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  • Articles  (3,173)
  • Oxford University Press  (3,173)
  • American Chemical Society
  • BioMed Central
  • Nature Publishing Group
  • 2010-2014  (644)
  • 1990-1994  (561)
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  • Biometrika  (234)
  • 3549
  • Mathematics  (3,173)
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  • Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • Articles  (3,173)
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  • Oxford University Press  (3,173)
  • American Chemical Society
  • BioMed Central
  • Nature Publishing Group
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  • Mathematics  (3,173)
  • Geosciences
  • Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
  • Biology  (3,173)
  • Medicine  (3,173)
  • 1
    Publication Date: 2013-02-24
    Description: Gaussian processes are widely used in nonparametric regression, classification and spatiotemporal modelling, facilitated in part by a rich literature on their theoretical properties. However, one of their practical limitations is expensive computation, typically on the order of n 3 where n is the number of data points, in performing the necessary matrix inversions. For large datasets, storage and processing also lead to computational bottlenecks, and numerical stability of the estimates and predicted values degrades with increasing n . Various methods have been proposed to address these problems, including predictive processes in spatial data analysis and the subset-of-regressors technique in machine learning. The idea underlying these approaches is to use a subset of the data, but this raises questions concerning sensitivity to the choice of subset and limitations in estimating fine-scale structure in regions that are not well covered by the subset. Motivated by the literature on compressive sensing, we propose an alternative approach that involves linear projection of all the data points onto a lower-dimensional subspace. We demonstrate the superiority of this approach from a theoretical perspective and through simulated and real data examples.
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  • 2
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    Oxford University Press
    Publication Date: 2013-02-24
    Description: Karl Pearson edited Biometrika for the first 35 years of its existence. Not only did he shape the journal, he also contributed over 200 pieces and inspired, more or less directly, most of the other contributions. The journal could not be separated from the man.
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  • 3
    Publication Date: 2013-02-24
    Description: In the modelling of longitudinal data from several groups, appropriate handling of the dependence structure is of central importance. Standard methods include specifying a single covariance matrix for all groups or independently estimating the covariance matrix for each group without regard to the others, but when these model assumptions are incorrect, these techniques can lead to biased mean effects or loss of efficiency, respectively. Thus, it is desirable to develop methods for simultaneously estimating the covariance matrix for each group that will borrow strength across groups in a way that is ultimately informed by the data. In addition, for several groups with covariance matrices of even medium dimension, it is difficult to manually select a single best parametric model among the huge number of possibilities given by incorporating structural zeros and/or commonality of individual parameters across groups. In this paper we develop a family of nonparametric priors using the matrix stick-breaking process of Dunson et al. (2008) that seeks to accomplish this task by parameterizing the covariance matrices in terms of their modified Cholesky decompositions (Pourahmadi, 1999). We establish some theoretical properties of these priors, examine their effectiveness via a simulation study, and illustrate the priors using data from a longitudinal clinical trial.
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  • 4
    Publication Date: 2013-02-24
    Description: Full Bayesian computational inference for model determination in undirected graphical models is currently restricted to decomposable graphs or other special cases, except for small-scale problems, say up to 15 variables. In this paper we develop new, more efficient methodology for such inference, by making two contributions to the computational geometry of decomposable graphs. The first of these provides sufficient conditions under which it is possible to completely connect two disconnected complete subsets of vertices, or perform the reverse procedure, yet maintain decomposability of the graph. The second is a new Markov chainMonte Carlo sampler for arbitrary positive distributions on decomposable graphs, taking a junction tree representing the graph as its state variable. The resulting methodology is illustrated with numerical experiments on three models.
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  • 5
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    Oxford University Press
    Publication Date: 2013-02-24
    Description: In longitudinal data analysis, statistical inference for sparse data and dense data could be substantially different. For kernel smoothing, the estimate of the mean function, the convergence rates and the limiting variance functions are different in the two scenarios. This phenomenon poses challenges for statistical inference, as a subjective choice between the sparse and dense cases may lead to wrong conclusions. We develop methods based on self-normalization that can adapt to the sparse and dense cases in a unified framework. Simulations show that the proposed methods outperform some existing methods.
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  • 6
    Publication Date: 2013-02-24
    Description: The problem of testing smooth components of an extended generalized additive model for equality to zero is considered. Confidence intervals for such components exhibit good across-the-function coverage probabilities if based on the approximate result , where f is the vector of evaluated values for the smooth component of interest and V f is the covariance matrix for f according to the Bayesian view of the smoothing process. Based on this result, a Wald-type test of f =0 is proposed. It is shown that care must be taken in selecting the rank used in the test statistic. The method complements previous work by extending applicability beyond the Gaussian case, while considering tests of zero effect rather than testing the parametric hypothesis given by the null space of the component’s smoothing penalty. The proposed p -values are routine and efficient to compute from a fitted model, without requiring extra model fits or null distribution simulation.
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  • 7
    Publication Date: 2013-02-24
    Description: Motivated by analysis of genetical genomics data, we introduce a sparse high-dimensional multivariate regression model for studying conditional independence relationships among a set of genes adjusting for possible genetic effects. The precision matrix in the model specifies a covariate-adjusted Gaussian graph, which presents the conditional dependence structure of gene expression after the confounding genetic effects on gene expression are taken into account. We present a covariate-adjusted precision matrix estimation method using a constrained 1 minimization, which can be easily implemented by linear programming. Asymptotic convergence rates in various matrix norms and sign consistency are established for the estimators of the regression coefficients and the precision matrix, allowing both the number of genes and the number of the genetic variants to diverge. Simulation shows that the proposed method results in significant improvements in both precision matrix estimation and graphical structure selection when compared to the standard Gaussian graphical model assuming constant means. The proposed method is applied to yeast genetical genomics data for the identification of the gene network among a set of genes in the mitogen-activated protein kinase pathway.
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  • 8
    Publication Date: 2013-02-24
    Description: This paper introduces, constructs and studies a new class of arrays, called strong orthogonal arrays, as suitable designs for computer experiments. A strong orthogonal array of strength t enjoys better space-filling properties than a comparable orthogonal array in all dimensions lower than t while retaining the space-filling properties of the latter in t dimensions. Latin hypercubes based on strong orthogonal arrays of strength t are more space-filling than comparable orthogonal array-based Latin hypercubes in all g dimensions for any 2 ≤ g ≤ t – 1.
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  • 9
    Publication Date: 2013-02-24
    Description: This paper considers the construction of blocked two-level regular designs with weak minimum aberration. We first obtain the minimum value of the number of two-factor interactions which are aliased with the block effects. Based on this result, two methods are then proposed in two different scenarios to construct weak minimum aberration blocked two-level designs with respect to some existing combined wordlength patterns.
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  • 10
    Publication Date: 2013-02-24
    Description: Rathbun et al. (2007) and Waagepetersen (2008) propose estimating functions for parameters of Poisson point process intensity that may be applied when space- and/or time-varying covariates are sampled from a probability-based sampling design. This paper demonstrates that Waageptersen’s estimating function is optimal in a class of weighted estimating functions.
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