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  • Articles  (4,263)
  • Wiley  (4,263)
  • 2015-2019  (2,147)
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  • Articles  (4,263)
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  • 1
    Publication Date: 2019
    Description: Abstract Small ice‐covered lakes are stratified by temperature and solutes. Using time series measurements and profiles of temperature, specific conductance (SC), and dissolved oxygen obtained during spring 2014 and 2015, we identified the physical processes occurring under the ice and at ice‐off in two ~ 2 ha, 10‐m‐deep arctic lakes. The lakes are distinguished from other freshwater, ice‐covered lakes by solutes initially stabilizing the density stratification when temperature decreased in the lower water column and, with one exception, stabilizing it during warming. With an ice cover 1 m thick, wind‐forced internal waves occurred, with 2nd vertical mode waves prevalent where stratification was weak. Snowmelt induced near‐surface chemical stratification such that diurnal thermoclines formed with stable temperature stratification in a ~ 4‐m‐thick layer. Horizontal exchange was mediated by internal waves and gravity currents induced by greater heating near shore and as incoming snowmelt displaced water in shallow regions. Toward ice‐off, the gravity currents reduced temperature stratification between the snowmelt‐induced near‐surface pycnocline and the bottom pycnocline but slight increases in SC precluded radiatively driven convection. Snowmelt retention was greater with rapid spring heating. The lakes did not mix by ice‐off. With moderate winds, Wedderburn numbers decreased below 3 at ice‐off, and the near‐surface pycnocline upwelled and then deepened due to internal wave‐induced mixing. The concomitant downward mixing of heat caused a rapid onset of thermal stratification, and that, combined with incomplete mixing under the ice, led to persistence of near‐bottom depletion in oxygen and increased density and dissolved solutes.
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  • 2
    Publication Date: 2019
    Description: Abstract The globally distributed heterotrophic dinoflagellate Noctiluca scintillans (Macartney) Kofoid & Swezy is well known for its dense blooms and prominent displays of bioluminescence. Intriguingly, along the west coast of the U.S.A., its blooms are not bioluminescent. We investigated the basis for this regional loss of bioluminescence using molecular, cellular, and biochemical analyses of isolates from different geographic regions. Several prominent differences were identified in the nonbioluminescent strains: (1) the fused luciferase and luciferin binding protein gene (lcf/lbp) was present but its transcripts were undetectable; (2) lcf/lbp contained multiple potentially deleterious mutations; (3) the substrate luciferin was absent, based on the lack of luciferin blue autofluorescence and the absence of luciferin‐derived metabolites; (4) although the cells possessed scintillons, the organelles that contain the luminescent chemistry, electron microscopy revealed additional scintillon‐like organelles with an atypical internal structure; and (5) cells isolated from the California coast were 43% smaller than bioluminescent cells from the Gulf of Mexico. Phylogenetic analyses based on large subunit rDNA did not show divergence of the nonbioluminescent population in relation to bioluminescent N. scintillans from the Pacific Ocean and Arabian Sea. This study demonstrates that gene silencing and the lack of the luciferin substrate have resulted in the loss of an important dinoflagellate functional trait over large spatial scales in the ocean. As the bioluminescence system of dinoflagellates is well characterized, nonbioluminescent N. scintillans provide an ideal model to explore the evolutionary and ecological mechanisms that lead to intraspecific functional divergence in natural dinoflagellate populations.
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  • 3
    Publication Date: 2019
    Description: Abstract Global oceanic pH is lowering, which is causing great concern for the natural functioning of marine ecosystems. Current pH predictions are based on open ocean models; however, coastal zones are dynamic systems with seawater pH fluctuating temporally and spatially. To understand how coastal ecosystems will respond in the future, we first need to quantify the extent that local processes influence the pH of coastal zones. With this study, we show that over a single diurnal cycle, the total pH can fluctuate up to 0.2 units in a shallow seagrass‐dominated bay, driven by the photosynthesis and respiration of the vegetation. However, these biologically controlled pH fluctuations vary significantly over small distances. Monitoring conducted at neighboring sites with contrasting hydrodynamic regimes highlights how water motion controls the extent that the local pH is altered by the metabolism of vegetation. The interactive effects of hydrodynamics and vegetation were further investigated with an in situ experiment, where the hydrodynamics were constrained and thus the local water residence time was increased, displaying the counteractive effect of hydrodynamics on the pH change caused by vegetation. With this research, we provide detailed in situ evidence of the spatial variation of pH within marine ecosystems, highlighting the need to include hydrodynamic conditions when assessing the pH‐effects of vegetation, and identifying potential high‐pH refuges in a future low pH ocean.
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  • 4
    Publication Date: 2019
    Description: Abstract In cold and temperate climates, ice typically covers the surface of waterbodies during winter. Many of these systems are also weakly saline where, unlike seawater, the temperature of maximum density, , is higher than its freezing temperature, . This feature of the equation of state results in a stable temperature stratification when surface waters cool below . Conversely, salts excluded from the growing ice can destabilize the underlying water. Previous laboratory and field experiments demonstrated that excluded salts generate localized overturning and downward transport of salt, despite the persistence of a stable temperature gradient. Those experiments were not able to determine the processes responsible for this transport. Here, we use direct numerical simulations to visualize and characterize the plumes generated when ice excludes salt into a stable temperature gradient. We restrict our analysis to times much earlier than the diffusion timescale of temperature over the domain. We define a mass flux parameter ℜ that considers the strength of the reverse‐temperature stratification relative to the rate of salt exclusion. We identify two types of plumes whose characteristics depend mainly on ℜ: double‐diffusive salt‐fingering plumes and convective plumes. The former encourages transport of salt to the bottom without significantly mixing the temperature stratification, while the latter tends to mix the water column. We apply a scaled mass flux parameter to published laboratory and field observations in low‐salinity systems. These limited observations compare favorably with our numerical analysis.
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  • 5
    Publication Date: 2019
    Description: Abstract Increased stratification and mixed layer shoaling of the surface ocean resulting from warming can lead to exposure of marine dinitrogen (N2)‐fixing cyanobacteria to higher levels of inhibitory ultraviolet (UV) radiation. These same processes also reduce vertically advected supplies of the potentially limiting nutrient phosphorus (P) to N2 fixers. It is currently unknown how UV inhibition and P limitation interact to affect the biogeochemical cycles of nitrogen and carbon in these biogeochemically critical microbes. We investigated the responses of the important and widespread marine N2‐fixing cyanobacteria Crocosphaera (strain WH0005) and Trichodesmium (strains IMS 101 and GBR) to UV‐A and UV‐B under P‐replete and P‐limited conditions. Growth, N2 fixation, and carbon dioxide (CO2) fixation rates of Trichodesmium IMS 101 and Crocosphaera were negatively affected by UV exposure. This inhibition was greater for Trichodesmium IMS 101 than for Crocosphaera, which fixes N2 only during the night and so avoids direct UV damage. Negative effects of UV on both IMS 101 and Crocosphaera were less in P‐limited cultures than in P‐replete cultures. In contrast, no UV inhibition was observed in GBR, regardless of P availability. UV inhibition was related to different amounts of UV‐absorbing compounds produced by these isolates. Responses to UV radiation and P availability interactions were taxon‐specific, but our results indicated that in general, UV radiation effects on Trichodesmium and Crocosphaera range from negative to neutral. UV inhibition and its interactions with P limitation may thus have a substantial influence on the present day and future nitrogen and carbon cycles of the ocean.
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  • 6
    Publication Date: 2019
    Description: Abstract The carbonate chemistry of freshwater systems can range from inorganic carbon‐limited to supersaturated with respect to the atmosphere, and the pH of these systems can vary temporally and spatially from alkaline to acidic. Determining how these heterogeneous systems respond to increases in atmospheric CO2 is critical to understanding global impacts of these changes. Here, we synthesize 22 studies from a variety of systems to explore the effects of elevated CO2 on freshwater chemistry and microalgae, which form the base of autotrophic food webs. Across the variability in freshwater systems, elevated CO2 significantly affected water chemistry by decreasing pH and increasing dissolved inorganic carbon. Microalgae were also affected by elevated CO2 with measured increases in (1) nutrient acquisition through microalgal carbon‐to‐nutrient ratios, (2) photosynthetic activity, and (3) growth. While these effects were measured from controlled experiments, the results indicate a wide range of potential freshwater ecosystem effects from elevated atmospheric CO2. Our synthesis also identified several knowledge gaps. Generally, larger sample sizes and studies of longer duration are needed for more robust analyses and conclusions. Additionally, more field experiments across a range of freshwater ecosystem types and studies involving benthic species and multiple trophic levels are needed to strengthen global predictions across the broad variability found within and among freshwater systems.
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  • 7
    Publication Date: 2019
    Description: Abstract The effects of climate change, including ocean acidification and ocean heatwaves, on biological communities in estuaries are often uncertain. Part of the uncertainty is due to the complex suite of environmental factors in addition to acidification and warming that influence the growth of shells and skeletons of many estuarine organisms. The goal of this study was to document spatial and temporal variation in water column properties and to measure the in situ effects on larval and recently settled stages of ecologically important Olympia oysters (Ostrea lurida) and commercially important Pacific oysters (Crassostrea gigas) in a low‐inflow estuary with a Mediterranean climate in Northern California. Our results reveal that seasonal inputs of upwelled or riverine water create important and predictable gradients of carbonate system parameters, temperature, salinity, dissolved oxygen (DO), and other variables that influence oyster performance, and that the influence of these gradients is contingent upon the location in the estuary as well as seasonal timing. During upwelling events (dry season), temperature, carbonate chemistry, and DO had the greatest impact on oyster performance. During runoff events (wet season), gradients in salinity, nutrient concentrations, and total alkalinity driven by river discharge were comparatively more important. These results suggest that the spatial importance of carbonate chemistry and temperature are seasonally variable and are two of several other factors that determine oyster performance. We use these results to discuss future impacts on oysters given projected regional changes in the frequency and magnitude of upwelling and precipitation‐driven runoff events.
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  • 8
    Publication Date: 2019
    Description: Abstract Marine sinking particles transport carbon from the surface and bury it in deep‐sea sediments, where it can be sequestered on geologic time scales. The combination of the surface ocean food web that produces these particles and the particle‐associated microbial community that degrades them creates a complex set of variables that control organic matter cycling. We use targeted metabolomics to characterize a suite of small biomolecules, or metabolites, in sinking particles and compare their metabolite composition to that of the suspended particles in the euphotic zone from which they are likely derived. These samples were collected in the South Atlantic subtropical gyre, as well as in the equatorial Atlantic region and the Amazon River plume. The composition of targeted metabolites in the sinking particles was relatively similar throughout the transect, despite the distinct oceanic regions in which they were generated. Metabolites possibly derived from the degradation of nucleic acids and lipids, such as xanthine and glycine betaine, were an increased mole fraction of the targeted metabolites in the sinking particles relative to surface suspended particles, while algal‐derived metabolites like the osmolyte dimethylsulfoniopropionate were a smaller fraction of the observed metabolites on the sinking particles. These compositional changes are shaped both by the removal of metabolites associated with detritus delivered from the surface ocean and by production of metabolites by the sinking particle‐associated microbial communities. Furthermore, they provide a basis for examining the types and quantities of metabolites that may be delivered to the deep sea by sinking particles.
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  • 9
    Publication Date: 2019
    Description: Abstract To better understand lateral dispersion of buoyant and nonbuoyant pollutants within the surface waters of large lakes, two lateral dispersion experiments were carried out in Lake Michigan during the stratified period: (1) a dye tracking experiment lasting 1 d; and (2) a drifter tracking experiment lasting 24 d. Both the dye patch and drifters were surface‐released at the center of Lake Michigan's southern basin. Near‐surface shear induced by near‐inertial Poincaré waves partially explains elevated dye dispersion rates (1.5–4.2 m2 s−1). During the largely windless first 5 d of the drifter release, the drifters exhibited nearly scale‐independent dispersion ( K ∼ L0.2), with an average dispersion coefficient of 0.14 m2 s−1. Scale‐dependent drifter dispersion ensued after 5 d, with K ∼ L1.09 and corresponding dispersion coefficients of 0.3–2.0 m2 s−1 for length scales L = 1500–8000 m. The largest drifter dispersion rates were found to be associated with lateral shear‐induced spreading along a thermal front. Comparisons with other systems show a wide range of spreading rates for large lakes, and larger rates in both the ocean and the Gulf of Mexico, which may be caused by the relative absence of submesoscale processes in offshore Lake Michigan.
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  • 10
    Publication Date: 2019
    Description: Abstract Chemical pollution mixtures enter aquatic environments and interact with microorganisms in eclectic ways with disparate consequences for microbial ecosystem services. Can using a thermodynamic framework help to determine the net influence of a chemical mixture on the functional capacity of benthic microbial communities? We examined this question by comparing benthic stream microbial communities exposed to a gradient of neutral‐alkaline coalmine effluent. Using a combination of approaches (metagenomics, quantitative polymerase chain reaction [qPCR], and functional assays), we show that functional genes and pathways of microbial communities growing in mine effluent differed in composition, but not diversity. The majority of functional genes and pathways that changed decreased at sites exposed to mine effluent, resulting in lower abundances of nitrogenase and methanogen genes and fermentation pathways. However, selenate reductase gene abundance increased with water and sediment concentration of an ecologically important contaminant at mined sites: selenium. Denitrification genes nosZ and nirK differed between sites: metagenome‐based nosZ increased with dissolved nitrate concentration and qPCR‐based nirK had a hump‐shaped pattern across the mining gradient. Osmoprotectant gene abundance did not change. Extracellular enzyme assays and alkaline phosphatase gene relative abundance suggested that mined stream microbial communities may be constrained by phosphorus bioavailability. Subsidies and stressors related to changes in a set of functional genes and pathways, but differences were not consistently predictable using thermodynamic expectations. This suggests that pairing hypotheses for expected subsidies and stressors with post hoc explorations can yield valuable directions for future study of how microbial functional capacity responds to pollutant mixtures.
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  • 11
    Publication Date: 2019
    Description: Abstract Gas ebullition from aquatic systems to the atmosphere represents a potentially important fraction of primary production that goes unquantified by measurements of dissolved gas concentrations. Although gas ebullition from photosynthetic surfaces has often been observed, it is rarely quantified. The resulting underestimation of photosynthetic activity may significantly bias the determination of ecosystem trophic status and estimated rates of biogeochemical cycling from in situ measures of dissolved oxygen. Here, we quantified gas ebullition rates in Zostera marina meadows in Virginia, U.S.A. using simple funnel traps and analyzed the oxygen concentration and isotopic composition of the captured gas. Maximum hourly rates of oxygen ebullition (3.0 mmol oxygen m−2 h−1) were observed during the coincidence of high irradiance and low tides, particularly in the afternoon when oxygen and temperature maxima occurred. The daily ebullition fluxes (up to 11 mmol oxygen m−2 d−1) were roughly equivalent to net primary production rates determined from dissolved oxygen measurements indicating that bubble ebullition can represent a major component of primary production that is not commonly included in ecosystem‐scale estimates. Oxygen content comprised 20–40% of the captured bubble gas volume and correlated negatively with its δ18O values, consistent with a predominance of mixing between the higher δ18O of atmospheric oxygen in equilibrium with seawater and the lower δ18O of oxygen derived from photosynthesis. Thus, future studies interested in the metabolism of highly productive, shallow water ecosystems, and particularly those measuring in situ oxygen flux, should not ignore the bubble formation and ebullition processes described here.
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  • 12
    Publication Date: 2019
    Description: Abstract Evaluating marine species' population connectivity through larval transport can provide insight into the reliance of geographically separated areas on each other's recruitment and metapopulation resiliency. Using larval transport modeling, we assessed the significance of different regions in supporting the Narragansett Bay Northern quahog (Mercenaria mercenaria) population. We aimed to identify how areas with varying adult quahog biomass and implemented management strategies (based on water quality and commercial harvest) contribute to the overall stock's larval supply. Larval trajectories were modeled by integrating the currents from a realistic physical circulation model with quahog larval behavior applied to particles during spawning periods of 2006, 2007, and 2014. Modeled larval transport suggested that settlement occurs throughout Narragansett Bay, with 35% of spawned larvae swept out of the Bay to the coastal ocean and leaving the stock bounds. Quahogs in areas where shellfishing is prohibited due to water quality concerns produce a significant portion of the Bay's spawned larvae, theoretically serving as de facto spawning sanctuaries. The Providence River, located at the head of the Bay with high mature quahog biomass and currently closed to fishing due to water quality, is a significant source of quahog larvae for the stock. Simulated larval quahog settlement locations corresponded predominantly to sandy bottoms, with less spatial correspondence to commercial fisheries landings. Our work provides insight into the population connectivity of quahogs in Narragansett Bay and highlights the importance of considering oceanography and species' life history characteristics when constructing effective fisheries management plans.
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  • 13
    Publication Date: 2019
    Description: Abstract Ratios of nitrogen (N), phosphorus (P), and dissolved silica (DSi) influence how algal communities respond to nutrient loading, and DSi limitation can facilitate cyanobacterial dominance. The indicator of coastal eutrophication potential (ICEP), described previously by other researchers, predicts production by diatoms vs. nonsiliceous taxa based on deviation of nutrient loads from the Redfield ratio of 106C:16 N:20Si (N‐ICEP) or 106C:1P:20Si (P‐ICEP). The ICEP was calculated for the Mississippi‐Atchafalaya River basin, and four subbasins: the Ohio‐Tennessee, Missouri, Upper Mississippi, and Arkansas‐Red basins from 1979 to 2015. The P‐ICEP indicated a stoichiometric imbalance that favored cyanobacteria for all but the Arkansas‐Red subbasin. The N‐ICEP indicated conditions favorable for cyanobacteria in the Upper Mississippi, Ohio‐Tennessee, and the northern Gulf of Mexico. Agriculture is the predominant land use in the Upper Mississippi and Ohio‐Tennessee subbasins and these subbasins controlled the stoichiometry of the nutrients delivered to the northern Gulf of Mexico. The imbalance in N, P, and DSi inputs to the Gulf was greatest during spring and early summer, and in most years transitioned to favoring diatoms by August or September. Comparing the 1980–1994 and 2001–2015 periods, there was a significant increase in the P‐ICEP for the Upper Mississippi, Ohio‐Tennessee, and Missouri subbasins that appeared to arise mainly from increased P loading to surface waters in the those basins. The ICEP revealed patterns in stoichiometry of N, P, and DSi loads among the major tributaries to the Mississippi River, and an increasing risk of cyanobacterial blooms for inland waters in much of the Mississippi‐Atchafalaya River basin.
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  • 14
    Publication Date: 2019
    Description: Abstract Measurements of the particulate volume scattering function, βp(ψ), at light wavelength of 532 nm, particle size distribution, PSD, and several metrics of particulate concentration and composition were made on eight contrasting seawater samples from nearshore and coastal oceanic environments including river estuary and offshore locations. Both βp(ψ) and PSDs were measured on original (unfiltered) samples and particle size‐fractionated samples obtained through filtration using mesh filters with pore sizes of 5 and 20 μm. We present results based on direct size‐fractionated measurements and data adjusted for imperfect fractionation, which provide insights into the roles played by particle size and composition in angle‐resolved light scattering produced by highly variable natural assemblages of aquatic particles. Despite intricate interplay between the effects of particle size and composition, small particles (〈 5 μm in size) consistently produced a major or dominant contribution (~ 50–80%) to the particulate backscattering coefficient, bbp, in organic, either phytoplankton or nonalgal, dominated samples regardless of significant variations in PSD between these samples. The notable exception was a sample dominated by large‐celled diatoms from microphytoplankton size range, which exemplifies a scenario when large particles (〉 20 μm) can produce a considerable contribution (~ 40%) to bbp. We also observed a trend for inorganic‐dominated samples exhibiting consistently lower contributions (~ 30–40%) of small particles to bbp. The particle size‐based budget for the particulate scattering coefficient, bp, indicates a significant decrease in the role of small particles accompanied by an increase in the role of larger particles compared to the bbp budget.
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  • 15
    Publication Date: 2019
    Description: Abstract There is a growing concern about the implications of accelerated thawing of permafrost for regional biogeochemical cycling of carbon and other bioreactive elements. One such element of concern is nitrogen, and in this study, we investigated the diversity and biogeography of potential diazotrophs within a series of thaw ponds representing different ontogenetic stages in pond development. Using metagenomic sequence data from subarctic thaw ponds, we identified an array of nitrogenase genes across the ponds. The iron‐only nitrogenase gene (anfH) was positively correlated with sulfate, while there was no correlation with methane despite previous findings that organisms carrying anfH can simultaneously participate in nitrogen fixation and methanogenesis. Sulfate is known to inhibit microbial uptake of molybdate, an element essential for the activity of the nifH (molybdenum‐iron) nitrogenase and this may explain the high potential for nitrogen fixation utilizing anfH in sulfate‐rich ponds. NifH was particularly abundant in the hypolimnion of the deeper and older ponds, with Deltaproteobacteria and Chlorobi as the putative dominant diazotrophs. In the epilimnetic waters, nifH composition was more variable, with various Gammaproteobacteria as abundant representatives, while cyanobacterial diazotrophs were scarce. Interestingly, nifH gene abundance was significantly positively correlated with in situ methane concentration. Based on genome‐resolved metagenomics, we hypothesize that diazotrophs and methanogens engage in syntrophic interactions in anoxic waters, possibly via propionate oxidation or (in Geobacter) by interspecies electron transfer. Our results also suggest that nitrogen fixers may supply bioreactive nitrogen compounds to the thaw pond communities, thereby enhancing growth and activity of methanogens.
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  • 16
    Publication Date: 2019
    Description: Abstract Deposition of aerosolized desert dust can affect marine microbial community structure and function through pulsed addition of limiting micro‐ and macronutrients. However, few studies have captured responses to dust deposition in situ following trans‐oceanic transport. We conducted a 26‐d time series evaluating biogeochemical and microbial community response to Saharan dust deposition in surface waters in the subtropical western Atlantic (Florida Keys National Marine Sanctuary, U.S.A.). Following periods of elevated atmospheric dust concentrations, particulate and dissolved iron concentrations increased in surface waters. Autotrophic picoeukaryote abundance increased rapidly, followed by increases in the abundance of heterotrophic bacteria and Synechococcus. Concomitant to cell count changes, we observed successional shifts in bacterial community composition. The relative abundances of Prochlorococcus and Pelagibacter declined with dust arrival, while relative abundance of heterotrophic bacteria increased, beginning with Vibrionales and followed sequentially by Chrysophyceae, Rhodobacteriaceae, and Flavobacteriaceae. Finally, a peak in Synechococcus cyanobacteria was observed. These results provide new insight into microbial community succession in response to Saharan dust deposition, their association with temporal dynamics in surface water dissolved and particulate iron concentrations, and a potential role for bioprocessing of dust particles in shaping marine microbial responses to deposition events.
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  • 17
    Publication Date: 2019
    Description: Abstract The on‐going discussion concerning how environmental factors determine phytoplankton size structure has centered around two hypotheses: (H1) The resource‐size relationship predicts that normalized biovolume size spectrum (NBSS) slopes for phytoplankton are progressively shallower with increasing resource availability and (H2) The temperature‐size relationship predicts that phytoplankton NBSS slopes steepen with increasing water temperature. To test these hypotheses, we examined 72 phytoplankton assemblage collections in the Kuroshio east of Taiwan. Total phytoplankton biomass was used as a proxy for resource availability instead of nutrients because nutrients are depleted and do not represent resource availability for oligotrophic seas. We found no significant relationship between NBSS slopes with temperature, providing little support for the temperature‐size rule. In contrast, a positive relationship between NBSS slopes and total biomass for most of the year lends general support to the resource‐size relationship, except during the winter and early spring. To explain this exception, we hypothesize that resource pulses occurring during the cold seasons are used more efficiently by small cells and promote faster growth of small relative to large phytoplankton because these pulses take place after a long period of resource depletion in oligotrophic seas; thus, the NBSS slopes become much steeper than would be expected from a positive resource‐size relationship. This deviation can be considered as nonsteady state in terms of phytoplankton size structure relative to resources. Nevertheless, we cannot rule out the possibility that grazing effects also play an important role in controlling phytoplankton size structure.
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  • 18
    Publication Date: 2019
    Description: Abstract Suspended marine particles constitute most of the particulate organic matter pool in the oceans, thereby providing substantial substrates for heterotrophs, especially in the mesopelagic. Conversely, sinking particles are major contributors to carbon fluxes defining the strength of the biological carbon pump (BCP). This study is the first to investigate the differential influence of eukaryotic communities to suspended and sinking particles, using 18S rRNA gene sequencing on particles collected with a marine snow catcher in the mixed layer and upper mesopelagic of the Scotia Sea, Southern Ocean. In the upper mesopelagic, most eukaryotic phytoplankton sequences belonged to chain‐forming diatoms in sinking particles and to prymnesiophytes in suspended particles. This suggests that diatom‐enriched particles are more efficient in carbon transfer to the upper mesopelagic than those enriched in prymnesiophytes in the Scotia Sea, the latter more easily disintegrating into suspended particles. In the upper mesopelagic, copepods appeared most influential on sinking particles whereas soft‐tissue metazoan sequences contributed more to suspended particles. Heterotrophic protists and fungi communities were distinct between mixed layer and upper mesopelagic, implying that few protists ride along sinking particles. Furthermore, differences between predatory flagellates and radiolarians between suspended and sinking particles implied different ecological conditions between the two particles pools, and roles in the BCP. Molecular analyses of sinking and suspended particles constitute powerful diagnostic tools to study the eukaryotic influence on the BCP in a more holistic manner compared to classic carbon export studies focusing on sinking particles.
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  • 19
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    Wiley
    Publication Date: 2019
    Description: Limnology and Oceanography, Volume 64, Issue 5, Page i-iii, September 2019.
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  • 20
    Publication Date: 2019
    Description: Abstract Biogeochemical silicon (Si) cycling in coastal systems is highly influenced by anthropogenic perturbations in recent decades. Here, we present a systematic study on the distribution of stable Si isotopes of dissolved silicate (δ30SiDSi) in a highly eutrophic coastal system, the Baltic Sea. Besides the well‐known processes, diatom production and dissolution regulating δ30SiDSi values in the water column, we combined field data with a box model to examine the role of human disturbances on Si cycling in the Baltic Sea. Results reveal that (1) damming led to increased δ30SiDSi values in water but had little impacts on their vertical distribution; (2) decrease in saltwater inflow due to enhanced thermal stratification had negligible impacts on the δ30SiDSi distribution. An atypical vertical distribution of δ30SiDSi with higher values in deep water (1.57–1.95‰) relative to those in surface water (1.24–1.68‰) was observed in the central basin. Model results suggest the role of enhanced biogenic silica (BSi) deposition and subsequently regenerated dissolved silicate (DSi) flux from sediments. Specifically, eutrophication enhances diatom production, resulting in elevated exports of highly fractionated BSi to deep water and sediments. In situ sedimentary geochemical processes, such as authigenic clay formation, further fractionate Si isotopes and increase pore‐water δ30SiDSi values, which then leads to pore‐water DSi flux carrying higher δ30SiDSi compositions into deep water. Our findings provide new quantitative information on how the isotope‐based Si cycle responds to human perturbations in coastal seas and shed lights on shifts of Si export to open ocean.
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  • 21
    Publication Date: 2019
    Description: Abstract Dissolved organic matter (DOM) plays a key role in the carbon cycle of freshwater ecosystems. We explored DOM composition from six lakes encompassing a typical latitudinal gradient of lakes in northeast of China (41.9°N–48.6°N). Generally, the relative contents of protein‐like components decreased while humic‐like components increased with increasing latitude. Additionally, the results from modified two‐dimensional correlation spectroscopy indicated that humic‐like components with relatively simple structure were formed earlier than those with relatively complex structure. Furthermore, structural equation models suggested that at higher latitude, lake DOM tended to stabilize as protein‐like component was transformed into humic‐like component. We also found that nutrients (e.g., nitrogen and phosphorus) were key factors affecting DOM composition in low‐latitudinal lakes, whereas temperature was the key factor affecting DOM composition in high‐latitudinal lakes. In conclusion, this study identified the factors which explained the observed latitudinal pattern of DOM in northeast lakes of China. This study provided a theoretical basis for DOM management of lakes at different latitudes.
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  • 22
    Publication Date: 2019
    Description: Abstract The dynamics of freeze and thaw events in Antarctic sea ice impart chemical changes in the underlying sea water. Trace metals in sea ice and accumulated through deposition of dust are released into sea water as sea ice breaks up in spring. Clams such as Laternula elliptica incorporate a record of these and associated chemical dynamics in their carbonate shells. In 2012, we collected samples of L. elliptica from three sites along a sea ice persistence gradient in McMurdo Sound, Ross Sea Antarctica. Concentrations of trace metals in the chondrophore of each shell were measured by laser ablation inductively coupled plasma mass spectrometry. Ablations transected annual growth increments creating time series ranging in length from 13 to 25 yr. An 8‐yr time period of persistent sea ice, associated with presence of the B‐15 and C‐19 icebergs at the entrance of McMurdo Sound, was clearly resolved in the trace element time series. Conservative trace metals (Sr, Ba) were found at higher concentrations, and highly scavenged elements (Pb, Cu) were found at lower concentrations at sites with more persistent sea ice and during the 8‐yr period of iceberg‐influenced sea ice persistence. Bioactive trace metals (Fe, Ni) were found in higher concentrations during ice free conditions, associated with a period of high pelagic productivity. Our results provide an important case study for understanding the chemical signature of changing sea ice dynamics as reflected in bivalve shell material under a changing Antarctic climate.
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  • 23
    Publication Date: 2019
    Description: Abstract Rhizosphere microbiota has received much attention due to their associations with plant growth and their fundamental importance in terrestrial ecosystems. However, relatively few studies have focused on rhizosphere microbial communities associated with aquatic macrophytes in freshwater lakes. We hypothesized that the rhizosphere microbiome would reflect the presence of macrophyte roots and the concomitant microhabitat conditions the roots create. Here, high‐throughput sequencing and network analysis were employed to compare the composition and structure of bacterial communities in the rhizosphere of two common emergent macrophytes, Zizania latifolia and Phragmites australis, with the surrounding sediments in Lake Taihu (China). Results indicated that bacterial diversity, community composition, and co‐occurrence networks differed between the communities of bulk sediments and the communities of rhizosphere and surface sediments. Richness and phylogenetic diversity were higher and more taxa were enriched in the rhizosphere and surface sediment communities compared with bulk sediment communities. No differences were detected between bacterial communities in rhizosphere and surface sediments, nor between rhizospheres sediment communities of the two macrophyte species. Anaerobic taxa were more abundant in bulk sediment communities. Among the co‐occurrence networks, more nodes (operational taxonomic units) and edges (connections) with higher average degree as well as more topologically important nodes were found in rhizosphere and surface sediment communities relative to bulk communities. These findings suggest that rhizosphere microbiome communities are influenced by the presence of macrophyte roots, with oxygenated rhizosphere and surface sediment communities being more diverse, and organized into more interconnected co‐occurrence networks.
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  • 24
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    Wiley
    Publication Date: 2019
    Description: Limnology and Oceanography, Volume 64, Issue 5, Page iii-iii, September 2019.
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  • 25
    facet.materialart.
    Unknown
    Wiley
    Publication Date: 2019
    Description: Limnology and Oceanography, Volume 64, Issue 5, Page i-ii, September 2019.
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  • 26
    Publication Date: 2019
    Description: Abstract Field data, a three‐dimensional hydrodynamic numerical model, and modal decomposition were used to examine the baroclinic response to wind in two interconnected multiarm lakes, Knewstubb and Natalkuz Lakes (British Columbia, Canada). Similar to lakes of simpler geometry, the first‐vertical first‐horizontal mode (V1H1) of Knewstubb and Natalkuz Lakes was found to be the most energetic mode. This V1H1 dominance is attributed to similarity between the relatively uniform distributions of along‐thalweg wind and surface‐layer flow for the V1H1 mode. Two bathymetric features, the geometric constriction between Knewstubb and Natalkuz Lakes, and changes in thalweg orientation relative to the wind field act to create subbasins in which wind forcing causes local metalimnetic tilts. These subbasin scale tilts deepen the metalimnion at the downwind ends of the subbasins, raise the metalimnion at the upwind ends, and are superimposed on the lake‐wide V1H1 tilt. The metalimnetic tilts in the subbasins are attributed to higher horizontal modes that are equivalent to V1H1 modes of the subbasins. Because the thickness of the metalimnion is significant, the subbasin metalimnetic tilts occur with variations in the metalimnetic thickness along the subbasins; the metalimnion is compressed at the downwind end and expanded at the other end of each subbasin. This variability in thickness leads to metalimnetic intrusions following the relaxation of wind forcing. The findings of this study contribute to characterizing the baroclinic response to wind in lakes of complex bathymetry. In particular, this study helps in understanding the effect of bathymetric features on modal composition of the baroclinic response.
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  • 27
    Publication Date: 2019
    Description: Abstract Very few studies have focused on the biogeography and genetic diversity of aquatic invertebrate zooplankton from the Qinghai‐Tibetan Plateau, an important biogeographic hotspot. The geological uplift of this region created special environments requiring adaptive genetic diversification of the resident lineages. Here, we developed and used the first set of high‐resolution microsatellite markers for the Daphnia similis species complex. We screened this species in 23 (out of 303) lakes across China, covering a large geographical and ecological range of habitats. High population clonal diversity of the D. similis species complex was found, regardless of their geographical origin. However, four Tibetan Daphnia sinensis populations showed substantially lower clonal diversity. Interestingly, D. sinensis populations from two regions, Eastern China and the Qinghai‐Tibetan Plateau of Western China, were found to be clearly differentiated from each other. Lakes inhabited by Western D. sinensis were of a lower trophic level, higher altitude, and more likely to freeze in the winter. This study contributes to an understanding of adaptation to their special environments by the freshwater invertebrates in the Qinghai‐Tibetan Plateau.
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  • 28
    Publication Date: 2019
    Description: Abstract Single‐lake studies offer an opportunity for understanding, predicting, and mitigating local or regional threats to lake ecosystems. Our goal was to understand how concurrent environmental stressors such as climate change, eutrophication, and salinization affect long‐term lake water quality. We report epilimnetic changes in 18 water‐quality parameters collected at seven sites from 1980 to 2016 in Lake George, a large oligotrophic lake in the Adirondack Park, New York, USA. Improvements and deteriorations in water quality occurred over 37 years. We observed a 32% increase in chlorophyll a associated with an increase in orthophosphate, but not total phosphorus or a warming epilimnion (0.05°C/year). Salinization from road deicing salts contributed to the largest deterioration in water quality. However, chloride concentrations and the current rate of increase are low enough that few ecological impacts are likely to occur over the next few decades. Increasing calcium concentrations were not high enough to facilitate the persistence of invasive species in the lake such as zebra mussels (Dreissena polymorpha) but are sufficient for Asian clams (Corbicula fluminea) and the spiny water flea (Bythotrephes longimanus). Similar to other lakes, environmental legislation has supported recovery from acidification, indicated by reduced sulfate and nitrate, and increased alkalinity and pH. Declines in water quality were minor relative to other lakes, suggesting that decades of tourism and development occurred without major deterioration in water quality, but management efforts are needed to curb salinization in the Lake George watershed, particularly as it relates to sodium concentrations to prevent a loss of drinking water quality.
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  • 29
    Publication Date: 2019
    Description: Abstract Colonies of the N2‐fixing cyanobacterium Trichodesmium can harbor distinct chemical microenvironments that may assist the colonies in acquiring mineral iron from dust. Here, we characterized O2 and pH gradients in and around Trichodesmium colonies by microsensor measurements on 〉 170 colonies collected in the Gulf of Eilat over ∼ 2 months. O2 concentrations and pH values in the center of single colonies decreased in the dark due to respiration, reaching minimum values of 70 μmol L−1 and 7.7, whereas in the light, O2 and pH increased due to photosynthesis, reaching maximum values of 410 μmol L−1 and 8.6. Addition of dust and bacteria and increasing colony size influenced O2 and pH levels in the colonies, yet values remained within the range observed in single natural colonies. However, lower values down to 60 μmol L−1 O2 and pH 7.5 were recorded in the dark in dense surface accumulations of Trichodesmium. Using radiolabelled ferrihydrite, we examined the effect of these conditions on mineral iron dissolution and availability to Trichodesmium. Dark‐incubated colonies did not acquire iron from ferrihydrite faster than light‐incubated colonies, indicating that the dark‐induced decrease in pH and O2 within single colonies is too small to significantly increase mineral iron bioavailability. Yet, ligand‐promoted dissolution of ferrihydrite, a mechanism likely applied by Trichodesmum for acquiring mineral iron, did increase at the lower pH levels observed in surface accumulations. Thus, Trichodesmium surface blooms in their final stage may harbor chemical conditions that enhance the dissolution and bioavailability of mineral iron to the associated microbial community.
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  • 30
    Publication Date: 2019
    Description: Abstract In warm monomictic lakes, the hypolimnion is important for accumulating and decomposing organic matter derived from surface production, and the regenerated nutrients will be supplied to the epilimnion through winter vertical mixing. So far, we know little about microbial community composition and function in the hypolimnion when the significant thermal stratification disappears. In this study, we investigated microbial community compositions and functional gene contents by means of metagenomics along a depth profile in the warm monomictic alpine Lake Fuxian during holomictic period. Overall, bacteria were the dominant microbial group at different water depths, while phages had their high relative abundance in the epilimnion. We observed slight thermal but strong chemical stratification even during this typical winter overturn. The anaerobic respiration with nitrate and sulfate as the terminal electron acceptors was accumulated at bottom of hypolimnionin as indicated through metabolic pathway reconstruction. We were able to get 440 metagenome‐assembled genomes (MAGs) and unraveled a high genomic diversity of freshwater pelagic microbiomes along this depth profile. We furthermore defined a new class of “Plancto_FXH1” of Planctomycetes from these MAGs, of which a distinct nitrate reduction operon was identified. Representatives of this phylum mainly thrive in the hypolimnion as previously suspected, but few lineages were detected in the epilimnion. In summary, metagenomics enabled us to find a new group of Planctomycetes, probably involved in denitrification in the hypolimnion in Lake Fuxian, which expand our knowledge on denitrifying bacterial diversity and their denitrification potential in deep freshwater lakes.
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  • 31
    Publication Date: 2019
    Description: Abstract Many planktonic consumers alter their behavior depending on the concentration of food in the environment, but responses to changes in food quality, as characterized by its elemental stoichiometry, are less well understood. Because of different nutritional demands across life history stages, consumer's responses to prey quality may vary across ontogeny. We build on previous observations of consumer selectivity and responses to prey presence by examining responses of displacement and movement patterns to prey stoichiometry. We used high‐speed videography to quantify displacement and movement patterns of the marine copepod, Acartia tonsa, as they varied with elemental content of microalgal food offered during preconditioning and during imaging trials. Life stages were sensitive to different nutrient elements in prey, with movement in copepodites generally varying with nitrogen content, and in adults with both nitrogen and phosphorus content. Net displacement was lower when adults and copepodites were offered fully replete and nitrogen‐replete food, respectively. Displacement of adults was more sensitive to the quality of food offered during preconditioning, and displacement of copepodites was affected by food quality during both preconditioning and trials. Naupliar displacement and movement patterns were generally insensitive to food quality. Only adults significantly altered movement patterns associated with feeding in response to food quality; adult helical swimming significantly increased in the treatments in which stoichiometrically replete food was offered in both preconditioning and behavioral trials. Older stages of A. tonsa alter movement in response to food quality in ways that may allow the selective use of patches of high‐quality prey.
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  • 32
    Publication Date: 2019
    Description: Abstract Anticyclonic (warm‐core) mesoscale eddies (WCEs) in the Eastern Indian Ocean carry higher surface chlorophyll signatures than cyclonic (cold‐core) eddies (CCEs). Paradoxically, WCEs host rock lobster larvae (phyllosomas) with lower lipid stores and protein reserves than phyllosomas in CCEs, suggesting a poorer nutritional status. We assess primary productivity and zooplankton isotopic data from eight eddies across four research voyages (2003–2011) to determine how this contradiction might occur. We find that WCEs and CCEs are equally productive per unit chlorophyll a, but depth‐integrated primary production (PP) is greater in eddies with shallower mixed layers (MLs), especially in CCEs. MLs tend to be shallower in CCEs than in WCEs because the pycnocline is closer to the surface. This, in combination with stronger stratification in CCE euphotic zones than those of WCEs, supports greater flagellate and dinoflagellate populations in CCEs. These phytoplankton provide high‐quality nutrition for zooplankton, which feed on average ~ 0.6 trophic level lower in CCEs with the shallowest MLs, accumulating high lipid stores. Conversely, WCEs have, on average, ~ 70 m deeper MLs than CCEs, and host a phytoplankton community with more diatoms. Diatoms provide lower quality food for zooplankton, and zooplankton lipid stores in WCEs decline with trophic level, and possibly, with time after initial (or seasonal) nutrient injection. As a result, phyllosomas in CCEs have higher energy and lipid content than those in warm‐core eddies. The resolution of the paradox, therefore, is that the higher surface chlorophyll signatures of WCEs are not representative of the nutritional value of the prey field of the phyllosoma. We also conclude that interannual variations of mixed layer depth occur at a regional scale, controlling PP.
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  • 33
    Publication Date: 2019
    Description: Limnology and Oceanography, EarlyView.
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  • 34
    Publication Date: 2019
    Description: Abstract Transparent exopolymer particles (TEP) are ubiquitous in aquatic ecosystems and contribute, for example, to sedimentation of organic matter in oceans and freshwaters. Earlier studies indicate that the formation of TEP is related to the in situ activity of phytoplankton or bacteria. However, terrestrial sources of TEP and TEP precursors are usually not considered. We investigated TEP concentration and its driving factors in boreal freshwaters, hypothesizing that TEP and TEP precursors can enter freshwaters via terrestrial inputs. In a field survey, we measured TEP concentrations and other environmental factors across 30 aquatic ecosystems in Sweden. In a mesocosm experiment, we further investigated TEP dynamics over time after manipulating terrestrial organic matter input and light conditions. The TEP concentrations in boreal freshwaters ranged from 83 to 4940 μg Gum Xanthan equivalent L−1, which is comparable to other studies in freshwaters. The carbon fraction in TEP in the sampled boreal freshwaters is much higher than the phytoplanktonic carbon, in contrast to previous studies in northern temperate and Mediterranean regions. Boreal TEP concentrations were mostly related to particulate organic carbon, dissolved organic carbon, and optical indices of terrestrial influence but less influenced by bacterial abundance, bacterial production, and chlorophyll a. Hence, our results do not support a major role of the phytoplankton community or aquatic bacteria on TEP concentrations and dynamics. This suggests a strong external control of TEP concentrations in boreal freshwaters, which can in turn affect particle dynamics and sedimentation in the recipient aquatic ecosystem.
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  • 35
    Publication Date: 2019
    Description: Abstract Organic carbon (OC) storage in coastal vegetated ecosystems is increasingly being considered in carbon financing and climate change mitigation strategies. However, spatial heterogeneity in these “blue carbon” stocks among and within habitats has only recently been examined, despite its considerable implications. Seagrass meadows have potential to store significant amounts of carbon in their sediments, yet studies comparing sediment OC content at regional and meadow scales remain sparse. Here, we collected sediment cores from six temperate eelgrass (Zostera marina) meadows on the coast of British Columbia, Canada, to quantify sediment OC stocks, accumulation rates, and sources, and to examine local and regional drivers of variability. Sediment OC content was highly variable—across all sites, stocks in the top 0–5 cm ranged from 83 to 1089 g OC m−2, while the 15–20 cm stocks exhibited a 24‐fold difference, from 59 to 1407 g OC m−2. Carbon accumulation rates ranged from 4 to 33 g OC m−2 yr−1. Isotopic mixing models revealed that sediment OC was primarily terrestrial carbon (41.3%) and canopy‐forming kelps (33.3%), with a smaller contribution of eelgrass (25.3%). Here, we show that regional variability in OC content exceeds meadow‐scale variability. This result is likely driven by landscape factors, most notably relative water motion, representing a more dominant control on seagrass OC accumulation than meadow‐scale factors such as canopy complexity. These findings elicit caution when scaling up seagrass meadow OC content and demonstrate that measures of the hydrodynamic environment could improve estimates of carbon storage in temperate soft sediment habitats.
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  • 36
    Publication Date: 2019
    Description: Abstract Ongoing alterations to estuaries by inland agricultural intensification and coastal development could affect their capacity to regulate the flux of excess terrestrial nitrogen (N) to the coastal ocean. Here, a new multiform δ15N metric was developed to measure how “pristine,” moderately impacted, and highly degraded estuaries recycle (assimilation, mineralization) and remove (denitrification, anaerobic ammonium oxidation) N. Organic (dissolved and particulate, δ15N and δ13C) and inorganic (nitrate and ammonium, δ15N and δ18O) N forms were measured over the salinity gradient in the wet and dry season in subtropical estuaries receiving increasing terrestrial N loads (pristine: 16 kg N d−1, moderate: 150 kg N d−1, degraded: 630 kg N d−1). The difference in the inorganic vs. organic pool δ15N composition increased between the pristine (0 ± 2‰), moderate (10 ± 6‰), and degraded (20 ± 8‰) systems, indicating that N recycling decreased as degradation increased. The N2O concentrations, NO3− dual isotope values, and offsets between “measured” and “mixing expected” δ15N values further revealed that microbial processes removed up to 30% of the N load entering the moderately degraded estuary, but only 9% in the highly degraded estuary. Hydrologic differences (depth and flushing times [FTs]) could not fully explain these shifts in N fate between the estuaries and seasons, which instead aligned with nonlinear increases in phytoplankton biomass and light penetration with increasing N loads. These isotopic indicators provide direct evidence that estuaries switch from “reactors” that assimilate and remove terrestrial N to “pipes” that transport N directly to sea as degradation increases.
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  • 37
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    Wiley
    Publication Date: 2019
    Description: Limnology and Oceanography, Volume 64, Issue 3, Page i-ii, May 2019.
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  • 38
    facet.materialart.
    Unknown
    Wiley
    Publication Date: 2019
    Description: Limnology and Oceanography, Volume 64, Issue 3, Page iii-iii, May 2019.
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  • 39
    Publication Date: 2019
    Description: Abstract For visual predators, sufficient light is critical for prey detection and capture. Because light decays exponentially with depth in aquatic systems, vertical movement has become a widespread strategy among zooplankton for avoiding visual predation. However, topographical features such as seamounts have been shown to block their descent, trapping them in illuminated waters with potential feeding benefits for visually searching fish. Here, we present an extensive and previously unpublished dataset on the vertical distribution of zooplankton in the topographically rugged Barents Sea, a continental shelf region hosting some of the largest fish stocks in the world. By modeling the ambient light exposure of zooplankton in relation to the bathymetry, we find support for a similar blockage mechanism. During daytime, zooplankton are exposed to four orders of magnitude more light above shallow banks than in the deeper water surrounding the banks. We show that zooplankton depth distributions are highly related to zooplankton size and that the bottom constrains the vertical distributions. Consequently, zooplankton remain in the planktivores’ visual feeding habitat over the banks but not in deeper areas. Bottom topography and light absorbance are significant determinants of the seascape ecology across continental shelves with heterogeneous bathymetry.
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  • 40
    Publication Date: 2019
    Description: Abstract Daily vertical migrations of zooplankton have been shown to affect nutrient distributions and dissolved gas concentrations in lakes and oceans via active internal transport and metabolic consumption. Additionally, mixing generated by these migrations has been shown to have the capacity to alter the physical structure of a water column, with potential further implications for its biogeochemical structure. In this work, we use laboratory experiments to investigate the importance of biologically generated mixing relative to other processes in determining the biogeochemical structure of a water column inhabited by migrating zooplankton. Specifically, we consider oxygen, a highly ecologically relevant scalar, and the competition between metabolic consumption and biogenic mixing in a stably stratified water column with a hypoxic layer. Using laboratory experiments and a one‐dimensional model informed by those measurements, we illustrate the potential for migrating animals to alleviate hypoxia, introducing complex feedbacks between the presence of animals and the biogeochemical state of their surroundings. Furthermore, we demonstrate the feasibility of oxygen as a potential indicator of biogenic mixing for future in situ investigations given its low diffusivity and higher signal‐to‐noise ratio.
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  • 41
    Publication Date: 2019
    Description: Abstract Eelgrass (Zostera marina) coverage and height were evaluated in 16 estuaries in the Southern Gulf of St. Lawrence, Canada, using boat‐based sonar surveys to determine the dominant factors in the decline of eelgrass in the region. Eelgrass coverage was modeled from the sonar surveys and quantified as the percentage of available habitat occupied—with habitat being defined by salinity limits (〉 10 PSU) and depth (〈 3 m). Estuaries showed a marked variation in eelgrass coverage ranging between 6% and 57% of available habitat, with eelgrass absent in the upper estuary of estuaries with the highest nitrate loading. The Dunk River estuary showed a decline in eelgrass coverage between 1967 and 2014, a period of increasing nitrogen loading. Measures of eelgrass height were not related to coverage endpoints, suggesting that height variables are not suitable endpoints for overall eelgrass health. Analysis of the influence of environmental factors showed that the factor that consistently correlated to eelgrass coverage was nitrate‐N loading while the factor most influencing eelgrass height was light attenuation. A nonlinear logistic loading‐effect model relating eelgrass coverage to nitrate‐N loading indicated that 10%, 25%, 50%, 75%, and 90% decline in eelgrass would be expected to occur in response to estuarine nitrate‐N loads of 1.3 kg ha−1 yr−1, 8.0 kg ha−1 yr−1, 50.0 kg ha−1 yr−1, 312 kg ha−1 yr−1, and 1947 kg ha−1 yr−1, respectively. These results suggest that inorganic nitrogen loading is the most significant factor to be addressed by environmental managers when addressing eelgrass declines in estuaries similar to those studied.
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  • 42
    Publication Date: 2019
    Description: Abstract Multiple environmental factors control benthic community patterns, and their relative importance varies with spatial scale. Since this variation is difficult to evaluate quantitatively, extensive sampling across a broad range of spatial scales is required. Here, we present a first case study on Southern Ocean shelf benthos, in which mega‐epibenthic communities and biota‐environment relationships have been explored at multiple spatial scales. The analyses encompassed 20 seafloor, water‐column, and sea‐ice parameters, as well as abundances of 18 mega‐epibenthic taxa in a total of 2799 high‐resolution seabed images taken at 28 stations at 32–786 m depth off the northern Antarctic Peninsula. Based on a priori nesting of sampling stations into ecoregions, subregions, and habitats, analyses indicated most pronounced patchiness levels at finest (within transects among adjacent seabed photos) and largest (among ecoregions) spatial scale considered. Using an alternative approach, explicitly involving the spatial distances between the geo‐referenced data, Moran's Eigenvector mapping (MEM) classified the continuum of spatial scales into four categories: broad (〉 60 km), meso (10–60 km), small (2–10 km), and fine (〈 2 km). MEM analyses generally indicated an increase in mega‐epibenthic community complexity with increasing spatial scale. Moreover, strong relationships between biota and environmental drivers were found at scales of 〉 2 km. In contrast, few environmental variables contributed to explaining biotic structures at finer scales. These are likely rather determined by nonmeasured environmental variables, as well as biological traits and interactions that are assumed to be most effective at small spatial scales.
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  • 43
    Publication Date: 2019
    Description: Abstract At the Paleozoic–Mesozoic boundary, the dominance of marine eukaryotic algae shifted from the green (chlorophyll b) to the red (chlorophyll c) superfamily. Selection pressures caused by the bioavailability of trace metals associated with increasing oxygenation of the ocean may have played a key role in this algal revolution. From a scan of elemental compositions, a significant difference in the cellular Cr/P quota was found between the two superfamilies. Here, the different responses to high levels of Cr exposure reveal contrasting strategies for metal uptake and homeostasis in these algal lineages. At high Cr(VI) concentrations, red lineages experience growth inhibition through reduced photosynthetic capability, while green lineages are completely unaffected. Moreover, Cr(VI) has a more significant impact on the metallomes of red lineage algae, in which metal/P ratios increased with increasing Cr(VI) concentration for many trace elements. Green algae have higher specificity transporters to prevent Cr(VI) from entering the cell, and more specific intracellular stores of Cr within the membrane fraction than the red algae, which accumulate more Cr mistakenly in the cytosol fraction via lower affinity transport mechanisms. Green algal approaches require greater nutrient investments in the more numerous transport proteins required and management of specific metals, a strategy better adapted to the resource‐rich coastal waters. By contrast, the red algae are nutrient‐efficient with fewer and less discriminate metal transporters, which can be fast and better adapted in the oligotrophic, oxygenated open ocean, which has prevailed since the deepening of the oxygen minimum zones at the start of the Mesozoic era.
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  • 44
    Publication Date: 2019
    Description: Abstract Near‐surface wind speeds have changed over recent decades, raising questions about the extent to which these changes are altering the vertical thermal structure of lakes and affecting lake food webs. Neo‐ and paleolimnological techniques were used to assess wind‐driven changes in lake thermal habitat and resulting effects on primary producers in two lakes in Isle Royale National Park, an island archipelago located in Lake Superior, where wind speed has increased in recent decades. Responses in Siskiwit Lake, a large (16 km2 surface area), deep (Zmax = 49 m), oligotrophic lake, were compared to those of Lake Desor, a moderately large (4.3 km2) but shallower (Zmax = 13 m), mesotrophic lake. High‐frequency sensor data suggested that changes in wind speed affected epilimnion thickness in both lakes synchronously (ρ = 0.7, p 〈 0.001). Diatom‐inferred mixing depths suggested a coherent shift in both lakes to deeper mixing (an increase of 3 and 6 m) since 1920 (ρ = 0.8), which was correlated with an increase in regional wind speed during the 20th century at the decadal‐scale in Lake Desor and Siskiwit Lake (ρ = 0.6 and 0.4, respectively). In Lake Desor, algal biomass declined as mixing deepened from 1920 to 1980, and then cyanobacteria and cryptophyte pigments increased from 1980 to present, a period of inferred stable and deep mixing. Algal pigment concentrations in Siskiwit Lake were unchanged as mixing depth deepened. Although changes in wind speed altered lake physical structure similarly, the ecological consequences of these changes differed between lakes and were most likely influenced by lake‐specific variability in nutrient and light availability.
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  • 45
    Publication Date: 2019
    Description: Abstract The decline in living coral since the 1970s has conspicuously slowed reef construction on a global scale, but the related process of reef erosion is less visible and not often quantified. Here, we present new data on the constructional and deconstructional sides of the carbonate‐budget equation in the Florida Keys, U.S.A. We documented Orbicella spp. calcification rates at four offshore reefs and quantified decadal‐scale rates of Orbicella‐reef erosion at a mid‐shore patch reef. Using Orbicella coral heads fitted with permanent markers in 1998, we measured reef‐elevation loss at 28 stations over 17.3 yr to estimate a mean erosion rate of −5.5 (± 3.2, SD) mm yr−1. This loss equates to an erosion rate of −8.2 (± 4.8, SD) kg m−2 yr−1 on dead Orbicella colonies, or −6.6 kg m−2 yr−1 when adjusted reef‐wide. Calculating net carbonate production using a census‐based approach on the same patch reef in 2017, we estimated a reef‐wide bioerosion rate of −1.9 (± 2.0, SD) kg m−2 yr−1, and a net carbonate production rate of 0.5 (± 0.3, SD) kg m−2 yr−1. Substituting the erosion rate we estimated with the markers would suggest that net carbonate production at this patch reef was lower and negative, −4.2 kg m−2 yr−1. This divergence could be a function of high erosion rates measured on the tops of Orbicella colonies, which may be preferentially targeted by parrotfish. Nonetheless, our study suggests the need for new field data to improve estimates of reef‐structure persistence as coral reefs continue to degrade.
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  • 46
    Publication Date: 2019
    Description: Abstract Methane (CH4), a potent greenhouse gas, is produced in and emitted from lakes at globally significant rates. The drivers controlling the proportion of produced CH4 that will reach the atmosphere, however, are still not well understood. We sampled a small eutrophic lake (Soppensee, Switzerland) in 2016–2017 for CH4 concentrations profiles and emissions, combined with water column hydrodynamics to investigate the fate of CH4 produced in hypolimnetic sediments. Using a mass balance approach for the periods between April and October of both years, net CH4 production rates in hypolimnetic sediments ranged between 11.4 and 17.7 mmol m−2 d−1, of which 66–88% was stored in the hypolimnion, 13–27% was diffused to the epilimnion, and 6–7% left the sediments via ebullition. Combining these results with a process‐based model we show that water column turbulent diffusivity (K z) had a major influence on the fate of produced CH4 in the sediments, where higher K z values potentially lead to greater proportion being oxidized and lower K z lead to a greater proportion being stored. During fall when the water column mixes, we found that a greater proportion of stored CH4 is emitted if the lake mixes rapidly, whereas a greater proportion will be oxidized if the water column mixes more gradually. This work highlights the central role of lake hydrodynamics in regulating CH4 dynamics and further suggests the potential for CH4 production and emissions to be sensitive to climate‐driven alterations in lake mixing regimes and stratification.
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  • 47
    Publication Date: 2019
    Description: Abstract Models of marine biogeochemistry capture the effects of temperature on phytoplankton growth via the monotonic, exponential Eppley coefficient, without considering the physiological or evolutionary processes that underpin this emergent, across‐species temperature response. Here, we investigated both the within‐ and across‐species temperature dependence of growth rate for 18 species of marine phytoplankton. We found that the temperature dependence of growth rate derived across species was lower than the average temperature response within species. This finding supports a “partial compensation” model of thermal adaptation and suggests that adaptation can partially compensate for the underlying thermodynamic effects of temperature on physiological rates observed within species. We also found that thermal tolerance traits (e.g. the optimum temperature for growth) systematically covaried with a host of key functional traits (e.g. cell size, elemental composition). Consequently, turnover in species composition in a warmer ocean, linked to interspecific variability in thermal tolerance traits, could be associated with major shifts in the functional trait composition of marine phytoplankton communities with far reaching implications for ecosystem functioning.
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  • 48
    Publication Date: 2019
    Description: Abstract Small water systems are important hotspots of greenhouse gas (GHG) emission, but estimates are poorly constrained as data are scarce. Small ponds are often constructed in urban areas, where they receive large amounts of nutrients and therefore tend to be highly productive. Here, we investigated GHG emissions, seasonal and diel variation, and net ecosystem production (NEP) from an urban pond. In monthly 24‐h field campaigns during 11 months, diffusive water–atmosphere methane (CH4) and carbon dioxide (CO2) fluxes and CH4 ebullition and oxidation were quantified. With oxygen (O2) measurements, NEP was assessed. The pond was a net GHG source the entire year, with an emission of 3.4 kg CO2 eq m−2 yr−1. The dominant GHG emission pathway was CH4 ebullition (bubble flux, 50%), followed by diffusive emissions of CO2 (38%) and CH4 (12%). Sediment CH4 release was primarily driven by temperature and especially ebullition increased exponentially above a temperature threshold of 15°C. The pond's atmospheric CO2 exchange was not related to NEP or temperature but likely to a high allochthonous carbon (C) input via runoff and anaerobic mineralization of C. We expect urban ponds to show a large increase in GHG emission with increasing temperature, which should be considered carefully when constructing ponds in urban areas. Emissions may partly be counteracted by pond management focusing on a reduction of nutrient and organic matter input.
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  • 49
    Publication Date: 2019
    Description: Abstract Ocean warming and the increased prevalence of coral bleaching events threaten coral reefs. However, the biology of corals during and following bleaching events under field conditions is poorly understood. We examined bleaching and postbleaching recovery in Montipora capitata and Porites compressa corals that either bleached or did not bleach during a 2014 bleaching event at three reef locations in Kāne‘ohe Bay, O‘ahu, Hawai‘i. We measured changes in chlorophylls, tissue biomass, and nutritional plasticity using stable isotopes (δ13C, δ15N). Coral traits showed significant variation among periods, sites, bleaching conditions, and their interactions. Bleached colonies of both species had lower chlorophyll and total biomass, and while M. capitata chlorophyll and biomass recovered 3 months later, P. compressa chlorophyll recovery was location dependent and total biomass of previously bleached colonies remained low. Biomass energy reserves were not affected by bleaching, instead M. capitata proteins and P. compressa biomass energy and lipids declined over time and P. compressa lipids were site specific during bleaching recovery. Stable isotope analyses did not indicate increased heterotrophic nutrition in bleached colonies of either species, during or after thermal stress. Instead, mass balance calculations revealed that variations in δ13C values reflect biomass compositional change (i.e., protein : lipid : carbohydrate ratios). Observed δ15N values reflected spatiotemporal variability in nitrogen sources in both species and bleaching effects on symbiont nitrogen demand in P. compressa. These results highlight the dynamic responses of corals to natural bleaching and recovery and identify the need to consider the influence of biomass composition in the interpretation of isotopic values in corals.
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  • 50
    Publication Date: 2019
    Description: Abstract Mesophotic reef corals remain largely unexplored in terms of the genetic adaptations and physiological mechanisms to acquire, allocate, and use energy for survival and reproduction. In the Hawaiian Archipelago, the Leptoseris species complex form the most spatially extensive mesophotic coral ecosystem known and provide habitat for a unique community. To study how the ecophysiology of Leptoseris species relates to symbiont–host specialization and understand the mechanisms responsible for coral energy acquisition in extreme low light environments, we examined Symbiodinium (endosymbiotic dinoflagellate) photobiological characteristics and the lipids and isotopic signatures from Symbiodinium and coral hosts over a depth‐dependent light gradient (55–7 μmol photons m−2 s−1, 60–132 m). Clear performance differences demonstrate different photoadaptation and photoacclimatization across this genus. Our results also show that flexibility in photoacclimatization depends primarily on Symbiodinium type. Colonies harboring Symbiodinium sp. COI‐2 showed significant increases in photosynthetic pigment content with increasing depth, whereas colonies harboring Symbiodinium spp. COI‐1 and COI‐3 showed variability in pigment composition, yield measurements for photosystem II, as well as size and density of Symbiodinium cells. Despite remarkable differences in photosynthetic adaptive strategies, there were no significant differences among lipids of Leptoseris species with depth. Finally, isotopic signatures of both host and Symbiodinium changed with depth, indicating that coral colonies acquired energy from different sources depending on depth. This study highlights the complexity in physiological adaptations within this symbiosis and the different strategies used by closely related mesophotic species to diversify energy acquisition and to successfully establish and compete in extreme light‐limited environments.
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  • 51
    Publication Date: 2019
    Description: Abstract The subterranean flow of water through sand barriers between coastal lagoons and the sea, driven by a positive hydraulic gradient, is a net new pathway for solute transfer to the sea. On the sea side of sand barriers, seawater circulation in the swash‐zone generates a flux of recycled and new solutes. The significance and temporal variability of these vectors to the French Mediterranean Sea is unknown, despite lagoons constituting ~ 50% of the coastline. A one‐dimensional 224Raex/223Ra reactive‐transport model was used to quantify water flow between a coastal lagoon (La Palme) and the sea over a 6‐month period. Horizontal flow between the lagoon and sea decreased from ~ 85 cm d−1 during May 2017 (0.3 m3 d−1 m−1 of shoreline) to ~ 20 cm d−1 in July and was negligible in the summer months thereafter due to a decreasing hydraulic gradient. Seawater circulation in the swash‐zone varied from 10 to 52 cm d−1 (0.4–2.1 m3 d−1 m−1), driven by short‐term changes in the prevailing wind and wave regimes. Both flow paths supply minor dissolved silica fluxes on the order of ~ 3–10 mmol Si d−1 m−1. Lagoon–sea water exchange supplies a net dissolved inorganic carbon (DIC) flux (320–1100 mmol C d−1 m−1) two orders of magnitude greater than seawater circulation and may impact coastal ocean acidification. The subterranean flow of water through sand barriers represents a significant source of new DIC, and potentially other solutes, to the Mediterranean Sea during high lagoon water‐level periods and should be considered in seasonal element budgets.
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  • 52
    Publication Date: 2019
    Description: Abstract Mixotrophic oligotrich ciliates use plastids sequestered from algal prey to acquire energy and metabolic products from photosynthesis. We isolated mixotrophic oligotrichs from coastal waters off Massachusetts (MA) and California (CA), as well as from two freshwater ponds in MA, and identified associated plastid 23S rRNA genes. Ciliates were identified using a combination of microscopy and 18S rRNA phylogeny, and included Laboea strobila and various Pseudotontonia, Spirotontonia, and Strombidium species from marine waters, and Limnostrombidium viride from freshwater. Overall, nearly half of all plastid sequences recovered from ciliates were haptophytes, followed by 15–20% for stramenopiles and chlorophytes, and 〈 10% originating from cryptophyte algae. No plastid sequences were from dinoflagellates. Cells of Strombidium ‘biarmatum’ collected from coastal MA in spring and fall possessed mostly Micromonas plastids, but during spring also possessed cryptophyte sequences. During spring, L. strobila were found to have a mix of chlorophyte, cryptophyte, haptophyte, and stramenopile sequences, while a co‐occurring Strombidium sp. had mostly chlorophyte and haptophyte sequences. Mixotrophic Pseudotontonia and Spirotontonia spp. were sampled during summer from coastal MA and in Monterey Bay, CA, and cells from both populations were dominated (〉 70%) by haptophyte plastids of similar phylogenetic origin. L. viride were also evaluated from two freshwater ponds and possessed mostly Chrysochromulina sp. (haptophyte) and synurid (stramenopile) sequences. These results are the first survey of the genetic diversity of plastids associated with pelagic mixotrophic oligotrich ciliates and suggest that some species may selectively retain plastids from certain algal groups, while others appear to be generalists.
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  • 53
    Publication Date: 2019
    Description: Abstract Internal waves can influence water properties in coastal ecosystems through the shoreward transport and mixing of subthermocline water into the nearshore region. In June 2014, a field experiment was conducted at Dongsha Atoll in the northern South China Sea to study the impact of internal waves on a coral reef. Instrumentation included a distributed temperature sensing system, which resolved spatially and temporally continuous temperature measurements over a 4‐km cross‐reef section from the lagoon to 50‐m depth on the fore reef. Our observations show that during summer, internal waves shoaling on the shallow atoll regularly transport cold, nutrient‐rich water shoreward, altering near‐surface water properties on the fore reef. This water is transported shoreward of the reef crest by tides, breaking surface waves and wind‐driven flow, where it significantly alters the water temperature and nutrient concentrations on the reef flat. We find that without internal wave forcing on the fore reef, temperatures on the reef flat could be up to 2.0°C ± 0.2°C warmer. Additionally, we estimate a change in degree heating weeks of 0.7°C‐weeks warmer without internal waves, which significantly increases the probability of a more severe bleaching event occurring at Dongsha Atoll. Furthermore, using nutrient samples collected on the fore reef during the study, we estimated that instantaneous onshore nitrate flux is about four‐fold higher with internal waves than without internal waves. This work highlights the importance of internal waves as a physical mechanism shaping the nearshore environment, and likely supporting resilience of the reef.
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  • 54
    Publication Date: 2019
    Description: Abstract We determined the gross and net primary production (GPP and NPP) for the total community and the 〈 10 μm size fraction, the net release of dissolved organic carbon (DOC), and the microbial respiration in the Baltic Sea during the spring bloom. Samples (n = 126) were taken from the surface (3 m depth) covering most subbasins and different phases of the bloom, defined by the inorganic nutrient and Chlorophyll a (Chl a) concentrations. During the course of the bloom, the NPP rate (i.e., growth rate) decreased from 0.34 d−1 ± 0.03 (SE) to 0.15 d−1 ± 0.02 (SE), the contribution of the 〈 10 μm fraction increased from 14% ± 2.5 (SE) to 47% ± 4.0 (SE) and the percent extracellular release (PER) increased from 3.8% ± 0.7 (SE) to 8.9% ± 1.5 (SE). The assimilation number, was on average 0.13 mol C (g Chl a)−1 h−1 ± 0.01 (SE), and the average GPP:NPP rate was 1.25. The respiration increased with growth rate and was 21% of the GPP rate. The net release of DOC was relatively constant over the bloom phases, with increasing PER compensating for the reduction in biomass, and estimated to 24–36 μmol DOC L−1 during the whole spring bloom period in all subbasins except in the Bay of Bothnia where it was 75% lower. The assimilation number was surprisingly stable, suggesting it is uncoupled from the inorganic nutrient concentration, likely a reflection of physiological acclimation and changing phytoplankton community.
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  • 55
    Publication Date: 2019
    Description: Abstract Abyssal polymetallic nodule fields constitute an unusual deep‐sea habitat. The mix of soft sediment and the hard substratum provided by nodules increases the complexity of these environments. Hard substrata typically support a very distinct fauna to that of seabed sediments, and its presence can play a major role in the structuring of benthic assemblages. We assessed the influence of seafloor nodule cover on the megabenthos of a marine conservation area (area of particular environmental interest 6) in the Clarion Clipperton Zone (3950–4250 m water depth) using extensive photographic surveys from an autonomous underwater vehicle. Variations in nodule cover (1–20%) appeared to exert statistically significant differences in faunal standing stocks, some biological diversity attributes, faunal composition, functional group composition, and the distribution of individual species. The standing stock of both the metazoan fauna and the giant protists (xenophyophores) doubled with a very modest initial increase in nodule cover (from 1% to 3%). Perhaps contrary to expectation, we detected little if any substantive variation in biological diversity along the nodule cover gradient. Faunal composition varied continuously along the nodule cover gradient. We discuss these results in the context of potential seabed‐mining operations and the associated sustainable management and conservation plans. We note in particular that successful conservation actions will likely require the preservation of areas comprising the full range of nodule cover and not just the low cover areas that are least attractive to mining.
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  • 56
    Publication Date: 2019
    Description: Abstract Understanding how gelatinous zooplankton communities are structured by local hydrography and physical forcing has important implications for fisheries and higher trophic predators. Although a large body of research has described how fronts, hydrographic boundaries, and different water masses (e.g., mixed vs. stratified) influence phytoplankton and zooplankton communities, comparatively few studies have investigated their influence on gelatinous zooplankton communities. In July 2015, 49 plankton samples were collected from 50 m depth to the surface, across five transects in the Celtic Sea, of which, four crossed the Celtic Sea Front. Two distinct gelatinous communities were found in this dynamic shelf sea: a cold water community in the cooler mixed water that mainly contained neritic taxa and a warm water community in the warmer stratified water that contained a mixture of neritic and oceanic taxa. The gelatinous biomass was 40% greater in the warm water community (∼ 2 mg C m−3) compared with the cold water community (∼ 1.3 mg C m−3). The warm water community was dominated by Aglantha digitale, Lizzia blondina, and Nanomia bijuga, whereas the cold water community was dominated by Clytia hemisphaerica and ctenophores. Physonect siphonophores contributed 〉 36% to the gelatinous biomass in the warm water community, and their widespread distribution suggests they are ecologically more important than previously thought. A distinct oceanic influence was also recorded in the wider warm water zooplankton community, accounting for a ∼ 20 mg C m−3 increase in biomass in that region.
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  • 57
    Publication Date: 2019
    Description: Abstract The boreal copepod Calanus finmarchicus accumulates lipid reserves during summer feeding in surface ocean waters, which enable it to stay at depth and survive famine during overwintering. Respiration of lipids during prolonged overwintering at ocean depths (〉 1000 m in some areas) has been shown to result in a net sequestration of carbon into the deep ocean: the so‐called “lipid pump.” Here, we provide a comprehensive synthesis of the geographic and vertical variations in lipid content of overwintering animals across the Subpolar Eastern North Atlantic and, on the basis of this, we revise the estimates of carbon sequestration. Wax ester content ranged from 40 to 190 μg individual−1 at 〉 250 m depths, with highest concentrations in the coldest (〈 0°C) waters at 400–600 m depth at the slope east of Faroe Islands and east of Greenland and lowest in the warmer (〉 4°C) Irminger Sea and Rockall Basin. Our new analysis results in about 44% higher estimates of carbon sequestration at up to 11.5 g C m−2.
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  • 58
    Publication Date: 2019
    Description: Abstract For benthic marine invertebrates, recruitment strongly influences the composition and abundance of resulting communities. We present the results of a long‐term (1999–2017) colonization experiment at the Long‐Term Ecological Research observatory HAUSGARTEN in the Fram Strait (Arctic Ocean, 79°N, 04°E, 2500 m water depth). Recruitment panels were constructed from plastic and brick and deployed attached to a metal frame in 1999. The experiment was monitored using a remotely operated vehicle in 2003 and 2011 and recovered in 2017. Recruitment was very low, with only foraminiferans being visible after 4 yr (2003) and one metazoan species, the hydroid Halisiphonia arctica, being visible on the panels after 12 yr (2011). After 18 yr underwater, panels were colonized by 13 metazoan species as well as calcareous and agglutinating foraminiferans. Recruitment was higher on brick panels than on plastic, but while some species were more common on panels at higher altitude (H. arctica and the crinoid Bathycrinus carpenterii), others were more common on panels closer to the seafloor (serpulid polychaetes) or on panels in line with the predominant bottom current (small round white sponges). The most common species recruiting to our panels can be described as opportunistic. Meanwhile, large hexactinellid sponges that are common in natural communities did not recruit to our panels. These results suggest that community assembly in the Arctic deep sea takes much longer than the two decades spanned by this study.
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  • 59
    Publication Date: 2019
    Description: Abstract Bubbles rising through the water column are known to scavenge organic material and microorganisms, and transport them through the air–sea interface after bursting. This mechanism has important implications for air–sea exchange processes. However, little is known about how bubbles influence the chemical and biological properties of the sea‐surface microlayer (SML), a gelatinous film at the air–sea interface. We used floating mesocosms in the coastal Baltic Sea and a laboratory tank filled with seawater from the North Sea to study the effect of bubbling on the gelatinous nature of the SML. Bubbling was found to always increase concentrations of transparent exopolymer particles (TEP) in the SML. In the field, TEP in the SML already increased after 2 min (53% ± 63%) and 10 min (19% ± 12%) bubbling, respectively. During the tank experiment, TEP enriched in the SML by 312% (± 244%) after 〉 3 h of bubbling. Therefore, bubbling is a highly efficient mechanism for TEP enrichment in the SML. Bubbling caused enrichment and depletion of microbial abundances (prokaryotes, flagellates, eukaryotes) in the SML. However, the incorporation of 3H‐thymidine (i.e., bacterial carbon production) was consistently stimulated after 10 min of bubbling in the field experiment, indicating a bubble‐induced import of unstressed bacteria and fresh organic substrates into the SML. Overall, our results suggest that the gelatinous matrix of the SML is re‐formed within min after disruption by bursting bubbles, and, thus, highlights the importance of biogeochemical interactions within the air–sea interface.
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  • 60
    Publication Date: 2019
    Description: Abstract Deep‐sea environments are the largest ecosystem of the global biosphere and constitute a crucial role in global biogeochemical cycles. We integrated biogeochemical and molecular ecological approaches to investigate microbial activity and diversity, with the goal of elucidating pathways and regulations of methane cycling and low molecular weight (LMW) compounds metabolism in different deep‐sea sediments of the South China Sea. We found that methanogenesis, anaerobic oxidation of methane, and sulfate reduction occurred concurrently with low rates in surface sediments of the Haima area (~ 50 cm push cores) and in subsurface sediments of the Shenhu area (~ 8 m piston core). In the presence of sulfate, methanogenesis was fueled by methylotrophic substrates, in agreement with thermodynamic calculations as well as the detection of the methylotrophic methanogenic genus Methanococcoides. Higher oxidation rates of LMW compounds than methanogenesis rates, suggested acetate, and to a lesser extent, methanol and methylamine, were predominantly utilized as an energy source by nonmethanogenic microorganisms (e.g., sulfate‐reducing bacteria). Diverse methanotrophic archaea (e.g., ANME‐1a/b and ANME‐2a/b) and sulfate‐reducing bacteria (e.g., Desulfarculaceae and Desulfobacteraceae) were observed and the abundance of mcrA and dsrA genes varied over depth and between sites. Dominant archaeal groups, such as Bathyarchaeota, Thermoplasmatale, Woesearchaeota, Lokiarchaeota, were consistently detected at both areas. Multivariate statistical analysis demonstrated sulfate was the most relevant environmental variable that correlated with the archaeal community composition. These results suggested that the presence of sulfate controlled methane cycling and LMW carbon metabolism pathways, and also affected the composition of the microbial community.
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  • 61
    Publication Date: 2019
    Description: Abstract Hypoxic conditions continue to be an environmental concern in lakes, including those with shallow and well‐mixed basins, such as the western basin of Lake Erie, in which hypoxia is not anticipated. We investigated the dynamics and causes of hypoxia using field measurements at two locations in the western basin during the late summer of 2017. Two hypoxic events (dissolved oxygen [DO] concentrations 〈 2 mg L−1) were recorded that were caused by upwelling of hypolimnetic water from the central basin of the lake following winds from the south and southwest. In this case, instantaneous stratification occurred when cool central basin water (i.e., 15.7°C) intruded as a 2.5‐m‐thick layer above the bottom under the warm western basin waters (i.e., 23.9°C). A third hypoxic event, which was associated with more typical thermal stratification from atmospheric warming, occurred during a calm and warm period near the end of the deployment. In this case, we observed a continuous decline in hypolimnetic DO from ≈ 8 to 〈 5 mg L−1, which likely declined to 〈 2 mg L−1 in 14 d using a one‐dimensional model. Interbasin exchange flows generated instantaneous hypoxia multiple times within a year and were the dominate cause (63% of 11 cases) of hypoxia identified during August fishing trawls in the study area over the past 30 yr. Results of this work should help with the prediction and understanding of hypoxia in lakes with multiple basins, which will be informative for water quality and fisheries management.
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  • 62
    Publication Date: 2019
    Description: Abstract Wetlands represent the largest natural source of methane; however, very few studies have simultaneously quantified the three main atmospheric flux pathways (i.e., diffusive, ebullition, and plant‐mediated). Unlike better‐studied northern hemisphere systems, many Australian subtropical wetlands undergo extreme wet/dry oscillations, which may strongly impact methane dynamics. We assessed diurnal methane emissions of multiple pathways during three distinct seasonal events within an Australian freshwater wetland. Six‐fold higher methane emissions occurred during summer compared to autumn floods (which followed an extensive dry‐period) and winter/cool conditions. Over three seasons, diffusion represented the highest average areal fluxes (25.9 ± 73.2 mmol m−2 d−1) but were within range of fluxes through water lily aerenchyma (20.8 ± 41.5 mmol m−2 d−1). Average ebullition rates were 5.5 ± 9.7 mmol m−2 d−1. Water column CH4 displayed high spatiotemporal variability, ranging from 55.0 to 253.5 μmol L−1. Time series δ13C–CH4 isotope measurements revealed an oxidation fraction of ~ 15% at night‐time and ~ 36% during day‐time, and night‐time diffusive fluxes were consistently ~ three‐fold higher than day‐time fluxes. By aggregating seasons and weighting for changes in lily coverage, plant‐mediated fluxes accounted for ~ 59% of the annual methane emissions, whereas ebullition and diffusion each accounted for ~ 20%. The up‐scaled annual area‐weighted wetland methane flux (combined pathways) was 27.3 ± 36.7 mmol m−2 d−1. We contend that water lilies (Nymphaea sp.) are the significant carbon source, mediator, and conduit for methane fluxes in this system, and the extremely large seasonal variability of methane emissions reflect dynamic redox oscillations driven by oscillating wet and dry conditions.
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  • 63
    Publication Date: 2019
    Description: Abstract Critical gaps in knowledge hinder our ability to infer spatiotemporal dynamics in pelagic ecosystems. In particular, environmental changes affecting key copepod species while overwintering in deep waters are still not well understood. Here, we analyzed an 11 yr time series (2000–2010) of winter (January/February) samplings in the Lofoten Basin to characterize the spatial distribution of Calanus finmarchicus overwintering abundances and to infer their long‐term temporal trends. The spatial structure of populations at depths between 700 and 900 m corresponded to mesoscale aggregations consistent with eddies in the region. Over time, increased abundances of copepods and of one of its main predators, the herring (Clupea harengus), matched a negative trend in the 7 yr lagged winter NAO index. However, this progressive climatic shift did not affect surface conditions in the region or southward but corresponded to an increase in salinity and a deepening of the vertical extension of the Atlantic Water layer. We hypothesized that this change in salinity structure across the water column increased the density contrast between copepods and ambient water masses and facilitates the ascent rates during seasonal vertical migration. We suggest a step‐wise mechanism from NAO large‐scale forcing to copepod and herring populations mediated by hydrographical changes in intermediate water masses to explain the observed trends in abundances. Thus, large‐scale, lagged climatic patterns affecting overwintering copepods might scale up to succesive trophic levels in the pelagic ecosystem.
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  • 64
    Publication Date: 2019
    Description: Abstract Recent work has suggested that the oxygen deficient zone (ODZ) and overlying surface waters of the eastern tropical South Pacific (ETSP) is a potential niche for dinitrogen (N2) fixation. Rates of dinitrogen fixation were measured in the ETSP above and within the ODZ in July 2013 using a modified 15N2 bubble addition method, wherein a bubble was added, mixed, and then removed, and the isotopic enrichment of the dissolved N2 was measured directly for each incubation. N2 fixation rates in the euphotic zone ranged from below detection to 3.9 nmol L−1 d−1 and were below detection at all depths surveyed within the ODZ. Depth‐integrated rates ranged from below detection to 289.7 μmol m−2 d−1. DNA and RNA of diverse nifH genes were detected at both surface waters and in the ODZ. However, the results of this study suggest that N2 fixation rates were low and contribute little to N cycling in the ETSP.
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  • 65
    Publication Date: 2019
    Description: Abstract Oceanographers have spent decades developing annual indices that summarize physical conditions in marine ecosystems. Examples include the Pacific Decadal Oscillation, summarizing annual variation in the location of warm waters in the North Pacific, and cold‐pool extent (CPE), summarizing the area with cold near‐bottom waters in the eastern Bering Sea. However, these indices are rarely included in the species distribution models that are used to identify and forecast distribution shifts under future climate scenarios. I therefore review three interpretations of spatially varying coefficient models, explain how they can be used to estimate spatial patterns of population density associated with oceanographic indices, and add this option to the multivariate spatiotemporal model VAST. I then use a case study involving bottom trawl data for 17 fish and decapod species in the eastern Bering Sea 1982–2017 to answer: does a spatially varying coefficient model for CPE explain variation in spatial distribution for species in this region? And (2) does a spatially varying effect of CPE remain substantial even when local temperature is also included as a covariate? Results show that CPE and local bottom temperature are both identified as parsimonious by Akaike Information Criterion for 13 of 17 species, jointly explain nearly 9%–14% of spatiotemporal variation on average, and CPE does explain variation in excess of local temperature alone. I therefore conclude that spatially varying coefficient models are a useful way to assimilate oceanographic indices within species distribution models, and hypothesize that these will be useful to account for decadal‐scale variability within multidecadal forecasts of distribution shift.
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  • 66
    Publication Date: 2019
    Description: Abstract Seagrass meadows play an important role in “blue carbon” sequestration and storage, but their dynamic metabolism is not fully understood. In a dense Zostera marina meadow, we measured benthic O2 fluxes by aquatic eddy covariance, water column concentrations of O2, and partial pressures of CO2 (pCO2) over 21 full days during peak growing season in April and June. Seagrass metabolism, derived from the O2 flux, varied markedly between the 2 months as biomass accumulated and water temperature increased from 16°C to 28°C, triggering a twofold increase in respiration and a trophic shift of the seagrass meadow from being a carbon sink to a carbon source. Seagrass metabolism was the major driver of diurnal fluctuations in water column O2 concentration and pCO2, ranging from 173 to 377 μmol L−1 and 193 to 859 ppmv, respectively. This 4.5‐fold variation in pCO2 was observed despite buffering by the carbonate system. Hysteresis in diurnal water column pCO2 vs. O2 concentration was attributed to storage of O2 and CO2 in seagrass tissue, air–water exchange of O2 and CO2, and CO2 storage in surface sediment. There was a ~ 1:1 mol‐to‐mol stoichiometric relationship between diurnal fluctuations in concentrations of O2 and dissolved inorganic carbon. Our measurements showed no stimulation of photosynthesis at high CO2 and low O2 concentrations, even though CO2 reached levels used in IPCC ocean acidification scenarios. This field study does not support the notion that seagrass meadows may be “winners” in future oceans with elevated CO2 concentrations and more frequent temperature extremes.
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  • 67
    Publication Date: 2019
    Description: Abstract Although it is well established that microalgae take up metals and other contaminants from water and it has been suggested that algae may play a significant role in mobilizing sediment bound contaminants, there has been little research on the uptake of sediment‐associated contaminants by microalgae. This may be important for microphytobenthos, which is closely associated with sediments. We report on laboratory experiments investigating the uptake of cadmium (Cd) from sediment and water by Cylindrotheca closterium over 96 h. The role of microalgae in the partitioning of Cd between sediment and water was also investigated. While concentrations do not typically represent those in the natural environment, we showed C. closterium takes up Cd from sediment, and concentration in microalgae is affected by sediment organic matter content. Cylindrotheca closterium influenced Cd movement between sediment and water: transfer from water to sediment was slowed, while transfer from sediment to overlying water (all treatments) and interstitial water (unprocessed sediment treatments) was increased. This is the first article to describe Cd uptake by diatoms from intertidal sediment in relation to sediment properties and mobilization of Cd from sediment in the presence of diatoms. Microalgae may serve as a pathway for sediment‐associated metals to enter into aquatic food webs, and their presence appears to increase metal concentrations in water potentially making any mobilized metals available for uptake by other species. Given this and their importance as the basis of the food chain, there may be implications for environmental and human health and potential impacts for the biological stability of the sediment.
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  • 68
    Publication Date: 2019
    Description: Abstract An extensive data set of measurements within the Chukchi and Beaufort Seas is used to characterize the optical properties of seawater associated with different phytoplankton communities. Hierarchical cluster analysis of diagnostic pigment concentrations partitioned stations into four distinct surface phytoplankton communities based on taxonomic composition and average cell size. Concurrent optical measurements of spectral absorption and backscattering coefficients and remote‐sensing reflectance were used to characterize the magnitudes and spectral shapes of seawater optical properties associated with each phytoplankton assemblage. The results demonstrate measurable differences among communities in the average spectral shapes of the phytoplankton absorption coefficient. Similar or smaller differences were also observed in the spectral shapes of nonphytoplankton absorption coefficients and the particulate backscattering coefficient. Phytoplankton on average, however, contributed only 25% or less to the total absorption coefficient of seawater. Our analyses indicate that the interplay between the magnitudes and relative contributions of all optically significant constituents generally dampens any influence of varying phytoplankton absorption spectral shapes on the total absorption coefficient, yet there is still a marked discrimination observed in the spectral shape of the ratio of the total backscattering to total absorption coefficient and remote‐sensing reflectance among the phytoplankton assemblages. These spectral variations arise mainly from differences in the bio‐optical environment in which specific communities were found, as opposed to differences in the spectral shapes of phytoplankton optical properties per se. These results suggest potential approaches for the development of algorithms to assess phytoplankton community composition from measurements of seawater optical properties in western Arctic waters.
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  • 69
    Publication Date: 2019
    Description: Abstract Survivability of diapausing (cryptobiotic) life stages over time in nature, beyond maximum observed time for viability, is not well understood. Because these life stages are an adaptation to overcome harsh conditions, survivability over time is assumed to be high. Brine shrimp (Artemia franciscana) diapausing eggs (cysts) permit overwinter survival to initiate the population each spring. An experiment was designed to examine overwinter survival of brine shrimp cysts for 17 yr in Great Salt Lake (Utah, U.S.A.). Initial hatchability entering the winter (17.8–78.8%) and overwinter survivability (9.9–65.9%) of cysts varied dramatically among years. Better maternal nutrition increased initial hatchability. Overwinter survival of cysts decreased in part because some cysts hatch when it is too cold for the hatchlings to feed (0.8–39.4% among years), so they starve. However, overwinter cyst survival decreases the most with warmer waters in winter, and with better maternal nutrition, as both factors lead to diapause being easier to break. Annual variation in initial hatchability and survival is shown to be important to Great Salt Lake brine shrimp populations. Therefore, cryptobiotic life‐stage ecology needs to be better understood, as these life stages may have highly variable hatchability and survivability with normal environmental stresses.
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  • 70
    Publication Date: 2019
    Description: Abstract Essential polyunsaturated fatty acids (PUFAs) have been recognized as a crucial factor that determines the trophic transfer efficiency in plankton communities. As many animals cannot synthesize the classes of ω3‐ and ω6‐PUFAs, the dietary availability of these PUFAs can constrain the fitness of freshwater zooplankton such as Daphnia spp. In particular, eicosapentaenoic acid (EPA, 20:5ω3) is considered to be a crucial determinant of the transfer of biomass at the freshwater plant‐herbivore interface. In contrast to ω3‐PUFAs, the group of ω6‐PUFAs has previously been considered to be of less ecological relevance, although the potential role of the ω6‐PUFA arachidonic acid (ARA, 20:4ω6) remains controversial. To investigate its potential role, we conducted dose‐response growth experiments with two Daphnia species, D. pulex and D. magna, supplemented with EPA or ARA, which allowed us to calculate EPA and ARA saturation thresholds for growth and reproduction of both Daphnia species. Our results provide evidence that not only the availability of ω3‐PUFAs, but also the availability of a ω6‐PUFA, namely ARA, can limit both the growth and reproduction of Daphnia spp. to an equal extent. The saturation thresholds for growth and reproduction were consistently, but not significantly, higher for EPA than for ARA in both Daphnia species. As shifts in phytoplankton community composition might result in environmental fluctuations in the dietary availability of ω3‐ and ω6‐PUFAs, our findings present a significant step in understanding the consequences of the ongoing global biodiversity loss for trophic transfer efficiency at the phytoplankton‐zooplankton interface.
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  • 71
    Publication Date: 2019
    Description: ABSTRACT The seasonal variation of bacterial production (BP) in a shallow, eutrophic Lake Kasumigaura was clarified from 2012 to 2016. During the studied period, BP fluctuated from 1.9 to 138 μg C L−1 d−1. There were no significant correlations between BP and bacterial abundance in any season, suggesting a strong top‐down regulation on BP throughout the year. On the other hand, BP was also related to bottom‐up regulation factors such as water temperature, phosphorus, and primary production (PP) annually. During winter, BP was positively correlated with chlorophyll a concentration, suggesting that autochthonous substrates were relatively important for BP. Moreover, BP was positively correlated with heterotrophic nanoflagellates, ciliates, and copepods, suggesting higher availability of substrates for BP. In summer, although there was no significant correlation between BP and PP, rainfall amount showed significant negative correlations with both BP and PP, suggesting depressed PP from relatively lower solar irradiance coupled with unfavorable weather conditions that decreased the substrate supply for bacteria. These results suggest that temporal variation of BP was regulated not by allochthonous, but by autochthonous substrates during both the highest (summer) and lowest (winter) productive seasons, even in a shallow, eutrophic lake. PP in autumn was approximately half that of spring due to lower solar irradiance, although water temperatures during both seasons were similar and nutrient concentrations during autumn were higher. On the other hand, BP in autumn was comparable with that in spring, and the bacterial carbon demand (= BP + bacterial respiration; 1.12 ± 0.79 g C m−2 d−1) was comparable to PP (1.16 ± 0.53 g C m−2 d−1), suggesting the relative importance of higher allochthonous substrates relative to other seasons.
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  • 72
    Publication Date: 2019
    Description: Abstract Coastal megacities deposit significant amounts of carbon (C), nitrogen (N), and pollutants into surrounding waters. In urbanized estuaries, these inputs, including wastewater discharge and surface runoff, can affect biogeochemical cycles, microbial production, and greenhouse gas (GHG) efflux. To better understand estuarine GHG production and its connection to anthropogenic drivers, we quantified carbon dioxide (CO2) and methane (CH4) surface‐water concentrations and efflux in combination with a suite of biogeochemical parameters, including anthropogenic indicators, in the Hudson River Estuary (HRE) and adjacent waters surrounding New York, NY, over a 2‐yr period. The HRE was a source of both CO2 (33 ± 3 mmol CO2 m−2 d−1) and CH4 (177 ± 22 μmol CH4 m−2 d−1) under all measured conditions. Surface‐water salinity, oxygen saturation, fecal indicator bacteria, nitrate concentrations, and temperature best explained the variance in CO2 and CH4 concentrations in multiple regression analyses, producing robust predictive power for both GHGs. Our multifaceted data set demonstrated that CH4 and CO2 surface concentrations are explained in part by enterococci concentrations, a widely used wastewater biological indicator, explicitly linking wastewater inputs to GHG surface concentrations in the HRE. The greatest CO2 and CH4 surface‐water concentrations were found in urban tributaries and embayments, primary wastewater delivery areas throughout the HRE. Estuarine tributaries and embayments have historically received less research attention than midchannel sites, but since these shallow sites may contribute to increased GHG efflux in anthropogenically impacted estuaries, further study is warranted.
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  • 73
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    Wiley
    Publication Date: 2019
    Description: Limnology and Oceanography, Volume 64, Issue 3, Page i-iii, May 2019.
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  • 74
    Publication Date: 2019
    Description: Abstract The model ECO‐MARS3D, successfully applied thus far to coastal ecosystems, has been extended to encompass the Seine estuary up to Poses, at the limit between the river and the estuary. We used updated bathymetric data and thoroughly calibrated the hydrodynamics and the sedimentary dynamics in the turbidity maximum zone (TMZ). Biogeochemical processes related to oxygen were newly implemented, and freshwater phytoplankton and zooplankton groups were added to the existing marine groups. The simulations allowed us to evaluate the filter effect of the estuary with regard to the main nutrients (N, P, and Si). Today, this filter role appears quite limited and variable depending on the hydrology. On average, considering three different hydrological years, the estuary was able to retain (at least temporarily) 19 kt N yr−1, 10 kt Si yr−1, and 0.7 kt P yr−1, amounting to −13%, −11%, and −27% of the total N, Si, and P inputs, respectively. Seasonal differences in the filtering capacity (lower in winter than in summer) were similar between wet and dry years. Nutrient retention was higher in the upstream fluvial estuary than in the TMZ, the former being mostly characterized by uptake, the latter by remineralization. At the coastal zone, the dry year showed greater risk of eutrophication. Despite lower discharge and lower nutrient fluxes, inputs were confined into a shallower layer, close to the coastline, where nutrients were concentrated and allowed phytoplankton to thrive. Differences in the N : P : Si ratios (lower P‐deficit during dry years) could also underpin the larger proliferations, and notably the larger dinoflagellate blooms during dry years.
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  • 75
    Publication Date: 2019
    Description: Abstract Unionid mussels from clear‐water rivers are often found in turbid waters in which their feeding and reproductive efficiency should be impaired. We examined the feeding response of Lampsilis siliquoidea from a clear and turbid river in response to increased concentrations of total suspended solids (TSS) and water velocity in a funnel chamber and a recirculating flow chamber. Four TSS concentrations (0, 5, 20, and 100 mg L−1) and four velocities (0, 0.05, 0.15, and 0.25 m s−1) were used to create 16 experimental conditions corresponding to nine TSS flux (concentration × velocity) levels. TSS flux significantly affected clearance rates (CR); however, the relationship was complex. Increased TSS led to lower CR in mussels from clear and turbid river at all velocities; however, increases in velocity reduced the magnitude of the decline with respect to TSS. Overall, the turbid river mussels were less affected by increased TSS than those from the clear‐water rivers. The mussels from the turbid river also differed anatomically (i.e., greater palp:gill ratio; number of cilia per cirri; number of cirri cm−1; and thickness of palp cilia, and less cilia per unit area of palp) from the clear river animals. It is likely that these anatomical differences allow the mussels to feed more efficiently in turbid water, which explains the observed differences in CR response to TSS. These results demonstrate the importance of multistressor approaches in evaluating aquatic organisms, as well as providing a potential mechanism to explain how mussels thrive in turbid rivers.
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  • 76
    Publication Date: 2019
    Description: Abstract We investigated methane oxidation in the oxygen minimum zone (OMZ) of the eastern tropical North Pacific (ETNP) off central Mexico. Methane concentrations in the anoxic core of the OMZ reached ~ 20 nmol L−1 at off shelf sites and 34 nmol L−1 at a shelf site. Rates of methane oxidation were determined in ship‐board incubations with 3H‐labeled methane at O2 concentrations 0–75 nmol L−1. In vertical profiles at off‐shelf stations, highest rates were found between the secondary nitrite maximum at ~ 130 m and the methane maximum at 300–400 m in the anoxic core. Methane oxidation was inhibited by addition of 1 μmol L−1 oxygen, which, together with the depth distribution, indicated an anaerobic pathway. A coupling to nitrite reduction was further indicated by the inhibitory effect of the nitric oxide scavenger 2‐phenyl‐4,4,5,5‐tetramethylimidazoline‐1‐oxyl‐3‐oxide (PTIO). Metatranscriptomes from the anoxic OMZ core supported the likely involvement of nitrite‐reducing bacteria of the NC10 clade in anaerobic methane oxidation, but also indicated a potential role for nitrate‐reducing euryarchaeotal methane oxidizers (ANME‐2d). Gammaproteobacteria of the Methanococcales were further detected in both 16S rRNA gene amplicons and metatranscriptomes, but the role of these presumed obligately aerobic methane oxidizers in the anoxic OMZ core is unclear. Given available estimates of water residence time, the measured rates and rate constants (up to ~ 1 yr−1) imply that anaerobic methane oxidation is a substantial methane sink in the ETNP OMZ and hence attenuates the emission of methane from this and possibly other OMZs.
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  • 77
    Publication Date: 2019
    Description: Abstract Plankton are an extremely diverse and polyphyletic group, exhibiting a large range in morphological and physiological traits. Here, we apply automated optical techniques, provided by the pulse‐shape recording automated flow cytometer—CytoSense—to investigate trait variability of phytoplankton and plastidic ciliates in Arctic and Atlantic waters of the subpolar North Atlantic. We used the bio‐optical descriptors derived from the CytoSense (light scattering [forward and sideward] and fluorescence [red, yellow/green and orange from chlorophyll a, degraded pigments, and phycobiliproteins, respectively]) and translated them into functional traits to demonstrate ecological trait variability along an environmental gradient. Cell size was the master trait varying in this study, with large photosynthetic microplankton (〉 20 μm in cell diameter), including diatoms as single cells and chains, as well as plastidic ciliates found in Arctic waters, while small‐sized phytoplankton groups, such as the picoeukaryotes (〈 4 μm) and the cyanobacteria Synechococcus were dominant in Atlantic waters. Morphological traits, such as chain/colony formation and structural complexity (i.e., cellular processes, setae, and internal vacuoles), appear to favor buoyancy in highly illuminated and stratified Arctic waters. In Atlantic waters, small cell size and spherical cell shape, in addition to photo‐physiological traits, such as high internal pigmentation, offer chromatic adaptation for survival in the low nutrient and dynamic mixing waters of the Atlantic Ocean. The use of automated techniques that quantify ecological traits holds exciting new opportunities to unravel linkages between the structure and function of plankton communities and marine ecosystems.
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  • 78
    Publication Date: 2019
    Description: Limnology and Oceanography, EarlyView.
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  • 79
    Publication Date: 2019
    Description: Abstract Microbial metabolism is of great importance in affecting the efficiency of biological pump and global carbon cycles. However, the metabolic state of the oligotrophic ocean, the largest biome on Earth, remains contentious. We examined the planktonic and bacterial metabolism using in vitro incubations along the western Pacific boundary during September and October 2016. The integrated gross primary production (GPP) of the photic zone exhibited higher values in the region of 2°–8°N along 130°E and the western Luzon Strait, which is consistent with the regional variability of nutrients in the different ocean provinces. Spatially, the community respiration (CR) was less variable than the GPP and slightly exceeded the GPP at most of the sampling stations. Overall, the in vitro incubation results suggest a prevailing heterotrophic state in this region. A comparison of the metabolic rates from the in vitro incubations with recently published biogeochemical model results in the same region shows that our observed GPP values were close to those predicted by the model, but the measured CR was approximately 30% higher than the modeled values. We also found that most of the in vitro CR estimates were higher than the upper range of the empirical CR estimated from the sum of the contributions of the main trophic groups. Conversely, the estimates of the empirical CR support the rationality of the CR predicted by the biogeochemical model. In general, the results indicate that systematic net heterotrophy is more likely a result of the overestimation of CR measured by the light–dark bottle incubation experiments, although the exact cause of the methodological problem remains unknown.
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  • 80
    Publication Date: 2019
    Description: Abstract Dissolved organic matter (DOM) plays an important role in freshwater biogeochemistry. To investigate the influence of catchment character on the quality and quantity of DOM in freshwaters, 45 sampling sites draining subcatchments of contrasting soil type, hydrology, and land cover within one large upland‐dominated and one large lowland‐dominated catchment were sampled over a 1‐yr period. Dominant land cover in each subcatchment included: arable and horticultural, blanket peatland, coniferous woodland, and improved, unimproved, acid, and calcareous grasslands. The composition of the C, N, and P pool was determined as a function of the inorganic nutrient species (NO3−, NO2−, NH4+, and PO43−) and dissolved organic nutrient (dissolved organic carbon [DOC], dissolved organic nitrogen [DON], and dissolved organic phosphorus [DOP]) concentrations. DOM quality was assessed by calculation of the molar DOC : DON and DOC : DOP ratios and specific ultraviolet absorbance (SUVA254). In catchments with little anthropogenic nutrient inputs, DON and DOP typically composed 〉 80% of the total dissolved nitrogen (TDN) and total dissolved phosphorus (TDP) concentrations. By contrast, in heavily impacted agricultural catchments DON and DOP typically comprised 5–15% of TDN and 10–25% of TDP concentrations. Significant differences in DOC : DON and DOC : DOP ratios were observed between land cover class with significant correlations observed between both the DOC : DON and DOC : DOP molar ratios and SUVA254 (rs = 0.88 and 0.84, respectively). Analysis also demonstrated a significant correlation between soil C : N ratio and instream DOC : DON/DOP (rs = 0.79 and 0.71, respectively). We infer from this that soil properties, specifically the C : N ratio of the soil organic matter pool, has a significant influence on the composition of DOM in streams draining through these landscapes.
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  • 81
    Publication Date: 2019
    Description: Abstract Nanophytoplankton, the key component of algal communities, remains understudied, thus there is a substantial knowledge gap about dynamics of abundance, biovolume, and cell size of specific algae. Here, I studied weekly changes in abundance, biovolume, cell volume, and cell surface to volume (SV) ratio (〉 11,700 cells measured) of specific nanophytoplankton groups using amplicon sequencing and catalyzed reported deposition‐fluorescence in situ hybridization. I applied oligonucleotide probes to study major nanophytoplankton groups: chlorophytes, chrysophytes, pelagophytes, cryptophytes, pedinellids, and haptophytes. I designed three novel probes, two for pedinellid species Apedinella radians and Pseudopedinella elastica, and for a haptophyte genus Haptolina. Chlorophytes were the most abundant group, followed by haptophytes and cryptophytes. Abundance and biovolume of specific groups showed distinct seasonal dynamics and fluctuated up to 100‐fold within a week. Different groups contributed to nanophytoplankton peaks over the season, and this pattern was consistent down to a genus/species level, as shown for cryptophytes, pedinellids, and haptophytes. Inorganic nutrients were the best explanatory variables for abundance and biovolume, but their importance varied for specific groups. Thus, the differences in seasonal dynamics of different algal groups can be explained by temporal niche separation between them. Changes in nanophytoplankton size structure were substantial, and cell volume varied over 104‐fold. However, the size dynamics (variability in cell volume and SV ratio) was lower at genus/species level, indicating changes in nanophytoplankton size structure likely resulted from changes in community composition. Temperature and nutrients best explained the size dynamics, but their explanatory power differed for specific nanophytoplankton groups.
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  • 82
    Publication Date: 2019
    Description: Abstract It is predicted that a diverse array of functional traits in species‐rich assemblages can lead to strong resource partitioning among coexisting species and moderate a wider spectrum of resource use. We compared two benthic communities in an Arctic fjord: a species‐rich community (in an outer basin) and an impoverished community (in a glacially impacted bay) and explored (1) if high species richness was translated into high functional trait richness and (2) if high taxonomic and functional diversity promoted high trophic diversity in terms of resource use (indicated by isotopic niche measures). We documented higher functional trait richness in the outer basin (computed based on traits describing feeding mode, mobility, food source, body size and life habit), but the area occupied by consumers in the δ15N vs. δ13C iso‐space (a proxy for total trophic resource use) did not differ between the two sites. A wide array of functional traits used to acquire food may extend the benthic community trophic niche spatially (where and how animals forage) without impacting the isotopic niche breadth (in this system, mostly reflecting “what animals feed on”) due to the relatively homogenous distribution of isotopic characteristics of detritus pool across vertical scales in marine sediments. Moreover, this trend could indicate that a species‐poor community tends to exploit all the available food items, possibly due to the low food availability for primary consumers in a glacially impacted environment. Communities in glacial bays could therefore be particularly sensitive to future changes in glacial inputs and associated organic matter fluxes.
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  • 83
    Publication Date: 2019
    Description: Abstract Salps are gelatinous planktonic suspension feeders that filter large volumes of water in the food‐dilute open ocean. Their life cycle allows periodic exponential growth and population blooms. Dense swarms of salps have a high grazing impact that can deplete the photic zone of phytoplankton and export huge quantities of organic matter to the deep sea. Previous studies described their feeding manner as mostly nonselective, with larger particles retained at higher efficiencies than small particles. To examine salp diets, we used direct in situ sampling (InEx method) of undisturbed solitary Salpa maxima. Aggregates (“chains”) of Salpa fusiformis and Thalia democratica were studied using in situ incubations. Our findings suggest that in situ feeding rates are higher than previously reported and that cell removal is size independent with ∼ 1 μm picoeukaryotes preferentially removed over both larger eukaryotes and smaller bacteria. The prey : predator size ratios we measured (1 : 104–1 : 105) are an order of magnitude smaller than previously reported values and to the best of our knowledge, are the smallest values reported so far for any planktonic suspension feeders. Despite differences among the three species studied, they had similar prey preferences with no correlation between salp body length and prey size. Our findings shed new light on prey : predator relationships in planktonic systems—in particular, that factors other than size influence filtration efficiency—and suggest that in situ techniques should be devised and applied for the study of suspension feeding in the ocean.
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  • 84
    Publication Date: 2019
    Description: Abstract Observations of radiatively driven convection in deep, ice‐free Lake Superior from a set of moorings and an autonomous glider are used to characterize the spatial and temporal scales of the phenomenon. The moored observations show that instability builds at the surface on scales of hours, water near the bottom of the lake begins warming roughly 6 h after sunup, and the water column homogenizes a few hours after sundown. Glider observations suggest the existence of distinct convective chimneys, which carry warmed water to depth with horizontal scales on the order of tens of meters. Patches of photoquenched phytoplankton coincide with patches of anomalously warm water, providing a secondary tracer of water recently in the euphotic zone, and provide insight into the vertical development of convective chimneys. An analysis of the abundance of convective chimneys is used to estimate the lateral scale of convective cells, which appears to be on the order of 50 m.
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  • 85
    Publication Date: 2019
    Description: Abstract Zooplankton respond to light levels, oceanographic conditions, and other cues through diel vertical migrations (DVMs), which can occur at dawn and dusk. However, unraveling the influence of these drivers is difficult without high‐resolution time series data encompassing multiple events that can alter zooplankton DVM. We address this knowledge gap with an interseasonal study using high‐resolution measurements of zooplankton DVMs on the freshwater‐influenced northern Gulf of Mexico shelf. Sampling encompassed 6 months of acoustic backscatter and vertical velocity profiles at five locations, supplemented with zooplankton taxonomic composition and abundance from in situ imaging, net samples, glider profiles, and remote sensing. Relative backscatter anomalies (RBAs) displayed a daily pattern that changed abruptly at dawn and dusk, with lower daytime (2–15 dB lower) values relative to nighttime. Daily variability intensified from autumn to spring. The DVM pattern changed in structure on shorter temporal scales (days to weeks), associated with factors including onshore and off‐shelf currents, lunar variability, cloud cover, and harmful algal bloom passage. In situ imaging and net observations showed that the most likely acoustically observed migrating zooplankton were chaetognaths, shrimp (performing reverse DVMs), copepods, and ostracods. Shrimp and chaetognath orientations also showed diel variability, with individuals more frequently oriented vertically during the daytime. Daily RBA and vertical velocity anomaly patterns could be caused by reverse DVM to the near‐surface or nocturnal DVM to the near‐bottom (outside the acoustic detection range) or diel changes in organism orientation. Pattern complexities suggest that multiple behaviors are happening and being observed simultaneously.
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  • 86
    Publication Date: 2019
    Description: Abstract We determined the stable nitrogen isotope composition (δ15N values) and body size of taxonomic groups in a zooplankton community in the Cantabrian Sea (southern Bay of Biscay) to explore seasonal and depth (0–2000 m) variations in the size‐based trophic structure and their coupling to the production cycle. The positive linear relationship between δ15N values and log‐transformed body size reflects the dominance of new vs. regenerated production. The slope of the relationship (b) is high during productive periods and low when herbivory declines and the food web is more dependent on recycled production. This variation can be attributed to high δ15N values of the smallest plankton after repetitive cycles of microbial degradation. Downward transport of organic matter after the spring phytoplankton bloom was captured by a steady variation from low values of b at the surface to high values at the bathypelagic zone, where the imprint of the spring production pulse could be detected. Variation in b reveals that the mesopelagic and bathypelagic zooplankton communities are as dynamic as their epipelagic counterparts. This shows the efficiency of δ15N vs. body size relationships to capture fast, transient ecosystem processes without need for lengthy incubations or complex rate measurements.
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  • 87
    Publication Date: 2019
    Description: Abstract During the dry phase of intermittent rivers, diverse particulate organic materials, such as leaf litter or macrophytes, remain on dry riverbeds. Together with riverbed sediments, these organic substrates are exposed to various environmental conditions that can alter their chemical composition, with potential implications for later use by heterotroph consumers when flow is re‐established. Here, we investigate how different environmental conditions during the dry phase alter quantity, composition, and biodegradability of dissolved organic matter (DOM) leached from dry riverbeds. To this end, we simulated the “preconditioning” of various DOM sources during a dry phase of 60 d under conditions mimicking open‐ and closed‐canopy rivers. Over the whole experiment, we produced leachates for measurements of nutrients and dissolved organic carbon (DOC) concentration, DOM characterization by absorbance and fluorescence measurements and ultrahigh‐resolution mass spectrometry, and DOM biodegradability. We found that rain, solar radiation, and its associated heat greatly affected leached DOM quantity, composition, and biodegradability. Under open‐canopy conditions, sporadic rain caused the impoverishment of nutrients and DOC by leaching, whereas intense solar radiation and associated heat resulted in a drop of DOM quality and biodegradability by accelerated humification of DOM. In contrast, the preconditioning of DOM sources under a closed canopy barely affected DOM quality and biodegradability because of the protection from rain, solar radiation, and heat by the forest vegetation. Our results suggest that contrasting environmental conditions during the dry phase in open‐ vs. closed‐canopy intermittent rivers can translate into radically different DOM processing during the early wet phase.
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  • 88
    Publication Date: 2019
    Description: Abstract The geochemical speciation of total mercury (THg) was examined in pre‐1800 Arctic lake sediments to improve understanding of the factors controlling “natural baseline” THg. Solid‐phase binding forms of THg were determined by sequential extraction of dated cores from three lakes in different ecozones (barren tundra, grassy tundra, and boreal forest). Sediment organic matter (OM) was mostly of algal origin. Mercury was highly concentrated in the sediment OM fraction (OM‐Hg), comprising 60–87% of THg, while OM (as total organic carbon) constituted only 0.6–13% of sediment dry weight (DW). OM‐Hg concentrations were equivalent to 159 ± 13 to 776 ± 215 ng Hg g−1 DW in algal OM and were enriched 2–39 times compared to sediment THg, indicating that even small changes in algal OM inputs could significantly alter THg. OM‐Hg explained 76–96% of the variation in THg concentrations over many centuries. Concentrations of S2 carbon (an algal productivity proxy) and OM‐Hg were significantly correlated in two lakes but not in the boreal forest lake possibly because of OM remineralization in its deep water column. Fluxes of S2 carbon, OM‐Hg, and THg were highly correlated in the barren tundra lake but could not be calculated for the other lakes. The results overall indicate that high algal Hg concentrations due to scavenging of available Hg controlled OM‐Hg flux to sediments, thus driving changes in THg concentrations and fluxes. These findings improve our understanding of the long‐term stability of baseline THg in northern lakes under a changing climate, including in the modern era.
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  • 89
    Publication Date: 2019
    Description: Abstract Cell size is broadly applied as a convenient parameterization of ecosystem models and is widely applicable to constrain the activities of organisms spanning large size ranges. However, the size structure of the majority of the marine picoplankton assemblage is narrow and beneath the lower size limit of the empirical allometric relationships established so far (typically 〉1 μm). We applied a fine‐resolution (0.05 μm increments) size fractionation method to estimate the size dependence of metabolic activities of picoplankton populations in the 0.10–1.00 μm size interval within the surface North Pacific Subtropical Gyre microbial assemblage. Group‐specific carbon retained on each filter was quantified by flow cytometric conversion of light scatter to cellular carbon quotas. Median carbon quotas were 25.7, 22.6, and 5.9 fg C cell−1 for populations of the picocyanobacterium Prochlorococcus, high‐scatter heterotrophs, and low‐scatter heterotrophs, respectively. Carbon‐specific rates of primary production as a function of cell size, using the 14C method, and phosphate transport, using 33P radiotracers, resulted in negative power scalings (b) within populations of Prochlorococcus and heterotrophs of b = −1.3 and b = −1.1, respectively. These findings are in contrast to the positive empirical power scaling comprising the broader and larger prokaryote category (b = 0.7) and point to within‐population variability in cell physiology and metabolism for these important microbial groups.
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  • 90
    Publication Date: 2019
    Description: Abstract While the majority of studies use the environment to describe microbial populations, the high diversity of microbes can conversely be used as a resource to understand subtle environmental variability. Here, we used a high‐resolution spatial and temporal analysis of Prochlorococcus sp. in the Eastern Indian Ocean to determine whether ecotypes and microdiverse taxa can be used to identify fine‐scale biogeochemical regimes in this under‐studied region. A total of 246 DNA samples were collected every 4–6 h in April 2016 on GO‐SHIP cruise I09N, which transected gyre, equatorial, and monsoonal ecosystems between Western Australia and the Bay of Bengal. Using amplicon sequencing of the highly variable rpoC1 marker, we found that the region was largely dominated by the Prochlorococcus HL‐II clade. Conserved single nucleotide polymorphisms (SNPs) were used to identify four microdiverse haplotypes, or SNP‐delineated taxa, within the HL‐II clade of Prochlorococcus. The haplotypes showed regional patterns of relative gene count abundance that were significantly correlated with environmental conditions. Additionally, we used nonlinear least squares models to fit the sine wave function to our data and demonstrate that the haplotypes show distinct patterns in relative diel frequency, providing evidence that these microdiverse populations are ecologically and evolutionarily distinct. Overall, we show how the integration of a genomics data set into a biogeochemical framework can reveal a more nuanced understanding of a complex ocean basin.
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  • 91
    Publication Date: 2019
    Description: Abstract Ni is an essential cofactor in NiFe‐uptake hydrogenase, an enzyme regulating H2 metabolism in diazotrophic cyanobacteria, the major H2 producers in the surface ocean globally. Here, we investigated the effect of Ni supply on H2 production and N2 fixation by using a model marine cyanobacterial diazotroph, Cyanothece. By mediating total dissolved Ni concentrations from 100 to 0.03 nmol L−1 in a trace metal‐defined culture medium, we demonstrated that Ni deficiency results in H2 accumulation, coupled with decreasing Ni quotas, growth rates, and occasionally relatively low N2 fixation rates. These results indicate that Ni deficiency limits the growth of the Cyanothece to some extent, considerably decreases H2 uptake by hydrogenase and leads to H2 accumulation and N2 fixation variation in the diazotroph. The findings show that Ni availability is a critical factor on controlling H2 production and N2 fixation in marine diazotrophic cyanobacteria. The information of Ni bioavailability for diazotrophic cyanobacteria is thus essential to evaluate the importance of Ni for H2 cycling and N2 fixation in oceanic surface waters.
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  • 92
    Publication Date: 2019
    Description: Abstract Large internal waves are a ubiquitous feature of many thermally stratified lakes, and result in oscillating baroclinic flows that pump water into and out of deep coastal embayments. In the long, narrow, and deep Kempenfelt Bay of Lake Simcoe, we show that stratification and circulation were coupled, so that movements of the thermocline can effectively flush the embayment much faster than hydraulic residence time from river input alone. Internal currents were driven by long‐period internal waves and resulted in large horizontal excursion lengths of several kilometers, which could drive exchange of embayment waters with the main basin. If the embayments are long, wide, and deep, Coriolis forces also deflect the internal wave to follow the coastline on the right‐hand side in the direction of travel as a Kelvin‐type wave, resulting in a net cyclonic circulation in the embayment. This residual counterclockwise flow further facilitated flushing of Kempenfelt Bay. For the summer of 2015, we estimate that forced and free internal wave dynamics alone resulted in a seasonally averaged flushing timescale as short as 17 ± 6 d for the surface mixed layer, and of 13.5 ± 5 d for the hypolimnetic waters of Kempenfelt Bay. Kempenfelt Bay is representative of many long, deep, and narrow embayments found in the Laurentian Great Lakes and arctic fjords. The exchange processes investigated here are relevant for determining the dynamics of water quality parameters used as indicators to evaluate lake health and fish habitat.
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  • 93
    Publication Date: 2019
    Description: Abstract Aerobic methane production in aquatic ecosystems impacts the global atmospheric budget of methane, but the extent, mechanism, and taxa responsible for producing this greenhouse gas are not fully understood. Lake Bonney (LB), a perennially ice‐covered Antarctic lake, has cold hypersaline waters underlying an oxygenated freshwater layer. We present temporal methane concentration profiles in LB indicating methane production in the oxygenated (〉 200% air saturation) water. Experiments amended with methylphosphonate (MPn) yielded methane generation, suggesting in situ methanogenesis via the carbon‐phosphorus (C‐P) lyase pathway. Enrichment cultures from the lake were used to isolate five bacterial strains capable of generating methane when supplied with MPn as the sole P source. Based on 16S rRNA gene sequencing, the isolates belong to the Proteobacteria (closely related to Marinomonas, Hoeflea, and Marinobacter genera) and Bacteroidetes (Algoriphagus genus). 16S rRNA metagenomic sequencing confirms the presence of these taxa in LB. None of the isolated species were reported to be capable to produce methane. In addition, orthologs of the phosphoenolpyruvate mutase gene (PepM) and methylphosphonate synthase (MPnS), enzymes involved in phosphonate and MPn biosynthesis, were widely spread in the LB shotgun metagenomic libraries; genes related to C‐P lyase pathways (phn gene clusters) were also abundant. 16S rRNA and mcrA genes of anaerobic methanogens were absent in both 16S rRNA and metagenomics libraries. These data reveal that in situ aerobic biological methane production is likely a significant source of methane in LB.
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  • 94
    Publication Date: 2019
    Description: Abstract Exposure of dissolved organic matter (DOM) to sunlight can increase or decrease the fraction that is biodegradable (BDOM), but conceptual models fail to explain this dichotomy. We investigated the effect of sunlight exposure on BDOM, addressing three knowledge gaps: (1) how fractions of DOM overlap in their susceptibility to degradation by sunlight and microbes, (2) how the net effect of sunlight on BDOM changes with photon dose, and (3) how rates of DOM photodegradation and biodegradation compare in a stream. Stream waters were exposed to sunlight, and then fed through bioreactors designed to separate labile and semi‐labile pools within BDOM. The net effects of photodegradation on DOM biodegradability, while generally positive, represented the balance between photochemical production and removal of BDOM that was mediated by photon dose. By using sunlight exposure times representative of sunlight exposures in a headwater stream and bioreactors colonized with natural communities and scaled to whole‐stream dynamics, we were able to relate our laboratory findings to the stream. The impact of sunlight exposure on rates of DOM biodegradation in streams was calculated using rates of light absorption by chromophoric DOM, apparent quantum yields for photomineralization and photochemical alteration of BDOM, and mass transfer coefficients for labile and semi‐labile DOM. Rates of photochemical alteration of labile DOM were an order of magnitude lower than rates of biodegradation of labile DOM, but for semi‐labile DOM, these rates were similar, suggesting that sunlight plays a substantial role in the fate of semi‐labile DOM in streams.
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  • 95
    Publication Date: 2019
    Description: Abstract The duration of seasonal winter ice cover has declined in many mid‐ and high‐latitude regions around the world as climate continues to warm. We obtained data on lake ice breakup dates, air temperature, precipitation, and large‐scale climate oscillations for 152 lakes across the northern hemisphere from 1951 to 2014. Ninety‐seven percent of study lakes exhibited earlier ice breakup trends. Forty‐six percent of the variation in ice breakup trends was driven by spring air temperatures and elevation across the northern hemisphere. However, changes in ice breakup have not always been in a gradual or linear pattern. Using the sequential T‐test analysis of regime shifts, we found evidence of abrupt changes in mean ice breakup for 53% of lakes with shift years identified between 1970 and 2002. Concurrently, we found abrupt changes in mean spring and winter air temperatures, winter precipitation, and large‐scale climate oscillations that occurred either the same year or 1 yr prior. Earlier ice breakup and the shortening of the ice season will have consequences for winter heritage, local economies, and lake ecosystems around the world.
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  • 96
    Publication Date: 2019
    Description: Abstract Increasing glacial discharge can lower salinity and alter organic matter (OM) supply in fjords, but assessing the biogeochemical effects of enhanced freshwater fluxes requires understanding of microbial interactions with OM across salinity gradients. Here, we examined microbial enzymatic capabilities—in bulk waters (nonsize‐fractionated) and on particles (≥ 1.6 μm)—to hydrolyze common OM constituents (peptides, glucose, polysaccharides) along a freshwater–marine continuum within Tyrolerfjord‐Young Sound. Bulk peptidase activities were up to 15‐fold higher in the fjord than in glacial rivers, whereas bulk glucosidase activities in rivers were twofold greater, despite fourfold lower cell counts. Particle‐associated glucosidase activities showed similar trends by salinity, but particle‐associated peptidase activities were up to fivefold higher—or, for several peptidases, only detectable—in the fjord. Bulk polysaccharide hydrolase activities also exhibited freshwater–marine contrasts: xylan hydrolysis rates were fivefold higher in rivers, while chondroitin hydrolysis rates were 30‐fold greater in the fjord. Contrasting enzymatic patterns paralleled variations in bacterial community structure, with most robust compositional shifts in river‐to‐fjord transitions, signifying a taxonomic and genetic basis for functional differences in freshwater and marine waters. However, distinct dissolved organic matter (DOM) pools across the salinity gradient, as well as a positive relationship between several enzymatic activities and DOM compounds, indicate that DOM supply exerts a more proximate control on microbial activities. Thus, differing microbial enzymatic capabilities, community structure, and DOM composition—interwoven with salinity and water mass origins—suggest that increased meltwater may alter OM retention and processing in fjords, changing the pool of OM supplied to coastal Arctic microbial communities.
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  • 97
    Publication Date: 2019
    Description: Abstract Studies on the ecological role of fungi and, to a lesser extent, oomycetes, are receiving increasing attention, mainly due to their participation in the cycling of organic matter in aquatic ecosystems. To unravel their importance in humification processes, we isolated several strains of fungi and oomycetes from Anzali lagoon, Iran. We then performed taxonomic characterization by morphological and molecular methods, analyzed the ability to degrade several polymeric substrates, performed metabolic fingerprinting with Ecoplates, and determined the degradation of humic substances (HS) using liquid chromatography‐organic carbon detection. Our analyses highlighted the capacity of aquatic fungi to better degrade a plethora of organic molecules, including complex polymers. Specifically, we were able to demonstrate not only the utilization of these complex polymers, but also the role of fungi in the production of HS. In contrast, oomycetes, despite some morphological and physiological similarities with aquatic fungi, exhibited a propensity toward opportunism, quickly benefitting from the availability of small organic molecules, while exhibiting sensitivity toward more complex polymers. Despite their contrasting roles, our study highlights the importance of both oomycetes and fungi in aquatic organic matter transformation and cycling with potential implications for the global carbon cycle.
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  • 98
    Publication Date: 2019
    Description: Abstract Vermetid reefs and rocky shores are hot spots of biodiversity, often referred to as the subtropical equivalent of coral reefs. The development of the ecosystem depends on the activity of several reef builders, including red crustose coralline algae (CCA) such as Neogoniolithon brassica‐florida. Despite its importance, little is known about Neogoniolithon sp. acclimation to rapid changes in light intensity and corresponding photosynthetic activity. To overcome the large spatial variability in the light field (due to location and the porous nature of the rocks) we grew Neogoniolithon sp. on glass slides and characterized its photosynthetic performance in response to various light intensities by following O2 exchange and fluorescence parameters. This was also performed on rock‐inhabiting thalli collected from the east Mediterranean basin. Generally, maximal photosynthetic rate was reached when Neogoniolithon sp. thalli grown under low illumination (such as in protected niches where the light intensity can be as low as 1% of surface illumination) were examined. When exposed to light intensities higher than those experienced during growth, Neogoniolithon sp. activates adaptive/protective mechanisms such as state transition and nonphotochemical fluorescence quenching and increases the dark respiration thereafter. We find that the Fv/Fm parameter (variable/maximal fluorescence) is not suitable to assess photosynthetic performance in Neogoniolithon sp. and propose using instead an alternative parameter recently developed. Our findings help to clarify why Neogoniolithon sp. is usually observed in shaded niches along the reef surfaces.
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  • 99
    Publication Date: 2019
    Description: Abstract Seagrass meadows perform an important ecological function as filters for incoming nutrients from surrounding watersheds, especially nitrogen (N). By enhancing N removal processes, including N burial in sediments and denitrification, seagrass meadows improve water quality. With accelerating losses of seagrass meadows worldwide, seagrass restoration plays a key role in reestablishing these coastal ecosystem functions. However, few measurements exist of N burial rates in temperate seagrass meadows and none have been published for restored meadows. In this study, we measured N burial rates in a large (6.9 km2) restored eelgrass (Zostera marina) meadow and compared N removal through burial to previous measurements of removal via denitrification. We also compared N removal to inputs from external loading and fixation and to N assimilation in seagrass biomass. We found that, in this meadow, burial was the dominant process of N removal; the burial rate of 3.52 g N m−2 yr−1 was comparable to rates in natural meadows within 10 yr after seeding and was more than 20× the rate in adjacent bare sediments (0.17 g N m−2 yr−1). We also found that the high rates of N assimilation (2.62 g N m−2 yr−1) created a substantial though temporary sink for nitrogen during the growing season. Our results highlight how seagrass meadows mediate N cycling through high rates of burial, which to date has been understudied in the literature. The successful return of the N filter function after restoration, shown here for the first time, can motivate continued efforts for seagrass restoration and conservation.
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  • 100
    Publication Date: 2019
    Description: Abstract Seagrass meadows are an important organic matter (OM) reservoir but, are currently being lost due to global and regional stressors. Yet, there is limited research investigating the cumulative impacts of anthropogenic stressors on the structure and functioning of seagrass benthic assemblages, key drivers of OM mineralization and burial. Here, using a 16‐month field experiment, we assessed how meiobenthic assemblages and extracellular enzymatic activities (as a proxy of OM degradation) in Posidonia oceanica sediments responded to ocean acidification (OA) and nutrient loadings, at CO2 vents. P. oceanica meadows were exposed to three nutrient levels (control, moderate, and high) at both ambient and low pH sites. OA altered meiobenthic assemblage structure, resulting in increased abundance of annelids and crustaceans, along with a decline in foraminifera. In addition, low pH enhanced OM degradation rates in seagrass sediments by enhancing extracellular enzymatic activities, potentially decreasing the sediment carbon storage capacity of seagrasses. Nutrient enrichment had no effect on the response variables analyzed, suggesting that, under nutrient concentration unlikely to cause N or P imitation, a moderate increase of dissolved nutrients in the water column had limited influence on meiobenthic assemblages. These findings show that OA can significantly alter meiobenthic assemblage structure and enhance OM degradation rates in seagrass sediments. As meiofauna are ubiquitous key actors in the functioning of benthic ecosystems, we postulated that OA, altering the structure of meiobenthic assemblages and OM degradation, could affect organic carbon sequestration over large spatial scales.
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