ALBERT

Description: Looking beyond stratification: a model-based analysis of the biological drivers of oxygen depletion in the North Sea Biogeosciences Discussions, 12, 12543-12610, 2015 Author(s): F. Große, N. Greenwood, M. Kreus, H. J. Lenhart, D. Machoczek, J. Pätsch, L. A. Salt, and H. Thomas The problem of low oxygen conditions, often referred to as hypoxia, occurs regularly in the North Sea, a temperate European shelf sea. Stratification represents a major process regulating the seasonal dynamics of bottom oxygen. However, lowest oxygen conditions in the North Sea do not occur in the regions of strongest stratification. This suggests that stratification is an important prerequisite for hypoxia, but that the complex interaction between hydrodynamics and the biological processes drives its development. In this study we use the ecosystem model HAMSOM-ECOHAM5 to provide a general characteristic of the different North Sea oxygen regimes, and to quantify the impact of the different physical and biological factors driving the oxygen dynamics below the thermocline and in the bottom layer. We show that the North Sea can be subdivided into three different regimes in terms of oxygen dynamics: (1) a highly productive, non-stratified coastal regime, (2) a productive, seasonally stratified regime with a small sub-thermocline volume, and (3) a productive, seasonally stratified regime with a large sub-thermocline volume, with regime 2 being highly susceptible to hypoxic conditions. Our analysis of the different processes driving the oxygen development reveals that inter-annual variations in the oxygen conditions are caused by variations in primary production, while spatial differences can be attributed to differences in stratification and water depth. In addition, we show that benthic bacteria represent the main oxygen consumers in the bottom layer, consistently accounting for more than 50 % of the overall consumption. By providing these valuable insights, we show that ecosystem models can be a useful tool for the interpretation of observations and the estimation of the impact of anthropogenic drivers on the North Sea oxygen conditions.

Description: Optimizing the impact of temperature on bio-hydrogen production from food waste and its derivatives under no pH control using statistical modelling Biogeosciences Discussions, 12, 12823-12850, 2015 Author(s): A. Sattar, C. Arslan, C. Ji, S. Sattar, K. Yousaf, and S. Hashim The effect of temperature on bio-hydrogen production by co-digestion of sewerage sludge with food waste and its two derivatives, i.e. noodle waste and rice waste, was investigated by statistical modelling. Experimental results showed that increasing temperature from mesophilic (37 °C) to thermophilic (55 °C) was an effective mean for increasing bio-hydrogen production from food waste and noodle waste, but it caused a negative impact on bio-hydrogen production from rice waste. The maximum cumulative bio-hydrogen production of 650 mL was obtained from noodle waste under mesophilic temperature condition. Most of the production was observed during 48 h of incubation that continued till 72 h of incubation, and a decline in pH during this interval was 4.3 and 4.4 from a starting value of 7 under mesophilic and thermophilic conditions, respectively. Most of glucose consumption was also observed during 72 h of incubation and the maximum consumption was observed during the first 24 h, which was the same duration where the maximum pH drop occurred. The maximum hydrogen yields of 82.47 mL VS −1 , 131.38 mL COD −1 , and 44.90 mL glucose −1 were obtained from mesophilic food waste, thermophilic noodle waste and mesophilic rice waste respectively. The production of volatile fatty acids increased with an increase in time and temperature from food waste and noodle waste reactors whereas it decreased with temperature in rice waste reactors. The statistical modelling returned good results with high values of coefficient of determination ( R 2 ) for each waste type when it was opted for the study of cumulative hydrogen production, glucose consumption and volatile fatty acid production. The 3-D response surface plots developed by the statistical models helped a lot in developing better understanding of the impact of temperature and incubation time.

Description: Stable isotope study of a new chondrichthyan fauna (Kimmeridgian, Porrentruy, Swiss Jura): an unusual freshwater-influenced isotopic composition for the hybodont shark Asteracanthus Biogeosciences Discussions, 12, 12899-12921, 2015 Author(s): L. Leuzinger, L. Kocsis, J.-P. Billon-Bruyat, S. Spezzaferri, and T. Vennemann Chondrichthyan teeth (sharks, rays and chimaeras) are mineralised in isotopic equilibrium with the surrounding water, and parameters such as water temperature and salinity can be inferred from the oxygen isotopic composition (δ 18 O p ) of their bioapatite. We analysed a new chondrichthyan assemblage, as well as teeth from bony fish (Pycnodontiformes). All specimens are from Kimmeridgian coastal marine deposits of the Swiss Jura (vicinity of Porrentruy, Ajoie district, NW Switzerland). While the overall faunal composition and the isotopic composition of bony fish are consistent with marine conditions, unusually low δ 18 O p values were measured for the hybodont shark Asteracanthus . These values are also lower compared to previously published data from older European Jurassic localities. Additional analyses on material from Solothurn (Kimmeridgian, NW Switzerland) also have comparable, low- 18 O isotopic compositions for Asteracanthus . The data are hence interpreted to represent a so far unique, freshwater-influenced isotopic composition for this shark that is classically considered as a marine genus. While reproduction in freshwater or brackish realms is established for other hybodonts, a similar behaviour for Asteracanthus is proposed here. Regular excursions into lower salinity waters can be linked to the age of the deposits and correspond to an ecological adaptation, most likely driven by the Kimmeridgian transgression and by the competition of the primitive shark Asteracanthus with the rapidly diversifying neoselachians (modern sharks).

Description: Climate change impacts on net primary production (NPP) and export production (EP) regulated by increasing stratification and phytoplankton community structure in CMIP5 models Biogeosciences Discussions, 12, 12851-12897, 2015 Author(s): W. Fu, J. Randerson, and J. K. Moore We examine climate change impacts on net primary production (NPP) and export production (sinking particulate flux; EP) with simulations from nine Earth System Models (ESMs) performed in the framework of the fifth Coupled Model Inter-comparison Project (CMIP5). Global NPP and EP are reduced considerably by the end of the century for the intense warming scenario of Representative Concentration Pathway (RCP) 8.5. Relative to the 1990s, global NPP in the 2090s is reduced by 2.3–16 % and EP by 7–18 %. The models with the largest increases in stratification (and largest relative reductions in NPP and EP) also show the largest positive biases in stratification for the contemporary period, suggesting some potential overestimation of climate impacts on NPP and EP. All of the CMIP5 models show an increase in stratification in response to surface ocean warming and freshening that is accompanied by decreases in NPP, EP, and surface macronutrient concentrations. There is considerable variability across models in the absolute magnitude of these fluxes, surface nutrient concentrations, and their perturbations by climate change, indicating large model uncertainties. The negative response of NPP and EP to stratification increases reflects a bottom-up control, as nutrient flux to the euphotic zone declines. Models with dynamic phytoplankton community structure show larger declines in EP than in NPP. This is driven by phytoplankton community composition shifts, with a reduced percentage of NPP by large phytoplankton under RCP 8.5, as smaller phytoplankton are favored under the increasing nutrient stress. Thus, projections of the NPP response to climate change in the CMIP5 models are critically dependent on the simulated phytoplankton community structure, the efficiency of the biological pump, and the resulting (highly variable) levels of regenerated production. Community composition is represented relatively simply in the CMIP5 models, and should be expanded to better capture the spatial patterns and the changes in export efficiency that are necessary for predicting climate impacts on NPP.

Description: Technical Note: A simple calculation algorithm to separate high-resolution CH 4 flux measurements into ebullition and diffusion-derived components Biogeosciences Discussions, 12, 12923-12945, 2015 Author(s): M. Hoffmann, M. Schulz-Hanke, J. Garcia Alba, N. Jurisch, U. Hagemann, T. Sachs, M. Sommer, and J. Augustin Processes driving the production, transformation and transport of methane (CH 4 ) in wetland ecosystems are highly complex. Thus, serious challenges are constitutes in terms of the mechanistic process understanding, the identification of potential environmental drivers and the calculation of reliable CH 4 emission estimates. We present a simple calculation algorithm to separate open-water CH 4 fluxes measured with automatic chambers into diffusion- and ebullition-derived components, which helps facilitating the identification of underlying dynamics and potential environmental drivers. Flux separation is based on ebullition related sudden concentration changes during single measurements. A variable ebullition filter is applied, using the lower and upper quartile and the interquartile range (IQR). Automation of data processing is achieved by using an established R-script, adjusted for the purpose of CH 4 flux calculation. The algorithm was tested using flux measurement data (July to September 2013) from a former fen grassland site, converted into a shallow lake as a result of rewetting ebullition and diffusion contributed 46 and 55 %, respectively, to total CH 4 emissions, which is comparable to those previously reported by literature. Moreover, the separation algorithm revealed a concealed shift in the diurnal trend of diffusive fluxes throughout the measurement period.

Description: Extraction of oil and natural gas (hydrocarbons) from shale is increasing rapidly in North America, with documented impacts to native species and ecosystems. With shale oil and gas resources on nearly every continent, this development is set to become a major driver of global land-use change. It is increasingly critical to quantify spatial habitat loss driven by this development to implement effective mitigation strategies and develop habitat offsets. Habitat selection is a fundamental ecological process, influencing both individual fitness and population-level distribution on the landscape. Examinations of habitat selection provide a natural means for understanding spatial impacts. We examined the impact of natural gas development on habitat selection patterns of mule deer on their winter range in Colorado. We fit resource selection functions in a Bayesian hierarchical framework, with habitat availability defined using a movement-based modeling approach. Energy development drove considerable alterations to deer habitat selection patterns, with the most substantial impacts manifested as avoidance of well pads with active drilling to a distance of at least 800 m. Deer displayed more nuanced responses to other infrastructure, avoiding pads with active production and roads to a greater degree during the day than night. In aggregate, these responses equate to alteration of behavior by human development in over 50% of the critical winter range in our study area during the day and over 25% at night. Compared to other regions, the topographic and vegetative diversity in the study area appear to provide refugia that allow deer to behaviorally mediate some of the impacts of development. This study, and the methods we employed, provides a template for quantifying spatial take by industrial activities in natural areas and the results offer guidance for policy makers, mangers, and industry when attempting to mitigate habitat loss due to energy development.

Description: Nitrogen export from a boreal stream network following forest harvesting: seasonal nitrate removal and conservative export of organic forms Biogeosciences Discussions, 12, 12061-12089, 2015 Author(s): J. Schelker, R. Sponseller, E. Ring, L. Högbom, S. Löfgren, and H. Laudon Boreal streams are under pressure from large scale disturbance by forestry. Recent scenarios predict an increase in forest production in Scandinavia to meet market demands and to mitigate higher anthropogenic CO 2 emissions. Increased fertilization and shorter forest rotations are anticipated which will likely enhance the pressure on boreal streams in the near future. Among the major environmental impacts of forest harvesting is the increased mobilization of inorganic nitrogen (N), primarily as nitrate (NO 3 - ) into surface waters. But whereas NO 3 - inputs to first-order streams have been previously described, their downstream fate and impact is not well understood. We evaluated the downstream fate of N inputs in a boreal landscape that has been altered by forest harvests over a 10 year period to estimate the effects of multiple clear-cuts on aquatic N export in a boreal stream network. Small streams showed substantial leaching of NO 3 - in response to harvests with concentrations increasing by ~ 15 fold. NO 3 - concentrations at two sampling stations further downstream in the network were strongly seasonal and increased significantly in response to harvesting at the medium size, but not at the larger stream. Nitrate removal efficiency, E r , calculated as the percentage of "forestry derived" NO 3 - that was retained within the landscape using a mass balance model was highest during the snow melt season followed by the growing season, but declined continuously throughout the dormant season. In contrast, export of organic N from the landscape indicated little removal and was essentially conservative. Overall, net removal of NO 3 - between 2008 and 2011 accounted for ~ 70 % of the total NO 3 - mass exported from harvested patches distributed across the landscape. These results highlight the capacity and limitation of N-limited terrestrial and aquatic ecosystems to buffer inorganic N mobilization that arises from multiple clear-cuts within meso-scale boreal watersheds.

Description: Although long-distance migratory songbirds are widely believed to be at risk from warming temperature trends, species capable of attempting more than one brood in a breeding season could benefit from extended breeding seasons in warmer springs. To evaluate local and global factors affecting population dynamics of the black-throated blue warbler ( Setophaga caerulescens ), a double-brooded long-distance migrant, we used Pradel models to analyze 25 years of mark-recapture data collected in New Hampshire, USA. We assessed the effects of spring temperature (local weather) and the El Niño Southern Oscillation index (a global climate cycle), as well as predator abundance, insect biomass, and local conspecific density on population growth in the subsequent year. Local and global climatic conditions affected warbler populations in different ways. We found that warbler population growth was lower following El Niño years (which have been linked to poor survival in the wintering grounds and low fledging weights in the breeding grounds) than La Niña years. At a local scale, populations increased following years with warm springs and abundant late-season food, but were unaffected by spring temperature following years when food was scarce. These results indicate that the warming temperature trends might have a positive effect on recruitment and population growth of black-throated blue warblers if food abundance is sustained in breeding areas. In contrast, potential intensification of future El Niño events could negatively impact vital rates and populations of this species. This article is protected by copyright. All rights reserved.

Description: Ecotones are transition zones that form, in forests, where distinct forest types meet across a climatic gradient. In mountains, ecotones are compressed and act as potential harbingers of species shifts that accompany climate change. As the climate warms in New England, USA, high elevation boreal forests are expected to recede upslope, with northern hardwood species moving up behind. Yet recent empirical studies present conflicting findings on this dynamic, reporting both rapid upward ecotonal shifts and concurrent increases in boreal species within the region. These discrepancies may result from the limited spatial extent of observations. We developed a method to model and map the montane forest ecotone using Landsat imagery to observe change at scales not possible for plot-based studies, covering mountain peaks over 39,000 km 2 . Our results show that ecotones shifted downward or stayed stable on most mountains between 1991 and 2010, but also shifted upward in some cases (13-15% slopes). On average, upper ecotone boundaries moved down -1.5 m·yr −1 in the Green Mountains, VT, and -1.3 m·yr −1 in the White Mountains, NH. These changes agree with re-measured forest inventory data from Hubbard Brook Experimental Forest, NH and suggest that processes of boreal forest recovery from prior red spruce decline, or human landuse and disturbance, may swamp out any signal of climate-mediated migration in this ecosystem. This approach represents a powerful framework for evaluating similar ecotonal dynamics in other mountainous regions of the globe. This article is protected by copyright. All rights reserved.

Description: In order to adequately monitor biodiversity trends through time and their responses to natural or anthropogenic impacts, researchers require long time series that are often unavailable. This general lack of datasets that are several decades or longer makes establishing a background or baseline of diversity metrics difficult – especially when attempting to understand species composition changes against a backdrop of climate and ecological variability. Here we present an analysis of a community of juvenile nearshore fishes based on nearly 8 decades of highly standardized Norwegian survey records. Using multivariate statistical techniques, we: a) characterize the change in taxonomic community composition through time, b) determine whether there has been an increase in warm water affinity species relative to their cold water affinity counterparts, and c) characterize the temporal change in the species’ functional trait assemblage. Our results strongly indicate a shift towards a novel fish assemblage between the late 1990s and 2000s. The context of changes within the most recent two decades are in stark contrast to those during the 60s and 70s, but similar to those during the previous warm period during the 30s and 40s. This novel assemblage is tightly linked to the warming temperatures in the region portrayed by the increased presence of warm water species and a higher incidence of pelagic, planktivorous species. The results indicate a clear influence of ocean temperature on the region's juvenile fish community that points to climate mediated effects on the species assemblages of an important fish nursery area. This article is protected by copyright. All rights reserved.

Description: High Arctic landscapes are expansive and changing rapidly. However our understanding of their functional responses and potential to mitigate or enhance anthropogenic climate change is limited by few measurements. We collected eddy covariance measurements to quantify the net ecosystem exchange (NEE) of CO 2 with polar semidesert and meadow wetland landscapes at the highest-latitude location measured to date (82°N). We coupled these rare data with ground and satellite vegetation production measurements (Normalized Difference Vegetation Index; NDVI) to evaluate the effectiveness of upscaling local to regional NEE. During the growing season, the dry polar semidesert landscape was a near zero sink of atmospheric CO 2 (NEE: -0.3±13.5 g C m −2 ). A nearby meadow wetland accumulated over 300 times more carbon (NEE: -79.3±20.0 g C m −2 ) than the polar semidesert landscape, and was similar to meadow wetland NEE at much more southerly latitudes. Polar semidesert NEE was most influenced by moisture, with wetter surface soils resulting in greater soil respiration and CO 2 emissions. At the meadow wetland, soil heating enhanced plant growth, which in turn increased CO 2 uptake. Our upscaling assessment found that polar semidesert NDVI measured on site was low (mean: 0.120-0.157) and similar to satellite measurements (mean: 0.155-0.163). However, weak plant growth resulted in poor satellite NDVI-NEE relationships and created challenges for remotely-detecting changes in the cycling of carbon on the polar semidesert landscape. The meadow wetland appeared more suitable to assess plant production and NEE via remote-sensing, however high Arctic wetland extent is constrained by topography to small areas that may be difficult to resolve with large satellite pixels. We predict that until summer precipitation and humidity increases substantially, climate-related changes of dry high Arctic landscapes may be restricted by poor soil moisture retention, and therefore have some inertia against short-term changes in NEE. This article is protected by copyright. All rights reserved.

Description: Hydroxy fatty acids in fresh snow samples from northern Japan: long-range atmospheric transport of Gram-negative bacteria by Asian winter monsoon Biogeosciences Discussions, 12, 13375-13397, 2015 Author(s): P. Tyagi, S. Yamamoto, and K. Kawamura Hydroxy fatty acids (FAs) in fresh snow from Sapporo, one of the heaviest snowfall regions in the world, have been studied to ascertain the airborne bacterial endotoxin concentrations and their biomass. The presence of β-hydroxy FAs (C 9 –C 28 ), constituents of Gram-negative bacteria (GNB), suggests long-range transport of soil microbes. Likewise, the occurrence of α- and ω-hydroxy FAs (C 9 –C 30 and C 9 –C 28 , respectively) in snow reveals their contribution from epicuticular waxes and soil microorganisms. Estimated endotoxin and GNB mass can aid in assessing their possible impacts on the diversity and functioning of aquatic and terrestrial ecosystems, as well as lethal effects on pedestrians through dispersal of microbes. Air mass back trajectories together with hydroxy FAs unveil their sources from Siberia, Russian Far East and North China by the Asian monsoon. This study highlights the role of fresh snow that reduces the human health risk of GNB and endotoxin by scavenging from the air.

Description: Nitrogen cycling in the subsurface biosphere: nitrate isotopes in porewaters underlying the oligotrophic North Atlantic Biogeosciences Discussions, 12, 13545-13591, 2015 Author(s): S. D. Wankel, C. Buchwald, W. Ziebis, C. B. Wenk, and M. F. Lehmann Nitrogen (N) is a key component of fundamental biomolecules. Hence, the cycling and availability of N is a central factor governing the extent of ecosystems across the Earth. In the organic-lean sediment porewaters underlying the oligotrophic ocean, where low levels of microbial activity persist despite limited organic matter delivery from overlying water, the extent and modes of nitrogen transformations have not been widely investigated. Here we use the N and oxygen (O) isotopic composition of porewater nitrate (NO 3 − ) from a site in the oligotrophic North Atlantic (IODP) to determine the extent and magnitude of microbial nitrate production (via nitrification) and consumption (via denitrification). We find that NO 3 − accumulates far above bottom seawater concentrations (∼ 21 μM) throughout the sediment column (up to ∼ 50 μM) down to the oceanic basement as deep as 90 mbsf, reflecting the predominance of aerobic nitrification/remineralization within the deep marine sediments. Large changes in the δ 15 N and δ 18 O of nitrate, however, reveal variable influence of nitrate respiration across the three sites. We use an inverse porewater diffusion–reaction model, constrained by the N and O isotope systematics of nitrification and denitrification and the porewater NO 3 − isotopic composition, to estimate rates of nitrification and denitrification throughout the sediment column. Results indicate variability of reaction rates across and within the three boreholes that are generally consistent with the differential distribution of dissolved oxygen at this site, though not necessarily with the canonical view of how redox thresholds separate nitrate regeneration from dissimilative consumption spatially. That is, we provide isotope evidence for expanded zones of co-ocurring nitrification and denitrification. The isotope biogeochemical modeling also yielded estimates for the δ 15 N and δ 18 O of newly produced nitrate (δ 15 N NTR and δ 18 O NTR ), as well as the isotope effect for denitrification ( 15 ϵ DNF ), parameters with high relevance to global ocean models of N cycling. Estimated values of δ 15 N NTR were generally lower than previously reported δ 15 N values for sinking PON in this region. We suggest that these values can be related to sedimentary N-fixation and remineralization of the newly fixed organic N. Values of δ 18 O NTR generally ranged between −2.8 and 0.0 ‰, consistent with recent estimates based on lab cultures of nitrifying bacteria. Notably, some δ 18 O NTR values were elevated, suggesting incorporation of 18 O-enriched dissolved oxygen during nitrification, and possibly indicating a tight coupling of NH 4 + and NO 2 − oxidation in this metabolically sluggish environment. Our findings indicate that the production of organic matter by in situ autotrophy (e.g., nitrification, nitrogen fixation) supply a large fraction of the biomass and organic substrate for heterotrophy in these sediments, supplementing the small organic matter pool derived from the overlying euphotic zone. This work sheds new light on an active nitrogen cycle operating, despite exceedingly low carbon inputs, in the deep sedimentary biosphere.

Description: Spring bloom onset in the Nordic Seas Biogeosciences Discussions, 12, 13631-13673, 2015 Author(s): A. Mignot, R. Ferrari, and K. A. Mork The North Atlantic spring bloom is a massive annual growth event of marine phytoplankton, tiny free-floating algae that form the base of the ocean's food web and generates a large fraction of the global primary production of organic matter. The conditions that trigger the onset of the spring bloom in the Nordic Seas, at the northern edge of the North Atlantic, are studied using in-situ data from five bio-optical floats released above the Arctic Circle. It is often assumed that spring blooms start as soon as phytoplankton cells daily irradiance is sufficiently abundant that division rates exceed losses. The bio-optical float data instead suggest the tantalizing hypothesis that Nordic Seas blooms start when the photoperiod, the number of daily light hours experienced by phytoplankton, exceeds a critical value, independently of division rates. This bloom behavior may be explained by realizing that photosynthesis is impossible during polar nights and phytoplankton enters in a dormant stage in winter, only to be awaken by a photoperiodic trigger. While the first accumulation of biomass recorded by the bio-optical floats is consistent with the photoperiod hypothesis, it is possible that some biomass accumulation started before the critical photoperiod but at levels too low to be detected by the fluorometers. Thus more precise observations are needed to test the photoperiod hypothesis.

Description: Unusual biogenic calcite structures in two shallow lakes, James Ross Island, Antarctica Biogeosciences Discussions, 12, 13593-13629, 2015 Author(s): J. Elster, L. Nedbalová, R. Vodrážka, K. Láska, J. Haloda, and J. Komárek The floors of two shallow endorheic lakes, located on volcanic surfaces on James Ross Island, are covered with calcareous organosedimentary structures. Their biological and chemical composition, lake water characteristics, and seasonal variability of the thermal regime are introduced. The lakes are frozen down to the bottom eight-nine months per year and their water chemistry is characterized by low conductivity and neutral to slightly alkaline pH. The photosynthetic microbial mat is composed of filamentous cyanobacteria and microalgae that are considered to be Antarctic endemic species. The mucilaginous black biofilm is covered by green spots formed by a green microalga and the macroscopic structures are packed together with fine material. Thin sections consist of rock substrate, soft biofilm, calcite spicules and mineral grains originating from different sources. The morphology of the spicules is typical of calcium carbonate monocrystals having a layered structure and worn surface, which reflect growth and degradation processes. The spicules chemical composition and structure correspond to pure calcite. Lakes age, altitude, morphometry, geomorphological and hydrological stability, including low sedimentation rates, together with thermal regime predispose the existence of this community. We hypothesize that the precipitation of calcite is connected with the photosynthetic activity of the green microalgae that were not recorded in any other lake in the region. This study has shown that the unique community producing biogenic calcite spicules is quite different to any yet described.

Description: Urban areas are expanding rapidly in tropical regions, with potential to alter ecosystem dynamics. In particular, exotic grasses and atmospheric nitrogen (N) deposition simultaneously affect urbanized landscapes, with unknown effects on properties like soil carbon (C) storage. We hypothesized that: (H1.) Soil nitrate (NO 3 - ) is elevated nearer to the urban core, reflecting N deposition gradients. (H2.) Exotic grasslands have drier soils, elevated NO 3 - , and decreased soil C relative to secondary forests, with higher N promoting decomposer activity. (H3.) Exotic grasslands have greater seasonality in soil NO 3 - versus secondary forests, due to higher sensitivity of grassland soil moisture to rainfall. We predicted that NO 3 - would be related to dissolved organic C (DOC) production via changes in decomposer activity. We measured six paired grassland/secondary-forest sites along a tropical urban-to-rural gradient during three dominant seasons (hurricane, dry, and early wet). We found that: (1.) Soil NO 3 - was generally elevated near the urban core, with particularly clear spatial trends for grasslands. (2.) Exotic grasslands had lower soil C than secondary forests, which was related to elevated decomposer enzyme activities and soil respiration. Unexpectedly, soil NO 3 - was negatively related to enzyme activities, and was higher in forests than grasslands. (3.) Grasslands had greater soil NO 3 - seasonality versus forests, but this was not strongly linked to shifts in soil moisture or DOC. Our results suggest that exotic grasses in tropical regions are likely to drastically reduce soil C storage, but that N deposition may have an opposite effect via suppression of enzyme activities. However, soil NO 3 - accumulation here was higher in urban forests than grasslands, potentially due to an interplay of aboveground N interception and soil processes. Net urban effects on C storage across tropical landscapes will likely vary depending on rates of N deposition, the mosaic of land covers, and responses by local decomposer communities. This article is protected by copyright. All rights reserved.

Description: Soils are subject to varying degrees of direct or indirect human disturbance, constituting a major global change driver. Factoring out natural from direct and indirect human influence is not always straightforward, but some human activities have clear impacts. These include land use change, land management, and land degradation (erosion, compaction, sealing and salinization). The intensity of land use also exerts a great impact on soils, and soils are also subject to indirect impacts arising from human activity, such as acid deposition (sulphur and nitrogen) and heavy metal pollution. In this critical review, we report the state-of-the-art understanding of these global change pressures on soils, identify knowledge gaps and research challenges, and highlight actions and policies to minimise adverse environmental impacts arising from these global change drivers. Soils are central to considerations of what constitutes sustainable intensification. Therefore, ensuring that vulnerable and high environmental value soils are considered when protecting important habitats and ecosystems, will help to reduce the pressure on land from global change drivers. To ensure that soils are protected as part of wider environmental efforts, a global soil resilience programme should be considered, to monitor, recover or sustain soil fertility and function, and to enhance the ecosystem services provided by soils. Soils cannot, and should not, be considered in isolation of the ecosystems that they underpin and vice versa. The role of soils in supporting ecosystems and natural capital needs greater recognition. The lasting legacy of the International Year of Soils in 2015 should be to put soils at the centre of policy supporting environmental protection and sustainable development. This article is protected by copyright. All rights reserved.

Description: The response of soil organic carbon (SOC) pools to globally rising surface temperature crucially determines the feedback between climate change and the global carbon cycle. However, there is a lack of studies investigating the temperature sensitivity of decomposition for decadally cycling SOC which is the main component of total soil carbon stock and the most relevant to global change. We tackled this issue by using two decadally 13 C-labeled soils and a much improved measuring system in a long-term incubation experiment. Results indicated that the temperature sensitivity of decomposition for decadally-cycling SOC (〉 23 years in one soil and 〉 55 years in the other soil) was significantly greater than that for faster-cycling SOC (〈 23 or 55 years) or for the entire SOC stock. Moreover, decadally-cycling SOC contributed substantially (35-59%) to the total CO 2 loss during the 360-day incubation. Overall, these results indicate that the decomposition of decadally-cycling SOC is highly sensitive to temperature change, which will likely make this large SOC stock vulnerable to loss by global warming in the 21 st century and beyond. This article is protected by copyright. All rights reserved.

Description: Characterizing Leaf Area Index (LAI) and Vertical Foliage Profile (VFP) over the United States Biogeosciences Discussions, 12, 13675-13710, 2015 Author(s): H. Tang, S. Ganguly, G. Zhang, M. A. Hofton, R. F. Nelson, and R. Dubayah Leaf area index (LAI) and vertical foliage profile (VFP) are among the important canopy structural variables. Recent advances in lidar remote sensing technology have demonstrated the capability of accurately mapping LAI and VFP over large areas. The primary objective of this study was to derive and validate a LAI and VFP product over the contiguous United States using spaceborne waveform lidar data. This product was derived at the footprint level from the Geoscience Laser Altimeter System (GLAS) using a biophysical model. We validated GLAS derived LAI and VFP across major forest biomes using airborne waveform lidar. The comparison results showed that GLAS retrievals of total LAI were generally accurate with little bias ( r 2 = 0.67, bias = −0.13, RMSE = 0.75). The derivations of GLAS retrievals of VFP within layers was not as accurate overall ( r 2 = 0.36, bias = −0.04, RMSE = 0.26), and these varied as a function of height, increasing from understory to overstory −0 to 5 m layer: r 2 = 0.04, bias = 0.09, RMSE = 0.31; 10 to 15 m layer: r 2 = 0.53, bias = −0.08, RMSE = 0.22; and 15 to 20 m layer: r 2 = 0.66, bias =−0.05, RMSE = 0.20. Significant relationships were also found between GLAS LAI products and different environmental factors, in particular elevation and annual precipitation. In summary, our results provide a unique insight into vertical canopy structure distribution across North American ecosystems. This data set is a first step towards a baseline of canopy structure needed for evaluating climate and land use induced forest changes at continental scale in the future and should help deepen our understanding of the role of vertical canopy structure on terrestrial ecosystem processes across varying scales.

Description: Application of the 15 N-Gas Flux method for measuring in situ N 2 and N 2 O fluxes due to denitrification in natural and semi-natural terrestrial ecosystems and comparison with the acetylene inhibition technique Biogeosciences Discussions, 12, 12653-12689, 2015 Author(s): F. Sgouridis, S. Ullah, and A. Stott Soil denitrification is considered the most un-constrained process in the global N cycle due to uncertain in situ N 2 flux measurements, particularly in natural and semi-natural terrestrial ecosystems. 15 N tracer approaches can provide in situ measurements of both N 2 and N 2 O simultaneously, but their use has been limited to fertilised agro-ecosystems due to the need for large 15 N additions in order to detect 15 N 2 production against the high atmospheric N 2 . For 15 N-N 2 analyses, we have used an "in house" laboratory designed and manufactured N 2 preparation instrument which can be interfaced to any commercial continuous flow isotope ratio mass spectrometer (CF-IRMS). The N 2 prep unit has gas purification steps, a copper based reduction furnace, and allows the analysis of small gas injection volumes (4 μL) for 15 N-N 2 analysis. For the analysis of N 2 O, an automated Tracegas Pre-concentrator (Isoprime Ltd) coupled to an IRMS was used to measure the 15 N-N 2 O (4 mL gas injection volume). Consequently, the coefficient of variation for the determination of isotope ratios for N 2 in air and in standard N 2 O (0.5 ppm) was better than 0.5 %. The 15 N Gas-Flux method was adapted for application in natural and semi-natural land use types (peatlands, forests and grasslands) by lowering the 15 N tracer application rate to 0.04–0.5 kg 15 N ha −1 . For our chamber design (volume / surface = 8:1) and a 20 h incubation period, the minimum detectable flux rates were 4 μg N m −2 h −1 and 0.2 ng N m −2 h −1 for the N 2 and N 2 O fluxes respectively. The N 2 flux ranged between 2.4 and 416.6 μg N m −2 h −1 , and the grassland soils showed on average 3 and 14 times higher denitrification rates than the woodland and organic soils respectively. The N 2 O flux was on average 20 to 200 times lower than the N 2 flux, while the denitrification product ratio (N 2 O/N 2 + N 2 O) was low, ranging between 0.03 and 13 %. Total denitrification rates measured by the acetylene inhibition technique under the same field conditions correlated ( r = 0.58) with the denitrification rates measured under the 15 N Gas-Flux method but were underestimated by a factor of 4 and this was attributed to the incomplete inhibition of N 2 O reduction to N 2 under relatively high soil moisture content. The results show that the 15 N Gas-Flux method can be used for quantifying N 2 and N 2 O production rates in natural terrestrial ecosystems, thus significantly improving our ability to constrain ecosystem N budgets.

Description: Natural variability in the surface ocean carbonate ion concentration Biogeosciences Discussions, 12, 13123-13157, 2015 Author(s): N. S. Lovenduski, M. C. Long, and K. Lindsay We investigate variability in the surface ocean carbonate ion concentration ([CO 3 2− ]) on the basis of a long control simulation with a fully-coupled Earth System Model. The simulation is run with a prescribed, pre-industrial atmospheric CO 2 concentration for 1000 years, permitting investigation of natural [CO 3 2− ] variability on interannual to multi-decadal timescales. We find high interannual variability in surface [CO 3 2− ] in the tropical Pacific and at the boundaries between the subtropical and subpolar gyres in the Northern Hemisphere, and relatively low interannual variability in the centers of the subtropical gyres and in the Southern Ocean. Statistical analysis of modeled [CO 3 2− ] variance and autocorrelation suggests that significant anthropogenic trends in the saturation state of aragonite (Ω aragonite ) are already or nearly detectable at the sustained, open-ocean timeseries sites, whereas several decades of observations are required to detect anthropogenic trends in Ω aragonite in the tropical Pacific, North Pacific, and North Atlantic. The detection timescale for anthropogenic trends in pH is shorter than that for Ω aragonite , due to smaller noise-to-signal ratios and lower autocorrelation in pH. In the tropical Pacific, the leading mode of surface [CO 3 2− ] variability is primarily driven by variations in the vertical advection of dissolved inorganic carbon (DIC) in association with El Niño–Southern Oscillation. In the North Pacific, surface [CO 3 2− ] variability is caused by circulation-driven variations in surface DIC and strongly correlated with the Pacific Decadal Oscillation, with peak spectral power at 20–30 year periods. North Atlantic [CO 3 2− ] variability is also driven by variations in surface DIC, and exhibits weak correlations with both the North Atlantic Oscillation and the Atlantic Multidecadal Oscillation. As the scientific community seeks to detect the anthropogenic influence on ocean carbonate chemistry, these results will aid the interpretation of trends calculated from spatially- and temporally-sparse observations.

Description: Human induced climate change is projected to increase ocean temperature and modify circulation patterns, with potential widespread implications for the transport and survival of planktonic larvae of marine organisms. Circulation affects the dispersal of larvae, whereas temperature impacts larval development and survival. However, the combined effect of changes in circulation and temperature on larval dispersal and survival has not been studied in a future climate scenario. Such understanding is crucial to predict future species distributions, anticipate ecosystem shifts, and design effective management strategies. We simulate contemporary (1990s) and future (2060s) dispersal of lobster larvae using an eddy-resolving ocean model in south-eastern Australia, a region of rapid ocean warming. Here we show that the effects of changes in circulation and temperature can counter each other: ocean warming favours the survival of lobster larvae, whereas a strengthened western boundary current diminishes the supply of larvae to the coast by restricting cross-current larval dispersal. Furthermore, we find that changes in circulation have a stronger effect on connectivity patterns of lobster larvae along south-eastern Australia than ocean warming in the future climate so that the supply of larvae to the coast reduces by ~ 4% and the settlement peak shifts poleward by ~270km in the model simulation. Thus ocean circulation may be one of the dominant factors contributing to the climate-induced expansion of species ranges. This article is protected by copyright. All rights reserved.

Description: Spatial and temporal trends in summertime climate and water quality indicators in the coastal embayments of Buzzards Bay, Massachusetts Biogeosciences Discussions, 12, 13159-13192, 2015 Author(s): J. E. Rheuban, S. C. Williamson, J. E. Costa, D. M. Glover, R. W. Jakuba, D. C. McCorkle, C. Neill, T. Williams, and S. C. Doney Degradation of coastal ecosystems by eutrophication is largely defined by nitrogen loading from land via surface and groundwater flows. However, indicators of water quality are highly variable due to a myriad of other drivers, including temperature and precipitation. To evaluate these drivers, we examined spatial and temporal trends in a 22 year record of summer water quality data from 122 stations in 17 embayments within Buzzards Bay, MA (USA), collected through a citizen science monitoring program managed by Buzzards Bay Coalition. To identify spatial patterns across Buzzards Bay's embayments, we used a principle component and factor analysis and found that rotated factor loadings indicated little correlation between inorganic nutrients and organic matter and chlorophyll a (Chl a ) concentration. Factor scores showed that embayment geomorphology in addition to nutrient loading was a strong driver of water quality, where embayments with surface water inputs showed larger biological impacts than embayments dominated by groundwater influx. A linear regression analysis of annual summertime water quality indicators over time revealed that from 1992 to 2013, most embayments (15 of 17) exhibited an increase in temperature (mean rate of 0.082 ± 0.025 (SD) °C yr −1 ) and Chl a (mean rate of 0.0171 ± 0.0088 log 10 (Chl a ; mg m −3 ) yr −1 , equivalent to a 4.0 % increase per year). However, only 7 embayments exhibited an increase in total nitrogen (TN) concentration (mean rate 0.32 ± 0.47 (SD) μM yr −1 ). Average summertime log 10 (TN) and log 10 (Chl a ) were correlated with an indication that yield of Chl a per unit total nitrogen increased with time suggesting the estuarine response to TN may have changed because of other stressors such as warming, altered precipitation patterns, or changing light levels. These findings affirm that nitrogen loading and physical aspects of embayments are essential in explaining observed ecosystem response. However, climate-related stressors may also need to be considered by managers because increased temperature and precipitation may worsen water quality and partially offset benefits achieved by reducing nitrogen loading.

Description: Carbon dynamics in highly heterotrophic subarctic thaw ponds Biogeosciences Discussions, 12, 11707-11749, 2015 Author(s): T. Roiha, I. Laurion, and M. Rautio Global warming has accelerated the formation of permafrost thaw ponds in several subarctic and arctic regions. These ponds are net heterotrophic as evidenced by their greenhouse gas (GHG) supersaturation levels (CO 2 and CH 4 ), and generally receive large terrestrial carbon inputs from the thawing and eroding permafrost. We measured seasonal and vertical variations in the concentration and type of dissolved organic matter (DOM) in five subarctic thaw (thermokarst) ponds in northern Quebec, and explored how environmental gradients influenced heterotrophic and phototrophic biomass and productivity. Late winter DOM had low aromaticity indicating reduced inputs of terrestrial carbon, while the high concentration of dissolved organic carbon (DOC) suggests that some production of non-chromophoric dissolved compounds by the microbial food web took place under the ice cover. Summer DOM had a strong terrestrial signature, but was also characterized with significant inputs of algal-derived carbon, especially at the pond surface. During late winter, bacterial production was low (maximum of 0.8 mg C m −3 d −1 ) and was largely based on free-living bacterioplankton (58 %). Bacterial production in summer was high (up to 58 mg C m −3 d −1 ), dominated by particle-attached bacteria (67 %), and strongly correlated to the amount of terrestrial carbon. Primary production was restricted to summer surface waters due to strong light limitation deeper in the water column or in winter. The phototrophic biomass was equal to the heterotrophic biomass, but as the algae were mostly composed of mixotrophic species, most probably they used bacteria rather than solar energy in such shaded ponds. According to the δ 13 C analyses, non-algal carbon supported 51 % of winter and 37 % of summer biomass of the phantom midge larvae, Chaoborus sp., that are at the top of the trophic chain. Our results point to a strong heterotrophic energy pathway in these thaw pond ecosystems, where bacterioplankton dominates the production of new carbon in both summer and winter.

Description: The zooplankton of the northern California Current are typically characterized by an abundance of lipid-rich copepods that support rapid growth and survival of ecologically, commercially, and recreationally valued fish, birds, and mammals. Disruption of this food chain and reduced ecosystem productivity are often associated with climatic variability such as El Niño events. We examined the variability in timing, magnitude, and duration of positive temperature anomalies and changes in copepod species composition in the northern California Current in relation to ten tropical El Niño events. Measureable impacts on mesozooplankton of the northern California Current were observed during seven out of ten of these events. The occurrence of anomalously warm water and the response of the copepod community was rapid (lag of zero to two months) following the initiation of canonical Eastern Pacific events, but delayed (lag of two to eight months) following “Modoki” Central Pacific events. The variable lags in the timing of a physical and biological response led to impacts in the northern California Current peaking in winter during EP events and in the spring during CP events. The magnitude and duration of the temperature and copepod anomalies were strongly and positively related to the magnitude and duration of El Niño events, but were also sensitive to the phase of the lower-frequency Pacific Decadal Oscillation. When fisheries managers and biological oceanographers are faced with the prospect of a future El Niño event, prudent management and observation will require consideration of the background oceanographic conditions, the type of event, and both the magnitude and duration of the event when assessing the potential physical and biological impacts on the northern California Current. This article is protected by copyright. All rights reserved.

Description: Phototrophic pigment diversity and picophytoplankton abundance in permafrost thaw lakes Biogeosciences Discussions, 12, 12121-12156, 2015 Author(s): A. Przytulska, J. Comte, S. Crevecoeur, C. Lovejoy, I. Laurion, and W. F. Vincent Permafrost thaw lakes (thermokarst lakes) are widely distributed across the northern landscape, and are known to be biogeochemically active sites that emit large amounts of carbon to the atmosphere as CH 4 and CO 2 . However, the abundance and composition of the photosynthetic communities that consume CO 2 have been little explored in this ecosystem type. In order to identify the major groups of phototrophic organisms and their controlling variables, we sampled 12 permafrost thaw lakes along a permafrost degradation gradient in northern Québec, Canada. Additional samples were taken from 5 rock-basin reference lakes in the region to determine if the thaw waters differed in limnological properties and phototrophs. Phytoplankton community structure was determined by high performance liquid chromatography analysis of their photoprotective and photosynthetic pigments, and autotrophic picoplankton concentrations were assessed by flow cytometry. One of the black colored lakes located in a andscape of rapidly degrading palsas (permafrost mounds) was selected for high-throughput 18S rRNA sequencing to help interpret the pigment and cytometry data. The results showed that the limnological properties of the thaw lakes differed significantly from the reference lakes, and were more highly stratified. However, both waterbody types contained similarly diverse phytoplankton groups, with dominance of the pigment assemblages by fucoxanthin-containing taxa, as well as chlorophytes, cryptophytes and cyanobacteria. Chlorophyll a concentrations (Chl a ) were correlated with total phosphorus (TP), and both were significantly higher in the thaw lakes (overall means of 3.3 μg Chl a L −1 and 34 μg TP L −1 ) relative to the reference lakes (2.0 μg Chl a L −1 and 8.2 μg TP L −1 ). Stepwise multiple regression of Chl a against the other algal pigments showed that it was largely a function of lutein, fucoxanthin and peridinin ( R 2 = 0.78). The bottom waters of two of the thaw lakes also contained high concentrations of bacteriochlorophyll d , showing the presence of green photosynthetic sulphur bacteria. The molecular analyses indicated a relatively minor contribution of diatoms, while chrysophytes, dinoflagellates and chlorophytes were well represented; the heterotrophic eukaryote fraction was dominated by numerous ciliate taxa, and also included Heliozoa, Rhizaria, chytrids and flagellates. Autotrophic picoplankton occurred in cell concentrations up to 8.8 × 10 5 mL −1 (picocyanobacteria) and 4.6 × 10 5 mL −1 (picoeukaryotes). Both groups of picophytoplankton were positively correlated with total phytoplankton abundance, as measured by Chl a ; picocyanobacteria were inversely correlated with dissolved organic carbon, while picoeukaryotes were correlated with conductivity. Despite their net heterotrophic character, subarctic thaw lakes are rich habitats for diverse phototrophic communities.

Description: Time series of environmental measurements are essential for detecting, measuring and understanding changes in the Earth system and its biological communities. Observational series have accumulated over the past 2-5 decades from measurements across the world's estuaries, bays, lagoons, inland seas and shelf waters influenced by runoff. We synthesize information contained in these time series to develop a global view of changes occurring in marine systems influenced by connectivity to land. Our review is organized around four themes: (1) human activities as drivers of change; (2) variability of the climate system as a driver of change; (3) successes, disappointments and challenges of managing change at the sea-land interface; and (4) discoveries made from observations over time. Multidecadal time series reveal that many of the world's estuarine-coastal ecosystems are in a continuing state of change, and the pace of change is faster than we could have imagined a decade ago. Some have been transformed into novel ecosystems with habitats, biogeochemistry and biological communities outside the natural range of variability. Change takes many forms including linear and nonlinear trends, abrupt state changes, and oscillations. The challenge of managing change is daunting in the coastal zone where diverse human pressures are concentrated and intersect with different responses to climate variability over land and over ocean basins. The pace of change in estuarine-coastal ecosystems will likely accelerate as the human population and economies continue to grow and as global climate change accelerates. Wise stewardship of the resources upon which we depend is critically dependent upon a continuing flow of information from observations to measure, understand and anticipate future changes along the world's coastlines. This article is protected by copyright. All rights reserved.

Description: Skeletal mineralogy of coral recruits under high temperature and p CO 2 Biogeosciences Discussions, 12, 12485-12500, 2015 Author(s): T. Foster and P. L. Clode Aragonite, which is the polymorph of CaCO 3 precipitated by modern corals during skeletal formation, has a higher solubility than the more stable polymorph calcite. This higher solubility leaves animals that produce aragonitic skeletons more vulnerable to anthropogenic ocean acidification. It is therefore, important to determine whether scleractinian corals have the plasticity to adapt and produce calcite in their skeletons in response to changing environmental conditions. Both high p CO 2 and lower Mg / Ca ratios in seawater are thought to have driven changes in the skeletal mineralogy of major marine calcifiers in the past ∼540 myr. Experimentally reduced Mg / Ca ratios in ambient seawater have been shown to induce some calcite precipitation in both adult and newly settled modern corals, however, the impact of high p CO 2 on the mineralogy of recruits is unknown. Here we determined the skeletal mineralogy of one-month old Acropora spicifera coral recruits grown under high temperature (+3 °C) and p CO 2 (∼900 μatm) conditions, using X-ray diffraction and Raman spectroscopy. We found that newly settled coral recruits produced entirely aragonitic skeletons regardless of the treatment. Our results show that elevated p CO 2 alone is unlikely to drive changes in the skeletal mineralogy of young corals. Not having an ability to switch from aragonite to calcite precipitation may leave corals and ultimately coral reef ecosystems more susceptible to predicted ocean acidification. An important area for prospective research would be to investigate the combined impact of high p CO 2 and reduced Mg / Ca ratio on coral skeletal mineralogy.

Description: The impact of sedimentary alkalinity release on the water column CO 2 system in the North Sea Biogeosciences Discussions, 12, 12395-12453, 2015 Author(s): H. Brenner, U. Braeckman, M. Le Guitton, and F. J. R. Meysman Recently, it has been proposed that alkalinity release from sediments can play an important role in the carbonate dynamics on continental shelves, lowering the p CO 2 of seawater and hence increasing the CO 2 uptake from the atmosphere. To test this hypothesis, sedimentary alkalinity generation was quantified within permeable and muddy sediments across the North Sea during two cruises in September 2011 (basin-wide) and June 2012 (Dutch coastal zone). Benthic fluxes of alkalinity ( A T ) and dissolved inorganic carbon (DIC) were determined using shipboard closed sediment incubations. These results show that sediments can be an important source for alkalinity, particularly in the shallow southern North Sea, where high A T and DIC fluxes were recorded in near shore sediments of the Belgian, Dutch and German coastal zone. In contrast, fluxes of A T and DIC are substantially lower in the deeper, seasonally stratified, northern part of the North Sea. Overall, our results show that sedimentary alkalinity generation should be considered an important factor in the CO 2 dynamics of shallow coastal systems.

Description: Contribution of Marine Group II Euryarchaeota to cyclopentyl tetraethers in the Pearl River estuary and coastal South China Sea: impact on the TEX 86 paleothermometer Biogeosciences Discussions, 12, 12455-12484, 2015 Author(s): J. X. Wang, C. L. Zhang, W. Xie, Y. G. Zhang, and P. Wang TEX 86 (TetraEther indeX of glycerol dialkyl glycerol tetraethers (GDGTs) with 86 carbon atoms) has been widely applied to reconstruct (paleo-) sea surface temperature (SST). While Marine Group I (MG I) Thaumarchaeota have been commonly believed to be the source for GDGTs, Marine Group II (MG II Euryarchaeota ) have recently been suggested to contribute significantly to the GDGT pool in the ocean. However, little is known how the MG II Euryarchaeota -derived GDGTs may influence TEX 86 in marine sediment record. In this study, we characterize MG II Euryarchaeota -produced GDGTs and assess the likely effect of these tetraether lipids on TEX 86 . Analyses of core lipid (CL-) and intact polar lipid (IPL-) based GDGTs, 454 sequencing and quantitative polymerase chain reaction (qPCR) targeting MG II Euryarchaeota were performed on suspended particulate matter (SPM) and surface sediments collected along a salinity gradient from the lower Pearl River (river water) and its estuary (mixing water) to the coastal South China Sea (seawater). The results showed that the community composition varied along the salinity gradient with MG II Euryarchaeota as the second dominant group in the mixing water and seawater. qPCR data indicated that the abundance of MG II Euryarchaeota in the mixing water was three to four orders of magnitude higher than the river water and seawater. Significant linear correlations were observed between the gene abundance ratio of MG II Euryarchaeota vs. total archaea and the relative abundance of GDGTs-1, -2, -3, or -4 as well as the ring index based on these compounds, which collectively suggest that MG II Euryarchaeota may actively produce GDGTs in the water column. These results also show strong evidence that MG II Euryarchaeota synthesizing GDGTs with 1–4 cyclopentane moieties may bias TEX 86 in the water column and sediments. This study highlights that valid interpretation of TEX 86 in sediment record, particularly in coastal oceans, needs to consider the contribution from MG II Euryarchaeota .

Description: Soil is the largest stock of carbon (C) in the terrestrial biosphere, so even slight changes in soil C stock may induce significant fluctuations in the atmospheric C dioxide (CO 2 ) concentration. Early coupled C-climate models predicted that positive C-climate feedback would be triggered due to the acceleration of C release to the atmosphere under future climate warming (Cox et al ., 2000). However, due to the omission of key microbial components and biogeochemical mechanisms in these models (Wieder et al ., 2013), these predictions remain controversial, because soil C dynamics is still highly uncertain among results simulated by 11 Earth system models (ESMs) involved in CMIP5 (Ciais et al ., 2013). This article is protected by copyright. All rights reserved.

Description: Fate of peat-derived carbon and associated CO 2 and CO emissions from two Southeast Asian estuaries Biogeosciences Discussions, 12, 8299-8340, 2015 Author(s): D. Müller, T. Warneke, T. Rixen, M. Müller, A. Mujahid, H. W. Bange, and J. Notholt Coastal peatlands in Southeast Asia release large amounts of organic carbon to rivers, which transport it further to the adjacent estuaries. However, little is known about the fate of this terrestrial material in the coastal ocean. Although Southeast Asia is, by area, considered a hotspot of estuarine CO 2 emissions, studies in this region are very scarce. We measured dissolved and particulate organic carbon, carbon dioxide (CO 2 ) partial pressure and carbon monoxide (CO) concentrations in two tropical estuaries in Sarawak, Malaysia, whose coastal area is covered by peatlands. We surveyed the estuaries of the rivers Lupar and Saribas during the wet and dry season, respectively. The spatial distribution and the carbon-to-nitrogen ratios of dissolved organic matter (DOM) suggest that peat-draining rivers convey terrestrial organic carbon to the estuaries. We found evidence that a large fraction of this carbon is respired. The median p CO 2 in the estuaries ranged between 618 and 5064 μatm with little seasonal variation. CO 2 fluxes were determined with a floating chamber and estimated to amount to 14–272 mol m −2 yr −1 , which is high compared to other studies from tropical and subtropical sites. In contrast, CO concentrations and fluxes were relatively moderate (0.3–1.4 nmol L −1 and 0.8–1.9 mmol m −2 yr −1 ) if compared to published data for oceanic or upwelling systems. We attributed this to the large amounts of suspended matter (4–5004 mg L −1 ), limiting the light penetration depth. However, the diurnal variation of CO suggests that it is photochemically produced, implying that photodegradation might play a role for the removal of DOM from the estuary as well. We concluded that unlike smaller peat-draining tributaries, which tend to transport most carbon downstream, estuaries in this region function as an efficient filter for organic carbon and release large amounts of CO 2 to the atmosphere. The Lupar and Saribas mid-estuaries release 0.4 ± 0.2 Tg C yr −1 , which corresponds to approximately 80% of the emissions from the aquatic systems in these two catchments.

Description: The influence of human activity on the biosphere is increasing. While direct damage (e.g. habitat destruction) is relatively well understood, many activities affect wildlife in less apparent ways. Here we investigate how anthropogenic noise impairs foraging, which has direct consequences for animal survival and reproductive success. Noise can disturb foraging via several mechanisms that may operate simultaneously, and thus their effects could not be disentangled hitherto. We developed a diagnostic framework that can be applied to identify the potential mechanisms of disturbance in any species capable of detecting the noise. We tested this framework using Daubenton's bats, which find prey by echolocation. We found that traffic noise reduced foraging efficiency in most bats. Unexpectedly, this effect was present even if the playback noise did not overlap in frequency with the prey echoes. Neither overlapping nor non-overlapping noise influenced the search effort required for a successful prey capture. Hence, noise did not mask prey echoes or reduce the attention of bats. Instead, noise acted as an aversive stimulus that caused avoidance response, thereby reducing foraging efficiency. We conclude that conservation policies may seriously underestimate numbers of species affected and the multilevel effects on animal fitness, if the mechanisms of disturbance are not considered. This article is protected by copyright. All rights reserved.

Description: Carbonate saturation state of surface waters in the Ross Sea and Southern Ocean: controls and implications for the onset of aragonite undersaturation Biogeosciences Discussions, 12, 8429-8465, 2015 Author(s): H. B. DeJong, R. B. Dunbar, D. A. Mucciarone, and D. A. Koweek Predicting when surface waters of the Ross Sea and Southern Ocean will become undersaturated with respect to biogenic carbonate minerals is challenging in part due to the lack of baseline high resolution carbon system data. Here we present ~ 1700 surface total alkalinity measurements from the Ross Sea and along a transect between the Ross Sea and southern Chile from the austral autumn (February–March 2013). We calculate the saturation state of aragonite (Ω Ar ) and calcite (Ω Ca ) using measured total alkalinity and p CO 2 . In the Ross Sea and south of the Polar Front, variability in carbonate saturation state (Ω) is mainly driven by algal photosynthesis. Freshwater dilution and calcification have minimal influence on Ω variability. We estimate an early spring surface water Ω Ar value of ~ 1.2 for the Ross Sea using a total alkalinity–salinity relationship and historical p CO 2 measurements. Our results suggest that the Ross Sea is not likely to become undersaturated with respect to aragonite until the year 2070.

Description: Biodegradability of dissolved organic carbon in permafrost soils and waterways: a meta-analysis Biogeosciences Discussions, 12, 8353-8393, 2015 Author(s): J. E. Vonk, S. E. Tank, P. J. Mann, R. G. M. Spencer, C. C. Treat, R. G. Striegl, B. W. Abbott, and K. P. Wickland As Arctic regions warm, the large organic carbon pool stored in permafrost becomes increasingly vulnerable to thaw and decomposition. The transfer of newly mobilized carbon to the atmosphere and its potential influence upon climate change will largely depend on the reactivity and subsequent fate of carbon delivered to aquatic ecosystems. Dissolved organic carbon (DOC) is a key regulator of aquatic metabolism and its biodegradability will determine the extent and rate of carbon release from aquatic ecosystems to the atmosphere. Knowledge of the mechanistic controls on DOC biodegradability is however currently poor due to a scarcity of long-term data sets, limited spatial coverage of available data, and methodological diversity. Here, we performed parallel biodegradable DOC (BDOC) experiments at six Arctic sites (16 experiments) using a standardized incubation protocol to examine the effect of methodological differences used as common practice in the literature. We further synthesized results from 14 aquatic and soil leachate BDOC studies from across the circum–arctic permafrost region to examine pan-Arctic trends in BDOC. An increasing extent of permafrost across the landscape resulted in higher BDOC losses in both soil and aquatic systems. We hypothesize that the unique composition of permafrost-derived DOC combined with limited prior microbial processing due to low soil temperature and relatively shorter flow path lengths and transport times, resulted in higher overall terrestrial and freshwater BDOC loss. Additionally, we found that the fraction of BDOC decreased moving down the fluvial network in continuous permafrost regions, i.e. from streams to large rivers, suggesting that highly biodegradable DOC is lost in headwater streams. We also observed a seasonal (January–December) decrease in BDOC losses in large streams and rivers, but no apparent change in smaller streams and soil leachates. We attribute this seasonal change to a combination of factors including shifts in carbon source, changing DOC residence time related to increasing thaw-depth, increasing water temperatures later in the summer, as well as decreasing hydrologic connectivity between soils and surface water as the seasons progress. Our results suggest that future, climate warming-induced shifts of continuous permafrost into discontinuous permafrost regions could affect the degradation potential of thaw-released DOC as well as its variability throughout the Arctic summer. We lastly present a recommended standardized BDOC protocol to facilitate the comparison of future work and improve our knowledge of processing and transport of DOC in a changing Arctic.

Description: Ideas and perspectives: use of tree-ring width as an indicator of tree growth Biogeosciences Discussions, 12, 8341-8352, 2015 Author(s): R. A. Hember, W. A. Kurz, and J. M. Metsaranta By taking core samples, dendroecological studies can reconstruct radial growth over the lifespan of a tree, providing a valuable way to estimate the sensitivity of tree productivity to environmental change. With increasing prevalence of such studies in global change science, it is worth cautioning that the incremental growth rate of a sub-dimension of a tree organ, such as annual ring width ( w ), does not respond to extrinsic perturbations with the same relative magnitude as the primary production of that organ. For example, if an extrinsic force causes a two-fold increase in the absolute growth rate of stemwood biomass (AGR), it should only theoretically translate into a 1.3-fold increase in w , or a 1.7-fold increase in basal area increment (BAI), when a 2:1 ratio in resource allocation to lateral and apical meristems is assumed. Expressing the magnitude of a response in relative terms does not, therefore, provide a valid means of comparing estimates of relative growth derived from measurement of different dimensional traits of the tree. From our perspective, enough conformity to facilitate comparison of environmental sensitivity across studies of tree growth is warranted so we emphasize the benefit of dimension analysis to transform measurements of w and BAI into the AGR. Although conversion to AGR introduces an error from the use of allometric equations, the approach is widely accepted in mainstream ecology and global change science at least partially because it avoids discrepancies in response magnitude owing to differences in dimension. Studies of organ elongation have historically provided invaluable information, yet it must be recognized that they systematically underestimate the response magnitude of primary production, and confound comparisons of growth sensitivity between many dendroecological studies that focus on w and studies of primary production.

Description: Understanding the responses of lake systems to past climate change and human activity is critical for assessing and predicting the fate of lake carbon (C) in the future. In this study we synthesized records of the sediment accumulation from 82 lakes and of C sequestration from 58 lakes with direct organic C measurements throughout China. We also identified the controlling factors of the long-term sediment and C accumulation dynamics in these lakes during the past 12 ka (1 ka = 1000 cal yr BP). Our results indicated an overall increasing trend of sediment and C accumulation since 12 ka, with an accumulation peak in the last couple of millennia for all lakes in China, corresponding to terrestrial organic matter input due to land use change. The Holocene lake sediment accumulation rate (SAR) and C accumulation rate (CAR) averaged (Mean ± SE) 0.47 ± 0.05 mm yr -1 and 7.7 ± 1.4 g C m -2 yr -1 in China, respectively, comparable to the previous estimates for boreal and temperate regions. The SAR for lakes in the East Plain of subtropical China (1.05 ± 0.28 mm yr -1 ) was higher than those in other regions ( P 〈 0.05). However, CAR did not vary significantly among regions. Overall, the variability and history of climate and anthropogenic interference regulated the temporal and spatial dynamics of sediment and C sequestration for lakes in China. We estimated the total amount of C burial in lakes of China as 8.0 ± 1.0 Pg C. This first estimation of total C storage and dynamics in lakes of China confirms the importance of lakes in land C budget in monsoon-influenced regions. This article is protected by copyright. All rights reserved.

Description: Spatial variability of diploptene δ 13 C values in thermokarst lakes: the potential to analyse the complexity of lacustrine methane cycling Biogeosciences Discussions, 12, 12157-12189, 2015 Author(s): K. L. Davies, R. D. Pancost, M. E. Edwards, K. M. Walter Anthony, P. G. Langdon, and L. Chaves Torres Cryospheric changes in northern high latitudes are linked to significant greenhouse gas flux to the atmosphere, including methane release that originates from organic matter decomposition in thermokarst lakes. The connections between methane production in sediments, transport pathways and oxidation are not well understood and this has implications for any attempts to reconstruct methane production from sedimentary archives. We assessed methane oxidation as represented by methane oxidising bacteria across the surface sediments of two interior Alaska thermokarst lakes in relation to methane emissions via ebullition (bubbling). The bacterial biomarker diploptene was present and had low δ 13 C values (lower than −38 ‰) in all sediments analysed, suggesting methane oxidation was widespread. The most δ 13 C-depleted diploptene was found in the area of highest methane ebullition emissions in Ace Lake (δ 13 C diplotene values between −68.2 and −50.1 ‰), suggesting a positive link between methane production, oxidation, and emission in this area. In contrast, significantly less depleted diploptene δ 13 C values (between −42.9 and −38.8 ‰) were found in the area of highest methane ebullition emissions in Smith Lake. Lower δ 13 C values of diploptene were found in the central area of Smith Lake (between −56.8 and −46.9 ‰), where methane ebullition rates are low but methane diffusion appears high. Using δ 13 C-diplotene as a proxy for methane oxidation activity, we suggest the observed differences in methane oxidation levels among sites within the two lakes could be linked to differences in source area of methane production (e.g. age and type of organic carbon) and bathymetry as it relates to varying oxycline depths and changing pressure gradients. As a result, methane oxidation is highly lake-dependent. The diploptene δ 13 C values also highlight strong within-lake variability, implying that single-value, down-core records of hopanoid isotopic signatures are not secure indicators of changing methane flux at the whole-lake scale.

Description: Metagenomic analyses of the late Pleistocene permafrost – additional tools for reconstruction of environmental conditions Biogeosciences Discussions, 12, 12091-12119, 2015 Author(s): E. Rivkina, L. Petrovskaya, T. Vishnivetskaya, K. Krivushin, L. Shmakova, M. Tutukina, A. Meyers, and F. Kondrashov A comparative analysis of the metagenomes from two 30 000 year-old permafrost samples, one of lake-alluvial origin and the other from late Pleistocene Ice Complex sediments, revealed significant differences within microbial communities. The late Pleistocene Ice Complex sediments (which have been characterized by the absence of methane with lower values of redox-potential and Fe 2+ content) showed both a low abundance of methanogenic archaea and enzymes from the carbon, nitrogen and sulfur cycles. The metagenomic and geochemical analyses described in the paper provide evidence that the formation of the late Pleistocene Ice Complex sediments likely took place under much more aerobic conditions than lake-alluvial sediments.

Description: Nonlinear thermal and moisture dynamics of high Arctic wetland polygons following permafrost disturbance Biogeosciences Discussions, 12, 11797-11831, 2015 Author(s): E. Godin, D. Fortier, and E. Lévesque Low-centre polygonal terrain developing within gentle sloping surfaces and lowlands in the high Arctic have a potential to retain snowmelt water in their bowl-shaped centre and as such are considered high latitude wetlands. Such wetlands in the continuous permafrost regions have an important ecological role in an otherwise generally arid region. In the valley of the glacier C-79 on Bylot Island (Nunavut, Canada), thermal erosion gullies are rapidly eroding the permafrost along ice wedges affecting the integrity of the polygons by breaching and collapsing the surrounding rims. While intact polygons were characterized by a relative homogeneity (topography, snow cover, maximum active layer thaw depth, ground moisture content, vegetation cover), eroded polygons had a non-linear response for the same elements following their perturbation. The heterogeneous nature of disturbed terrains impacts active layer thickness, ground ice aggradation in the upper portion of permafrost, soil moisture and vegetation dynamics, carbon storage and terrestrial green-house gas emissions.

Description: Controls on microalgal community structures in cryoconite holes upon high Arctic glaciers, Svalbard Biogeosciences Discussions, 12, 11751-11795, 2015 Author(s): T. R. Vonnahme, M. Devetter, J. D. Žárský, M. Šabacká, and J. Elster Glaciers are known to harbor surprisingly complex ecosystems. On their surface, distinct cylindrical holes filled with meltwater and sediments are considered as hot spots for microbial life. The present paper addresses possible biological interactions within the community of prokaryotic cyanobacteria and eukaryotic microalgae (microalgae) and relations to their potential grazers, additional to their environmental controls. Svalbard glaciers with substantial allochthonous input of material from local sources reveal high microalgal densities. Small valley glaciers with high sediment coverages and high impact of birds show high biomasses and support a high biological diversity. Invertebrate grazer densities do not show any significant negative correlation with microalgal abundances, but a positive correlation with eukaryotic microalgae. Most microalgae found in this study form large colonies ( 〈 10 cells, or 〉 25 μm), which may protect them against invertebrate grazing. This finding rather indicates grazing as a positive control on eukaryotic microalgae by nutrient recycling. Density differences between the eukaryotic microalgae and prokaryotic cyanobacteria and their high distinction in RDA and PCA analyses indicate that these two groups are in strong contrast. Eukaryotic microalgae occurred mainly in unstable cryoconite holes with high sediment loads, high N : P ratios, and a high impact of bird guano, as a proxy for nutrients. In these environments autochthonous nitrogen fixation appears to be negligible. Selective wind transport of Oscillatoriales via soil and dust particles is proposed to explain their dominance in cryoconites further away from the glacier margins. We propose that, for the studied glaciers, nutrient levels related to recycling of limiting nutrients is the main factor driving variation in the community structure of microalgae and grazers.

Description: Thermo-erosion gullies boost the transition from wet to mesic vegetation Biogeosciences Discussions, 12, 12191-12228, 2015 Author(s): N. Perreault, E. Lévesque, D. Fortier, and L. J. Lamarque Continuous permafrost zones with well-developed polygonal ice-wedge networks are particularly vulnerable to climate change. Thermo-mechanical erosion can initiate the development of gullies that lead to substantial drainage of adjacent wet habitats. How vegetation responds to this particular disturbance is currently unknown but has the potential to strongly disrupt function and structure of Arctic ecosystems. Focusing on three major gullies of Bylot Island, Nunavut, we aimed at estimating the effects of thermo-erosion processes in shaping plant community changes. Over two years, we explored the influence of environmental factors on plant species richness, abundance and biomass studying 197 polygons that covered the whole transition from intact wet to disturbed and mesic habitats. While gullying decreased soil moisture by 40 % and thaw front depth by 10 cm in breached polygons, we observed a gradual vegetation shift within five to ten years with mesic habitat plant species such as Arctagrostis latifolia and Salix arctica replacing wet habitat dominant Carex aquatilis and Dupontia fisheri . This transition was accompanied by a five time decrease in graminoid above-ground biomass in mesic sites. Our results illustrate that wetlands are highly vulnerable to thermo-erosion processes that may rapidly promote the decrease of food availability for herbivores and reduce methane emissions of Arctic ecosystems.

Description: Effects of dust additions on phytoplankton growth and DMS production in high CO 2 northeast Pacific HNLC waters Biogeosciences Discussions, 12, 12281-12319, 2015 Author(s): J. Mélançon, M. Levasseur, M. Lizotte, M. Scarratt, J.-É. Tremblay, P. Tortell, G.-P. Yang, G.-Y. Shi, H.-W. Gao, D. M. Semeniuk, M. Robert, M. Arychuk, K. Johnson, N. Sutherland, M. Davelaar, N. Nemcek, A. Peña, and W. Richardson Ocean acidification (OA) is likely to have an effect on the fertilizing potential of desert dust in high-nutrient, low-chlorophyll oceanic regions, either by modifying Fe speciation and bioavailability, or by altering phytoplankton Fe requirements and acquisition. To address this issue, short incubations (4 days) of northeast subarctic Pacific waters enriched with either FeSO 4 or dust, and set at pH 8.0 (in situ) and 7.8 were conducted in August 2010. We assessed the impact of a decrease in pH on dissolved Fe concentration, phytoplankton biomass, taxonomy and productivity, and the production of dimethylsulfide (DMS) and its algal precursor dimethylsulfoniopropionate (DMSP). Chlorophyll a (chl a ) remained unchanged in the controls and doubled in both the FeSO 4 -enriched and dust-enriched incubations, confirming the Fe-limited status of the plankton assemblage during the experiment. In the acidified treatments, a significant reduction (by 16–38 %) of the final concentration of chl a was measured compared to their non-acidified counterparts, and a 15 % reduction in particulate organic carbon (POC) concentration was measured in the dust-enriched acidified treatment compared to the dust-enriched non-acidified treatment. FeSO 4 and dust additions had a fertilizing effect mainly on diatoms and cyanobacteria. Lowering the pH affected mostly the haptophytes, but pelagophyte concentrations were also reduced in some acidified treatments. Acidification did not significantly alter DMSP and DMS concentrations. These results show that dust deposition events in a low-pH iron-limited Northeast subarctic Pacific are likely to stimulate phytoplankton growth to a lesser extent than in today's ocean during the few days following fertilization and point to a low initial sensitivity of the DMSP and DMS dynamics to OA.

Description: Projected climate change impacts on North Sea and Baltic Sea: CMIP3 and CMIP5 model based scenarios Biogeosciences Discussions, 12, 12229-12279, 2015 Author(s): D. Pushpadas, C. Schrum, and U. Daewel Climate change impacts on the marine biogeochemistry and lower trophic level dynamics in the North Sea and Baltic Sea have been assessed using regional downscaling in a number of recent studies. However, most of these where only forced by physical conditions from Global Climate Models (GCMs) and regional downscaling considering the climate change impact on oceanic nutrient conditions from Global Earth System Models (ESMs) are rare and so far solely based on CMIP3-generation climate models. The few studies published show a large range in projected future primary production and hydrodynamic condition. With the addition of CMIP5 models and scenarios, the demand to explore the uncertainty in regional climate change projections increased. Moreover, the question arises how projections based on CMIP5-generation models compare to earlier projections and multi-model ensembles comprising both AR4 and AR5 generation forcing models. Here, we investigated the potential future climate change impacts to the North Sea and the Baltic Sea ecosystem using a coherent regional downscaling strategy based on the regional coupled bio-physical model ECOSMO. ECOSMO was forced by output from different ESMs from both CMIP3 and CMIP5 models. Multi-model ensembles using CMIP3/A1B and CMIP5/RCP4.5 scenarios are examined, where the selected CMIP5 models are the successors of the chosen CMIP3 models. Comparing projected changes with the present day reference condition, all these simulations predicted an increase in Sea Surface Temperature (SST) in both North Sea and Baltic Sea, reduction in sea ice in the Baltic, decrease in primary production in the North Sea and an increase in primary production in the Baltic Sea. Despite these largely consistent results on the direction of the projected changes, our results revealed a broad range in the amplitude of projected climate change impacts. Our study strengthens the claim that the choice of the ESM is a major factor for regional climate projections. The change in oceanic nutrient input appeared to be the major driver for the projected changes in North Sea primary production. Assessing the spread in ensemble groups, we found that there is for the North Sea a significant reduction in the spread of projected changes among CMIP5 forced model simulations compared to those forced by CMIP3 ESMs, except for salinity. The latter was due to an unexpected salinification observed in one of the CMIP5 model while all other models exhibit freshening in the future. However, for the Baltic Sea substantial differences in inter-model variability in projected climate change impact to primary production is lacking.

Description: There is concern that food insecurity will increase in southern Africa due to climate change. We quantified the response of maize yield to projected climate change and to three key management options – planting date, fertilizer use and cultivar choice – using the crop simulation model APSIM at two contrasting sites in Zimbabwe. Three climate periods up to 2100 were selected to cover both near- and long-term climates. Future climate data under two radiative forcing scenarios were generated from five Global Circulation Models. The temperature is projected to increase significantly in Zimbabwe by 2100 with no significant change in mean annual total rainfall. When planting before mid-December with a high fertilizer rate, the simulated average grain yield for all three maize cultivars declined by 13% for the periods 2010-2039 and 2040-2069, and by 20% for 2070-2099 compared with the baseline climate, under low radiative forcing. Larger declines in yield of up to 32% were predicted for 2070-2099 with high radiative forcing. Despite differences in annual rainfall, similar trends in yield changes were observed for the two sites studied, Hwedza and Makoni. The yield response to delay in planting was non-linear. Fertilizer increased yield significantly under both baseline and future climates. The response of maize to mineral nitrogen decreased with progressing climate change, implying a decrease in the optimal fertilizer rate in the future. Our results suggest that in the near future improved crop and soil fertility management will remain important for enhanced maize yield. Towards the end of the 21st Century, however, none of the farm management options tested in the study can avoid large yield losses in southern Africa due to climate change. There is a need to transform the current cropping systems of southern Africa to offset the negative impacts of climate change. This article is protected by copyright. All rights reserved.

Description: Dissolved organic carbon lability and stable isotope shifts during microbial decomposition in a tropical river system Biogeosciences Discussions, 12, 12761-12782, 2015 Author(s): N. Geeraert, F. O. Omengo, G. Govers, and S. Bouillon A significant amount of carbon is transported to the ocean as dissolved organic carbon (DOC) in rivers. During transport, it can be transformed through microbial consumption and photochemical oxidation. In dark incubation experiments with water from the Tana River, Kenya, we examined the consumption of DOC through microbial decomposition and the associated change in its carbon stable isotope composition (δ 13 C). In 15 of the 18 incubations, DOC concentrations decreased significantly by 10 to 60 %, with most of the decomposition taking place within the first 24–48 h. After 8 days, the remaining DOC was up to 3 ‰ more depleted in 13 C compared with the initial pool, and the change in δ 13 C correlated strongly with the fraction of DOC remaining. We propose that the shift in δ 13 C is consistent with greater microbial lability of DOC originating from herbaceous C 4 vegetation than DOC derived from woody C 3 vegetation in the semi-arid lower Tana. The findings complement earlier data that riverine C sources do not necessarily reflect their proportion in the catchment: besides spatial distribution, also processing within the river can further influence the riverine δ 13 C.

Description: Ocean dynamic processes causing spatially heterogeneous distribution of sedimentary caesium-137 massively released from the Fukushima Dai-ichi Nuclear Power Plant Biogeosciences Discussions, 12, 12713-12759, 2015 Author(s): H. Higashi, Y. Morino, N. Furuichi, and T. Ohara Massive amounts of anthropogenic radiocaesium 137 Cs that was released into the environment by the Fukushima Dai-ichi Nuclear Power Plant accident on March 2011 are widely known to have extensively migrated to Pacific oceanic sediment off of east Japan. Several recent reports have stated that the sedimentary 137 Cs is now stable with a remarkably heterogeneous distribution. The present study elucidates ocean dynamic processes causing this heterogeneous sedimentary 137 Cs distribution in and around the shelf off Fukushima and adjacent prefectures. We performed a numerical simulation of oceanic 137 Cs behaviour for about 10 months after the accident, using a comprehensive dynamic model involving advection–diffusion transport in seawater, adsorption and desorption to and from particulate matter, sedimentation and suspension on and from the bottom, and vertical diffusion transport in the sediment. A notable simulated result was that the sedimentary 137 Cs significantly accumulated in a swath just offshore of the shelf break (along the 50–100 m isobath) as in recent observations, although the seabed in the entire simulation domain was assumed to have ideal properties such as identical bulk density, uniform porosity, and aggregation of particles with a single grain diameter. This result indicated that the heterogeneous sedimentary 137 Cs distribution was not necessarily a result of the spatial distribution of 137 Cs sediment adsorptivity. The present simulation suggests that the shape of the swath is mainly associated with spatiotemporal variation between bottom shear stress in the shallow shelf ( 〈 50 m depths) and that offshore of the shelf break. In a large part of the shallow shelf, the simulation indicated that strong bottom friction suspending particulate matter from the seabed frequently occurred via a periodic spring tide about every 2 weeks and via occasional strong wind. The sedimentary 137 Cs thereby could hardly stay on the surface of the seabed with the result that the simulated sediment-surface 137 Cs activity tended to decrease steadily for a long term after the initial 137 Cs migration. By contrast, in the offshore region, neither the spring tide nor the strong wind caused bottom disturbance. Hence, the particulate matter incorporated with 137 Cs, which was horizontally transported from the adjacent shallow shelf, readily settled and remained on the surface of the sediment just offshore of the shelf break. The present simulation also clearly demonstrated that the bottom disturbance influenced the sedimentary 137 Cs distributions not only horizontally but also vertically. In particular, within a part of the near-shore off the nuclear power plant, the simulation indicated that large amounts of the sedimentary 137 Cs were present in both upper and deeper sediments. As a result, total sedimentary 137 Cs in the entire simulation domain (1.4 x 10 5 km 2 ) at the end of 2011 was 3.2 x 10 15 Bq, more than 10 times that in previous estimates using samples of upper sediments.

Description: Soil N 2 O and NO emissions from land use and land-use change in the tropics and subtropics: a meta-analysis Biogeosciences Discussions, 12, 12783-12821, 2015 Author(s): J. van Lent, K. Hergoualc'h, and L. V. Verchot Deforestation and forest degradation in the tropics may substantially alter soil N-oxide emissions. It is particularly relevant to accurately quantify those changes to properly account for them in a REDD+ climate change mitigation scheme that provides financial incentives to reduce the emissions. With this study we provide updated land use (LU)-based emission rates (103 studies, 387 N 2 O and 111 NO case studies), determine the trend and magnitude of flux changes with land-use change (LUC) using a meta-analysis approach (43 studies, 132 N 2 O and 37 NO cases) and evaluate biophysical drivers of N 2 O and NO emissions and emission changes for the tropics. The average N 2 O and NO emissions in intact upland tropical forest amounted to 2.0 ± 0.2 ( n = 88) and 1.7 ± 0.5 ( n = 36) kg N ha −1 yr −1 , respectively. In agricultural soils annual N 2 O emissions were exponentially related to N fertilization rates and average water-filled pore space (WFPS) whereas in non-agricultural sites a Gaussian response to WFPS fit better the observed NO and N 2 O emissions. The sum of soil N 2 O and NO fluxes and the ratio of N 2 O to NO increased exponentially and significantly with increasing nitrogen availability (expressed as NO 3 − /[NO 3 − +NH 4 + ]) and WFPS, respectively; following the conceptual Hole-In-the-Pipe model. Nitrous and nitric oxide fluxes did not overall increase significantly as a result of LUC (Hedges's d of 0.11 ± 0.11 and 0.16 ± 0.19, respectively), however individual LUC trajectories or practices did. Nitrous oxide fluxes increased significantly after intact upland forest conversion to croplands (Hedges's d = 0.78 ± 0.24) and NO increased significantly following the conversion of low forest cover (secondary forest younger than 30 years, woodlands, shrublands) (Hedges's d of 0.44 ± 0.13). Forest conversion to fertilized systems significantly and highly raised both N 2 O and NO emission rates (Hedges's d of 1.03 ± 0.23 and 0.52 ± 0.09, respectively). Changes in nitrogen availability and WFPS were the main factors explaining changes in N 2 O emissions following LUC, therefore it is important that experimental designs monitor their spatio-temporal variation. Gaps in the literature on N oxide fluxes included geographical gaps (Africa, Oceania) and LU gaps (degraded forest, wetland (notably peat) forest, oil palm plantation and soy cultivation).

Description: Phytoplankton calcification as an effective mechanism to prevent cellular calcium poisoning Biogeosciences Discussions, 12, 12691-12712, 2015 Author(s): M. N. Müller, J. Barcelos e Ramos, K. G. Schulz, U. Riebesell, J. Kaźmierczak, F. Gallo, L. Mackinder, Y. Li, P. N. Nesterenko, T. W. Trull, and G. M. Hallegraeff Marine phytoplankton has developed the remarkable ability to tightly regulate the concentration of free calcium ions in the intracellular cytosol at a level of ~ 0.1 μmol L −1 in the presence of seawater Ca 2+ concentrations of 10 mmol L −1 . The low cytosolic calcium ion concentration is of utmost importance for proper cell signalling function. While the regulatory mechanisms responsible for the tight control of intracellular Ca 2+ concentration are not completely understood, phytoplankton taxonomic groups appear to have evolved different strategies, which may affect their ability to cope with changes in seawater Ca 2+ concentrations in their environment on geological time scales. For example, the Cretaceous (145 to 66 Ma ago), an era known for the high abundance of coccolithophores and the production of enormous calcium carbonate deposits, exhibited seawater calcium concentrations up to four times present-day levels. We show that calcifying coccolithophore species ( Emiliania huxleyi , Gephyrocapsa oceanica and Coccolithus braarudii ) are able to maintain their relative fitness (in terms of growth rate and photosynthesis) at simulated Cretaceous seawater calcium concentrations, whereas these rates are severely reduced under these conditions in some non-calcareous phytoplankton species ( Chaetoceros sp., Ceratoneis closterium and Heterosigma akashiwo ). Most notably, this also applies to a non-calcifying strain of E. huxleyi which displays a calcium-sensitivity similar to the non-calcareous species. We hypothesize that the process of calcification in coccolithophores provides an efficient mechanism to prevent cellular calcium poisoning and thereby offered a potential key evolutionary advantage, responsible for the proliferation of coccolithophores during times of high seawater calcium concentrations.

Description: EUROSPEC: at the interface between remote sensing and ecosystem CO 2 flux measurements in Europe Biogeosciences Discussions, 12, 13069-13121, 2015 Author(s): A. Porcar-Castell, A. Mac Arthur, M. Rossini, L. Eklundh, J. Pacheco-Labrador, K. Anderson, M. Balzarolo, M. P. Martín, H. Jin, E. Tomelleri, S. Cerasoli, K. Sakowska, A. Hueni, T. Julitta, C. J. Nichol, and L. Vescovo Resolving the spatial and temporal dynamics of gross primary productivity (GPP) of terrestrial ecosystems across different scales remains a challenge. Remote sensing is regarded as the solution to upscale point observations conducted at the ecosystem level, using the eddy covariance (EC) technique, to the landscape and global levels. In addition to traditional vegetation indices, the photochemical reflectance index (PRI) and the emission of solar-induced chlorophyll fluorescence (SIF), now measurable from space, provide a new range of opportunities to monitor the global carbon cycle using remote sensing. However, the scale mismatch between EC observations and the much coarser satellite-derived data complicates the integration of the two sources of data. The solution is to establish a network of in situ spectral measurements that can act as bridge between EC measurements and remote sensing data. In situ spectral measurements have been already conducted for many years at EC sites, but using variable instrumentation, setups, and measurement standards. In Europe in particular, in situ spectral measurements remain highly heterogeneous. The goal of EUROSPEC Cost Action ES0930 was to promote the development of common measuring protocols and new instruments towards establishing best practices and standardization of in situ spectral measurements. In this review we describe the background and main tradeoffs of in situ spectral measurements, review the main results of EUROSPEC Cost Action, and discuss the future challenges and opportunities of in situ spectral measurements for improved estimation of local and global carbon cycle.

Description: Improved end-member characterization of modern organic matter pools in the Ohrid Basin (Albania, Macedonia) and evaluation of new palaeoenvironmental proxies Biogeosciences Discussions, 12, 12975-13039, 2015 Author(s): J. Holtvoeth, D. Rushworth, A. Imeri, M. Cara, H. Vogel, T. Wagner, and G. A. Wolff We present elemental, lipid biomarker and compound-specific isotope (δ 13 C, δ 2 H) data for soils and leaf litter collected in the catchment of Lake Ohrid (Albania, Macedonia), as well as macrophytes, particulate organic matter and sediments from the lake itself. Lake Ohrid provides an outstanding archive of continental environmental change of at least 1.2 M years and the purpose of our study is to ground truth organic geochemical proxies that we developed in order to study past changes in the terrestrial biome. We show that soils dominate the lipid signal of the lake sediments rather than the vegetation or aquatic biomass, while compound-specific isotopes (δ 13 C, δ 2 H) determined for n-alkanoic acids confirm a dominant terrestrial source of organic matter to the lake. There is a strong imprint of suberin monomers on the composition of total lipid extracts and chain-length distributions of n-alkanoic acids, n-alcohols, ω-hydroxy acids and α,ω-dicarboxylic acids. Our end-member survey identifies that ratios of mid-chain length suberin-derived to long-chain length cuticular-derived alkyl compounds as well as their average chain length distributions can be used as new molecular proxies of organic matter sources to the lake. We tested these for the 8.2 ka event, a pronounced and widespread Holocene climate fluctuation. In SE Europe climate became drier and cooler in response to the event, as is clearly recognizable in the carbonate and organic carbon records of Lake Ohrid sediments. Our new proxies indicate biome modification in response to hydrological changes, identifying two phases of increased soil OM supply, first from topsoils and then from mineral soils. Our study demonstrates that geochemical fingerprinting of terrestrial OM should focus on the main lipid sources, rather than the living biomass. Both can exhibit climate-controlled variability, but are generally not identical.

Description: The root economics spectrum: divergence of absorptive root strategies with root diameter Biogeosciences Discussions, 12, 13041-13067, 2015 Author(s): D. Kong, J. Wang, P. Kardol, H. Wu, H. Zeng, X. Deng, and Y. Deng Plant roots usually vary along a dominant ecological axis, the root economics spectrum (RES), depicting a tradeoff between resource acquisition and conservation. For absorptive roots, which are mainly responsible for resource acquisition, we hypothesized that root strategies as predicted from the RES shift with increasing root diameter. To test this hypothesis, we used seven contrasting plant species for which we separated absorptive roots into two categories: thin roots ( 〈 247 μm diameter) and thick roots. For each category, we analyzed a~range of root traits closely related to resource acquisition and conservation, including root tissue density, carbon (C) and nitrogen (N) fractions as well as root anatomical traits. The results showed that trait relationships for thin absorptive roots followed the expectations from the RES while no clear trait relationships were found in support of the RES for thick absorptive roots. Our results suggest divergence of absorptive root strategies in relation to root diameter, which runs against a single economics spectrum for absorptive roots.

Description: Millennial changes in North Atlantic oxygen concentrations Biogeosciences Discussions, 12, 12947-12973, 2015 Author(s): B. A. A. Hoogakker, D. J. R. Thornalley, and S. Barker Glacial–interglacial changes in bottom water oxygen concentrations [O 2 ] in the deep Northeast Atlantic have been linked to decreased ventilation relating to changes in ocean circulation and the biological pump (Hoogakker et al., 2015). In this paper we discuss seawater [O 2 ] changes in relation to millennial climate oscillations in the North Atlantic ocean over the last glacial cycle, using bottom water [O 2 ] reconstructions from 2 cores: (1) MD95-2042 from the deep northeast Atlantic (Hoogakker et al., 2015), and (2) ODP 1055 from the intermediate northwest Atlantic. Deep northeast Atlantic core MD95-2042 shows decreased bottom water [O 2 ] during millennial scale cool events, with lowest bottom water [O 2 ] of 170, 144, and 166 ± 17 μmol kg −1 during Heinrich ice rafting events H6, H4 and H1. Importantly, at intermediate core ODP 1055 bottom water [O 2 ] was lower during parts of Marine Isotope Stage 4 and millennial cool events, with lowest values of 179 and 194 μmol kg −1 recorded during millennial cool events C21 and a cool event following Dansgaard–Oeschger event 19. Our reconstructions agree with previous model simulations suggesting that glacial cold events may be associated with lower seawater [O 2 ] across the North Atlantic below ~1 km (Schmittner et al., 2007), although in our reconstructions the changes are less dramatic. The decreases in bottom water [O 2 ] during North Atlantic Heinrich events and earlier cold events at the deep site can be linked to water mass changes in relation to ocean circulation changes, and possibly productivity changes. At the intermediate depth site a strong North Atlantic Intermediate Water cell precludes water mass changes as a cause for decreased bottom water [O 2 ]. Instead we propose that the lower bottom [O 2 ] there can be linked to productivity changes through increased export of organic material from the surface ocean.

Description: The carbon cycle in Mexico: past, present and future of C stocks and fluxes Biogeosciences Discussions, 12, 12501-12541, 2015 Author(s): G. Murray-Tortarolo, P. Friedlingstein, S. Sitch, V. J. Jaramillo, F. Murguía-Flores, A. Anav, Y. Liu, A. Arneth, A. Arvanitis, A. Harper, A. Jain, E. Kato, C. Koven, B. Poulter, B. D. Stocker, A. Wiltshire, S. Zaehle, and N. Zeng We modelled the carbon (C) cycle in Mexico with a process-based approach. We used different available products (satellite data, field measurements, models and flux towers) to estimate C stocks and fluxes in the country at three different time frames: present (defined as the period 2000–2005), the past century (1901–2000) and the remainder of this century (2010–2100). Our estimate of the gross primary productivity (GPP) for the country was 2137 ± 1023 Tg C yr −1 and a total C stock of 34 506 ± 7483 Tg C, with 20 347 ± 4622 Pg C in vegetation and 14 159 ± 3861 in the soil. Contrary to other current estimates for recent decades, our results showed that Mexico was a C sink over the period 1990–2009 (+31 Tg C yr −1 ) and that C accumulation over the last century amounted to 1210 ± 1040 Tg C. We attributed this sink to the CO 2 fertilization effect on GPP, which led to an increase of 3408 ± 1060 Tg C, while both climate and land use reduced the country C stocks by −458 ± 1001 and −1740 ± 878 Tg C, respectively. Under different future scenarios the C sink will likely continue over 21st century, with decreasing C uptake as the climate forcing becomes more extreme. Our work provides valuable insights on relevant driving processes of the C-cycle such as the role of drought in marginal lands (e.g. grasslands and shrublands) and the impact of climate change on the mean residence time of C in tropical ecosystems.

Description: Influence of timing of sea ice retreat on phytoplankton size during marginal ice zone bloom period in the Chukchi and Bering shelves Biogeosciences Discussions, 12, 12611-12651, 2015 Author(s): A. Fujiwara, T. Hirawake, K. Suzuki, L. Eisner, I. Imai, S. Nishino, T. Kikuchi, and S. I. Saitoh Timing of sea ice retreat (TSR) as well as cell size of primary producers (i.e., phytoplankton) plays crucial roles in seasonally ice-covered marine ecosystem. Thus, it is important to monitor the temporal and spatial distribution of phytoplankton community size structure. Prior to this study, an ocean color algorithm has been developed to derive phytoplankton size index F L , which is defined as the ratio of chlorophyll a derived from the cells larger than 5 μm to the total chl a using satellite remote sensing for the Chukchi and Bering shelves. Using this method, we analyzed pixel-by-pixel relationships between F L during marginal ice zone (MIZ) bloom period and TSR over a period of 1998–2013. The influence of TSR on sea surface temperature (SST) and changes in ocean heat content (ΔOHC) during the MIZ bloom period were also investigated. A significant negative relationship between F L and TSR was widely found in the shelf region during MIZ bloom season. On the other hand, we found a significant positive (negative) relationship between SST (ΔOHC) and TSR. That is, earlier sea-ice retreat was associated with a dominance of larger phytoplankton during a colder and weakly stratified MIZ bloom season, suggesting that duration of nitrate supply, which is important for large-sized phytoplankton growth in this region (i.e., diatoms), can change according to TSR. In addition, under-ice phytoplankton blooms are likely to occur in years with late ice retreat, because sufficient light for phytoplankton growth can pass through the ice and penetrate into the water columns due to an increase in solar radiation toward the summer solstice. Moreover, we found not only the length of ice-free season but also annual median of F L positively correlated with annual net primary production (APP). Thus, both phytoplankton community composition and growing season are important for APP in the study area. Our findings showed quantitative relationship between the inter-annual variability of F L , TSR and APP suggesting satellite remote sensing of phytoplankton community size structure is suitable to document the impact of recent rapid sea ice loss on ecosystem of the study region.

Description: Fresh waters make a disproportionately large contribution to greenhouse gas (GHG) emissions, with shallow lakes being particular hotspots. Given their global prevalence, how GHG fluxes from shallow lakes are altered by climate change may have profound implications for the global carbon cycle. Empirical evidence for the temperature dependence of the processes controlling GHG production in natural systems is largely based on the correlation between seasonal temperature variation and seasonal change in GHG fluxes. However, ecosystem-level GHG fluxes could be influenced by factors, which whilst varying seasonally with temperature are actually either indirectly related (e.g. primary producer biomass) or largely unrelated to temperature, for instance nutrient loading. Here, we present results from the longest running shallow-lake mesocosm experiment which demonstrate that nutrient concentrations override temperature as a control of both the total and individual GHG flux. Furthermore, testing for temperature treatment effects at low and high nutrient levels separately showed only one, rather weak, positive effect of temperature (CH 4 flux at high nutrients). In contrast, at low nutrients, the CO 2 efflux was lower in the elevated temperature treatments, with no significant effect on CH 4 or N 2 O fluxes. Further analysis identified possible indirect effects of temperature treatment. For example, at low nutrient levels increased macrophyte abundance was associated with significantly reduced fluxes of both CH 4 and CO 2 for both total annual flux and monthly observation data. As macrophyte abundance was positively related to temperature treatment, this suggests the possibility of indirect temperature effects, via macrophyte abundance, on CH 4 and CO 2 flux. These findings indicate that fluxes of GHGs from shallow lakes may be controlled more by factors indirectly related to temperature, in this case nutrient concentration and the abundance of primary producers. Thus, at ecosystem scale response to climate change may not follow predictions based on the temperature dependence of metabolic processes. This article is protected by copyright. All rights reserved.

Description: Southwestern Tropical Atlantic coral growth response to atmospheric circulation changes induced by ozone depletion in Antarctica Biogeosciences Discussions, 12, 13193-13213, 2015 Author(s): H. Evangelista, I. Wainer, A. Sifeddine, T. Corrège, R. C. Cordeiro, S. Lamounier, D. Godiva, C.-C. Shen, F. Le Cornec, B. Turcq, C. E. Lazareth, and C.-Y. Hu Climate changes induced by stratospheric ozone depletion over Antarctica have been recognized as an important consequence of the recently observed Southern Hemisphere atmospheric circulation. Here we present evidences that the Brazilian coast (Southwestern Atlantic) may have been impacted from both winds and sea surface temperature changes derived from this process. Skeleton analysis of massive coral species living in shallow waters off Brazil are very sensitive to air–sea interactions, and seem to record this impact. Growth rates of Brazilian corals show a trend reversal that fits the ozone depletion evolution, confirming that ozone impacts are far reaching and potentially affect coastal ecosystems in tropical environments.

Description: Contrasting pH buffering patterns in neutral-alkaline soils along a 3600 km transect in northern China Biogeosciences Discussions, 12, 13215-13240, 2015 Author(s): W. Luo, P. N. Nelson, M.-H. Li, J. Cai, Y. Zhang, Y. Zhang, Y. Shan, R. Wang, X. Han, and Y. Jiang Soil pH buffering capacity (pHBC) plays a crucial role in predicting acidification rates, yet its large-scale patterns and controls are poorly understood, especially for neutral-alkaline soils. Here, we evaluated the spatial patterns and drivers of pHBC along a 3600 km long transect (1900 km sub-transect with carbonate containing soils and 1700 km sub-transect with non-carbonate containing soils) across northern China. Soil pHBC was greater in the carbonate containing soils than in the non-carbonate containing soils. Acid addition decreased soil pH in the non-carbonate containing soils more markedly than in the carbonate containing soils. Within the carbonate soil sub-transect, soil pHBC was positively correlated with cation exchange capacity (CEC), carbonate content and exchangeable sodium (Na) concentration, but negatively correlated with initial pH and clay content, and not correlated with soil organic carbon (SOC) content. Within the non-carbonate sub-transect, soil pHBC was positively related to initial pH, clay content, CEC and exchangeable Na concentration, but not related to SOC content. Carbonate content was the primary determinant of pHBC in the carbonate containing soils and CEC was the main determinant of buffering capacity in the non-carbonate containing soils. Soil pHBC was positively related to aridity index and carbonate content across the carbonate containing soil sub-transect. Our results indicated that mechanisms controlling pHBC differ among neutral-alkaline soils of northern China, especially between carbonate and non-carbonate containing soils, leading to different rates, risks, and impacts of acidification. This understanding should be incorporated into the acidification risk assessment and landscape management in a changing world.

Description: The tropical coffee crop has been predicted to be threatened by future climate changes and global warming. However, the real biological effects of such changes remain unknown. Therefore, this work aims to link the physiological and biochemical responses of photosynthesis to elevated air [CO 2 ] and temperature in cultivated genotypes of Coffea arabica L. (cv. Icatu and IPR108) and C. canephora cv. Conilon CL153. Plants were grown for 1 year at 25/20ºC (day/night) and 380 or 700 μL CO 2 L -1 , then subjected to temperature increase (0.5ºC/day) to 42/34ºC. Leaf impacts related to stomatal traits, gas exchanges, C-isotope composition, fluorescence parameters, thylakoid electron transport and enzyme activities were assessed at 25/20ºC, 31/25ºC, 37/30ºC and 42/34ºC. The results showed that 1) both species were remarkably heat tolerant up to 37/30ºC, but at 42/34ºC a threshold for irreversible non-stomatal deleterious effects was reached. Impairments were greater in C. arabica (especially in Icatu) and under normal [CO 2 ]. Photosystems and thylakoid electron transport were shown to be quite heat tolerant, contrasting to the enzymes related to energy metabolism, including RuBisCO, which were the most sensitive components. 2) Significant stomatal trait modifications were promoted almost exclusively by temperature and were species dependent. Elevated [CO 2 ] 3) strongly mitigated the impact of temperature on both species, particularly at 42/34ºC, modifying the response to supra-optimal temperatures, 4) promoted higher water use efficiency under moderately higher temperature (31/25 ºC), and 5) did not provoke photosynthetic down-regulation. Instead, enhancements in [CO 2 ] strengthened photosynthetic photochemical efficiency, energy use and biochemical functioning at all temperatures.. Our novel findings demonstrate a relevant heat resilience of coffee species and that elevated [CO 2 ] remarkably mitigated the impact of heat on coffee physiology, therefore playing a key role in this crop sustainability under future climate change scenarios. This article is protected by copyright. All rights reserved.

Description: Protected areas (PAs) are an essential tool for the conservation of biodiversity globally. Previous studies have focussed on the effectiveness of PAs and the design of optimal PA networks. However, not all PAs remain intact permanently; many PAs undergo downgrading, downsizing and/or degazettement (PADDD), a fact largely ignored until recently. The drivers of enacted PADDD events and the factors influencing its spatial occurrence are poorly understood, potentially undermining the efficacy of PAs and PA networks. Here we examine the spatial relationship between PADDD and economic, demographic, and structural variables, using a 110 year dataset of 342 enacted PADDD events across 44 countries in the tropics and sub tropics. We find that the probability of an enacted PADDD event increases with the size of the PA and through a synergistic interaction between PA size and local population densities. Our results are robust to the under-reporting of enacted PADDD events that occur among smaller PAs and in regions with lower population density. We find an economic motive for PADDD events, given that the opportunity costs associated with larger PAs are higher, on average, than smaller PAs. Our findings suggest a need for conservation practitioners to better consider PA characteristics, as well as the social, economic, and political context in which PAs are situated, to aid the creation of more efficient and sustainable PA networks. In particular, the dynamics of enacted PADDD events highlight the need to explicitly consider PA robustness as a core component of systematic conservation planning for PA networks. This article is protected by copyright. All rights reserved.

Description: Assuming that co-distributed species are exposed to similar environmental conditions, ecological niche models (ENMs) of bird and plant species inhabiting tropical dry forests (TDFs) in Mexico were developed to evaluate future projections of their distribution for the years 2050 and 2070. We used ENM-based predictions and climatic data for two Global Climate Models, considering two Representative Concentration Pathway scenarios (RCP4.5 / RCP8.5). We also evaluated the effects of habitat loss and the importance of the Mexican system of Protected Areas (PAs) on the projected models for a more detailed prediction of TDFs and to identify hotspots that require conservation actions. We identified four major distributional areas: the main one located along the Pacific Coast (from Sonora to Chiapas, including the Cape and Bajío regions, and the Balsas river basin), and three isolated areas: the Yucatán peninsula, central Veracruz, and southern Tamaulipas. When considering the effect of habitat loss, a significant reduction (~61%) of the TDFs predicted area occurred, whereas climate change models suggested (in comparison to the present distribution model) an increase in area of 3.0-10.0% and 3.0-9.0% for 2050 and 2070, respectively. In future scenarios, TDFs will occupy areas above its current average elevational distribution that are outside of its present geographical range. Our findings show that TDFs may persist in Mexican territory until the middle of the XXI century; however, the challenges about long-term conservation are partially addressed (only 7% unaffected within the Mexican network of PAs) with the current Mexican PAs network. Based on our ENM approach, we suggests that a combination of models of species inhabiting present TDFs and taking into account change scenarios represent an invaluable tool in order to create new PAs and ecological corridors, as a response to the increasing levels of habitat destruction and the effects of climate change on this ecosystem. This article is protected by copyright. All rights reserved.

Description: Avian communities of arid ecosystems may be particularly vulnerable to global climate change due to the magnitude of projected change for desert regions and the inherent challenges for species residing in resource limited ecosystems. How arid-zone birds will be affected by rapid increases in air temperature and increased drought frequency and severity is poorly understood because avian responses to climate change have primarily been studied in the relatively mesic northern temperate regions. We studied the effects of increasing air temperature and aridity on a Burrowing Owl ( Athene cunicularia ) population in the southwestern USA from 1998-2013. Over 16 years, the breeding population declined 98.1%, from 52 pairs to 1 pair, and nest success and fledgling output also declined significantly. These trends were strongly associated with the combined effects of decreased precipitation and increased air temperature. Arrival on the breeding grounds, pair formation, nest initiation, and hatch dates all showed significant delays ranging from 9.4 to 25.1 days over 9 years, which have negative effects on reproduction. Adult and juvenile body mass decreased significantly over time, with a loss of 7.9% mass in adult males and 10.9% mass in adult females over 16 years, and a loss of 20.0% mass in nestlings over 8 years. Taken together, these population and reproductive trends have serious implications for local population persistence. The southwestern USA has been identified as a climate change hotspot, with projections of warmer temperatures, less winter precipitation, and an increase in frequency and severity of extreme events including drought and heat waves. An increasingly warm and dry climate may contribute to this species’ decline, and may already be a driving force of their apparent decline in the desert southwest. This article is protected by copyright. All rights reserved.

Description: Cities are growing rapidly, thereby expected to cause a large-scale global biotic homogenization. Evidence for the homogenization hypothesis is mostly derived from plants and birds, whereas arthropods have so far been neglected. Here, I tested the homogenization hypothesis with three insect indicator groups, namely true bugs, leafhoppers, and beetles. In particular, I was interested whether insect species community composition differs between urban and rural areas, whether they are more similar between cities than between rural areas, and whether the found pattern is explained by true species turnover, species diversity gradients and geographic distance, by non-native or specialist species, respectively. I analysed insect species communities sampled on birch trees in a total of six Swiss cities and six rural areas nearby. In all indicator groups urban and rural community composition was significantly dissimilar due to native species turnover. Further, for bug and leafhopper communities I found evidence for large-scale homogenization due to urbanization, which was driven by reduced species turnover of specialist species in cities. Species turnover of beetle communities was similar between cities and rural areas. Interestingly, when specialist species of beetles were excluded from the analyses, cities were more dissimilar than rural areas, suggesting biotic differentiation of beetle communities in cities. Non-native species did not affect species turnover of the insect groups. However, given non-native arthropod species are increasing rapidly their homogenizing effect might be detected more often in future. Overall, the results show that urbanization has a negative large-scale impact on the diversity specialist species of the investigated insect groups. Specific measures in cities targeted at increasing the persistence of specialist species typical for the respective biogeographic region could help to stop the loss of biodiversity. This article is protected by copyright. All rights reserved.

Description: Warming and eutrophication are two of the most important global change stressors for natural ecosystems, but their interaction is poorly understood. We used a dynamic model of complex, size-structured food webs to assess interactive effects on diversity and network structure. We found antagonistic impacts: warming increases diversity in eutrophic systems and decreases it in oligotrophic systems. These effects interact with the community size structure: communities of similarly-sized species such as parasitoid-host systems are stabilized by warming and destabilized by eutrophication, whereas the diversity of size-structured predator-prey networks decreases strongly with warming, but decreases only weakly with eutrophication. Non-random extinction risks for generalists and specialists lead to higher connectance in networks without size structure and lower connectance in size-structured communities. Overall, our results unravel interactive impacts of warming and eutrophication and suggest that size structure may serve as an important proxy for predicting the community sensitivity to these global change stressors. This article is protected by copyright. All rights reserved.

Description: Plastic marine debris pollution is rapidly becoming one of the critical environmental concerns facing wildlife in the 21st century. Here we present a risk analysis for plastic ingestion by sea turtles on a global scale. We combined global marine plastic distributions based on ocean drifter data with sea turtle habitat maps to predict exposure levels to plastic pollution. Empirical data from necropsies of deceased animals were then utilised to assess the consequence of exposure to plastics. We modelled the risk (probability of debris ingestion) by incorporating exposure to debris and consequence of exposure, and included life history stage, species of sea turtle and date of stranding observation as possible additional explanatory factors. Life history stage is the best predictor of debris ingestion, but the best-fit model also incorporates encounter rates within a limited distance from stranding location, marine debris predictions specific to the date of the stranding study and turtle species. There is no difference in ingestion rates between stranded turtles vs. those caught as bycatch from fishing activity, suggesting that stranded animals are not a biased representation of debris ingestion rates in the background population. Oceanic life-stage sea turtles are at the highest risk of debris ingestion, and olive ridley turtles are the most at-risk species. The regions of highest risk to global sea turtle populations are off of the east coasts of the USA, Australia and South Africa; the east Indian Ocean, and Southeast Asia. Model results can be used to predict the number of sea turtles globally at risk of debris ingestion. Based on currently available data, initial calculations indicate that up to 52% of sea turtles may have ingested debris.

Description: Smallholder African farms in western Kenya have limited greenhouse gas fluxes Biogeosciences Discussions, 12, 15301-15336, 2015 Author(s): D. E. Pelster, M. C. Rufino, T. Rosenstock, J. Mango, G. Saiz, E. Diaz-Pines, G. Baldi, and K. Butterbach-Bahl Few field studies examine greenhouse gas (GHG) emissions from African agricultural systems resulting in high uncertainty for national inventories. We provide here the most comprehensive study in Africa to date, examining annual CO 2 , CH 4 and N 2 O emissions from 59 plots, across different vegetation types, field types and land classes in western Kenya. The study area consists of a lowland area (approximately 1200 m a.s.l.) rising approximately 600 m to a highland plateau. Cumulative annual fluxes ranged from 2.8 to 15.0 Mg CO 2 -C ha −1 , −6.0 to 2.4 kg CH 4 -C ha −1 and −0.1 to 1.8 kg N 2 O-N ha −1 . Management intensity of the plots did not result in differences in annual fluxes for the GHGs measured ( P = 0.46, 0.67 and 0.14 for CO 2 , N 2 O and CH 4 respectively). The similar emissions were likely related to low fertilizer input rates (≤ 20 kg ha −1 ). Grazing plots had the highest CO 2 fluxes ( P = 0.005); treed plots were a larger CH 4 sink than grazing plots ( P = 0.05); while N 2 O emissions were similar across vegetation types ( P = 0.59). This case study is likely representative for low fertilizer input, smallholder systems across sub-Saharan Africa, providing critical data for estimating regional or continental GHG inventories. Low crop yields, likely due to low inputs, resulted in high (up to 67 g N 2 O-N kg −1 aboveground N uptake) yield-scaled emissions. Improving crop production through intensification of agricultural production (i.e. water and nutrient management) may be an important tool to mitigate the impact of African agriculture on climate change.

Description: Combining two complementary micrometeorological methods to measure CH 4 and N 2 O fluxes over pasture Biogeosciences Discussions, 12, 15245-15299, 2015 Author(s): J. Laubach, M. Barthel, A. Fraser, J. E. Hunt, and D. W. T. Griffith New Zealand's largest industrial sector is pastoral agriculture, giving rise to a large fraction of the country's emissions of methane (CH 4 ) and nitrous oxide (N 2 O). We designed a system to continuously measure CH 4 and N 2 O fluxes at the field scale on two adjacent pastures that differed with respect to management. At the core of this system was a closed-cell Fourier-transform infrared spectrometer (FTIR), measuring the mole fractions of CH 4 , N 2 O and carbon dioxide (CO 2 ) at two heights at each site. In parallel, CO 2 fluxes were measured using eddy-covariance instrumentation. We applied two different micrometeorological ratio methods to infer the CH 4 and N 2 O fluxes from their respective mole fractions and the CO 2 fluxes. The first is a variant of the flux-gradient method, where it is assumed that the turbulent diffusivities of CH 4 and N 2 O equal that of CO 2 . This method was reliable when the CO 2 mole-fraction difference between heights was at least 4 times greater than the FTIR's resolution of differences. For the second method, the temporal increases of mole fractions in the stable nocturnal boundary layer, which are correlated for concurrently-emitted gases, are used to infer the unknown fluxes of CH 4 and N 2 O from the known flux of CO 2 . This method was sensitive to "contamination" from trace gas sources other than the pasture of interest and therefore required careful filtering. With both methods combined, estimates of mean daily CH 4 and N 2 O fluxes were obtained for 60 % of days at one site and 77 % at the other. Both methods indicated both sites as net sources of CH 4 and N 2 O. Mean emission rates for one year at the unfertilised, winter-grazed site were 8.2 (± 0.91) nmol CH 4 m −2 s −1 and 0.40 (± 0.018) nmol N 2 O m −2 s −1 . During the same year, mean emission rates at the irrigated, fertilised and rotationally-grazed site were 7.0 (± 0.89) nmol CH 4 m −2 s −1 and 0.57 (± 0.019) nmol N 2 O m −2 s −1 . At this site, the N 2 O emissions amounted to 1.19 (± 0.15) % of the nitrogen inputs from animal excreta and fertiliser application.

Description: Increasing P-stress and viral infection impact lipid remodeling of the picophytoplankter Micromonas pusilla Biogeosciences Discussions, 12, 15583-15610, 2015 Author(s): D. S. Maat, N. J. Bale, E. C. Hopmans, J. S. Sinninghe Damsté, S. Schouten, and C. P. D. Brussaard The intact polar lipid (IPL) composition of phytoplankton is plastic and dependent on environmental factors. Previous studies have shown that phytoplankton under phosphorus (P)-stress substitute phosphatidylglycerols (PGs) with sulphoquinovosyldiacylglycerols (SQDGs) and digalactosyldiacylglycerols (DGDGs). However, these studies focused merely on P-depletion, while phytoplankton in the natural environment often experience P-limitation whereby the degree of limitation depends on the supply rate of the limiting nutrient. Here we demonstrate a linear increase in SQDG : PG and DGDG : PG ratios with increasing cellular P-stress in the picophotoeukaryote Micromonas pusilla , obtained by P-replete, P-limited (chemostat) and P-starved (no supply of P) culturing conditions. These ratios were not affected by the degree of the P-limiting conditions itself (i.e. 0.97 and 0.32 μ max chemostats), suggesting there is a minimum requirement of PGs for the maintenance of cell growth. Viral infection reduced the increase in SQDG : PG and DGDG : PG ratios in P-starved cells, but the extent did depend on the growth rate of the cultures before infection. The membrane of M. pusilla virus MpV itself was lacking some IPLs compared to the host as, e.g. no monogalactosyldiacylglycerols could be detected. Growth of the phytoplankton cultures under enhanced CO 2 concentration did not affect the lipid remodeling results. The present study provides new insights into how the P-related trophic state of an ecosystem as well as viral infection can affect phytoplankton IPL composition, and therefore influence food web dynamics and biogeochemical cycling.

Description: No-tillage lessens soil CO 2 emissions the most under arid and sandy soil conditions: results from a meta-analysis Biogeosciences Discussions, 12, 15495-15535, 2015 Author(s): K. Abdalla, P. Chivenge, P. Ciais, and V. Chaplot The management of agroecosystems plays a crucial role in the global carbon cycle with soil tillage leading to known organic carbon redistributions within soils and changes in soil CO 2 emissions. Yet, discrepancies exist on the impact of tillage on soil CO 2 emissions and on the main soil and environmental controls. A meta-analysis was conducted using 46 peer-reviewed publications totaling 174 paired observations comparing CO 2 emissions over entire seasons or years from tilled and untilled soils across different climates, crop types and soil conditions with the objective of quantifying tillage impact on CO 2 emissions and assessing the main controls. On average, tilled soils emitted 21 % more CO 2 than untilled soils, which corresponded to a significant difference at P 〈 0.05. The difference increased to 29 % in sandy soils from arid climates with low soil organic carbon content (SOC C 〈 1 %) and low soil moisture, but tillage had no impact on CO 2 fluxes in clayey soils with high background SOC C (〉 3 %). Finally, nitrogen fertilization and crop residue management had little effect on the CO 2 responses of soils to no-tillage. These results suggest no-tillage is an effective mitigation measure of carbon dioxide losses from dry land soils. They emphasize the importance of including information on soil factors such as texture, aggregate stability and organic carbon content in global models of the carbon cycle.

Description: Predicting biomass of hyperdiverse and structurally complex Central Amazon forests – a virtual approach using extensive field data Biogeosciences Discussions, 12, 15537-15581, 2015 Author(s): D. Magnabosco Marra, N. Higuchi, S. E. Trumbore, G. H. P. M. Ribeiro, J. dos Santos, V. M. C. Carneiro, A. J. N. Lima, J. Q. Chambers, R. I. Negrón-Juárez, F. Holzwarth, B. Reu, and C. Wirth Old-growth forests are subject to substantial changes in structure and species composition due to the intensification of human activities, gradual climate change and extreme weather events. Trees store ca. 90 % of the total AGB above-ground biomass in tropical forests and AGB estimation models are crucial for forest management and conservation. In the Central Amazon, predicting AGB at large spatial-scales is a challenging task due to the heterogeneity of successional stages, high tree species diversity and inherent variations in allometry and architecture. We parameterized generic AGB estimation models applicable across species and a wide range of structural and compositional variation related to species sorting into height layers as well as frequent natural disturbances. We used 727 trees from 101 genera and at least 135 species harvested in a contiguous forest near Manaus, Brazil. Sampling from this dataset we assembled six scenarios designed to span existing gradients in floristic composition and size distribution in order to select models that best predict AGB at the landscape-level across successional gradients. We found that good individual tree model fits do not necessarily translate into good predictions of AGB at the landscape level. When predicting AGB (dry mass) over scenarios using our different models and an available pantropical model, we observed systematic biases ranging from −31 % (pantropical) to +39 %, with RMSE root-mean-square error values of up to 130 Mg ha −1 (pantropical). Our first and second best models had both low mean biases (0.8 and 3.9 %, respectively) and RMSE (9.4 and 18.6 Mg ha −1 ) when applied over scenarios. Predicting biomass correctly at the landscape-level in complex tropical forests, especially allowing good performance at the margins of data availability for model parametrization, requires the inclusion of predictors related to species architecture. The model of interest should comprise the floristic composition and size-distribution variability of the target forest, implying that even generic global or pantropical biomass estimation models can lead to strong biases. Reliable biomass assessments for the Amazon basin still depend on the collection of destructive allometry data at the local/regional scale and forest inventories including species-specific attributes, which are often unavailable or estimated imprecisely in most regions.

Description: Global rice agriculture will be increasingly challenged by water scarcity, while at the same time changes in demand (e.g. changes in diets or increasing demand for biofuels) will feed back on agricultural practices. These factors are changing traditional cropping patterns from double-rice to the introduction of upland crops in the dry season. For a comprehensive assessment of greenhouse gas (GHG) balances, we measured methane (CH 4 ) / nitrous oxide (N 2 O) emissions and agronomic parameters over 2.5 years in double-rice cropping (R-R) and paddy rice rotations diversified with either maize (R-M) or aerobic rice (R-A) in upland cultivation. Introduction of upland crops in the dry season reduced irrigation water use and CH 4 emissions by 66-81% and 95-99%, respectively. Moreover, for practices including upland crops, CH 4 emissions in the subsequent wet season with paddy rice were reduced by 54-60%. Although annual N 2 O emissions increased twice- to threefold in the diversified systems, the strong reduction of CH 4 led to a significantly lower (p〈0.05) annual GWP (CH 4 +N 2 O) as compared to the traditional double-rice cropping system. Measurements of soil organic carbon (SOC) contents before and three years after introduction of upland crop rotations indicated a SOC loss for the R-M system, while for the other systems SOC stocks were unaffected. This trend for R-M systems needs to be followed since it has significant consequences not only for the GWP balance but also with regard to soil fertility. Economic assessment showed a similar gross profit span for R-M and R-R, while gross profits for R-A were reduced as a consequence of lower productivity. Nevertheless, regarding a future increase of water scarcity it can be expected that mixed lowland-upland systems will expand in SE Asia as water requirements were cut by more than half in both rotation systems with upland crops. This article is protected by copyright. All rights reserved.

Description: Agricultural systems are being challenged to decrease water use and increase production while climate becomes more variable and the world's population grows. Low water use efficiency is traditionally characterized by high water use relative to low grain production and usually occurs under dry conditions. However, when a cropping system fails to take advantage of available water during wet conditions, this is also an inefficiency and is often detrimental to the environment. Here we provide a systems-level definition of water use efficiency (sWUE) that addresses both production and environmental quality goals through incorporating all major system water losses (evapotranspiration, drainage, and runoff). We extensively calibrated and tested the Agricultural Production Systems sIMulator (APSIM) using six years of continuous crop and soil measurements in corn- and soybean-based cropping systems in central Iowa, USA. We then used the model to determine water use, loss, and grain production in each system and calculated sWUE in years that experienced drought, flood, or historically average precipitation. Systems water use efficiency was found to be greatest during years with average precipitation. Simulation analysis using 28 years of historical precipitation data, plus the same dataset with ± 15% variation in daily precipitation, showed that in this region 430 mm of seasonal (planting to harvesting) rainfall resulted in the optimum sWUE for corn, and 317 mm for soybean. Above these precipitation levels, the corn and soybean yields did not increase further, but the water loss from the system via runoff and drainage increased substantially, leading to a high likelihood of soil, nutrient, and pesticide movement from the field to waterways. As the Midwestern US is predicted to experience more frequent drought and flood, inefficiency of cropping systems water use will also increase. This work provides a framework to concurrently evaluate production and environmental performance of cropping systems. This article is protected by copyright. All rights reserved.

Description: The Southern Ocean ecosystem is undergoing rapid physical and biological changes that are likely to have profound implications for higher-order predators. Here we compare the long-term, historical responses of Southern Ocean predators to climate change. We examine palaeoecological evidence for changes in the abundance and distribution of seabirds and marine mammals, and place these into context with palaeoclimate records in order to identify key environmental drivers associated with population changes. Our synthesis revealed two key factors underlying Southern Ocean predator population changes; 1) the availability of ice-free ground for breeding, and 2) access to productive foraging grounds. The processes of glaciation and sea ice fluctuation were key; the distributions and abundances of elephant seals, snow petrels, gentoo, chinstrap and Adélie penguins all responded strongly to the emergence of new breeding habitat coincident with deglaciation and reductions in sea ice. Access to productive foraging grounds was another limiting factor, with snow petrels, king and emperor penguins all affected by reduced prey availability in the past. Several species were isolated in glacial refugia and there is evidence that refuge populations were supported by polynyas. While the underlying drivers of population change were similar across most Southern Ocean predators, the individual responses of species to environmental change varied because of species specific factors such as dispersal ability and environmental sensitivity. Such interspecific differences are likely to affect the future climate change responses of Southern Ocean marine predators and should be considered in conservation plans. Comparative palaeoecological studies are a valuable source of long-term data on species’ responses to environmental change that can provide important insights into future climate change responses. This synthesis highlights the importance of protecting productive foraging grounds proximate to breeding locations, as well as the potential role of polynyas as future Southern Ocean refugia. This article is protected by copyright. All rights reserved.

Description: Carbon dynamics and changing winter conditions: a review of current understanding and future research directions Biogeosciences Discussions, 12, 15763-15808, 2015 Author(s): M. Haei and H. Laudon Despite the important role of winters for northern ecosystems, it remains the least understood of all the seasons. Here, we summarize existing empirical studies on winter climate and carbon dynamics and highlight some important future research directions. The existing studies include field-scale snow-cover manipulation experiments representing extreme soil climate conditions, laboratory soil incubations studying the influential factors, and time-series of climate and carbon data showing long-term natural variations and existing trends. Most of the field and laboratory experiments indicate an increased soil organic carbon loss due to soil frost. Long-term data demonstrate temporal changes in winter CO 2 efflux and its important contribution to the annual fluxes. A number of research priorities to improve our understanding of winter conditions include (i) ecosystem processes in the fall-winter and winter-spring shoulder seasons, (ii) extreme events, (iii) partitioning into organic- and inorganic carbon, (iv) carry-over effects of winter and growing season on each other, (v) long-term cumulative impacts, and (vi) improved winter process modelling. These areas of research would enable an improved understanding of the role of the snow covered period for carbon cycling, and provide a basis for more realistic models that include winter processes.

Description: Vanishing coccolith vital effects with alleviated CO 2 limitation Biogeosciences Discussions, 12, 15835-15866, 2015 Author(s): M. Hermoso, I. Z. X. Chan, H. L. O. McClelland, A. M. C. Heureux, and R. E. M. Rickaby By recreating a range of geologically relevant concentrations of dissolved inorganic carbon (DIC) in the laboratory, we demonstrate that the magnitude of the vital effects in both carbon and oxygen isotopes of coccolith calcite of multiple species relates to ambient DIC concentration. Under high DIC levels, all the examined coccoliths lacked any offset from inorganic calcite, whereas in low (present-day) DIC concentrations, these vital effects and interspecies differences become substantial. These laboratory observations support the recent hypothesis from field observations that the appearance of interspecific vital effect in coccolithophores coincides with the long-term Neogene decline of atmospheric CO 2 concentrations. The present study brings further valuable constraints on coccolith isotopic compositions by demonstrating the threshold for the absence of vital effects under high DIC regimes. From a mechanistic viewpoint, we show that the vital effect is determined by physiology; growth rate, cell size and relative rates of photosynthesis and calcification, and a modulation of these parameters with ambient carbon availability. This study provides palaeoceanographers with a biogeochemical framework that can be utilised to further develop the use of calcareous nannofossils in palaeoceanography to derive sea surface temperature and p CO 2 levels.

Description: Ocean acidification modulates expression of genes and physiological performance of a marine diatom Biogeosciences Discussions, 12, 15809-15833, 2015 Author(s): Y. Li, S. Zhuang, Y. Wu, H. Ren, F. Cheng, X. Lin, K. Wang, J. Beardall, and K. Gao Ocean Acidification (OA) is known to affect various aspects of the physiological performance of diatoms, but there is little information on the underlining molecular mechanisms involved. Here, we show that in the model diatom Phaeodactylum tricornutum expression of the genes related to light harvesting, carbon acquisition and carboxylation, nitrite assimilation and ATP synthesis are modulated by OA. Growth and photosynthetic carbon fixation were enhanced by elevated CO 2 (1000 μatm) under both constant indoor and fluctuating outdoor light regimes. The genetic expression of nitrite reductase (NiR) was up-regulated by OA regardless of light levels and/or regimes. The transcriptional expression of fucoxanthin chlorophyll a/c protein (lhcf type (FCP)) and mitochondrial ATP synthase (mtATP synthase) genes were also enhanced by OA, but only under high light intensity. OA treatment decreased the expression of β-carbonic anhydrase (β-CA) along with down-regulation of CO 2 concentrating mechanisms (CCMs). Additionally, the genes for these proteins (NiR, FCP, mtATP synthase, β-CA) showed diel expressions either under constant indoor light or fluctuating sunlight. Thus, OA enhanced photosynthetic and growth rates by stimulating nitrogen assimilation and indirectly by down-regulating the energy-costly inorganic carbon acquisition process.

Description: Human activities are causing rapid environmental change at a global scale. Urbanization is responsible for some of the most extreme human-altered habitats and is a known driver of evolutionary change, but evidence and understanding of these processes is limited. Here, we investigate the potential underlying mechanisms contributing to the contemporary evolution of migration behaviour in the Eurasian blackcap ( Sylvia atricapilla ). Blackcaps from central Europe have been wintering in urban areas of Britain with increasing frequency over the past 60 years, rather than migrating south to the Mediterranean. It has been hypothesized that the popularization of providing supplementary foods for wild birds within Britain may have influenced this marked migratory change, but quantifying the selective forces shaping evolutionary changes remains challenging. Using a long-term national scale data set, we examine both the spatial distribution and interannual variation in blackcap wintering behaviour in Britain in relation to supplementary food availability and local climate. Over a 12-year period, we show that blackcaps are becoming increasingly associated with the provision of supplementary foods in British gardens, and that the reliability of bird food supplies is influencing their winter distribution at a national scale. In addition, local climatic temperatures and broader scale weather variation are also important determinants of blackcap wintering patterns once they arrive in Britain. Based on our findings, we conclude that a synergistic effect of increased availability of feeding resources, in the form of garden bird food, coupled with climatic amelioration, has enabled a successful new wintering population to become established in Britain. As global biodiversity is threatened by human-induced environmental change, this study presents new and timely evidence of the role human activities can play in shaping evolutionary trajectories.