ALBERT — All Library Books, journals and Electronic Records Telegrafenberg

1

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Viral infection: The language of phages (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 134 (2017). doi:10.1038/nrmicro.2017.8 Author: Andrea Du Toit The authors of this study report that phages of Bacillus species use a peptide-based communication system to decide whether to enter the lytic or lysogenic life cycle.

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Structural biology: High-order integration (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 133 (2017). doi:10.1038/nrmicro.2017.3 Author: Ashley York To establish a lasting infection, lentiviruses, such as HIV-1, stably integrate their DNA into the chromatin of host cells. Integration is mediated by the viral integrase enzyme in a multimeric nucleoprotein complex called the intasome, which assembles onto viral DNA ends to form the strand

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Metagenomics: Mining for CRISPR–Cas (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 133 (2017). doi:10.1038/nrmicro.2017.4 Author: Ashley York CRISPR–Cas systems confer adaptive immunity against exogenic elements in bacteria and archaea, and provide unprecedented potential for genome editing that is revolutionizing biological and clinical research. Current CRISPR–Cas systems are based on enzymes that were identified in isolated bacteria, thus excluding the majority of enzymes

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A journey into the brain: insight into how bacterial pathogens cross blood–brain barriers (2017)

Mathieu Coureuil; Hervé Lécuyer; Sandrine Bourdoulous; Xavier Nassif

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 149 (2017). doi:10.1038/nrmicro.2016.178 Authors: Mathieu Coureuil, Hervé Lécuyer, Sandrine Bourdoulous & Xavier Nassif The blood–brain barrier, which is one of the tightest barriers in the body, protects the brain from insults, such as infections. Indeed, only a few of the numerous blood-borne bacteria can cross the blood–brain barrier to cause meningitis. In this Review, we focus on invasive

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Viral infection: Competing membrane proteins regulate picornavirus genome delivery (2017)

Shimona Starling

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 132 (2017). doi:10.1038/nrmicro.2017.1 Author: Shimona Starling This study reveals that two host cell membrane proteins have contrasting roles during the transfer of picornavirus RNA into the cytoplasm.

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Bacterial Pathogenesis: Microbial manipulation of the gut–brain axis (2017)

Shimona Starling

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 131 (2017). doi:10.1038/nrmicro.2017.9 Author: Shimona Starling This study shows that pathogen-mediated inhibition of sickness-induced anorexia can promote transmission and reduce virulence.

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A sea change for virology (2017)

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 129 (2017). doi:10.1038/nrmicro.2017.13 This issue marks the publication of a Consensus Statement that proposes the integration of viruses that are only characterized by metagenomic data into virus taxonomy.

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Biofilms: Shocking biofilms (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 132 (2017). doi:10.1038/nrmicro.2017.6 Author: Ashley York This study highlights a heretofore unappreciated role of electrical signalling in biofilm communities and in their interaction with their environment.

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Bacterial pathogenesis: A deadly chain of events (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 135 (2017). doi:10.1038/nrmicro.2017.12 Author: Andrea Du Toit Tuberculosis is characterized by the formation of granulomas. These macrophage-rich structures are formed to restrict the growth of Mycobacterium tuberculosis; however, macrophage necrosis in granulomas can facilitate pathogen growth. In this study, Mahamed et al. tracked infection outcomes in primary human macrophages in

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Microbiome: Getting organized early in life (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 135 (2017). doi:10.1038/nrmicro.2017.10 Author: Andrea Du Toit In adults, distinct microbial communities inhabit different body sites and exert site-specific metabolic functions. However, when and how microbial community structure and function are established in early life have remained elusive. Chu et al. carried out a large population-based cohort study of maternal–infant pairs

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11

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Bacterial development: Streptomyces' cue to leave (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 134 (2017). doi:10.1038/nrmicro.2017.2 Author: Andrea Du Toit This study shows that co-culturing Streptomyces venezuelae with the yeast Saccharomyces cerevisiae triggers a previously unknown growth mode in S. venezuelae that enables cells to explore their environment.

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Finding the needle in the haystack (2017)

Gavin G. Rutledge; Cristina V. Ariani

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 136 (2017). doi:10.1038/nrmicro.2017.7 Authors: Gavin G. Rutledge & Cristina V. Ariani This month's Genome Watch discusses the potential of selective whole-genome amplification for overcoming the challenges of whole-genome sequencing of malaria parasites in clinical samples in which they are low in abundance.

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Clinical and biological insights from viral genome sequencing (2017)

Charlotte J. Houldcroft; Mathew A. Beale; Judith Breuer

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 183 (2017). doi:10.1038/nrmicro.2016.182 Authors: Charlotte J. Houldcroft, Mathew A. Beale & Judith Breuer Whole-genome sequencing (WGS) of pathogens is becoming increasingly important not only for basic research but also for clinical science and practice. In virology, WGS is important for the development of novel treatments and vaccines, and for increasing the power of molecular epidemiology and evolutionary genomics.

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14

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Consensus statement: Virus taxonomy in the age of metagenomics (2017)

Peter Simmonds; Mike J. Adams; Mária BenkőMya Breitbart; J. Rodney Brister; Eric B. Carstens; Andrew J. Davison; Eric Delwart; Alexander E. Gorbalenya; Balázs Harrach; Roger Hull; Andrew M.Q. King; Eugene V. Koonin; Mart Krupovic; Jens H. Kuhn; Elliot J. Lefkowitz; Max L. Nibert; Richard Orton; Marilyn J. Roossinck; Sead Sabanadzovic; Matthew B. Sullivan; Curtis A. Suttle; Robert B. Tesh; René A. van der Vlugt; Arvind Varsani; F. Murilo Zerbini

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 161 (2017). doi:10.1038/nrmicro.2016.177 Authors: Peter Simmonds, Mike J. Adams, Mária Benkő, Mya Breitbart, J. Rodney Brister, Eric B. Carstens, Andrew J. Davison, Eric Delwart, Alexander E. Gorbalenya, Balázs Harrach, Roger Hull, Andrew M.Q. King, Eugene V. Koonin, Mart Krupovic, Jens H. Kuhn, Elliot J. Lefkowitz, Max L. Nibert, Richard Orton, Marilyn J. Roossinck, Sead Sabanadzovic, Matthew B. Sullivan, Curtis A. Suttle, Robert B. Tesh, René A. van der Vlugt, Arvind Varsani & F. Murilo Zerbini The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data

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15

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Diversity and evolution of class 2 CRISPR–Cas systems (2017)

Sergey Shmakov; Aaron Smargon; David Scott; David Cox; Neena Pyzocha; Winston Yan; Omar O. Abudayyeh; Jonathan S. Gootenberg; Kira S. Makarova; Yuri I. Wolf; Konstantin Severinov; Feng Zhang; Eugene V. Koonin

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-02-14

Description: Nature Reviews Microbiology 15, 169 (2017). doi:10.1038/nrmicro.2016.184 Authors: Sergey Shmakov, Aaron Smargon, David Scott, David Cox, Neena Pyzocha, Winston Yan, Omar O. Abudayyeh, Jonathan S. Gootenberg, Kira S. Makarova, Yuri I. Wolf, Konstantin Severinov, Feng Zhang & Eugene V. Koonin Class 2 CRISPR–Cas systems are characterized by effector modules that consist of a single multidomain protein, such as Cas9 or Cpf1. We designed a computational pipeline for the discovery of novel class 2 variants and used it to identify six new CRISPR–Cas subtypes. The diverse

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16

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Bacterial pathogenesis: Vibrio enters 'sleep mode' to survive (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 515 (2017). doi:10.1038/nrmicro.2017.102 Author: Irene Vacca Vibrio cholerae is a water-borne pathogen that can cause cholera, an acute and severe gastrointestinal infection. A recent study by Silva-Valenzuela et al. investigated how this bacterium adapts to, and survives in, fresh water, which is an environment that is crucial for human

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17

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Microbiota: Tell me who you are and I'll tell you what you eat (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 515 (2017). doi:10.1038/nrmicro.2017.101 Author: Irene Vacca The gut microbiota of Drosophila melanogaster mainly comprises Acetobacter spp. and Lactobacillus spp., and their relative abundance changes at the individual level and throughout development; however, how the microbiota is assembled is not well understood. Chun-Nin Wong et al. manipulated the

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18

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Transmission of the gut microbiota: spreading of health (2017)

Hilary P. Browne; B. Anne Neville; Samuel C. Forster; Trevor D. Lawley

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 531 (2017). doi:10.1038/nrmicro.2017.50 Authors: Hilary P. Browne, B. Anne Neville, Samuel C. Forster & Trevor D. Lawley Transmission of commensal intestinal bacteria between humans could promote health by establishing, maintaining and replenishing microbial diversity in the microbiota of an individual. Unlike pathogens, the routes of transmission for commensal bacteria remain unappreciated and poorly understood, despite the likely commonalities between both. Consequently, broad

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Engineering of obligate intracellular bacteria: progress, challenges and paradigms (2017)

Erin E. McClure; Adela S. Oliva Chávez; Dana K. Shaw; Jason A. Carlyon; Roman R. Ganta; Susan M. Noh; David O. Wood; Patrik M. Bavoil; Kelly A. Brayton; Juan J. Martinez; Jere W. McBride; Raphael H. Valdivia; Ulrike G. Munderloh; Joao H. F. Pedra

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 544 (2017). doi:10.1038/nrmicro.2017.59 Authors: Erin E. McClure, Adela S. Oliva Chávez, Dana K. Shaw, Jason A. Carlyon, Roman R. Ganta, Susan M. Noh, David O. Wood, Patrik M. Bavoil, Kelly A. Brayton, Juan J. Martinez, Jere W. McBride, Raphael H. Valdivia, Ulrike G. Munderloh & Joao H. F. Pedra It is estimated that approximately one billion people are at risk of infection with obligate intracellular bacteria, but little is known about the underlying mechanisms that govern their life cycles. The difficulty in studying Chlamydia spp., Coxiella spp., Rickettsia spp., Anaplasma

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Bacterial genetics: Splitting is never easy (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 514 (2017). doi:10.1038/nrmicro.2017.98 Author: Irene Vacca Two recent studies shed light on the mechanisms that coordinate cell division with chromosomal replication and segregation in two distinct bacterial species.

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Viral infection: When two become one (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 511 (2017). doi:10.1038/nrmicro.2017.85 Author: Ashley York Two recent studies provide new insights into the fusion stage of HIV-1 entry.

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Bacterial physiology: Efflux pumps, fitness and virulence (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 512 (2017). doi:10.1038/nrmicro.2017.97 Author: Andrea Du Toit Two new studies explore the effect of overexpression of efflux pumps on bacterial fitness as well as the effect of loss of efflux function on virulence.

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23

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Biofilms: Building up the matrix (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 512 (2017). doi:10.1038/nrmicro.2017.91 Author: Irene Vacca Two independent recent studies have revealed how distinct components of the biofilm matrix contribute to its architectural stability and functionality.

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Bacterial physiology: Raising the alarm (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 513 (2017). doi:10.1038/nrmicro.2017.92 Author: Ashley York The targeted degradation of foreign nucleic acids by type III CRISPR–Cas systems is mediated by the multisubunit Csm interference complex. In addition, the CRISPR-associated protein Csm6 ribonuclease, which does not form part of the Csm complex, degrades foreign RNAs to provide full immunity, but how

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25

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Viral pathogenesis: Finding the enemy within (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 513 (2017). doi:10.1038/nrmicro.2017.93 Author: Ashley York Ebola virus (EBOV) can persist for many months after survivors have recovered from acute EBOV disease and cause post-EBOV syndrome. Understanding EBOV persistence in vivo has been challenging owing to the lack of an animal model, but now Zeng et al. report the

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26

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Bacterial pathogenesis: Bacteriophages, the glue that holds bacteria together (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 514 (2017). doi:10.1038/nrmicro.2017.96 Author: Ashley York A recent study provides a mechanism by which a bacteriophage may increase the translocation of Neisseria meningitidis into the bloodstream.

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Parasite genomics: Screening for the essentials (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 513 (2017). doi:10.1038/nrmicro.2017.94 Author: Ashley York Functional genome-wide screens in Plasmodium spp. parasites, the causative agents of malaria, have been lacking, as they are refractory to genetic manipulation. Now, a new study by Bushell et al. reports the findings of an in vivo genetic screen that identified essential

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Stronger together (2017)

John A. Lees; Gerry Tonkin-Hill; Stephen D. Bentley

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 516 (2017). doi:10.1038/nrmicro.2017.95 Authors: John A. Lees, Gerry Tonkin-Hill & Stephen D. Bentley This month's Genome Watch discusses how genome-wide epistasis analysis and genome-to-genome analyses are providing insights into the relevance of interactions between and within the genomes of pathogens and their hosts.

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Bacterial secretion: Stress-free vesicle production (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 574 (2017). doi:10.1038/nrmicro.2017.105 Author: Irene Vacca A recent study by Florez et al. shows a direct correlation between the export of PQS and OMV biogenesis, which suggests that by modulating the export of PQS it is possible to regulate the production of OMVs.

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Bacterial ecology: Cheaters take advantage (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 575 (2017). doi:10.1038/nrmicro.2017.108 Author: Irene Vacca Microbial cooperation includes various behaviours, such as nutrient acquisition. However, little is known about the costs and benefits of cooperation in relation to microbial growth. A recent study by Sexton and Schuster investigated the effects of nutrient limitation on the production of the siderophore pyoverdine

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Bacterial pathogenesis: Rewiring cellular dynamics and metabolism (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 576 (2017). doi:10.1038/nrmicro.2017.114 Author: Andrea Du Toit This study reports that Legionella pneumophila regulates mitochondrial dynamics to subvert mitochondrial bioenergetics of infected cells in a process that involves a bacterial T4SS effector and a host fission protein.

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Marine microbiology: Algal virus boosts nitrogen uptake in the ocean (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 573 (2017). doi:10.1038/nrmicro.2017.113 Author: Ashley York A recent study identified a host-derived ammonium transporter in the genome of an algal virus that increases the rate of nitrogen uptake by infected cells and changes how the host accesses diverse nitrogen sources during infection.

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Parasite development: RBP10 is key for parasite development in the blood (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 575 (2017). doi:10.1038/nrmicro.2017.109 Author: Irene Vacca During its life cycle, Trypanosoma brucei multiplies in the blood of infected individuals as the bloodstream form and in the midgut of Tsetse flies as the procyclic form. Changes in mRNA and protein levels accompany these developmental transitions. Mugo and Clayton now show that

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Bacterial evolution: Historical influences on antibiotic resistance (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 576 (2017). doi:10.1038/nrmicro.2017.111 Author: Ashley York A recent study investigated how the history of adaptation to a single antibiotic influences the trajectory of evolutionary dynamics during subsequent treatments with different antibiotics.

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Archaeal genetics: Structural insights into archaeal chromatin (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 575 (2017). doi:10.1038/nrmicro.2017.110 Author: Irene Vacca Most archaea have small basic proteins that are likely to share a common evolutionary ancestor with eukaryotic histones. A recent study by Mattiroli, Bhattacharyya et al. reported the 4 Å crystal structure of an archaeal histone–DNA complex. The authors reported that the DNA is

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Archaeal biology: Plasmid propagation by virus-like particles (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 577 (2017). doi:10.1038/nrmicro.2017.116 Author: Ashley York A defining feature that differentiates plasmids from viruses is their mechanism of propagation from cell to cell. Plasmids are transferred from donor to recipient as naked DNA, through cell–cell contact or in unstructured extracellular vesicles. A new study describes a novel mechanism of plasmid dissemination

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The resilience of the intestinal microbiota influences health and disease (2017)

Felix Sommer; Jacqueline Moltzau Anderson; Richa Bharti; Jeroen Raes; Philip Rosenstiel

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 630 (2017). doi:10.1038/nrmicro.2017.58 Authors: Felix Sommer, Jacqueline Moltzau Anderson, Richa Bharti, Jeroen Raes & Philip Rosenstiel The composition of the intestinal microbiota varies among individuals and throughout development, and is dependent on host and environmental factors. However, although the microbiota is constantly exposed to environmental challenges, its composition and function in an individual are stable against perturbations, as microbial communities are

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Sizing up the bacterial cell cycle (2017)

Lisa Willis; Kerwyn Casey Huang

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 606 (2017). doi:10.1038/nrmicro.2017.79 Authors: Lisa Willis & Kerwyn Casey Huang It is remarkable how robustly a bacterial species can maintain its preferred size. This capacity is intimately related to control of the cell cycle: cell size and growth rate determine the duration of the cell cycle, which must accommodate the initiation and completion of DNA

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Interbacterial predation as a strategy for DNA acquisition in naturally competent bacteria (2017)

Jan-Willem Veening; Melanie Blokesch

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 621 (2017). doi:10.1038/nrmicro.2017.66 Authors: Jan-Willem Veening & Melanie Blokesch Natural competence enables bacteria to take up exogenous DNA. The evolutionary function of natural competence remains controversial, as imported DNA can act as a source of substrates or can be integrated into the genome. Exogenous homologous DNA can also be used for genome repair. In

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Microbiome: Copy-catting host signalling molecules (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 577 (2017). doi:10.1038/nrmicro.2017.115 Author: Ashley York Small molecules produced by the host microbiota have been hypothesized to influence host physiology. In a recent study, Cohen et al. identified microbial N-acyl amides that mimic human signalling molecules and interact with host G protein-coupled receptors (GPCRs) to regulate gastrointestinal tract physiology.

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Embracing the unknown: disentangling the complexities of the soil microbiome (2017)

Noah Fierer

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 579 (2017). doi:10.1038/nrmicro.2017.87 Author: Noah Fierer Soil microorganisms are clearly a key component of both natural and managed ecosystems. Despite the challenges of surviving in soil, a gram of soil can contain thousands of individual microbial taxa, including viruses and members of all three domains of life. Recent advances in marker

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Legionella and Coxiella effectors: strength in diversity and activity (2017)

Jiazhang Qiu; Zhao-Qing Luo

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 591 (2017). doi:10.1038/nrmicro.2017.67 Authors: Jiazhang Qiu & Zhao-Qing Luo Legionella pneumophila and Coxiella burnetii are two evolutionarily related intracellular pathogens that use the Dot/Icm type IV secretion system to translocate effectors into host cells. These effectors are essential for the establishment of membrane-bound compartments known as replication vacuoles, which enable the survival

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Viral infection: A bacteriophage-like entry pathway in eukaryotes (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 577 (2017). doi:10.1038/nrmicro.2017.117 Author: Ashley York Most eukaryotic viruses release their genomes once they have entered host cells through endocytosis, pinocytosis or phagocytosis, whereas bacteriophages typically eject their DNA after they have attached to, and penetrated, the host membrane. A recent study of Paramecium bursaria chlorella virus 1 (PBCV1) reported

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Microbiome: The microbiota maintains oxygen balance in the gut (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 574 (2017). doi:10.1038/nrmicro.2017.112 Author: Irene Vacca A recent study describes a new molecular mechanism used by the gut microbiota to maintain a state of homeostasis in the intestinal lumen, and highlights the importance of PPARγ signalling in this complex regulation.

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Illuminating microbial diversity (2017)

Samuel C. Forster

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-09-14

Description: Nature Reviews Microbiology 15, 578 (2017). doi:10.1038/nrmicro.2017.106 Author: Samuel C. Forster This month's Genome Watch discusses the release of 1,003 bacterial and archaeal genomes, and describes how they could increase our understanding of the diversity of microbial biological functions and contribute to improved metagenomic analyses.

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Epidemiology: Anthrax threatens wildlife (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 515 (2017). doi:10.1038/nrmicro.2017.100 Author: Irene Vacca Anthrax is a bacterial disease that affects wild and domestic animals, as well as humans. Although outbreaks have mostly been reported in arid ecosystems of the African savannahs, lethal anthrax-like cases in wild chimpanzees were reported in a rainforest habitat, and the causative agent was

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Pseudomonas predators: understanding and exploiting phage–host interactions (2017)

Jeroen De Smet; Hanne Hendrix; Bob G. Blasdel; Katarzyna Danis-Wlodarczyk; Rob Lavigne

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 517 (2017). doi:10.1038/nrmicro.2017.61 Authors: Jeroen De Smet, Hanne Hendrix, Bob G. Blasdel, Katarzyna Danis-Wlodarczyk & Rob Lavigne Species in the genus Pseudomonas thrive in a diverse set of ecological niches and include crucial pathogens, such as the human pathogen Pseudomonas aeruginosa and the plant pathogen Pseudomonas syringae. The bacteriophages that infect Pseudomonas spp. mirror the widespread and diverse

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Viral effects on the content and function of extracellular vesicles (2017)

Nancy Raab-Traub; Dirk P. Dittmer

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 559 (2017). doi:10.1038/nrmicro.2017.60 Authors: Nancy Raab-Traub & Dirk P. Dittmer The release of membrane-bound vesicles from cells is being increasingly recognized as a mechanism of intercellular communication. Extracellular vesicles (EVs) or exosomes are produced by virus-infected cells and are thought to be involved in intercellular communication between infected and uninfected cells. Viruses, in particular oncogenic

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Antimalarial drug discovery — approaches and progress towards new medicines (2017)

Erika L. Flannery; Arnab K. Chatterjee; Elizabeth A. Winzeler

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-08-15

Description: Nature Reviews Microbiology 15, 572 (2017). doi:10.1038/nrmicro.2017.88 Author: Erika L. Flannery, Arnab K. Chatterjee & Elizabeth A. Winzeler Nature Reviews Microbiology11, 849–862 (2013)In the above article, the structure of DSM265 in figure 3 was missing a methyl group. This has now been corrected in the PDF and online. We apologize to readers for any confusion

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Parasite biology: New insights into Plasmodium hepatocyte entry (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 382 (2017). doi:10.1038/nrmicro.2017.70 Author: Irene Vacca Liver infection by Plasmodium spp. sporozoites is a crucial initial step in the life cycle of malaria parasites; however, the underlying molecular mechanisms are still poorly understood. Now, a new study provides molecular insights into hepatocyte invasion by Plasmodium spp. sporozoites. The authors

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Bacterial physiology: An inside job on metabolism (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 383 (2017). doi:10.1038/nrmicro.2017.68 Author: Ashley York Two new studies reveal how Mycobacterium tuberculosis adapts to environmental stresses that are associated with an intracellular lifestyle.

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Genome watch: Klebsiella pneumoniae: when a colonizer turns bad (2017)

Matthew J. Dorman; Francesca L. Short

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 384 (2017). doi:10.1038/nrmicro.2017.64 Authors: Matthew J. Dorman & Francesca L. Short This month's Genome Watch highlights how whole-genome sequencing (WGS) and epidemiological studies can be combined to explore the link between colonization and infection by Klebsiella pneumoniae in patients who are hospitalized.

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Oxidative stress, protein damage and repair in bacteria (2017)

Benjamin Ezraty; Alexandra Gennaris; Frédéric Barras; Jean-François Collet

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 385 (2017). doi:10.1038/nrmicro.2017.26 Authors: Benjamin Ezraty, Alexandra Gennaris, Frédéric Barras & Jean-François Collet Oxidative damage can have a devastating effect on the structure and activity of proteins, and may even lead to cell death. The sulfur-containing amino acids cysteine and methionine are particularly susceptible to reactive oxygen species (ROS) and reactive chlorine species (RCS), which can damage proteins.

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Viral evolution: Zika is on point to increase spread (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 381 (2017). doi:10.1038/nrmicro.2017.62 Author: Andrea Du Toit This study suggests that the valine residue at position 188 of NS1 has a crucial role in antigenaemia, which is essential for the transmission of Zika virus from mammalian hosts to mosquitoes.

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Viral evolution: Phage infection strategies (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 382 (2017). doi:10.1038/nrmicro.2017.71 Author: Irene Vacca The functional consequences of divergent phage evolution on infection have not been analysed until now. By using transcriptomics analyses, Blasdel et al. compared the infection strategies of two evolutionarily related phages, PAK_P3 and PAK_P4, against the same Pseudomonas aeruginosa host strain. They showed

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Ustilago maydis effectors and their impact on virulence (2017)

Daniel Lanver; Marie Tollot; Gabriel Schweizer; Libera Lo Presti; Stefanie Reissmann; Lay-Sun Ma; Mariana Schuster; Shigeyuki Tanaka; Liang Liang; Nicole Ludwig; Regine Kahmann

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In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 409 (2017). doi:10.1038/nrmicro.2017.33 Authors: Daniel Lanver, Marie Tollot, Gabriel Schweizer, Libera Lo Presti, Stefanie Reissmann, Lay-Sun Ma, Mariana Schuster, Shigeyuki Tanaka, Liang Liang, Nicole Ludwig & Regine Kahmann Biotrophic fungal plant pathogens establish an intimate relationship with their host to support the infection process. Central to this strategy is the secretion of a range of protein effectors that enable the pathogen to evade plant immune defences and modulate host metabolism to meet its

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Bacterial pathogenesis: Campylobacter follows the clues (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 382 (2017). doi:10.1038/nrmicro.2017.63 Author: Irene Vacca Luethy et al. show that metabolites produced by the gut microbiota can modulate the expression of Campylobacter jejuni determinants that are required for growth, commensalism and virulence.

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Ménage à trois in the human gut: interactions between host, bacteria and phages (2017)

Mohammadali Khan Mirzaei; Corinne F. Maurice

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 397 (2017). doi:10.1038/nrmicro.2017.30 Authors: Mohammadali Khan Mirzaei & Corinne F. Maurice The human gut is host to one of the densest microbial communities known, the gut microbiota, which contains bacteria, archaea, viruses, fungi and other microbial eukaryotes. Bacteriophages in the gut are largely unexplored, despite their potential to regulate bacterial communities and thus human health. In

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Fungal physiology: Acidic pH interferes with Candida persistence (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 382 (2017). doi:10.1038/nrmicro.2017.72 Author: Irene Vacca Candida albicans is an opportunistic fungal pathogen that can colonize host niches at varying pH. A study by Sherrington et al. shows that the growth of C. albicans in acidic environments results in structural changes to the cell wall that enhance its

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Leukocidins: staphylococcal bi-component pore-forming toxins find their receptors (2017)

András N. Spaan; Jos A. G. van Strijp; Victor J. Torres

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 435 (2017). doi:10.1038/nrmicro.2017.27 Authors: András N. Spaan, Jos A. G. van Strijp & Victor J. Torres Staphylococcus aureus is a major bacterial pathogen that causes disease worldwide. The emergence of strains that are resistant to commonly used antibiotics and the failure of vaccine development have resulted in a renewed interest in the pathophysiology of this bacterium. Staphylococcal leukocidins are a

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Anti-trypanosomatid drug discovery: an ongoing challenge and a continuing need (2017)

Mark C. Field; David Horn; Alan H. Fairlamb; Michael A. J. Ferguson; David W. Gray; Kevin D. Read; Manu De Rycker; Leah S. Torrie; Paul G. Wyatt; Susan Wyllie; Ian H. Gilbert

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Description: Nature Reviews Microbiology 15, 447 (2017). doi:10.1038/nrmicro.2017.69 Author: Mark C. Field, David Horn, Alan H. Fairlamb, Michael A. J. Ferguson, David W. Gray, Kevin D. Read, Manu De Rycker, Leah S. Torrie, Paul G. Wyatt, Susan Wyllie & Ian H. Gilbert Nature Reviews Microbiology15, 217–231 (2017)In figure 2b of this article, the structures of Pafuramidine and DB75 were incorrect. The mistakes have been corrected in the PDF and online. The authors apologize to readers for any confusion caused.

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Bacterial evolution: The origins of pathogenic enterococci (2017)

Shimona Starling

Springer Nature

In: Nature Reviews Microbiology

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Description: Nature Reviews Microbiology 15, 382 (2017). doi:10.1038/nrmicro.2017.65 Author: Shimona Starling This study investigates the origins of multidrug-resistant pathogenic enterococci.

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Next-generation approaches to understand and combat the antibiotic resistome (2017)

Terence S. Crofts; Andrew J. Gasparrini; Gautam Dantas

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-06-14

Description: Nature Reviews Microbiology 15, 422 (2017). doi:10.1038/nrmicro.2017.28 Authors: Terence S. Crofts, Andrew J. Gasparrini & Gautam Dantas Antibiotic resistance is a natural feature of diverse microbial ecosystems. Although recent studies of the antibiotic resistome have highlighted barriers to the horizontal transfer of antibiotic resistance genes between habitats, the rapid global spread of genes that confer resistance to carbapenem, colistin and quinolone antibiotics

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Adaptation... that's what you need? (2017)

Chrispin Chaguza; Stephen D. Bentley

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In: Nature Reviews Microbiology

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Publication Date: 2017-07-14

Description: Nature Reviews Microbiology 15, 452 (2017). doi:10.1038/nrmicro.2017.78 Authors: Chrispin Chaguza & Stephen D. Bentley This month's Genome Watch highlights how sequencing the genomes of multiple bacterial isolates from humans and animal infection models has revealed the presence of mutations that might represent adaptations for persistence in the host.

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Variant surface antigens of Plasmodium falciparum and their roles in severe malaria (2017)

Mats Wahlgren; Suchi Goel; Reetesh R. Akhouri

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-07-14

Description: Nature Reviews Microbiology 15, 479 (2017). doi:10.1038/nrmicro.2017.47 Authors: Mats Wahlgren, Suchi Goel & Reetesh R. Akhouri Proliferation and differentiation inside erythrocytes are important steps in the life cycle of Plasmodium spp. To achieve these, the parasites export polypeptides to the surface of infected erythrocytes; for example, to import nutrients and to bind to other erythrocytes and the host microvasculature. Binding

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Persistent bacterial infections and persister cells (2017)

Robert A. Fisher; Bridget Gollan; Sophie Helaine

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In: Nature Reviews Microbiology

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Publication Date: 2017-07-14

Description: Nature Reviews Microbiology 15, 453 (2017). doi:10.1038/nrmicro.2017.42 Authors: Robert A. Fisher, Bridget Gollan & Sophie Helaine Many bacteria can infect and persist inside their hosts for long periods of time. This can be due to immunosuppression of the host, immune evasion by the pathogen and/or ineffective killing by antibiotics. Bacteria can survive antibiotic treatment if they are resistant or tolerant to

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Microbiota: Leishmaniasis breaks the equilibrium (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-07-14

Description: Nature Reviews Microbiology 15, 451 (2017). doi:10.1038/nrmicro.2017.82 Author: Irene Vacca The skin microbiota affects wound healing, inflammatory and immune responses to infections, and chronic skin diseases. Gimblet et al. investigated the role of the skin microbiota in cutaneous leishmaniasis and found that infection with Leishmania spp. parasites caused a decrease in bacterial diversity

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Pathways to zoonotic spillover (2017)

Raina K. Plowright; Colin R. Parrish; Hamish McCallum; Peter J. Hudson; Albert I. Ko; Andrea L. Graham; James O. Lloyd-Smith

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-07-14

Description: Nature Reviews Microbiology 15, 502 (2017). doi:10.1038/nrmicro.2017.45 Authors: Raina K. Plowright, Colin R. Parrish, Hamish McCallum, Peter J. Hudson, Albert I. Ko, Andrea L. Graham & James O. Lloyd-Smith Zoonotic spillover, which is the transmission of a pathogen from a vertebrate animal to a human, presents a global public health burden but is a poorly understood phenomenon. Zoonotic spillover requires several factors to align, including the ecological, epidemiological and behavioural determinants of pathogen exposure,

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Mechanisms of gene flow in archaea (2017)

Alexander Wagner; Rachel J. Whitaker; David J. Krause; Jan-Hendrik Heilers; Marleen van Wolferen; Chris van der Does; Sonja-Verena Albers

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-07-14

Description: Nature Reviews Microbiology 15, 492 (2017). doi:10.1038/nrmicro.2017.41 Authors: Alexander Wagner, Rachel J. Whitaker, David J. Krause, Jan-Hendrik Heilers, Marleen van Wolferen, Chris van der Does & Sonja-Verena Albers Archaea are diverse, ecologically important, single-celled microorganisms. They have unique functions and features, such as methanogenesis and the composition of their cell envelope, although many characteristics are shared with the other domains of life, either through ancestry or through promiscuous horizontal gene transfer. The exchange

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Antimicrobials: Daylight robbery by Acinetobacter (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-11-21

Description: Antimicrobials: Daylight robbery by Acinetobacter Antimicrobials: Daylight robbery by 〈i〉Acinetobacter〈/i〉, Published online: 20 November 2017; doi:10.1038/nrmicro.2017.147 Bacterial predation by Acinetobacter baylyi increases the rate of horizontal gene transfer from Escherichia coli, which leads to the acquisition of antibiotic resistance genes from prey cells.

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Environmental microbiology: Around the globe in 2.2 billion sequences (2017)

Ursula Hofer

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-11-28

Description: Environmental microbiology: Around the globe in 2.2 billion sequences Environmental microbiology: Around the globe in 2.2 billion sequences, Published online: 27 November 2017; doi:10.1038/nrmicro.2017.152 Environmental microbiology: Around the globe in 2.2 billion sequences

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Archaea and the origin of eukaryotes (2017)

Laura Eme; Anja Spang; Jonathan Lombard; Courtney W. Stairs; Thijs J. G. Ettema

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-11-28

Description: Archaea and the origin of eukaryotes Archaea and the origin of eukaryotes, Published online: 27 November 2017; doi:10.1038/nrmicro.2017.154 Archaea and the origin of eukaryotes

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Listeria monocytogenes : towards a complete picture of its physiology and pathogenesis (2017)

Lilliana Radoshevich; Pascale Cossart

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-11-28

Description: Listeria monocytogenes : towards a complete picture of its physiology and pathogenesis 〈i〉Listeria monocytogenes〈/i〉: towards a complete picture of its physiology and pathogenesis, Published online: 27 November 2017; doi:10.1038/nrmicro.2017.126 Listeria monocytogenes is a food-borne pathogen responsible for human listeriosis. In this Review, Radoshevich and Cossart discuss the most recent advances in L. monocytogenes physiology, biology and pathogenesis.

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Bacterial Physiology: Touching base on bacterial surface sensing (2017)

Ursula Hofer

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-11-28

Description: Bacterial Physiology: Touching base on bacterial surface sensing Bacterial Physiology: Touching base on bacterial surface sensing, Published online: 27 November 2017; doi:10.1038/nrmicro.2017.150 Bacterial Physiology: Touching base on bacterial surface sensing

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Parasite development: The missing link to Plasmodium gametocytogenesis (2017)

Ursula Hofer

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-11-28

Description: Parasite development: The missing link to Plasmodium gametocytogenesis Parasite development: The missing link to 〈i〉Plasmodium〈/i〉 gametocytogenesis, Published online: 27 November 2017; doi:10.1038/nrmicro.2017.151 Parasite development: The missing link to Plasmodium gametocytogenesis

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Functional horizontal gene transfer from bacteria to eukaryotes (2017)

Filip Husnik; John P. McCutcheon

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-11-28

Description: Functional horizontal gene transfer from bacteria to eukaryotes Functional horizontal gene transfer from bacteria to eukaryotes, Published online: 27 November 2017; doi:10.1038/nrmicro.2017.137 In this Review, Husnik and McCutcheon discuss how horizontally transferred genes from bacteria become functional in eukaryotes and classify horizontal gene transfer events into two broad types: those that maintain pre-existing functions and those that add new functionality to the recipient, including altered host nutrition, protection and adaptation to extreme environments.

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Viral evolution: Closely monitoring influenza virus (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-31

Description: Viral evolution: Closely monitoring influenza virus Nature Reviews Microbiology, Published online: 30 October 2017; doi:10.1038/nrmicro.2017.139

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The evolution of seasonal influenza viruses (2017)

Velislava N. Petrova; Colin A. Russell

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-31

Description: The evolution of seasonal influenza viruses Nature Reviews Microbiology, Published online: 30 October 2017; doi:10.1038/nrmicro.2017.118 Seasonal influenza viruses continue to cause epidemics each year. In this Review, Petrova and Russell discuss recent advances in understanding the molecular determinants of influenza virus immune escape, sources of evolutionary selection pressure, population dynamics of influenza viruses and prospects for better influenza virus control.

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Microbiome: The microbiota's cryptic message (2017)

Ursula Hofer

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-31

Description: Microbiome: The microbiota's cryptic message Nature Reviews Microbiology, Published online: 30 October 2017; doi:10.1038/nrmicro.2017.138 This study shows how the crypt microbiota and the LPS that they produce alter epithelial proliferation and differentiation in the colon.

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Marine microbiology: Synchronized rhythms in the ocean (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-31

Description: Marine microbiology: Synchronized rhythms in the ocean Nature Reviews Microbiology, Published online: 30 October 2017; doi:10.1038/nrmicro.2017.140

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Genome watch: Microbiota shuns the modern world (2017)

Nitin Kumar; Samuel C. Forster

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-31

Description: Genome watch: Microbiota shuns the modern world Nature Reviews Microbiology, Published online: 30 October 2017; doi:10.1038/nrmicro.2017.136 This month's Genome Watch highlights the variation in gut microbiota across different human communities and explores how this is associated with lifestyle and diet.

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Microbiome: Diving deeper into the communities (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-25

Description: Microbiome: Diving deeper into the communities Nature Reviews Microbiology, Published online: 12 October 2017; doi:10.1038/nrmicro.2017.130

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New opportunities for managing acute and chronic lung infections (2017)

William O. C. M. Cookson; Michael J. Cox; Miriam F. Moffatt

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-25

Description: New opportunities for managing acute and chronic lung infections Nature Reviews Microbiology, Published online: 24 October 2017; doi:10.1038/nrmicro.2017.122 Traditional strategies to treat lung infections are based on the premise that the lung is sterile; however, it is now thought that the lung contains a resident microbiota. Here, Cookson et al . propose that concepts flowing from the Human Microbiome Project can transform the treatment of lung infections.

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Fungal physiology: Two for the price of one (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-25

Description: Fungal physiology: Two for the price of one Nature Reviews Microbiology, Published online: 12 October 2017; doi:10.1038/nrmicro.2017.132

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Understanding drug resistance will improve the treatment of bacterial infections (2017)

Laura J. V. Piddock

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-25

Description: Understanding drug resistance will improve the treatment of bacterial infections Nature Reviews Microbiology, Published online: 12 October 2017; doi:10.1038/nrmicro.2017.121 An improved understanding of the origins and spread of drug-resistant bacteria, as well as the identification of novel antimicrobial compounds and new drug combinations, will facilitate the development of better dosing regimens and novel strategies to manage drug resistance and prevent the dissemination of resistant bacteria.

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Uncovering the mechanisms of Acinetobacter baumannii virulence (2017)

Christian M. Harding; Seth W. Hennon; Mario F. Feldman

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-12-19

Description: Uncovering the mechanisms of Acinetobacter baumannii virulence Uncovering the mechanisms of 〈i〉Acinetobacter baumannii〈/i〉 virulence, Published online: 18 December 2017; doi:10.1038/nrmicro.2017.148 Recently, virulence mechanisms beyond canonical drug resistance were uncovered that enable Acinetobacter baumannii to thrive in the health-care environment and cause infections in critically ill patients. Harding, Hennon and Feldman explore the molecular features that promote environmental persistence and the most recently identified virulence factors that enable successful human infection.

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Anti-CRISPR: discovery, mechanism and function (2017)

April Pawluk; Alan R. Davidson; Karen L. Maxwell

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-25

Description: Anti-CRISPR: discovery, mechanism and function Nature Reviews Microbiology, Published online: 24 October 2017; doi:10.1038/nrmicro.2017.120 CRISPR–Cas adaptive immune systems are widespread in prokaryotes. In this Progress article, Maxwell and colleagues highlight how phages and other mobile genetic elements inactivate CRISPR–Cas systems using anti-CRISPR proteins and outline evolutionary and biotechnological implications of anti-CRISPR protein activity.

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Bacterial pathogenesis: Activating Helicobacter effector delivery (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-25

Description: Bacterial pathogenesis: Activating Helicobacter effector delivery Nature Reviews Microbiology, Published online: 24 October 2017; doi:10.1038/nrmicro.2017.135 A recent study revealed how H. pylori opens cell-to-cell junctions and traverses the gastric epithelium to bind to basolateral integrins, thereby activating the assembly and function of its type IV secretion system.

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Diagnosing antimicrobial resistance (2017)

Carey-Ann D. Burnham; Jennifer Leeds; Patrice Nordmann; Justin O'Grady; Jean Patel

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-25

Description: Diagnosing antimicrobial resistance Nature Reviews Microbiology, Published online: 12 October 2017; doi:10.1038/nrmicro.2017.103 Antimicrobial resistance constitutes a global health burden and research efforts are aimed at combatting the emergence of resistant microorganisms. In this Viewpoint article, several experts in the field discuss the role that rapid diagnostic tests have in managing the challenge of antimicrobial resistance, the drawbacks of current diagnostic methods, novel diagnostic strategies, and how such rapid diagnostic tools can inform drug development and the surveillance of resistance evolution.

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Novel vaccine vectors for HIV-1 (2017)

Dan H. Barouch; Louis J. Picker

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-25

Description: Novel vaccine vectors for HIV-1 Nature Reviews Microbiology, Published online: 12 October 2017; doi:10.1038/nrmicro.2017.134

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Techniques & applications: Expanding the genetic toolbox for fungi (2017)

Andrea Du Toit

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-10-31

Description: Techniques & applications: Expanding the genetic toolbox for fungi Nature Reviews Microbiology, Published online: 30 October 2017; doi:10.1038/nrmicro.2017.141

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Reshaping the tree of life (2017)

Eva Heinz; Daryl Domman

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-05-13

Description: Nature Reviews Microbiology 15, 322 (2017). doi:10.1038/nrmicro.2017.51 Authors: Eva Heinz & Daryl Domman This month's Genome Watch highlights how metagenomics is continuing to reveal the diversity of microorganisms in the environment and how it is challenging and expanding our understanding of how life evolved on Earth.

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Biofilms: New ways for streptococci to settle down (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-05-13

Description: Nature Reviews Microbiology 15, 321 (2017). doi:10.1038/nrmicro.2017.57 Author: Irene Vacca The respiratory tract of patients with cystic fibrosis is a polymicrobial environment in which Pseudomonas aeruginosa is a dominant pathogen and oral commensal streptococci are emerging as cohabitants. Using a dual species biofilm model, Scoffield et al. showed that Streptococcus parasanguinis uses

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A CRISPR toolbox to study virus–host interactions (2017)

Andreas S. Puschnik; Karim Majzoub; Yaw Shin Ooi; Jan E. Carette

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-05-13

Description: Nature Reviews Microbiology 15, 351 (2017). doi:10.1038/nrmicro.2017.29 Authors: Andreas S. Puschnik, Karim Majzoub, Yaw Shin Ooi & Jan E. Carette Viruses depend on their hosts to complete their replication cycles; they exploit cellular receptors for entry and hijack cellular functions to replicate their genome, assemble progeny virions and spread. Recently, genome-scale CRISPR–Cas screens have been used to identify host factors that are required for virus

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Corrigendum: Metal homeostasis and resistance in bacteria (2017)

Pete Chandrangsu; Christopher Rensing; John D. Helmann

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-05-13

Description: Nature Reviews Microbiology 15, 379 (2017). doi:10.1038/nrmicro.2017.53 Author: Pete Chandrangsu, Christopher Rensing & John D. Helmann Nature Reviews Microbiology15, 338–35010.1038/nrmicro.2017.15(2017)The acknowledgement section has been modified to include funding for Christopher Rensing. The following text has been added: C.R. is supported by the Strategic Priority Research Program of the Chinese Academy of Sciences

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Bacterial physiology: Shuttling lipids across bacterial membranes (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-05-13

Description: Nature Reviews Microbiology 15, 319 (2017). doi:10.1038/nrmicro.2017.49 Author: Irene Vacca Two recent studies provide novel mechanistic and structural insights into lipid and lipoprotein transport between the inner and outer bacterial membranes, across the periplasmic space.

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Metal homeostasis and resistance in bacteria (2017)

Pete Chandrangsu; Christopher Rensing; John D. Helmann

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-05-13

Description: Nature Reviews Microbiology 15, 338 (2017). doi:10.1038/nrmicro.2017.15 Authors: Pete Chandrangsu, Christopher Rensing & John D. Helmann Metal ions are essential for many reactions, but excess metals can be toxic. In bacteria, metal limitation activates pathways that are involved in the import and mobilization of metals, whereas excess metals induce efflux and storage. In this Review, we highlight recent insights into metal

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Microbiota: Clostridia protect from gut infections in early life (2017)

Irene Vacca

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-05-13

Description: Nature Reviews Microbiology 15, 321 (2017). doi:10.1038/nrmicro.2017.56 Author: Irene Vacca Neonates are highly susceptible to intestinal infections; this has been generally ascribed to the immaturity of the immune system, but other factors might contribute. Kim, Sakamoto et al. show that the composition of the gut microbiota is a key factor, as the microbiota protects

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Biofilms: Communities in sync (2017)

Shimona Starling

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-05-13

Description: Nature Reviews Microbiology 15, 320 (2017). doi:10.1038/nrmicro.2017.46 Author: Shimona Starling This study shows that distant biofilms can coordinate their behaviour and use time-sharing to increase their growth rate under nutrient-limiting conditions

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Viral pathogenesis: Masked by macrophages (2017)

Ashley York

Springer Nature

In: Nature Reviews Microbiology

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Publication Date: 2017-05-13

Description: Nature Reviews Microbiology 15, 320 (2017). doi:10.1038/nrmicro.2017.52 Author: Ashley York This study provides experimental support that macrophages may represent a persistent viral reservoir for HIV-1 in vivo.

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