QST was greater than FST in all cases. QST estimates increased with experimental temperature and were influenced by genotype by environment interactions. Substantial additive genetic variation for growth rate in all populations suggests that evolution of trait means in different environments is not constrained. Heritability of growth rates was higher at high temperature, driven by increased genetic rather than environmental variance. While environment-specific nonadditive effects also may contribute to heritability differences among temperatures, maternal effects did not play a significant role (where these could be accounted for). Genotype by environment interactions strongly influenced the adaptive potential of populations, and our results suggest the potential for microevolution of thermal reaction norms in each of the studied populations. In summary, the observed latitudinal pattern in growth rates is adaptive and results from a combination of latitudinal and voltinism compensation. Combined with the evolutionary potential of thermal reaction norms, this may affect populations’ ability to respond to future climate warming.

Description: Biomineralization in the marine phytoplankton Emiliania huxleyi is a stringently controlled intracellular process. The molecular basis of coccolith production is still relatively unknown although its importance in global biogeochemical cycles and varying sensitivity to increased pCO2 levels has been well documented. This study looks into the role of several candidate Ca2+, H+ and inorganic carbon transport genes in E. huxleyi, using quantitative reverse transcriptase PCR. Differential gene expression analysis was investigated in two isogenic pairs of calcifying and non-calcifying strains of E. huxleyi and cultures grown at various Ca2+ concentrations to alter calcite production. We show that calcification correlated to the consistent upregulation of a putative HCO3- transporter belonging to the solute carrier 4 (SLC4) family, a Ca2+/H+ exchanger belonging to the CAX family of exchangers and a vacuolar H+-ATPase. We also show that the coccolith-associated protein, GPA is downregulated in calcifying cells. The data provide strong evidence that these genes play key roles in E. huxleyi biomineralization. Based on the gene expression data and the current literature a working model for biomineralization-related ion transport in coccolithophores is presented.

Description: Rising atmospheric CO2 concentrations could cause a calcium carbonate subsaturation of Arctic surface waters in the next 20 yr, making these waters corrosive for calcareous organisms. It is presently unknown what effects this will have on Arctic calcifying organisms and the ecosystems of which they are integral components. So far, acidification effects on crustose coralline red algae (CCA) have only been studied in tropical and Mediterranean species. In this work, we investigated calcification rates of the CCA Lithothamnion glaciale collected in northwest Svalbard in laboratory experiments under future atmospheric CO2 concentrations. The algae were exposed to simulated Arctic summer and winter light conditions in 2 separate experiments at optimum growth temperatures. We found a significant negative effect of increased CO2 levels on the net calcification rates of L. glaciale in both experiments. Annual mean net dissolution of L. glaciale was estimated to start at an aragonite saturation state between 1.1 and 0.9 which is projected to occur in parts of the Arctic surface ocean between 2030 and 2050 if emissions follow ‘business as usual’ scenarios (SRES A2; IPCC 2007). The massive skeleton of CCA, which consist of more than 80% calcium carbonate, is considered crucial to withstanding natural stresses such as water movement, overgrowth or grazing. The observed strong negative response of this Arctic CCA to increased CO2 levels suggests severe threats of the projected ocean acidification for an important habitat provider in the Arctic coastal ocean.

Description: Detrital fission-track studies on sedimentary basins surrounding eroding mountain belts provide a powerful tool to reconstruct exhumation histories of the source area. However, examples from active arc-trench systems are sparse. In this study, we report detrital apatite fission-track (AFT) data from Holocene and Pleistocene turbiditic trench and modern river sediments at the Chilean margin (36°S-47°S). Sediment petrography and detrital AFT data point to different major sediment sources, underlining the need for multidisciplinary studies: whereas sediment petrography indicates the erosion of large volumes of volcanic detritus, no such volcanic signal is seen in the detrital age pattern. Areally subordinate plutonic units are identified as the main, often unique sources. This result has important implications for studies of fossil systems, where the feeder areas are eroded, and where the youngest age population is often interpreted to indicate active volcanism. For the southernmost part of the study area in the Patagonian Andes, where the source area is mainly composed of granitoids, the sediment is derived from only small portions along the main divide, pointing to focused glacial erosion there. Our detrital AFT data show no exhumational signal that could be related to the subduction of the actively spreading Chile Ridge at c. 47°S and to the opening of a slab window beneath the South American Plate.

Description: An activity guided isolation of the H2O subextract of the crude extract of Melampyrum arvense L. afforded iridoid glucosides: aucubin (1), melampyroside (2), mussaenoside (3), mussaenosidic acid (4), 8-epi-loganin (5); flavonoids: apigenin (6), luteolin (7), luteolin 7-O-β-glucopyranoside (8); a lignan glycoside dehydrodiconiferyl alcohol 9-O-β-glucopyranoside (9); and benzoic acid (10). β-Sitosterol (11) and a fatty acid mixture (12) were identified as the active principles of the CHCl3 subextract. The structures of the isolates were elucidated by spectroscopic methods, while the composition of 12 was identified by GC-MS after methylation. Luteolin (7) appeared as the most active compound against Trypanosoma brucei rhodesiense and Leishmania donovani (IC50 values 3.8 and 3.0 μg/mL). Luteolin 7-O-β-glucopyranoside (8) displayed the best antiplasmodial activity against Plasmodium falciparum (IC50 value 2.9 μg/mL). This is the first detailed phytochemical study on Turkish M. arvense and the first report of the antiprotozoal effect of Melampyrum species and its constituents

Description: As part of our continuing research on seaweeds, crude MeOH extracts of two green, three brown and six red algae collected from Marmara, Black, Aegean and Mediterranean Seas were screened. Four parasitic protozoa, i.e. Plasmodium falciparum, Trypanosoma brucei rhodesiense, T. cruzi, Leishmania donovani and the tubercle bacillus Mycobacterium tuberculosis were used as test organisms for the in vitro assays. The selective toxicity of the extracts was also determined against mammalian L6 cells. All seaweed extracts were active against T. brucei rhodesiense; the Dasya pedicellata extract was the most potent (IC50 value 0.37 µg/mL). The same extract also weakly inhibited the growth of T. cruzi (IC50 62.02 µg/mL). All seaweed extracts also showed leishmanicidal activity (IC50 values 16.76–69.98 µg/mL). The majority of the extracts also exhibited antiplasmodial potential and the most potent extracts were those from D. pedicellata (IC50 0.38 µg/mL), Codium bursa (IC50 1.38 µg/mL) and Caulerpa rasemosa (IC50 3.12 µg/mL). One brown and two red algal extracts showed some weak activity against Mycobacterium tuberculosis (MIC values 125–256 µg/mL). Except for the extract of Dasya pedicellata, none of the extracts displayed any cytotoxicity. This is the second study investigating the antiprotozoal activities of Turkish marine algae and identifies Dasya pedicellata, an understudied algal species, as a candidate for further studies.

Description: As part of the PeECE II mesocosm project, we investigated the effects of pCO2 levels on the initial step of heterotrophic carbon cycling in the surface ocean. The activities of microbial extracellular enzymes hydrolyzing 4 polysaccharides were measured during the development of a natural phytoplankton bloom under pCO2 conditions representing glacial (190 µatm) and future (750 µatm) atmospheric pCO2. We observed that (1) chondroitin hydrolysis was variable throughout the pre-, early- and late-bloom phases, (2) fucoidanase activity was measurable only in the glacial mesocosm as the bloom developed, (3) laminarinase activity was low and constant, and (4) xylanase activity declined as the bloom progressed. Concurrent measurements of microbial community composition, using denaturing-gradient gel electrophoresis (DGGE), showed that the 2 mesocosms diverged temporally, and from one another, especially in the late-bloom phase. Enzyme activities correlated with bloom phase and pCO2, suggesting functional as well as compositional changes in microbial communities in the different pCO2 environments. These changes, however, may be a response to temporal changes in the development of phytoplankton communities that differed with the pCO2 environment. We hypothesize that the phytoplankton communities produced dissolved organic carbon (DOC) differing in composition, a hypothesis supported by changing amino acid composition of the DOC, and that enzyme activities responded to changes in substrates. Enzyme activities observed under different pCO2 conditions likely reflect both genetic and population-level responses to changes occurring among multiple components of the microbial loop.

Description: Aim  Many aquatic invertebrates produce dormant life-history stages as a means to endure inhospitable environments and to facilitate natural long-distance dispersal, yet we have little understanding of the role of dormant stages as a mechanism for human-mediated introductions of non-indigenous species. We explore the survival of invertebrate dormant eggs in collected ships’ ballast sediment over a 1-year period to determine relative invasion potential across taxa (i.e. rotifers, copepods, cladocerans and bryozoans) and different habitats (freshwater, marine). Location  Canadian Atlantic and Pacific coasts and Laurentian Great Lakes. Methods  During 2007 and 2008, 19 ballast samples were collected as a part of a larger study. The degradation rate of dormant eggs was assessed by enumerating dormant eggs and by conducting viability hatching experiments. Results  Taxa examined included rotifers, copepods, anomopods, onychopods and bryozoans. Dormant eggs of rotifers degraded at the highest rate of all taxa examined, with no viable eggs remaining within 10 months. Copepods showed a less rapid degradation rate than rotifers. The degradation rate of anomopod dormant eggs was significantly slower than that of both rotifers and copepods. Onychopods and bryozoans did not visibly degrade at all over 12 months. Viability hatching experiments were successful for rotifers, copepods, and anomopods. Onychopods and bryozoans did not hatch during any of the three hatching trials. Main conclusions  Dormancy is not equally beneficial to all invertebrate taxa. Our results indicate that dormant eggs of rotifers and copepods degrade at a rapid rate and may not pose high invasion risk. In contrast, the slow degradation rate of anomopod dormant eggs and the lack of degradation of onychopod and bryozoan dormant eggs could result in high invasion risk because of their accumulation in ballast tanks. Species having resistant dormant eggs mostly belong to freshwater taxa making freshwater habitats at higher invasion risk by dormant invertebrates than marine habitats.

Description: As sessile filter feeders, sponges rely on a highly efficient fluid transport system. Their physiology depends on efficient water exchange, which is performed by the aquiferous system. This prominent poriferan anatomical character represents a dense network of incurrent and excurrent canals on which we lack detailed 3D models. To overcome this, we investigated the complex leucon‐type architecture in the demosponge Tethya wilhelma using corrosion casting, microtomography, and 3D reconstructions. Our integrative qualitative and quantitative approach allowed us to create, for the first time, high‐resolution 3D representations of entire canal systems which were used for detailed geometric and morphometric measurements. Canal diameters lack distinct size classes, and bifurcations are non‐uniformly ramified. A relatively high number of bifurcations show previously unknown and atypical cross‐sectional area ratios. Scaling properties and topological patterns of the canals indicate a more complex overall architecture than previously assumed. As a consequence, it might be more convenient to group canals into functional units rather than hierarchical clusters. Our data qualify the leucon canal system architecture of T. wilhelma as a highly efficient fluid transport system adapted toward minimal flow resistance. Our results and approach are relevant for a better understanding of sponge biology and cultivation techniques.

Description: There are precious few statisticians involved in science policy, either nationally or internationally. In this paper I will, in an unusually personal way for a scientific journal, describe some of the possibilities for policy work and the potential impact such work can have. An example is the Intergovernmental Panel on Climate Change. I will also discuss ways that organizations, individuals, and the statistical community as a whole can get involved in policy aspects of research. And policy research is unavoidably political!

Description: Cephalopods are extraordinary molluscs equipped with vertebrate-like intelligence and a unique buoyancy system for locomotion. A growing body of evidence from the fossil record, embryology and Bayesian molecular divergence estimations provides a comprehensive picture of their origins and evolution. Cephalopods evolved during the Cambrian (∼530 Ma) from a monoplacophoran-like mollusc in which the conical, external shell was modified into a chambered buoyancy apparatus. During the mid-Palaeozoic (∼416 Ma) cephalopods diverged into nautiloids and the presently dominant coleoids. Coleoids (i.e. squids, cuttlefish and octopods) internalised their shells and, in the late Palaeozoic (∼276 Ma), diverged into Vampyropoda and the Decabrachia. This shell internalisation appears to be a unique evolutionary event. In contrast, the loss of a mineralised shell has occurred several times in distinct coleoid lineages. The general tendency of shell reduction reflects a trend towards active modes of life and much more complex behaviour.

Description: The increasing market demand for cephalopods and the experiences obtained with different species has boosted the interest in developing their culture in Latin America. In 2008, an international workshop was held in Puerto Montt, Chile, with 14 experts in experimental cephalopods aquaculture from Brazil, Chile, Spain, and Mexico. Several topics were approached within the holobenthic species Octopus maya and the merobenthic species Enteroctopus megalocyathus, Octopus vulgaris, and Robsonella fontaniana. Part of the conclusions demonstrated that the two greatest difficulties for their production were survival of paralarvae for merobenthic species, and survival of early juveniles for holobenthic species. Besides, there is a need to study the endogenous and exogenous factors affecting health and nutritional status of embryos, paralarvae, and juveniles. These stages, which may limit the culture, should be extensively studied in order to develop the appropriate environmental conditions and culture systems for the physiological and behavioral requirements, from egg incubation up to juveniles to reach a grow-out phase.

Description: In this paper we discuss the use of Raman spectroscopy for characterising polymers both in the laboratory and also in‐situ at the production line. We show how polymer crystallinity can be followed during extrusion and drawing, and describe the compositional analysis of cross‐linked acrylic terpolymers in a polymerisation reactor. We also discuss problems which can arise such as sample fluorescence from moving polymers, distortion of relative band intensities due to chromatic aberration, and sampling difficulties with turbid solutions.

Description: Stable isotope analysis has emerged as one of the primary means for examining the structure and dynamics of food webs, and numerous analytical approaches are now commonly used in the field. Techniques range from simple, qualitative inferences based on the isotopic niche, to Bayesian mixing models that can be used to characterize food‐web structure at multiple hierarchical levels. We provide a comprehensive review of these techniques, and thus a single reference source to help identify the most useful approaches to apply to a given data set. We structure the review around four general questions: (1) what is the trophic position of an organism in a food web?; (2) which resource pools support consumers?; (3) what additional information does relative position of consumers in isotopic space reveal about food‐web structure?; and (4) what is the degree of trophic variability at the intrapopulation level? For each general question, we detail different approaches that have been applied, discussing the strengths and weaknesses of each. We conclude with a set of suggestions that transcend individual analytical approaches, and provide guidance for future applications in the field.

Description: Tomography is like a photograph that was taken by a camera with blurred and defective lenses that deform the shapes and colours of objects. Reporting quantitative parameters derived from tomographic inversion is not always adequate because tomographic results are often strongly biased. To quantify the results of tomographic inversion, we propose a forward modelling and tomographic inversion (FM&TI) approach that aims to find a more realistic solution than conventional tomographic inversion. The FM&TI scheme is based on the assumption that if two tomograms derived from the inversion of observed and synthetic data are identical, the synthetic structure may appear to be closer to the real unknown structure in the ground than the inversion result. However, the manual design of the synthetic velocity distribution is usually time-consuming and ambiguous. In this study, we propose an approach that automatically searches for a probabilistic model. In this approach, a synthetic model is iteratively updated while taking into account the bias of the model in previous stages of the FM&TI performance. Here, we present an example of synthetic modelling and real data processing for an active source refraction data set corresponding to a marine profile across the subduction zone in Chile at about 32°S latitude. A key feature of the model is a low-velocity channel above the subducted oceanic crust, which was defined in the synthetic model and expected in the real case. The conventional first arrival traveltime tomography was barely able to resolve this channel. However, after several iterations of the FM&TI modelling, we succeeded in reconstructing this channel clearly. In the paper, we briefly discuss the nature of this low-velocity subduction channel, and we compare the results with other studies.

Description: In diverse animal species, from insects to mammals, females display a more efficient immune defence than males. Bateman’s principle posits that males maximize their fitness by increasing mating frequency whereas females gain fitness benefits by maximizing their lifespan. As a longer lifespan requires a more efficient immune system, these implications of Bateman’s principle may explain widespread immune dimorphism among animals. Because in most extant animals, the provisioning of eggs and a higher parental investment are attributes of the female sex, sex-role reversed species provide a unique opportunity to assess whether or not immune dimorphism depends on life history and not on sex per se. In the broad-nosed pipefish Syngnathus typhle, males brood and nourish the eggs in a ventral pouch and thus invest more into reproduction than females. We found males to have a more active immune response both in field data from four populations and also in an experiment under controlled laboratory conditions. This applied to different measures of immunocompetence using innate as well as adaptive immune system traits. We further determined the specificity of immune response initiation after a fully factorial primary and secondary exposure to a common marine pathogen Vibrio spp. Males not only had a more active but also a more specific immune defence than females. Our results thus indeed suggest that the sex that invests more into the offspring has the stronger immune defence.

Description: Host–parasite coevolution can lead to a variety of outcomes, but whereas experimental studies on clonal populations have taken prominence over the last years, experimental studies on obligately out-crossing organisms are virtually absent so far. Therefore, we set up a coevolution experiment using four genetically distinct lines of Tribolium castaneum and its natural obligately killing microsporidian parasite, Nosema whitei. After 13 generations of experimental coevolution, we employed a time-shift experiment infecting hosts from the current generation with parasites from nine different time points in coevolutionary history. Although initially parasite-induced mortality showed synchronized fluctuations across lines, a general decrease over time was observed, potentially reflecting evolution towards optimal levels of virulence or a failure to adapt to coevolving sexual hosts.

Description: The protist Labyrinthula zosterae (Phylum Bigyra, sensu Tsui et al. 2009) has been identified as a causative agent of wasting disease in eelgrass (Zostera marina), of which the most intense outbreak led to the destruction of 90% of eelgrass beds in eastern North America and western Europe in the 1930s. Outbreaks still occur today, albeit at a smaller scale. Traditionally, L. zosterae has been quantified by measuring the necrotic area of Z. marina leaf tissue. This indirect method can however only lead to a very rough estimate of pathogen load. Here, we present a quantitative real-time polymerase chain reaction (qPCR) approach to directly detect and quantify L. zosterae in eelgrass tissue. Based on the internal transcribed spacer (ITS) sequences of rRNA genes, species-specific primers were designed. Using our qPCR, we were able to quantify accurately and specifically L. zosterae load both from culture and eelgrass leaves using material from Europe and North America. Our detection limit was less than one L. zosterae cell. Our results demonstrate the potential of this qPCR assay to provide rapid, accurate and sensitive molecular identification and quantification of L. zosterae. In view of declining seagrass populations worldwide, this method will provide a valuable tool for seagrass ecologists and conservation projects.

Description: We explore the attenuation in the export ratio of jelly-POM (particulate organic matter) with depth as a function of the decay rate, temperature, and sedimentation rate. Using data from the Vertical Transport In the Global Ocean project, we compare ratios computed with the Martin-curve, with a particle-based parameterization, and with sediment-trap data. Owing to the temperature dependence of the decay rate (Q10 5 4.28), the jelly-POM export ratio below 500m is 2045% larger in subpolar and temperate areas than in the tropics. Vertical migration of gelatinous zooplankton leads to a variable starting depth of a jelly fall (death depth), which governs the start of remineralization, and the fate of the biomass. Owing to the absence of observations, we employ a sinking speed matrix ranging from 100 m d21 to 1500 m d21 to represent slow- and fast-sinking carcasses. The assumption of a constant decay rate k independent of temperature in other particle-based models may not be appropriate. These results provide information for including jelly-POM in global biogeochemical model formulations.

Description: This article documents the addition of 229 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Acacia auriculiformis × Acacia mangium hybrid, Alabama argillacea, Anoplopoma fimbria, Aplochiton zebra, Brevicoryne brassicae, Bruguiera gymnorhiza, Bucorvus leadbeateri, Delphacodes detecta, Tumidagena minuta, Dictyostelium giganteum, Echinogammarus berilloni, Epimedium sagittatum, Fraxinus excelsior, Labeo chrysophekadion, Oncorhynchus clarki lewisi, Paratrechina longicornis, Phaeocystis antarctica, Pinus roxburghii and Potamilus capax. These loci were cross-tested on the following species: Acacia peregrinalis, Acacia crassicarpa, Bruguiera cylindrica, Delphacodes detecta, Tumidagena minuta, Dictyostelium macrocephalum, Dictyostelium discoideum, Dictyostelium purpureum, Dictyostelium mucoroides, Dictyostelium rosarium, Polysphondylium pallidum, Epimedium brevicornum, Epimedium koreanum, Epimedium pubescens, Epimedium wushanese and Fraxinus angustifolia.