ALBERT

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Yanjie Hou, Tian Gong, Jiangtao Zhang, Xi Yang, Yurong Guo〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The thinned-young apple polysaccharides from three varieties were obtained by hot water extraction at 88 ̊C for 120 min. The compositional monosaccharides of the three polysaccharides were shown to be the same (xylose, mannose, galactose and glucose) and the molecular weights of the polysaccharides were in the range of 200–300 kDa. Compared with “Qinyang” and “Pinklady”, the polysaccharide from “Jinshiji” had the highest emulsifying capacity. Moreover, the variations in pH and cation ion concentrations had also a significant effect on the emulsifying properties of the extracted polysaccharides. At pH 2.0–4.0, the prepared emulsion had smaller droplet sizes than at higher pH values. Although the emulsion was stable at low concentrations of Na〈sup〉+〈/sup〉 and Ca〈sup〉2+〈/sup〉 ions, high concentrations of Na〈sup〉+〈/sup〉 and Ca〈sup〉2+〈/sup〉 led to significant destabilization of the emulsion. Conclusively, our results demonstrated the potential application of thinned-young apple polysaccharide as a natural polysaccharide emulsifying agent.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Shuai Zhao, Wanfen Pu, Mikhail A. Varfolomeev, Chengdong Yuan, Shan Qin, Liangliang Wang, Dmitrii A. Emelianov, Artashes A. Khachatrian〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Because the thermal release correlates directly with the success of in-situ combustion (ISC) technology, this research performs a series of investigations concerning thermal behavior and kinetics of heavy crude oil during combustion using high pressure differential scanning calorimetry (HP-DSC) and accelerating rate calorimetry (ARC). The results obtained from HP-DSC profiles indicated that for oil alone and its mixtures with quartz sand/crushed core, the peak temperature was lowered, and the heat flow increased with increasing oxygen partial pressure. The heat enthalpy of low temperature oxidation (LTO) was higher than that of high temperature oxidation (HTO) under oxygen partial pressures of 0.5, 1 and 1.5 MPa, and the increase in heat enthalpy of LTO with oxygen partial pressure was more pronounced than that of HTO. Unlike the crushed core, the addition of quartz sand delayed exothermic oxidation reactions. Compared with oil only and oil + quartz sand, the LTO and HTO peak temperatures of oil + crushed core were considerably lowered, and the effect of crushed core on increasing heat release for LTO at oxygen partial pressure of 1.5 MPa was more prominent. It was observed that the heat enthalpy of LTO and HTO increased quasi-linearly with the oxygen partial pressure in both the presence and absence of quartz sand/crushed core. ISC might be considered as an appropriate candidate for Jiqi block, based on exothermic continuity of the ARC curves, with the near-wellbore zone of target block heated to 180 °C where the exothermic oxidation activity is notably intensified. The kinetic results showed that the LTO and HTO intervals were divided into 6 and 2 subintervals, respectively, which facilitated more precise modelling of the ISC process.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Zan Chen, Menglu Lin, Shuhua Wang, Shengnan Chen, Linsong Cheng〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Studies have shown that the gas huff and puff injection potentially perform better than the continuous gas flooding in enhancing the hydrocarbon recovery in the liquid rich tight reservoirs. During the fracturing stimulation, only part of the induced hydraulic fractures is propped because proppants cannot be carried to the fracture tips. Moreover, some secondary and tertiary fractures may be too narrow to accommodate any proppants. The conductivity of the unpropped fractures is highly dependent on the variation of the in-situ pressure and may be open and close periodically during the huff-n-puff cycles. In this study, the stress-dependent fracture conductivity and its impact on the produced gas huff-n-puff performance are investigated in a liquid rich tight reservoir, considering the existence of the large amount of the unpropped fractures. The experimental data of stress-dependent fracture conductivity is employed first to simulate the dynamic conductivity during the depletion and the gas huff and puff cycles. A reservoir model is then constructed and history-matched based on the reservoir fluid samples and the field production data collected from the Montney liquid rich tight reservoir in Western Canada. Performance of the produced gas huff-n-puff is examined in the targeted reservoir and results show that contributions of the unpropped fractures cannot be ignored, which leads to 7.8% more condensate (i.e., oil) production and 2.8% higher in barrel of oil equivalent (BOE), compared to the case with propped fractures only. The effects of complex fracture geometry and the cluster completion are also investigated and results show that the unpropped fracture contributions towards the condensate production and BOE are even more pronounced in the complicated scenarios. The condensate oil and BOE are 42.0% and 22.9% higher in complex fracture geometry case and 12.4% and 5.6% higher in the fractures with multiple clusters than those scenarios with propped fractures only. This paper provides a better understanding on the potential performance of enhanced hydrocarbons recovery in liquid rich tight gas reservoirs via gas huff-n-puff operations.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Abdelrahman Elkhateeb, Reza Rezaee, Ali Kadkhodaie〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉 〈p〉Traditionally, prediction of facies and permeability for a reservoir rock was one of many challenges in the industry that necessitates advanced and sophisticated evaluation for effective reservoir description. Three wells have been studied in the Perth Basin in Western Australia across the shaly sand of the Irwin River Coal Measures Formation, which contain a comprehensive suite of advanced and conventional logs. Due to the reservoir heterogeneity and the clay distribution, it is very challenging to resolve the effective pore volume, the reservoir facies and how the high permeability zones are distributed within the formation.〈/p〉 〈p〉In this paper, a new technique has been successfully tested on the Shaly Sand by integrating the nuclear magnetic resonance (NMR) and the conventional density log. The method allows the establishment of high-resolution facies classification for the reservoir using an Equivalent Flow Zone Indicator Index (EFZI). The studied core facies have been integrated with the EFZI into a new workflow to distribute facies on a larger scale in the uncored wells.〈/p〉 〈p〉Four hydraulic flow units (HFU) have been defined from one cored well using Flow Zone Indicator approach, with each has a unique FZI value and different permeability model based on core measurements. The EFZI-based high-resolution facies have been validated at several formation depths using the core thin sections to ensure the best calibration will be obtained for facies log, hence the permeability log-to-core match.〈/p〉 〈p〉The methodology will help running an advanced petrophysical analysis for the zone of interest and will reduce the parameters uncertainty. Application of this methodology in the uncored wells has shown very encouraging results, which is believed it can be used in the absence of any core data to resolve the rock typing from the well logs.〈/p〉 〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Atousa Heydari, Kiana Peyvandi〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉In this work, the stainless steel mesh was used to study the effect of metallic porous media on the formation of methane hydrate and some parameters such as induction time, the kinetics growth and the mole of gas consumed have been investigated at a temperature of 3 °C (276.15 K) and a pressure of 760 psi (5.24Mpa). The metallic porous media was able to show better results on the methane hydrate formation relative to the silica gel. Hence the induction time and, eventually, the total time of the hydrate formation process decreased by about 60%. The kinetics growth and the amount of gas consumed increased significantly. Also, the effect of two types of anionic and nonionic surfactants as kinetics promoters studied in this porous media. The result of adding SDS and SDBS at a concentration near the CMC designated that the induction time lasted nearly zero and the total time of the process by SDBS was minimal. It should be noted that the non-ionic surfactant SPAN 80 could not have a positive effect on this porous media. In general, therefore, the results of this research attempts to show that the stainless steel mesh with SDBS possessed high potential in obtaining the industrial purpose of gas hydrate growth and also was significant in the field of energy storage and transport.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0920410519306473-fx1.jpg" width="500" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Shuaishuai Jiang, Xuehua Chen, Yingkai Qi, Wei Jiang, Jie Zhang, Zhenhua He〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The frequency-dependent attenuation and velocity dispersion of seismic responses are closely related to hydrocarbon reservoirs. To further investigate the characteristics of seismic responses caused by pore fluid-bearing reservoirs, the role of gas saturation is analyzed in seismic responses of sand reservoirs characterized by the patchy saturation model. To this end, a novel wave extrapolation method is developed based on the diffusive-viscous wave equation (DVWE) as well as a scheme for an extended local Rytov Fourier (ELRF) approximation within the extrapolation depth interval. Our proposed method considers the presence of fluid mixtures in the porous media, resulting in seismic attenuation and dispersion by the mechanism generally known as wave-induced fluid flow (WIFF). This method enables an accommodation for the lateral variations in slowness, diffusion coefficient and viscosity. Subsequently, the extrapolation is adopted to model the synthetic seismic data of a distributary channel model. During this modeling, a gas-water saturated sand reservoir embedded into one of the channels was used to comparatively analyze the distinct features on its seismic synthetic data. We exhibited the numerical simulation results using the proposed wave extrapolation method here and the traditional acoustic wave equation (AWE) method. A comparison of the simulation results, demonstrates that our proposed numerical method can depict the seismic dispersion and frequency-dependent attenuation as well as the phase delay effects associated with gas-water-saturated sand reservoirs. Furthermore, we compare the seismic responses by changing the gas saturations of the sand reservoir. The gas saturation of the reservoir has significant effects on the seismic characteristics of the numerical modeling data. The numerical modeling method improves our understanding of the mechanisms of seismic frequency-dependent characteristics associated with gas saturations and potentially contributes to better insights into gas reservoir indicators derived from seismic field data.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Shuangdong Chen, Yixiao Gu, Qinxue Dai, Yanshu He, Junlu Wang〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Sirtuin1 (SIRT1), which is regulated by microRNA-34a (miR-34a), can modulate pathophysiology processes, including nonalcoholic fatty liver disease and intestinal ischemia/reperfusion injury. We previously reported that SIRT1, an NAD〈sup〉+〈/sup〉-dependent deacetylase, plays a vital role in the development of neuropathic pain. However, the role of miR-34a/SIRT1 in complete Freund's adjuvant (CFA)-induced inflammatory pain remains unclear. In the present study, we examined miR-34a and SIRT1 in CFA mice. MiR-34a levels increased, while SIRT1 decreased in the spinal cord. Inhibiting miR-34a by intrathecal injection of miR-34a antagomir attenuated CFA-induced pain behavior. Moreover, miR-34a antagomir inhibited the CFA-induced SIRT1 decrease in the spinal cord. Furthermore, the analgesic effect of miR-34a antagomir was abrogated by the SIRT1 inhibitor EX-527. Our data provide support that the underlying mechanisms of miR-34a in promoting inflammatory pain may involve negative regulation of SIRT1.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Jingyi Zhu, Zhaozhong Yang, Xiaogang Li, Zhichao Song, Ziwei Liu, Shiyi Xie〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Liquid foam is an alternative to water-based fracturing fluid due to its great proppant suspension ability. In this work, theoretical and experimental investigations on the settling behavior of the proppants in viscoelastic foams were analyzed on bubble scale. Settling trajectory was captured over time by optical microscope to calculate proppant settling velocity. At room temperature, proppants kept suspended well, but noticeable changes in proppant position could be observed at 70 °C. We concluded that the sedimentation of the proppants at high temperature was divided into three stages, that were drainage-dominated, structure-dominated and fluid-dominated regimes. For the large proppants, quick settling velocity was seen at first due to fast drainage rate. Then bubble pressure force and network force served as drag force exerting on the proppants when the proppants stretched or squeezed the liquid films. During this regime, bubble distribution, the existence of nodes, the length and the orientation of Plateau border leaded to the fluctuation in settling velocity. Lastly, the proppants would also flow freely along Plateau border over time, and the properties of the foam fluid such as viscosity and elasticity provided the drag force to prevent the proppants from settling. It's more likely for small proppants to change to this stage called fluid-dominated regime, but elasticity also guaranteed their low settling velocity. Moreover, in the existence of proppants, the analysis into drainage rate and bubble structure demonstrated the high stability of viscoelastic foams. These results helped understand the sedimentation of proppants in wet foams and broadened the application of viscoelastic foams in hydraulic fracturing.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Zhong-Zhen Chen, Hong-Ze Gang, Jin-Feng Liu, Bo-Zhong Mu, Shi-Zhong Yang〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉A thermal-stable and salt-tolerant biobased zwitterionic surfactant 〈em〉N, N〈/em〉-Dimethyl-〈em〉N〈/em〉-[2-hydroxy-3-sulfo-propyl]-〈em〉N〈/em〉′-phenyloctadecanoyl-1, 3-diaminopropane (SPODP) was successfully obtained from modification of oleic acids which can be regenerated from waste cooking oils, and its structure was characterized using GC-MS, ESI-MS and 〈sup〉1〈/sup〉H NMR approaches. The biobased zwitterionic surfactant demonstrated a strong interfacial activity at high salinity and high temperature conditions at a very low surfactant dosage in formation brine. The ultralow interfacial tension (≤10〈sup〉−3〈/sup〉 mN/m) between crude oil and brine was reached at 0.5 g/L in brine with a wide range compatibility of NaCl up to saturation, Ca〈sup〉2+〈/sup〉 up to 500 mg/L, and temperature up to 95 °C. Meanwhile, it also exhibited strong wetting ability and resistance against adsorption on sands. All the results from this study suggest that the biobased zwitterionic surfactant is promising over varieties of traditional surfactants in applications in alkali free systems in enhanced oil recovery (EOR).〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Zhihua Wang, Ye Bai, Hongqi Zhang, Yang Liu〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Waxy crude oil emulsions exhibit gelation behavior, with nucleation observed within a certain temperature range. A kinetic model was developed and validated based on the thermal parameters obtained from differential scanning calorimetry cooling thermograms, and the nucleation rates of various water-in-waxy crude oil emulsions were determined in the temperature range in which gelation occurs. Although temperature had a dominant effect on the gelation and nucleation behavior of waxy crude oil emulsions, the nucleation rate also increased as the water volume fraction in the emulsion increased. Emulsified water droplets with smaller radii can be completely covered by wax particles, inducing a greater nucleation rate. Subjecting the emulsions to a greater shearing strength also increased the nucleation rate. This study provided new insights into the nucleation processes that occur during the formation of waxy crude oil emulsion gels and, in particular, the role of the emulsification properties.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0920410519306424-fx1.jpg" width="496" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Ulf Jakob F. Aarsnes, Nathan van de Wouw〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The present paper studies the effect of an axial elastic tool (known as a shock sub), mounted downhole in the drill-string, on the occurrence of axial and torsional self-excited vibrations. In particular, we evaluate the feasibility of stabilizing the axial dynamics, dominated by a bilateral (feedback) coupling between the bit-rock interaction and the drill-string wave-equations, through the insertion of a passive down-hole tool. We consider the problem of unwanted drill-string vibrations and explain how these vibrations relate to the so-called axial instability using a distributed parameter (infinite dimensional) model. The equations describing the feedback system causing this instability are derived and then extended to accommodate for the inclusion of the effect of the shock sub. Conditions for the design parameters of the shock sub needed to avoid axial instability are then derived and their practical feasibility are considered.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): S. Mohammadi, M. Papa, E. Pereyra, C. Sarica〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Mechanistic modeling is one of the most popular approaches for the prediction of flow pattern, pressure gradient and liquid holdup in multiphase flow problems. Mechanistic models utilize the mass and momentum conservative equations in combination with a set of closure relationships. These closures, which are developed based on specific experimental setups, considerably affect the performance of the mechanistic models. Moreover, new closure relationships continue to be developed to improve the current mechanistic models. Thus, there is a need for a tool that allows the selection of a set of closure relationships for a given set of conditions. In this direction, this paper presents a methodology that relies on a genetic algorithm to search and select a set of closure relationships for a given experimental (field data) that minimize the error between measured and predicted pressure gradient. The results show the applying the genetic algorithm can improve the performance of the mechanistic model by about 277% when compared to selections of closure relationships made by a subject matter expert for the given data set.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Lifang Cui, He Zhao, Yujun Yin, Chao Liang, Xiaolong Mao, Yingzheng Liu, Qilin Yu, Mingchun Li〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉〈em〉Candida albicans〈/em〉 is an important opportunistic pathogenic fungus in the human body. It is a common microbe inhabiting on the mucosa surfaces of healthy individuals, but may cause infections when the host immune system is weak. Autophagy is a “self-eating” process in eukaryotes, which can recover and utilize damaged organelles and misfolded proteins. Here we investigated the role of the autophagy-related protein Atg11 in 〈em〉C. albicans〈/em〉. Deletion of 〈em〉ATG11〈/em〉 led to the defect in growth under the nitrogen starvation condition. Western blotting and GFP localization further revealed that the transport and degradation of Atg8 was blocked in the 〈em〉atg11〈/em〉Δ/Δ mutant under both the nitrogen starvation and hypha-inducing conditions. Moreover, degradation of both Lap41 (the indicator of the cytoplasm-to-vacuole pathway) and Csp37 (the indicator of mitophagy) was also thoroughly suppressed in this mutant under nitrogen starvation. These results indicated that Atg11 plays an essential role in both non-selective and selective autophagy in 〈em〉C. albicans〈/em〉.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Yi-meng Cao, Meng-yu Liu, Zhuo-wei Xue, Yu Qiu, Jie Li, Yang Wang, Qing-kai Wu〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Promotion of wound healing is one of the most important fields in clinical medical research. This study aimed to evaluate the potential use of a new surface-structured bacterial cellulose(S-BC) biomaterial with human urine-derived stem cells (hUSCs) for wound healing. In vitro, EA.hy926 were inoculated on structured/non-structured bacterial cellulose, and the growth of EA.hy926 on bacterial cellulose in medium with/without conditioned medium of the hUSCs were observed to explore the effect of bacterial cellulose's surface structure and hUSCs-CM on vascular endothelial cell growth. In vivo, we covered wound surface with various BC materials and/or injected the hUSCs into the wound site on group BC, group S-BC, group hUSCs, group BC + hUSCs, group S-BC + hUSCs to evaluate the effect of S-BC and hUSCs on wound healing in rat full-thickness skin defect model. In vitro study, surface structure of S-BC could promote the growth and survival of EA.hy926, and the hUSCs-CM could further promote the proliferation of EA.hy926 on S-BC. In vivo study, wound healing rate of the group BC, group S-BC, group hUSCs was significantly accelerated, accompanied by faster re-epithelialization, collagen production and neovascularization than control group. It is note worthy that the effect of S-BC on wound healing was better than BC, the effect of S-BC + hUSCs on wound healing was better than BC + hUSCs. Moreover, the effect of S-BC combined with hUSCs on wound is better than treated with S-BC or hUSCs alone. All the findings suggest that the combination of S-BC and hUSCs could facilitate skin wound healing by promoting angiogenesis. This combination of the role of stem cells and biomaterial surface structures may provide a new way to address clinical wound healing problems.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Naohiro Katagiri, Satoru Nagatoishi, Kouhei Tsumoto, Hideya Endo〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Methionine aminopeptidase 2 (MetAP2) is one of the effector proteins of S100A4, a metastasis-associated calcium-binding protein. This interaction is involved in angiogenesis. The region of MetAP2 that interacts with S100A4 includes amino acids 170 to 208. A peptide corresponding to this region, named as NBD, has potent anti-angiogenic activity and suppresses tumor growth in a xenograft cancer model. However, the binding mode of NBD to S100A4 was totally unknown. Here we describe our analysis of the relationship between the inhibitory activity and the structure of NBD, which adopts a characteristic helix-turn-helix structure as shown by X-ray crystallographic analysis, and peptide fragments of NBD. We conducted physicochemical analyses of the interaction between S100A4 and the peptides, including surface plasmon resonance, microscale thermophoresis, and circular dichroism, and performed docking/molecular dynamics simulations. Active peptides had stable secondary structures, whereas inactive peptides had a little secondary structure. A computational analysis of the interaction mechanism led to the design of a peptide smaller than NBD, NBD-ΔN10, that possessed inhibitory activity. Our study provides a strategy for design for a specific peptide inhibitor against S100A4 that can be applied to the discovery of inhibitors of other protein-protein interactions.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Xue Mei Li, Soo Jung Kim, Dong-Kyun Hong, Kyoung Eun Jung, Chong Won Choi, Young-Joon Seo, Jeung-Hoon Lee, Young Lee, Chang-Deok Kim〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Kruppel-like factor 4 (KLF4) is a zinc-finger transcription factor that plays a role in terminal differentiation of epidermal keratinocytes. There are conflicting reports regarding the role of KLF4 in tumor development, with both the tumor suppressive and/or oncogenic properties depending on different conditions and cell types. In this study, we investigated the functional importance of KLF4 in cutaneous squamous cell carcinoma (SCC). Immunohistochemistry showed that KLF4 expression was relatively low in SCC lesion compared to normal epidermis. To examine the effects of KFL4, we transduced SCC lines (SCC12 and SCC13 cells) with the KLF4-expressing recombinant adenovirus. Overexpression of KLF4 significantly decreased cell proliferation and colony forming activity. In addition, overexpression of KLF4 markedly reduced invasive potential, along with the downregulation of epithelial-mesenchymal transition (EMT)-related molecules. In a mechanistic study, KLF4 inhibited SOX2, of which expression is critical for tumor initiation and growth of SCC. Further investigations indicated that SOX2 expression is induced by TGF-β/SMAD signaling, and that overexpression of KLF4 inhibited SMAD signaling via upregulation of SMAD7, an important inhibitory SMAD molecule. Based on these data, KLF4 plays a tumor suppressive role in cutaneous SCC cells.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Yan Shen, Shengnan Chen, Yan Zhao〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Hyperglycemia-induced podocyte injury plays a vital role in the development of diabetic nephropathy. Sulfiredoxin-1 (Srxn1) is emerging as a cytoprotective protein that protects from various insults in a wide range of cell types. However, whether Srxn1 is involved in regulating hyperglycemia-induced podocyte injury and participates in diabetic nephropathy remains unknown. In the present study, we aimed to explore the potential role of Srxn1 in regulating high glucose (HG)-induced apoptosis and oxidative stress of podocytes 〈em〉in vitro〈/em〉. Results demonstrated that Srxn1 was induced in HG-stimulated podocytes. The depletion of Srxn1 by Srxn1 siRNA-mediated gene silencing significantly exacerbated HG-induced apoptosis and the production of reactive oxygen species (ROS), while Srxn1 overexpression attenuated HG-induced apoptosis and ROS production. In-depth molecular mechanism research revealed that Srxn1 overexpression promoted the nuclear expression of nuclear factor (erythroid-derived 2)-like 2 (Nrf2) and reinforced antioxidant response element (ARE)-mediated transcription activity. Moreover, results confirmed that Srxn1 increased the activation of Nrf2/ARE signaling associated with inactivating glycogen synthase kinase (GSK)-3β. Notably, the inhibition of GSK-3β significantly reversed Srxn1 silencing-induced adverse effects in HG-treated cells, while the knockdown of Nrf2 abrogated the Srxn1-mediated protective effect against HG-induced podocyte injury. Taken together, our results demonstrated that Srxn1 protects podocytes from HG-induced injury by promoting the activation of Nrf2/ARE signaling associated with inactivating GSK-3β, indicating a potential role of Srxn1 in diabetic nephropathy. Our study suggests that Srxn1 may serve as a potential target for kidney protection.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X19313178-fx1.jpg" width="398" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Yu-Lun Huang, Gota Kawai, Atsuhiko Hasegawa, Mari Kannagi, Takao Masuda〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Reverse transcription of retroviral RNA is accomplished through a minus-strand strong stop cDNA (-sscDNA) synthesis and subsequent strand-transfer reactions. We have previously reported a critical role of guanosine (G) number at 5′-terminal of HIV-1 RNA for successful strand-transfer of -sscDNA. In this study, role(s) of the cap consisting of 7-methyl guanosine (〈sup〉7m〈/sup〉G), a hallmark of transcripts generated by RNA polymerase II, at the 5′-end G nucleotide (5′-G) of HIV-1 RNA were examined. In parallel, contribution of highly conserved GGG tract located at the U3/R boundary in 3′ terminal region of viral RNA (3′-GGG tract) was also addressed. The in vitro reverse transcription analysis using synthetic HIV-1 RNAs possessing the 5′-G with cap or triphosphate form demonstrated that the 5′-cap significantly increased strand-transfer efficiency of -sscDNA. Meanwhile, effect of the 5′-cap on the strand-transfer was retained in the reaction using mutant HIV-1 RNAs in which two Gs were deleted from the 3′-GGG tract. Lack of apparent contribution of the 3′-GGG tract during strand-transfer events in vitro was reproduced in the context of HIV-1 replication within cells. Instead, we noticed that the 3′-GGG tract might be required for efficient gene expression from proviral DNA. These results indicated that 〈sup〉7m〈/sup〉G of the cap on HIV-1 RNA might not be reverse-transcribed and a possible role of the 3′-GGG tract to accept the non-template nucleotide addition during -sscDNA synthesis might be less likely. The 5′-G modifications of HIV-1 RNAs by the cap- or phosphate-removal enzyme revealed that the cap or monophosphate form of the 5′-G was preferred for the 1st strand-transfer compared to the triphosphate or non-phosphate form. Taken together, a status of the 5′-G determined strand-transfer efficiency of -sscDNA without affecting the non-template nucleotide addition, probably by affecting association of the 5′-G with 3′-end region of viral RNA.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X19312926-fx1.jpg" width="307" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Xiong Wang, Huishou Zhao, Wenjun Yan, Yi Liu, Tao Yin, Shan Wang, Miaomiao Fan, Congye Li, Ling Zhang, Ling Tao〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Atherosclerosis is characterized by the accumulation of excess cholesterol in plaques. Reverse cholesterol transport (RCT) plays a key role in the removal of cholesterol. In the present study, we examined the effect of thioredoxin-1 (Trx-1) on RCT and explored the underlying mechanism. We found that Trx-1 promoted RCT 〈em〉in vivo〈/em〉, as did T0901317, a known liver X receptor (LXR) ligand. T0901317 also inhibited the development of atherosclerotic plaques but promoted liver steatosis. Furthermore, Trx-1 promoted macrophage cholesterol efflux to apoAI 〈em〉in vitro〈/em〉. Mechanistically, Trx-1 promoted nuclear translocation of LXRα and induced the expression of ATP-binding cassette transporter A1 (ABCA1). Apolipoprotein E knockout (apoE−/−) mice fed an atherogenic diet were daily injected intraperitoneally with saline or Trx-1 (0.33 mg/kg). Trx-1 treatment significantly inhibited the development of atherosclerosis and induced the expression of ABCA1 in macrophages retrieved from apoE−/− mice. Moreover, the liver steatosis was attenuated by Trx-1. Overall, we demonstrated that Trx-1 promotes RCT by upregulating ABCA1 expression through induction of nuclear translocation of LXRα, and protects liver from steatosis.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 13 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 1〈/p〉 〈p〉Author(s): 〈/p〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Azuma Kosai, Nanao Horike, Yoshiaki Takei, Akihiro Yamashita, Kaori Fujita, Takashi Kamatani, Noriyuki Tsumaki〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The maturation of chondrocytes is strictly regulated for proper endochondral bone formation. Although recent studies have revealed that intracellular metabolic processes regulate the proliferation and differentiation of cells, little is known about how changes in metabolite levels regulate chondrocyte maturation. To identify the metabolites which regulate chondrocyte maturation, we performed a metabolome analysis on chondrocytes of Sik3 knockout mice, in which chondrocyte maturation is delayed. Among the metabolites, acetyl-CoA was decreased in this model. Immunohistochemical analysis of the Sik3 knockout chondrocytes indicated that the expression levels of phospho-pyruvate dehydrogenase (phospho-Pdh), an inactivated form of Pdh, which is an enzyme that converts pyruvate to acetyl-CoA, and of Pdh kinase 4 (Pdk4), which phosphorylates Pdh, were increased. Inhibition of Pdh by treatment with CPI613 delayed chondrocyte maturation in metatarsal primordial cartilage in organ culture. These results collectively suggest that decreasing the acetyl-CoA level is a cause and not result of the delayed chondrocyte maturation. Sik3 appears to increase the acetyl-CoA level by decreasing the expression level of Pdk4. Blocking ATP synthesis in the TCA cycle by treatment with rotenone also delayed chondrocyte maturation in metatarsal primordial cartilage in organ culture, suggesting the possibility that depriving acetyl-CoA as a substrate for the TCA cycle is responsible for the delayed maturation. Our finding of acetyl-CoA as a regulator of chondrocyte maturation could contribute to understanding the regulatory mechanisms controlling endochondral bone formation by metabolites.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Saujanya Acharya, Shubhankar Dutta, Sucheta Chopra, Kakoli Bose〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Human HtrA3 (High temperature requirement protease A3) is a trimeric PDZ bearing propapoptotic serine protease, which is involved in various diseases including cancer and pre-eclampsia. Proposed to be a tumor suppressor, its role as a potential therapeutic target is strongly advocated. Therefore, it becomes imperative to gain insights into its mechanism of action and regulation. Allostery is a well-known mechanism of catalytic activation for many HtrA3 homologs, which opens up avenues for manipulating enzyme functions for therapeutic intervention. In our study, through 〈em〉in silico〈/em〉 and biochemical approaches, we have reported for the first time that HtrA3 shows allosteric behaviour. We identified a novel selective binding pocket, which triggers conformational reorientations through signal propagation to the distantly situated active-site pocket via the functionally important loop regions. Using molecular docking, simulation studies and biochemical studies we have identified the regulatory movements at and around the active site pocket. Our study is the first one to report a non-classical binding site for HtrA3, which is instrumental for formation of a catalytically efficient orthosteric pocket upon substrate binding.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X19313312-fx1.jpg" width="470" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Farnoush Asghari-Paskiabi, Mohammad Imani, Hashem Rafii-Tabar, Mehdi Razzaghi-Abyaneh〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Selenium sulfide is a well-known bioactive chemical whose biosynthesis as a nanoparticle (NP) is a controversial issue. In the present study, we employed 〈em〉Saccharomyces cerevisiae〈/em〉 to generate a novel synthetic process of selenium sulfide NPs. The addition of selenium/sulfur precursors to 〈em〉S. cerevisiae〈/em〉 culture produced NPs, which we isolated and characterized the physicochemical properties, toxicity, and antifungal activity. Transmission electron microscopy indicated the presence of the NPs inside the cells. Selenium sulfide NPs were successfully synthesized with average size of 6.0 and 153 nm with scanning electron micrographs and 360 and 289 nm in Zeta sizer using different precursors. The presence of sulfur/selenium in the particles was confirmed by energy-dispersive X-ray spectroscopy and elemental mapping. Fourier-transform infrared spectroscopy supported the production of selenium sulfide NPs. X-ray diffractograms showed the presence of characteristic peaks of selenium sulfide NPs which were further confirmed by mass spectrometry. The obtained NPs strongly inhibited the growth of pathogenic fungi that belonged to the genera 〈em〉Aspergillus〈/em〉, 〈em〉Candida〈/em〉, 〈em〉Alternaria〈/em〉 and the dermatophytes, while no cytotoxicity was observed in MTT assay. In conclusion, efficient green synthesis of selenium sulfide NPs with appropriate physicochemical properties is possible in bio-systems like 〈em〉S. cerevisiae〈/em〉.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X19313361-fx1.jpg" width="285" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Masashi Maekawa, Hiromi Hiyoshi, Jun Nakayama, Kohki Kido, Tatsuya Sawasaki, Kentaro Semba, Eiji Kubota, Takashi Joh, Shigeki Higashiyama〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Eukaryotic translation initiation factor 3 subunit D (EIF3D) binds to the 5′-cap of specific mRNAs, initiating their translation into polypeptides. From a pathological standpoint, EIF3D has been observed to be essential for cell growth in various cancer types, and cancer patients with high EIF3D mRNA levels exhibit poor prognosis, indicating involvement of EIF3D in oncogenesis. In this study, we found, by mass spectrometry, that Cullin-3 (CUL3)/KCTD10 ubiquitin (Ub) ligase forms a complex with EIF3D. We also demonstrated that EIF3D is K27-polyubiquitinated at the lysine 153 and 275 residues in a KCTD10-dependent manner in human hepatocellular carcinoma HepG2 cells. Similar to other cancers, high expression of EIF3D significantly correlated with poor prognosis in hepatocellular carcinoma patients, and depletion of EIF3D drastically suppressed HepG2 cell proliferation. These results indicate that EIF3D is a novel substrate of CUL3/KCTD10 Ub ligase and suggest involvement of K27-polyubiquitinated EIF3D in the development of hepatocellular carcinoma.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Xiaobo Chen, Chun Xu, Hong He〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Sustained antibiotic release is important to prevent the infections after surgical treatments such as guided tissue regeneration (GTR). Electrospinning provides a simple way to fabricate nanofibers for drug delivery. In this study, a simple method to achieve sustained antibiotic release by introducing mesoporous silica nanoparticles (MSNs)with electrospinning is developed. The nanoparticles entrapped nanofibers (MSNs-PCL) were successfully fabricated, and a sustained release of gentamicin was demonstrated. The gentamicin loaded MSNs-PCL showed strong antimicrobial effects against 〈em〉E. coli〈/em〉, indicated the sustained release behavior and the retained bioactivity. The MSNs-PCL synthesized by electrospinning method shows great potential for biomedical applications such as fabricating GTR membranes.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Abhishek Anil Dubey, Vikas Jain〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉〈em〉Mycobacterium smegmatis〈/em〉 possesses (〈em〉N〈/em〉,〈em〉N〈/em〉-dimethyl-4-nitrosoaniline)-dependent (NDMA) methanol dehydrogenase (Mno) to establish methylotrophy by utilizing methanol as the source of both carbon and energy. In this study, we show that Mno forms decamer and has NADPH as the bound cofactor. Interestingly, Mno uses NDMA and not NADP〈sup〉+〈/sup〉 as an electron acceptor in 〈em〉in vitro〈/em〉 reactions. We further show that the operon 〈em〉mftAD〈/em〉 required for the biosynthesis of mycofactocin, a ribosomally-synthesized electron carrier, is indispensable for the growth of 〈em〉M. smegmatis〈/em〉 on methanol. Our data obtained from 2,6-Dichlorophenolindophenol reduction assays also suggest that Mno uses mycofactocin as an 〈em〉in vivo〈/em〉 electron acceptor for the oxidation of methanol to formaldehyde. We thus provide here biochemical evidence for mycofactocin as an electron carrier in mycobacterial physiology.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 3 July 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Rastine Merat, Aurore Bugi-Marteyn, Ludovic J. Wrobel, Céline Py, Youssef Daali, Christoph Schwärzler, Nicolas Liaudet〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Strategies that aim to limit the adaptive response to pathway inhibition in BRAF-mutated melanoma face the inherent limit of signaling redundancy and multiplicity of possible bypass mechanisms. Drug-induced expression of selected RNA-binding proteins, like the ubiquitously expressed HuR, has the potential to differentially stabilize the expression of many genes involved in the compensatory mechanisms of adaptive response. Here, we detect in 〈em〉BRAF〈/em〉-mutated melanoma cell lines having a higher propensity for adaptive response and in non-responding melanoma tumors, a larger proportion of HuR〈sup〉Low〈/sup〉 cells in the expression distribution of HuR. Using knockdown experiments, we demonstrate, through expression profiling and phenotypic assays, that increasing the proportion of HuR〈sup〉Low〈/sup〉 cells favors the adaptive response to BRAF inhibition, provided that the HuR〈sup〉Low〈/sup〉 state stays reversible. The MAPK dependency of melanoma cells appears to be diminished as the proportion of HuR〈sup〉Low〈/sup〉 cells increases. In single-cell assays, we demonstrate that the HuR〈sup〉Low〈/sup〉 cells display plasticity in their growth expression profile. Importantly, the adaptive over-proliferating cells emerge in the subpopulation containing the HuR〈sup〉Low〈/sup〉 cells. Therapeutic concentrations of lithium salts, although they moderately increase the global expression of HuR, are sufficient to suppress the HuR〈sup〉Low〈/sup〉 cells, induce an overall less resistant expression profile and attenuate in a HuR-dependent manner the adaptive response of melanoma cells in 〈em〉ex vivo〈/em〉 assays. The therapeutic effectiveness of this approach is also demonstrated 〈em〉in vivo〈/em〉 in mice xenografts. This study has immediate clinical relevance for melanoma therapy and opens a new avenue of strategies to prevent the adaptive response to targeted cancer therapy.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Akira Nakashima, Hisateru Yamaguchi, Yu Kodani, Yoko S. Kaneko, Miho Kawata, Hiroshi Nagasaki, Toshiharu Nagatsu, Akira Ota〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Tyrosine hydroxylase (TH), which catalyzes the conversion of 〈span〉l〈/span〉-tyrosine to 〈span〉l〈/span〉-DOPA, is the rate-limiting enzyme in the biosynthesis of catecholamines. It is well known that both α-synuclein and 14-3-3 protein family members bind to the TH molecule and regulate phosphorylation of its N-terminus by kinases to control the catalytic activity. In this present study we investigated whether other proteins aside from these 2 proteins might also bind to TH molecules. Nano-LC-MS/MS analysis revealed that 5′-nucleotidase domain-containing protein 2 (NT5DC2), belonging to a family of haloacid dehalogenase-type (HAD) phosphatases, was detected in the immunoprecipitate of PC12D cell lysates that had been reacted with Dynabeads protein G-anti-TH antibody conjugate. Surprisingly, NT5DC2 had already been revealed by Genome-Wide Association Studies (GWAS) as a gene implicated in neuropsychiatric disorders such as schizophrenia, bipolar disorder, which are diseases related to the abnormality of dopamine activity in the brain, although the role that NT5DC2 plays in these diseases remains unknown. Therefore, we investigated the effect of NT5DC2 on the TH molecule. The down-regulation of NT5DC2 by siRNA increased the synthesis of catecholamines (dopamine, noradrenaline, and adrenaline) in PC12D cells. These increases might be attributed to the catalytic activity of TH and not to the intracellular stability of TH, because the intracellular content of TH assessed by Western blotting was not changed by the down-regulation of NT5DC2. Collectively, our results indicate that NT5DC2 inhibited the synthesis of dopamine by decreasing the enzymatic activity of TH.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Meilin Shi, Lina Dong, Shaohui Zheng, Pingfu Hou, Lulu Cai, Mingming Zhao, Xiuli Zhang, Qi Wang, Jingjing Li, Kai Xu〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉“Bottom-up” method is a popular approach for the preparation of molybdenum disulfide quantum dots (MoS〈sub〉2〈/sub〉 QDs) benefitting from less time consumption and no high-powered sonication required. But the relatively low fluorescent quantum yield of the obtained MoS〈sub〉2〈/sub〉 QDs and the rare study about their 〈em〉in vivo〈/em〉 behavior stimulate us to do more research in this area. In this paper, we proposed a “bottom-up” hydrothermal method to prepare MoS〈sub〉2〈/sub〉 QDs with a quantum yield (QY) of 34.55% by optimizing a series of reaction conditions. The successful fluorescence imaging of tumor cells 〈em〉in vitro〈/em〉 and 〈em〉in vivo〈/em〉 as well as the systematic 〈em〉in vivo〈/em〉 behavior study such as biocompatibility, biodistribution and metabolism route provided the good basis for their wider biomedical applications.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Chinedu I. Ossai〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉To advance the prognosis of progressing cavity Pumps (PCPs) used for artificial lifting, the pump-off need to be identified to forestall failure. This study developed a new technique for determining the Pump-off events Activation Times (PATs) of the PCPs using the transient Water Discharge Rates (WDRs) from coal seam gas producing wells. The Gaussian distribution function parameters of the rolling standard deviations of the water discharge rate (RSWR) and the transition probability of the rolling standard deviations of the water discharge rate (TP_RSWR) were used to build the model. By determining the anomalies in the RSWR signals with the bottom-up segmentation technique and computing the statistical characteristics at the changepoint locations, the steady-state of the WDR signals was established. This steady-state signal, which represents the Operation Transition Level (OTL) between the Normal Operation (NOP) and the Pump-off Event (POE) was used for monitoring the transition of the PCPs' operating status. An algorithm was developed in Python and tested it on field data from 36 coal seam gas wells. The performance of my technique was determined with precision, recall and F1 score, which gave an average value of 94.94%, 92.63%, and 93.56% respectively. It is expected that the implementation of this technique in the real-time estimation of PATs will be vital for reducing PCPs faults seeing that poor PATs detection results in PCPs running dry and consequently failures due to the extreme temperatures and abrasions.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 3 September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 4〈/p〉 〈p〉Author(s): Shan Li, Meilian Yao, Chengqun Niu, Dan Liu, Zhiming Tang, Chunming Gu, Hongyan Zhao, Jing Ke, Shengying Wu, Xiong Wang, Fuyun Wu〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Intracellular Ca〈sup〉2+〈/sup〉 signals play many important cellular functions such as migration, proliferation and differentiation. Store-operated Ca〈sup〉2+〈/sup〉 entry (SOCE) is a major route of Ca〈sup〉2+〈/sup〉 entry in nonexcitable cells. The activation of SOCE requires engagement between stromal interaction molecule 1 (STIM1) molecules on the endoplasmic reticulum and Ca〈sup〉2+〈/sup〉 release-activated Ca〈sup〉2+〈/sup〉 (CRAC) channel Orais (Orai1-3) on the plasma membrane. Accumulating evidence indicates that SOCE plays critical roles in cancer cell proliferation, invasion and metastasis. Here, we used the synthetic intracellular peptides derived from the C-termini of Orai channels to treat the breast cancer cells. We have found that Orai3-CT peptide exhibits stronger binding to STIM1 than Orai1-CT, and Orai3-CT peptide acts in a dominant negative fashion, blocking the STIM1-Orai1 interaction and reducing the Ca〈sup〉2+〈/sup〉 entry and proliferation of breast cancer cells.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉Schematic model for Orai peptide inhibiting the proliferation of breast cancer cells. SOAR domain of STIM1 binding to CT and NT of Orai1 leads to the channel opened and calcium entry. The synthetic intracellular peptides derived from Orai channels competitive interact with STIM1, blocking the STIM1-Orai1 interaction and calcium entry, thus reducing the activation of Ca〈sup〉2+〈/sup〉-dependent transcription factors and inhibiting the proliferation of breast cells.〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X19313075-fx1.jpg" width="283" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Miho Sawada, Hiroyasu Yamamoto, Ayako Ogasahara, Yuya Tanaka, Shinji Kihara〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉 〈h6〉Backgroud〈/h6〉 〈p〉Among various myocyte-derived bioactive molecules (myokines), β-aminoisobutyric acid (BAIBA) is a unique myokine that attenuates skeletal muscle insulin resistance and inflammation, increases browning of white adipose tissue, and enhances hepatic fatty acid oxidation, resulting in upregulated energy expenditure of the whole body. In the present study, we investigated the effects of BAIBA on the vascular endothelial cell function.〈/p〉 〈/div〉 〈div〉 〈h6〉Methods〈/h6〉 〈p〉The mRNA levels of proinflammatory molecules, antioxidants, and their related transcription regulators were examined by quantitative RT-PCR in BAIBA-treated human aortic or umbilical vein endothelial cells (HAEC or HUVEC, respectively), with or without tumor necrosis factor (TNF)-α stimulation. The protein expression and phosphorylation of AMP-activated protein kinase (AMPK) and endothelial nitric oxide synthase (eNOS) were determined by Western blot analysis.〈/p〉 〈/div〉 〈div〉 〈h6〉Results〈/h6〉 〈p〉BAIBA pretreatment significantly suppressed the mRNA levels of the adhesion molecules in the TNF-α-stimulated HAEC and HUVEC. BAIBA treatment significantly increased the mRNA levels of antioxidant molecules, catalase, superoxide dismutases, thioredoxin, and gamma-glutamylcysteine ligases, together with mitochondrial biogenesis-related molecules, nuclear respiratory factor 1, and mitochondrial transcription factor A. In addition, BAIBA treatment significantly increased the transcription factors that regulated these genes [〈em〉i.e.〈/em〉, peroxisome proliferator-activated receptor (PPAR)-δ, PPAR-γ, estrogen-related receptor α (ERRα), and peroxisome proliferator-activated receptor gamma coactivator (PGC)-1β]. Adenovirus-mediated PGC-1β overexpression significantly increased the mRNA levels of all antioxidant molecules. The phosphorylation levels of AMPK and eNOS were unaltered by BAIBA.〈/p〉 〈/div〉 〈div〉 〈h6〉Conclusions〈/h6〉 〈p〉In vascular endothelial cells, BAIBA had antiatherogenic effects through the PGC-1β−ERRα/PPAR-δ and PPAR-γ pathway. This can explain the beneficial effects of exercise on vascular endothelial function.〈/p〉 〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Yanli Lu, Linlin Wang, Jian Zhang, Jun Li, Guohua Wan〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Commensal microbiota modulates the anti-tumor immune response and alters the tumor infiltration of T cells in numerous human malignancies. Moreover, the existence of commensals and microbial metabolites has been directly observed inside numerous epithelial tumors. Their effects on the host immune system, independent of the pre-existing malignancy, are not completely understood. To resolve this issue, we compared immune modulatory roles of the fecal bacteria from healthy individuals and the fecal bacteria from colorectal cancer (CRC) patients. Peripheral blood mononuclear cells that were provided by healthy donors were used as study systems. Overall, fecal bacteria could potently activate the degranulation and cytotoxicity of CD8〈sup〉+〈/sup〉 T cells. Interestingly, fecal bacteria from CRC patients in general induced higher degranulation and higher cytotoxicity than fecal bacteria from healthy individuals. These effects were dependent on the presence of antigen-presenting cells, such as monocytes and B cells, as fecal bacteria added directly to isolated CD8〈sup〉+〈/sup〉 T cells failed to induce high cytotoxicity. Additionally, fecal bacteria from CRC patients induced stronger upregulation of CD80 and NOS2 expression in monocytes than fecal bacteria from healthy individuals. On the other hand, the viability of CD8〈sup〉+〈/sup〉 T cells was significantly reduced with increasing levels of bacterial stimulation. Overall, we demonstrated that fecal bacteria from CRC patients could upregulate degranulation and cytotoxicity of CD8〈sup〉+〈/sup〉 T cells in a manner that was dependent on antigen-presenting cells, and was more proinflammatory than fecal bacteria from healthy individuals.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Xin Yan, Jian Wang, Yanting Zhu, Wei Feng, Cui Zhai, Lu Liu, Wenhua Shi, Qingting Wang, Qianqian Zhang, Limin Chai, Manxiang Li〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The upregulation of osteopontin(OPN) has been found to contribute to the proliferation of pulmonary artery smooth muscle cells(PASMCs), and activation of PPARγ has been shown to suppress OPN expression in THP-1 cells. However, the molecular mechanisms underlying the upregulation of OPN expression and PPARγ agonist modulation of OPN expression in PASMCs remain largely unclear. Here we found that S1P stimulated PASMCs proliferation and up-regulated OPN expression in rat PASMCs, which was accompanied with the activation of phospholipase C(PLC), calcineurin and translocation of NFATc3 to nucleus. Further study showed that inhibition of PLC by U73122, suppression of calcineurin activity by cyclosporine A(CsA) or knockdown of NFATc3 using small interfering RNA suppressed S1P-induced OPN up-regulation. Activation of PPARγ by pioglitazone suppressed S1P-induced activation of calcineurin/NFATc3 signaling pathway and followed OPN up-regulation. Taken together, our study indicates that S1P stimulates OPN expression by activation of PLC/calcineurin/NFATc3 signaling pathway, and activation of PPARγ suppresses calcineurin/NFATc3-mediated OPN expression in PASMCs.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Ryan A. Bennick, Alexis A. Nagengast, Justin R. DiAngelo〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉In Western societies where food is abundant, these excess nutrients are stored as fats mainly in adipose tissue. Fats are stored in structures known as lipid droplets, and a genome-wide screen performed in 〈em〉Drosophila〈/em〉 cells has identified several genes that are important for the formation of these droplets. One group of genes found during this screen included those that regulate mRNA splicing. Previous work from our lab has identified some splicing factors that play a role in regulating fat storage; however, the full complement of splicing proteins that regulate lipid metabolism is still unknown. In this study, the levels of a number of serine-arginine (SR) domain containing splicing factors (RSF1, RBP1, RBP1-like, SF2 and Srp-54) were decreased using RNAi in the adult fat body to assess their role in the control of 〈em〉Drosophila〈/em〉 metabolism. Decreasing SF2 and RBP1 showed increased triglycerides, while inducing RNAi towards RSF1, RBP1-Like and Srp-54 had no effect on triglycerides. Interestingly, the increased triglyceride phenotype in the SF2-RNAi flies was due to an increase in the amount of fat stored per cell while the RBP1-RNAi flies have more fat cells. In addition, the splicing of the β-oxidation enzyme, CPT1, was altered in the SF2-RNAi flies potentially promoting the increased triglycerides in these animals. Together, this study identifies novel splicing factors responsible for the regulation of lipid storage in the 〈em〉Drosophila〈/em〉 fat body and contributes to our understanding of the mechanisms, which influence the regulation of fat storage in adipose-like cells.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Malena Landoni, Tamara Piñero, Luciana L. Soprano, Facundo Garcia-Bournissen, Laura Fichera, Monica I. Esteva, Vilma G. Duschak, Alicia S. Couto〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉This study shows the effects of tamoxifen, a known estrogen receptor antagonist used in the treatment of breast cancer, on the sphingolipid pathway of 〈em〉Trypanosoma cruzi,〈/em〉 searching for potential chemotherapeutic targets. A dose-dependent epimastigote growth inhibition at increasing concentration of tamoxifen was determined. In blood trypomastigotes, treatment with 10 μM showed 90% lysis, while 86% inhibition of intracellular amastigote development was obtained using 50 μM. Lipid extracts from treated and non-treated metabolically labelled epimastigotes evidenced by thin layer chromatography different levels of sphingolipids and MALDI-TOF mass spectrometry analysis assured the identity of the labelled species. Comparison by HPLC-ESI mass spectrometry of lipids, notably exhibited a dramatic increase in the level of ceramide in tamoxifen-treated parasites and a restrained increase of ceramide-1P and sphingosine, indicating that the drug is acting on the enzymes involved in the final breakdown of ceramide. The ultrastructural analysis of treated parasites revealed characteristic morphology of cells undergoing an apoptotic-like death process. Flow cytometry confirmed cell death by an apoptotic-like machinery indicating that tamoxifen triggers this process by acting on the parasitic sphingolipid pathway.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X19312872-fx1.jpg" width="254" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Kaiyue Zhang, Wenwen Yang, Hongbin Yu, Can Fu, Xiaxia Liu, Jian Liu〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The TFIIB-related factor (BRF) family plays vital roles in RNA polymerase (Pol) III transcription initiation. However, little is known about the role of BRF in plants. Here, we report BRF1 and BRF2 are involved in Arabidopsis reproduction. In this study, we generated BRF1 and BRF2 double mutant plants. We found that no homozygous double mutants of 〈em〉brf1brf2〈/em〉 were obtained when 〈em〉brf1〈/em〉 and 〈em〉brf2〈/em〉 were crossed, although 〈em〉brf1〈/em〉 and 〈em〉brf2〈/em〉 mutants individually developed and reproduced normally. Further experiments revealed that heterozygous 〈em〉brf1/〈/em〉 + 〈em〉brf2/〈/em〉 + produced abnormal pollen and had no seeds in some placentas of siliques. Genetic data derived from reciprocal crosses showed that BRF2 plays a dominant role in Arabidopsis reproduction. Taken together, a double mutation of BRF1 and BRF2 results in a high degree of aborted macrogametes and microgametes and complete failure in zygote generation, ultimately leading to sterility.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Hai Yu, Suojun Zhang, Ahmed N. Ibrahim, Jia Wang, Zhong Deng, Maode Wang〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Regulator of chromosome condensation 2 (RCC2) is a regulator of cell-cycle progression linked in multiple cancers to pro-tumorigenic phenomena including promotion of tumor growth, tumor metastases and poorer patient prognoses. However, the role of RCC2 in GBM remains under-investigated. Here, we sought to determine the relevance of RCC2 in GBM, as well as its roles in GBM development, progression and prognosis. Initial clinical evaluation determined significant RCC2 enrichment in GBM when compared to normal brain tissue, and elevated expression was closely associated with a poorer prognosis in glioma patients. Via shRNA inhibition, we determined that RCC2 is essential to tumor proliferation and tumorigenicity 〈em〉in vitro〈/em〉 and 〈em〉in vivo〈/em〉. Additionally, RCC2 was determined to promote radioresistance of GBM tumor cells. Investigation of the underlying mechanisms implicated DNA mismatch repair, JAK-STAT pathway and activated transcription of DNA methyltransferase 1 (DNMT1). For validation, pharmacologic inhibition via administration of a DNMT1 inhibitor demonstrated attenuated GBM tumor growth both 〈em〉in vitro〈/em〉 and 〈em〉in vivo〈/em〉. Collectively, this study determined a novel therapeutic target for GBM in the form of RCC2, which plays a pivotal role in GBM proliferation and radio-resistance via regulation of DNMT1 expression in a p-STAT3 dependent manner.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Ke Gong, Zi-Jun Gong, Pin-Xiang Lu, Xiao-ling Ni, Sheng Shen, Han Liu, Ji-Wen Wang, De-Xiang Zhang, Hou-Bao Liu, Tao Suo〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Gallbladder carcinoma (GBC) is always diagnosed at an advanced stage, and patients often miss the opportunity for surgery. Gemcitabine (GEM) and platinum-based drugs, including oxaliplatin (OXA), are mainstays of chemotherapy. However, drug resistance causes treatment failure. Hence, salvage mechanisms are critical to improve outcomes. This study revealed the positive correlation between placenta-specific protein 8 (PLAC8) overexpression and PD-L1 overexpression in GBC. Given the roles of PLAC8 and PD-L1 in chemotherapy resistance, GEM-resistant and OXA-resistant cell lines (SGC966GR and SGC966OR, respectively) were established to test whether and how PLAC8 and PD-L1 function in chemotherapy resistance. Drug-insensitive SGC966GR and SGC966OR cells upregulated MRP and MDR1 and had high expression of PLAC8. PLAC8 blockade using siRNA reversed chemotherapy resistance and downregulated MRP and MDR1 in SGC966GR and SGC966OR cells, suggesting that PLAC8 mediates chemotherapy resistance in GBC. Consistent with the increased mRNA levels of PD-L1 after the acquisition of resistance, PLAC8 knockdown reduced PD-L1 mRNA expression in SGC966GR and SGC966OR cells. In conclusion, PLAC8 overexpression in GBC patients positively correlated with PD-L1 expression. PLAC8 conferred resistance to GEM and OXA by upregulating PD-L1 expression, and PLAC8 or PD-L1 blockade may have potential for overcoming chemotherapy resistance, providing therapeutic options for chemotherapy-refractory GBC patients.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Yuya Miki, Tomoaki Morioka, Atsushi Shioi, Kenta Fujimoto, Takeshi Sakura, Hideki Uedono, Yoshinori Kakutani, Akinobu Ochi, Katsuhito Mori, Tetsuo Shoji, Masanori Emoto, Masaaki Inaba〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Oncostatin M (OSM) is a cytokine of the interleukin-6 family and plays a role in various disorders such as cancer and inflammatory diseases, which are often accompanied by skeletal muscle atrophy, or sarcopenia. However, the role of OSM in the regulation of skeletal muscle mass remains to be identified. In this study, we investigated the effect of OSM on C2C12 myotube formation 〈em〉in vitro〈/em〉. C2C12 myoblasts were induced to differentiate into myotubes for 3 days and then treated with OSM for 24 or 48 h. The diameter of differentiated C2C12 myotubes were reduced by 18.7% and 23.3% compared to control cells after treatment with OSM for 24 and 48 h, respectively. The expression levels of MyoD and myogenin were decreased, while those of atrogin-1, CCAAT/enhancer binding protein δ, and OSM receptor were increased in C2C12 myotubes treated with OSM for 24 h compared to control cells. Furthermore, the inhibitory effect of OSM on myotube formation was significantly attenuated by pretreatment with an inhibitor of signal transducer and activator of transcription (STAT) 3 or by knockdown of 〈em〉Stat3〈/em〉. Finally, the OSM-induced changes in the expression levels of MyoD, myogenin, and atrogin-1 were reversed by pretreatment with an inhibitor of STAT3 or by 〈em〉Stat3〈/em〉 knockdown in C2C12 myotubes. In conclusion, OSM induces C2C12 myotube atrophy by inhibiting myogenic differentiation and activating muscle degradation in a STAT3-dependent manner.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Fuwei Yu, Hanqiao Jiang, Fei Xu, Zhen Fan, Hang Su, Junjian Li〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉In this paper, a new fabrication method was reported for establishment of a 2.5D reservoir micromodel, which incorporated 3D geometry of porous media and visualization of 2D microfluidic chips. Flow physics such as imbibition, rison and rheon were visualized in the new 2.5D reservoir micromodel through water flooding experiments in water-wet and oil-wet 2.5D reservoir micromodels. Corresponding results demonstrated the strong capacity of the presented 2.5D reservoir micromodel to mimic the real 3D porous media. Besides, four theoretical patterns concerning residual oil distributions were obtained based on water flooding, surfactant flooding and polymer flooding experiments. Furthermore, imbibition of a Winsor I type surfactant system was investigated, accompanied by explanation and visualization of two major enhanced oil recovery (EOR) mechanisms, namely microemulsion imbibition and residual oil solubilization, which confirmed the assumptions made based on core imbibition experiments.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Mohamed R. Shalaby, Liyana Nadiah Osli, Stavros Kalaitzidis, Md Aminul Islam〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Thermal maturity and palaeodepositional environment of the Taratu Formation has been studied by evaluating its geochemical properties and organic petrographical features. Geochemical properties of the Cretaceous-Palaeocene Taratu source rock that are identified through pyrolysis indicate that this formation has excellent organic matter quality, quantity and hydrocarbon generation potential. Only the Cretaceous-aged sequence from this formation is thermally mature, with Tmax values ranging from 429 °C to 459 °C, while Palaeocene samples are found to be thermally immature. Organic matter of the Taratu Formation comprises primarily of oil and gas prone kerogen type II-III and gas prone kerogen type III, which is reflected by high HI (165.0–327.5 mg HC/g TOC) and low OI (5.00–25.7 mg CO2/g TOC) values. Tissue Preservation Index (TPI) and Gelification Index (GI) indicates that the Taratu Formation was previously deposited in a limnic environment. Further assessment of the source rock's palaeodepositional environment through correlating cross-plots of various biomarker data and evaluation of organic petrography suggests that the formation was subjected to brackish water influx.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 180〈/p〉 〈p〉Author(s): Zulong Zhao, Yu Shi, Daoyong Yang, Na Jia〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉A novel and pragmatic technique has been developed and validated to quantify gas exsolution of alkane solvent(s)–CO〈sub〉2〈/sub〉–heavy oil systems with consideration of interface mass transfer for each gas component under nonequilibrium conditions. Experimentally, constant composition expansion (CCE) tests of three alkane solvent(s)–CO〈sub〉2〈/sub〉–heavy oil systems are conducted with a visualized PVT cell under equilibrium and nonequilibrium conditions. The liquid height and pressure of the system are continuously monitored and recorded during experiments to measure, respectively, the bubblepoint pressure, pseudo-bubblepoint pressure, and the entrained gas volume. With the assumption of instantaneous nucleation, a mathematical model which integrates Peng-Robinson equation of state (PR EOS), Fick's second law, and nonequilibrium boundary condition has been developed to quantify not only the amount of the evolved gas and entrained gas, but also the dynamic composition of gas phase as a function of time. Once the deviations between the measured gas volumes and the calculated ones have been minimized, the mass transfer Biot number, individual diffusion coefficient, and interface mass transfer coefficient of each gas component as well as the gas bubble number are determined. Increases in experimental temperature and pressure are found to impose opposite effects on diffusion coefficient during gas exsolution processes. The diffusion of each gas component is found to be faster when the temperature becomes higher or the initial pressure becomes lower. Either CO〈sub〉2〈/sub〉 or C〈sub〉3〈/sub〉H〈sub〉8〈/sub〉 diffuses faster than CH〈sub〉4〈/sub〉 in the liquid phase under the same condition. In addition, the interface mass transfer coefficients, with an order of CO〈sub〉2〈/sub〉 〉 CH〈sub〉4〈/sub〉 〉 C〈sub〉3〈/sub〉H〈sub〉8〈/sub〉, obtained in this study are much higher than those collected in the literature since the nonequilibrium conditions greatly facilitate gas exsolution. The determined mass transfer Biot numbers in this study are large, indicating that the bulk resistance due to molecular diffusion inside the heavy oil dominates the gas exsolution process compared to the interfacial resistance.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Jingdong Liu, Tao Liu, Youlu Jiang, Tao Wan, Ruining Liu〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The distribution, origin, and evolution of overpressure in the petroliferous basin are important problems that need to be addressed for oil and gas exploration. The distribution and origin of overpressure in the Shahejie Formation in the northern Dongpu Depression are analyzed based on geological studies, logs, and pressure data. The contribution ratios of different overpressure origins are quantified, and the evolutionary stages of overpressures of different origins are further divided. The results show that the formation pressure coefficients of Shahejie Formation in the Dongpu Depression are mainly within the range of 0.9–1.5. The overpressures are mainly distributed in the Sha-3 and Sha-4 Members of the Haitongji sag, the Central uplift belt and the Qianliyuan sag. From the sag to its surrounding area, the formation pressure coefficient gradually decreases. The high deposition rate and strong hydrocarbon generation are the main causes of overpressure formation in the Shahejie Formation in the Dongpu Depression. Based on the stress–strain characteristics of different origin overpressures and the log response parameters, two models, acoustic travel time-effective vertical stress and electrical resistivity-effective vertical stress, are established to identify and quantify the different origin overpressures. The calculation results for the area from the Haitongji sag and Qianliyuan sag to the Central uplift belt show that the main cause of overpressure gradually changes from both disequilibrium compaction and hydrocarbon generation to disequilibrium compaction as the main factor, with the contribution of disequilibrium compaction to overpressure in the Central uplift belt at about 87%. The Sha-3 Members of the Shahejie Formation in the Haitongji sag and the Qianliyuan sag are more strongly affected by hydrocarbon generation, which accounts for 42% and 47.5% of overpressure origin, respectively. There are five stages in the evolution of overpressure in the Shahejie Formation in the northern Dongpu Depression: normal compaction (before 35 Ma), mixed pressurization (35-27 Ma), uplift and pressure release (27-17 Ma), disequilibrium compaction (17-11 Ma), and secondary mixed pressurization (12 Ma-present).〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Zhiwei Zeng, Hongtao Zhu, Lianfu Mei, Jiayuan Du, Hongliu Zeng, Xinming Xu, Xiaoyun Dong〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Few studies have focused their attentions on the source-to-sink (S2S) system from a multiple-level perspective. We have proposed an effective multilevel S2S subdivision approach based on the integrated study of seismic geomorphology, well-based facies, seismic facies and multi-attribute. The inspiration of multilevel S2S subdivision method is drawn mainly from the modern Diancang Mountain- Lake Erhai S2S system with different-orders of drainage divides. The Paleogene Central Uplift system during the syn-rift stage in Xijiang Sag, Pearl River Mouth Basin, South China Sea, provides a suitable example to test the approach and analyze the multilevel S2S characteristics of an ancient uplift system. The result shows that the Central Uplift system can be divided into three second-level sub-S2S systems (R-A, R-B and R-C), and can be further sub-divided into twelve third-level sub-S2S systems (A1∼A5, B1∼B5 and C1∼C2). Generally, the A1∼A5 and B1∼B4 systems are developed at the gentle slopes and deposited a series of narrow-shaped braided deltas with higher exploration potential, whereas the B5 and C1∼C2 systems are developed at the relatively steep slopes and deposited a series of lobate shaped turbidite and fan deltas with lower reservoir quality. Based on the multilevel S2S analysis, the ancient uplift can be scientifically sub-divided and compared with each sub-S2S system, including the sediment-transport type and distance, sedimentary facies characteristics and stacking relationship with the hydrocarbon source rocks. These in-depth and detailed studies have practical significance for the exploration of favorable reservoir sandbodies and stratigraphic-lithologic traps.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Paola Francini Fávero, Victor Augusto Vieira de Lima, Priscila Helena dos Santos, Ana Paula Marques Andrade, Leonardo Oliveira Mendes, Francis Lopes Pacagnelli, Anthony César de Souza Castilho〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉To assist in evaluating and quantifying tissue changes, fractal dimension (FD) is a useful method for assessing the organization in an image from fractals that describes the amount of space and the self-similarity of the structure, once FD detects subtle morphological changes and performs functional quantitative measures. Here, we hypothesized that fractal analysis may be different in functional and regressing bovine corpus luteum (CL) and may be correlated with differential expression of genes involved in extracellular matrix remodeling. CL presents two developmental stages, the functional and regressing CL, according to progesterone levels and morphology. First, we found a lower FD in functional CL using HE staining and picrosirius red approach. Additionally, we found a great amount of total collagen in regressing CL. Regarding gene expression, we showed an up regulation of 〈em〉COL1A1, COL1A2, MMP2〈/em〉, and 〈em〉MMP14〈/em〉 and a down regulation of 〈em〉TIMP1〈/em〉 and 〈em〉TIMP2〈/em〉 in regressing CL compared to the functional one. Thus, we concluded that differential FD observed during luteal regression is an effective method to evaluate the tissue changes observed during luteal development in cattle and is related to differential quantity of genes involved in extracellular matrix remodeling.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Tangliang Zhao, Xiaolong Liang, Junming Chen, Yi Bao, Anbang Wang, Xinxin Gan, Xin Lu, Linhui Wang〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Angiopoietin-like proteins (ANGPTLs) 〈u〉comprise〈/u〉 a group of proteins that are structurally similar to angiopoietins. In our previous studies, we found that ANGPTL3 can inhibit sorafenib resistance in renal cell carcinoma (RCC). According to bioinformatics analysis based on data in the Cancer Genome Atlas (TCGA), we found that expression of ANGPTL3 was significantly lower in RCC tissues than in adjacent tissues and that disease-free survival and overall survival were significantly shorter in patients with lower ANGPTL3 levels than in those with higher ANGPTL3 levels. Consistent with these results, we demonstrated that RCC tissues exhibited lower ANGPTL3 mRNA and protein expression levels than paired adjacent tissues. Moreover, we found that ANGPTL3 upregulation was associated with better clinical outcomes in RCC patients. ANGPTL3 overexpression inhibited the metastatic ability in RCC cells. Mechanistically, ANGPTL3 〈u〉binds〈/u〉 to vasodilator-stimulated phosphoprotein (VASP) and inhibits its phosphorylation at amino acid 157 in RCC cells. Finally, ANGPTL3 expression and VASP-157 phosphorylation 〈u〉may〈/u〉 be combined to predict the prognosis of RCC patients. Overall, our findings describe the role of ANGPTL3 in inhibiting RCC metastasis and thus provide new molecular 〈u〉markers〈/u〉 for RCC treatment and prognosis.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 27 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 516, Issue 3〈/p〉 〈p〉Author(s): Yong Won Choi, Ga Eun Nam, Young Hwa Kim, Jung Eun Yoon, Ji Hee Park, Jang Hee Kim, Seok Yun Kang, Tae Jun Park〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉B-Raf〈sup〉V600E〈/sup〉 oncogene mutation occurs in various cancers and is associated with tumor initiation. However, genetic modification of B-Raf〈sup〉V600E〈/sup〉 in cells induces MAPK activation and results in oncogene-induced senescence. Overcoming the oncogene-induced senescence by B-Raf〈sup〉V600E〈/sup〉 requires activation of another oncogene pathway, such as AKT signaling. In the present study, we explored the factors involved in overcoming the senescence program in cells activated by B-Raf〈sup〉V600E〈/sup〉 and AKT signaling. B-Raf〈sup〉V600E〈/sup〉 activation caused a feedback inhibition of AKT phosphorylation and resulted in downregulation of FoxM1, one of the AKT downstream components. AKT activation by PTEN downregulation induced FoxM1 expression, and co-expression of B-Raf〈sup〉V600E〈/sup〉 and FoxM1 overcame the cellular senescence. These observations suggested that FoxM1 is critical downstream gene of AKT and functions to overcome B-Raf〈sup〉V600E〈/sup〉-induced senescence.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Nabil M. Al-Areeq, Abubakr F. Maky, Ahmed S. Abu-Elata, Mahmud A. Essa, Salem S. Bamumen, Gamal A. Al-Ramisy〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The Masilah oilfields are rich-oil provinces in the Sayun-Masilah Basin. The petroleum system including essential elements and processes is a very important for understanding and development of oilfield to further explore hydrocarbons in the whole basin. Integrated geochemical, geological, petrological and petrophysical analyses were performed on the source and reservoir rocks in the Masilah oilfields to gives information about the complete petroleum system. The Masilah oilfields filled with syn- and post-rift sediments, including a self-contained source-reservoir system. The geochemical results indicate that the organic-rich shales of the Madbi Formation are considered as oil-source rocks, with high total organic carbon content of more than 5.0 wt% TOC and oil-prone kerogen Types II and I. The Madbi shales are currently characterized by thermally mature level, within the oil generation window. Geochemical biomarker correlations of oil-source rock indicate that there is a genetic link between the oils and the Late Jurassic Madbi shale source rock in the Masilah oilfields. Therefore, the geochemical characteristics of the Madbi source rock have been collaborated into basin models and illustrate that the Madbi source rock had passed the peak-oil generation window during the Late Cretaceous to present-day and that large amounts of oil were generated. The generated oil was expelled and migrated to the overlain Early Cretaceous Qishn clastic reservoir rocks through faults during the Oligocene-Middle Miocene. The oil was then accumulated and trapped into horst and tilted fault blocks that initial formed during the Late Jurassic-Early Cretaceous rifting.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Jeffrey O. Oseh, M.N.A. Mohd Norddin, Issham Ismail, Abdul R. Ismail, Afeez O. Gbadamosi, Augustine Agi, Shadrach O. Ogiriki〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉With increasing strict environmental laws, there is a need for operators to design a benign oil-based muds (OBMs). In this study, oil extracted from non-edible sweet almond seed (SASO) was used as the continuous phase to formulate biodiesel-based drilling mud (BBDM). Different properties of the BBDM including the economic viability were evaluated and compared with those of the diesel OBM to determine the applicability of these properties for drilling fluids and their level of toxicity to the environment. The results indicate that the rheology, filtration properties, electrical stability, thermal stability and shale swelling inhibition performance of the BBDM are comparable with those of the diesel OBM. The biodiesel has a significantly higher flash point of 169 °C than the diesel with 78 °C; demonstrating that it can supply better fire safety than the diesel. The data of the toxicity test indicate SASO to be safer and less harmful compared to diesel #2 type used. After the 28-day period of biodegradation tests, the BBDM and the diesel OBM showed 83% and 25.2% aerobic biodegradation with 〈em〉Penicillium〈/em〉 sp., respectively. The low branching degree and absence of aromatic compounds in the BBDM contributes for its higher biodegradation. The economic evaluation of the BBDM indicates low cost of formulation and waste management. The general outcome of the tests illustrates that SASO has the potentials of being one of the technically and environmentally feasible substitutes for the diesel OBM.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Bao Jia, Jyun-Syung Tsau, Reza Barati〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Molecular diffusion is an important EOR mechanism in naturally fractured reservoirs. However, the laboratory-measured diffusion coefficient in the fractured porous media is still limited; and grid sensitivity analysis is missing in the literature when the single-porosity system is applied to history match the pressure decline curve. We aimed to fill the gaps using Radial Constant Volume Diffusion (RCVD) method experimentally to investigate diffusion coefficients at different pressures in hydrocarbon saturated porous media. A special in-house cell is designed to hold the core sample in the center with the annulus around simulating the fracture. The core is initially saturated with oil while the annulus is filled with CO〈sub〉2〈/sub〉 at the same pressure. During the measurements, the system pressure declines as gas diffuses into the oil phase until it reaches chemical equilibrium. The pressure decline curve is history matched to determine the diffusion coefficient. The initial pressure is 597 psi, and the diffusion coefficient is determined in numerical models accordingly. Molecular diffusion coefficients are estimated at different experiment periods to reveal the pressure-dependency. A workflow is proposed to obtain effective diffusion coefficients in dual-porosity models that could be extended to multi-component systems. Besides, flow characteristics in the RCVD system are characterized and capillary pressure effect is investigated in this study.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): R. Farajzadeh〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉To mitigate the negative impacts of hydrocarbon fuels on climate change complementary decision tools should be considered when selecting or evaluating the performance of a certain production scheme. The exergy analysis can give valuable information on the management of the oil and gas reservoirs. It can also be used to calculate the CO〈sub〉2〈/sub〉 footprint of the different oil recovery mechanisms. We contend that the concept of exergy recovery factor can be used as a powerful sustainability indicator in the production of the hydrocarbon fields. The exergy-zero recovery factor is determined by considering exergy balance of full cycle of hydrocarbon-production systems and defines boundaries beyond which production of hydrocarbons is no longer sustainable. An example of the exergy analysis is presented in the paper.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Ahmad Ghasemi, Hossein Jalalifar, Saeid Norouzi Apourvari, Mohammad Reza Sakebi〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Wellbore instability is a big challenge in shale formations. The objective of this study is to investigate the effectiveness of a natural additive as a shale inhibitor. The capability of this additive for reducing ion movement into shale and plugging its pore throats has been tested and compared with salts and nano particles. The ions and water movement into shale and resultant swelling was measured by modified gravimetric, swelling and modified immersion tests. The results showed that using Henna extract could reduce the ion and water movement into shale. In addition, the results of pore pressure tests showed that 3 wt % of Henna extract are more effective than nano particles and could completely plug the pore throats of shale while the mud rheological properties are still maintained. The findings of this study show that the Henna extract could be considered as a cost-effective and an environmentally-friendly shale inhibitor.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0920410519306345-fx1.jpg" width="500" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: Available online 29 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Jaehak Lee, Ilju Kim, Eunsu Yoo, Seung Joon Baek〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Non-steroidal anti-inflammatory drug activated gene-1 (NAG-1), also known as growth differentiation factor 15 (GDF15), is a TGF-β (transforming growth factor beta) superfamily protein with a distinctive secretion pathway. NAG-1 is associated with multiple diseases including cancer, wherein it plays a role in both pro- and anti-cancer activities. We previously reported that NAG-1 is translocated to different subcellular compartments and its activity depends on its localization. In this paper, we report that the transfection of a novel peptide corresponding to the nuclear localization signal (NLS) of NAG-1 blocks its translocation to the nucleus. Further, accumulation of NAG-1 in the cytoplasm decreased mitochondrial membrane potential, thus implying apoptosis induction as a consequence. Overall, our results indicate that the novel peptide derived from NAG-1 NLS sequence is a promising tool for enhancing the anti-tumorigenic activity of NAG-1.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X19316134-fx1.jpg" width="350" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: Available online 29 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Yanjun Zeng, Qingwu Qin, Keyu Li, Haitao Li, Chao Song, Yi Li, Minhui Dai, Fengyu Lin, Zhi Mao, Qian Li, Yuan Long, Yifei Fan, Pinhua Pan〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉To explore the effect of double-stranded RNA-dependent kinase (PKR) in acute lung injury (ALI) and resultant acute respiratory distress syndrome (ARDS). A mouse model of lipopolysaccharide (LPS)-induced ALI was used to evaluate the levels of phosphorylated (p)-PKR and NLRP3 in lung tissue, and the protective effects of a PKR inhibitor on lung injury. And in vitro, macrophages were incubated with LPS, with or without PKR inhibitor pre-treatment. It was observed that the levels of p-PKR protein and NLRP3 protein were significantly increased compared with those in control tissues after LPS administration. Meanwhile, treatment with PKR inhibitor decreased inflammation, injury score, wet/dry weight ratio, bronchoalveolar lavage fluid (BALF) protein levels, neutrophil count in BALF, myeloperoxidase activity and expression of high-mobility group box1(HMGB1) and interleukin(IL)-1β in the lungs of LPS-challenged mice. In vitro, we demonstrated that the levels of p-PKR and NLRP3, and cell mortality rate were increased in macrophages which were incubated with LPS compared with those without LPS administration, and PKR inhibitor significantly suppressed the level of NLRP3, caspase-1, HMGB1 and IL-1β. These results indicate that PKR plays a key role in ALI through NLRP3-pyrotosis pathway and pharmacological inhibition of PKR may have potential therapeutic effects in the treatment of patients with ALI and ARDS.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 29 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Marcelo Gomes Granja, Luis Eduardo Gomes Braga, Raphael Monteiro de Oliveira, Eliezer de Mello Silva, Cassiano Felippe Gonçalves-de-Albuquerque, Adriana Ribeiro Silva, Hugo Caire de Castro-Faria-Neto, Aline Araujo dos Santos, Elizabeth Giestal-de-Araujo〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Trophic factors are involved in different cellular responses. Previously we demonstrated that IL-4 treatment induces an increase in retinal ganglion cell survival (RGCS) and regulates cholinergic differentiation of retinal cells 〈em〉in vitro〈/em〉. Data from literature show that IGF-1 also promotes RGCS, an effect mediated by PI-3K/AKT pathway. The aim of this study was to investigate the role of IGF-1 and IGF-1R on RGCS mediated by IL-4 treatment and the role of M1 acetylcholine receptors in this effect. Here we show that the effect of IL-4 on RGCS depends on IGF-1 and IGF-1R activation, the PI-3K/AKT and NFkB intracellular pathways and depends on M1 mAChRs activation. IGF-1 increases the levels of M1 mAChRs in 15min, 45min, 24 h and 48 h in mixed retinal cells culture, modulates the levels of IL-4, pIGF-1R, IGF-1R. IL-4 modulates IGF-1, pIGF-1R and IGF-1R levels in different time intervals. These results put in evidence a crosstalk between IL-4 and IGF-1 and a role of M1 mAChRs, IGF-1 and IGF-1R in RGCS mediated by IL-4.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Yongqiang Li, Jianfang Sun, Hehua Wei, Suihong Song〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Based on the analysis of the characteristics of modern karst and paleokarst outcrops, this study summarizes the features of subsurface reservoirs by using core, logging, seismic and production data, establishes the structural model of fault-controlled karst reservoirs, and points out the guiding significance of this structural model for development and production in the Tahe oilfield. Modern karst in southern China shows the three-component structural characteristics of fault-controlled karst which are fault core, damage zone, and host rock. The cavern is developed in the fault core and the fracture-vugs are fully developed. Paleokarst outcrops reveal the evolutionary process of fault-controlled karst reservoirs, the characteristics of caverns along the fault and the surrounding fracture-vuggy features. Seismic structure tensor attributes, ant-track attributes and amplitude spectrum gradient attributes are used to describe the external geometry, caverns, and large-scale fractures of fault-controlled karst reservoirs, and the small fractures and vugs can be described by using cores. According to the characteristics of modern karst, paleokarst and subsurface reservoirs, three architectural patterns of fault-controlled cavern complexes, fault-controlled caverns and fault-controlled vugs are summarized. Different architectural patterns of karst reservoirs lead to different production capacities. The architectural patterns have important guiding significance for new drilling and water or gas injection to improve oil recovery.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): M.E. Emetere〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Recently, significant reserves of oil were discovered off the coast of Lagos State, southwest Nigeria. The lateral situation or compositions of the oil-bearing deposits is not clear because these findings are based on a particular position of a single well. The conventional methods of oil exploration have shown a fundamental theoretical shortcoming that may not be resolved, hence scientists or professionals may have to keep modifying the theories to explore different geological terrain. In this study, the remote sensing technique was adopted. The dataset were adopted from MERRA, Landsat 8 OLI and ETM imagery. The temperature distributions (soil and geothermal temperature) over the research area were calculated using existing algorithms to compliment the satellite remote sensing results. A prospective hydrocarbon deposits was suggested for further research work.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): T.N. Phan, Y.M. Zapata, C.S. Kabir, J.D. Pigott, M.J. Pranter, Z.A. Reza〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉 〈p〉Despite the recent growth in oil production from unconventional reservoirs, existing hydraulically-fractured horizontal wells face challenges of poor recovery with the rapid production decline over a short life span. Enhanced recovery techniques, such as cyclic CO〈sub〉2〈/sub〉 injection can be a solution to this impending problem and lead to energy independence for the foreseeable future. However, mechanisms occurring around the hydraulically fractured wells are far from fully understood. The primary motivation of this study revolves around addressing this limitation. Specifically, we explored the evolution of various thermophysical properties occurring around hydraulically-fractured wells in liquid-rich unconventional reservoirs using a holistic, integrated modeling framework.〈/p〉 〈p〉Available well-logs and other data from Howard County in the Midland Basin formed the basis for constructing representative 3D structural models that capture the Midland Basin stratigraphy. We used a simulator to create multistage hydraulic fractures that allowed integration into numerical reservoir-flow simulation models. Then, both convective and diffusive flow within a multicomponent compositional simulation modeling paradigm is used to examine the role of molecular diffusion in performance under cyclic CO〈sub〉2〈/sub〉 injections in hydraulically-fractured well.〈/p〉 〈p〉The simulation results indicate that molecular diffusion yields an incremental oil recovery of 6% compared to models that do not. Our analysis reveals different thermophysical properties transition from near wellbore regions to outer regions into the rock matrix. Changes in total mole fractions of CO〈sub〉2〈/sub〉, methane, and hydrocarbons with C7+ fraction, pressure and saturation variation, viscosity reduction and the surface tension over 14 injection-soaking-production cycles are tracked. The analyses of the evolution of these thermophysical properties provide us with means to evaluate the efficiency of the solvent injection process. The simulation results explain how, when, and where CO〈sub〉2〈/sub〉 disperses into the reservoir.〈/p〉 〈/div〉 〈/div〉

Description: 〈p〉Publication date: September 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 180〈/p〉 〈p〉Author(s): Wanderson Lambert〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉In this work, we propose a technique to solve the system of equations of mass balance for the salt solution and mass balance for salt in the solid phase introduced in the paper “Mathematical model of dissolution of particles of NaCl in well drilling: Determination of mass transfer convective coefficient”. In that paper, authors claimed that there is no technique to solve analytically the provided system of equations (actually, authors claimed that is possible an analytical solution for the “steady state” solution), however, from the mathematical viewpoint, the system of equations modelling this transport is a linear hyperbolic system of equations and it is possible to obtain the solution of this system by using the technique of characteristic waves. Since the model proposed in the paper cited can be used for several different transport equation models, it worth to present the general technique and solution that can be applied in other models in the context of transport phenomena.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: November 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 182〈/p〉 〈p〉Author(s): Sheng Fu, Zhen Liu, Yi-ming Zhang, Xin Wang, Ning Tian, Ling Li, Hui-lai Wang, Tao Jiang〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The Wulan-Hua Sag in the south of Erlian Basin has large oil and gas resource, whereas the source rocks genetic potential and oil-rock correlation in its Aershan Formation (K1ba) and First member of Tengge'er Formation (K1bt1) are still unclear. We performed organic geochemistry analyses of oil and mudstone samples to divide crude oil types, evaluate source rock potential, and establish relatively accurate oil-source correlation. The results indicate that the source rocks in K1ba and the Lower interval in First member of Tengge'er Formation (LK1bt1) belong to good source rocks, characterized by high organic matter abundance, oil-prone kerogen type, and relatively high thermal maturity. K1ba and K1bt〈sub〉1〈/sub〉 crude oil samples were divided into two types sourced from different Wulan-Hua source rocks. Type A oil is distributed in the K1ba and LK1bt1 of Saiwusu uplift and Hongjing uplift, and featured by a low gammacerane amounts (the majority of gammacerane/C〈sub〉30〈/sub〉H 〈 0.30), and high Pr/Ph (ranging from 0.18 to 1.18, with mean value of 0.78). It has high mature organic matter mainly originated from terrestrial plant and dominant terrestrial plant. This type of oil was sourced from the K1ba source rocks in the Saiwusu uplift. Type B oil occurs in the LK1bt1 of the Tumuer Uplift and north sub-sag, and have high gammacerane abundance (the majority of gammacerane/(C〈sub〉30〈/sub〉 〉 0.3), and low Pr/Ph (ranging from 0.38 to 0.76, with mean value of 0.63). Its organic matter includes dominant terrestrial plant source, and this oil type should be sourced from the LK1bt1 source rocks in the Saiwusu uplift.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: November 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 182〈/p〉 〈p〉Author(s): Wei Liu, Wei David Liu, Jianwei Gu, Xinpu Shen〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The sedimentary rhythm of Chinese oilfields is complicated and the heterogeneity is extremely strong. Allocating water absorption of each sublayer by dividing coefficient or numeric simulation cannot accurately reflect the actual water injection of the reservoir. Calculation based on water absorption profile monitored on site is the most commonly used method in oil field. However, access to these type of data is limited due to its cost and time related to acquisition. In this study, a machine learning approach was adopted to predict water absorption in sublayer based on geologic and production parameters of injectors and producers. On the one hand, it can save test costs. On the other hand, it can continuously predict water absorption of sublayers, and make up for water injection wells with insufficient injection profiles. A handful of training observations are obtained from on-site monitoring. Interwell connectivity is first conducted to identify connected producers for injectors. Introducing interwell connectivity helps to constitute predictor variables and yield significant improvements in feature selection. Connectivities in the well group are represented by similarity between injection sequence and production sequence, which is computed by Dynamic Time Warping. Average importance of predictors are then measured based on Mean Decrease Impurity, Mean Decrease Accuracy, and Ridge regression. Some relative important features are selected to consist the final predictors. The Extreme Gradient Boosting model is developed and then trained for making predictions given any set of observations. The proposed approach is validated by using actual field case from SL oilfield, China. Results show a significant correlation between predictions and actual value from on-site monitoring.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Isty Adhitya Purwasena, Dea Indriani Astuti, Muhamad Syukron, Maghfirotul Amaniyah, Yuichi Sugai〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Microbial enhanced oil recovery (MEOR) is a proven tertiary recovery technique. Biosurfactant is a microbial bioproduct that plays an important role in MEOR applications. This study aimed to test biosurfactant stability using a design experiment based on response surface methodology. First, isolation and screening for potential biosurfactant-producing bacteria from crude oil samples was performed, followed by their characterization. A biosurfactant core flooding experiment was also conducted to examine bacterial activity on MEOR. Thirty-one sequential isolates of bacteria were screened based on qualitative and semi-qualitative parameters. One selected biosurfactant-producing bacterium was identified as 〈em〉Bacillus licheniformis〈/em〉 DS1 based on phylogenetic analysis of the 16S rRNA gene. This bacterium had the highest emulsification activity (E〈sub〉i24〈/sub〉 = 65.19%) in light crude oil and could reduce the interfacial tension between oil and water with an effective critical-micelle concentration of 157.5 mg/L. The biosurfactant was observed as a growth-associated metabolite type and the Fourier transform infrared spectrum revealed that the biosurfactant produced belonged to a group of lipopeptides. The biosurfactant has good stability in maintaining emulsification activity at pH 4–10, high temperatures up to 120 °C, and with an NaCl concentration up to 10% (w/v). Based on response surface methodology using the Box–Behnken experimental design, the optimum condition for the most stable biosurfactant is pH 12, a 40 °C temperature and 10% salinity, with an E〈sub〉i24〈/sub〉 value of 94.28%. Core flooding experiments with biosurfactant resulted in 5.4% additional oil recovery. Therefore, this biosurfactant shows a high potential application for MEOR.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Jiangfeng Cui〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The pre-Darcy flow phenomena in porous media is still not well understood, and the liquid slip mechanism in shales is controversial. Both issues need more exploration. In the field of microfluidic research, the concept of the slip length is widely employed to characterize the deviation from the no-slip flow, and it is recognized that the slip is rate-dependent. For the first time, the rate-dependent slip is proposed as an explanation for the pre-Darcy flow phenomena in porous media and the compromise between existing controversial views with regard to the liquid slip flow in shales based on careful analysis, and then such slip is incorporated in the one-dimension unsteady diffusion equation for liquids. The finite difference method is employed to numerically solve the equation, and detailed sensitivity analysis is conducted for the critical shear stress, the pore radius and the slip length. The results are summarized, and suggestions for future research are provided. This work can provide new insight into the pre-Darcy flow phenomena in the nanoporous media, and can compromise between existing controversial views regarding the liquid slip mechanism in shales. More importantly, this subject is also significant to research and develop EOR methods in shale reservoirs.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Yongfei Yang, Yingwen Li, Jun Yao, Kai Zhang, Stefan Iglauer, Linda Luquot, Zengbao Wang〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The incompatibility between workover fluid and reservoir rock is one of the causes of formation damage. Fines migration and clay swelling are considered as the major mechanisms responsible for formation damage, which results in declining productivity. However, there has been limited visualized evidence of pore structural changes during formation damage. This paper establishes a formation damage evaluation method for sandstone reservoirs based on X-ray micro-computed tomography (CT) analysis. We presented conclusive evidence for clay swelling and fines migration during workover fluid flooding and formation liquid flooding. Water sensitivity and flow rate sensitivity tests were performed on a Dongying sandstone (heterogeneous argillaceous sandstone) plug. In addition, the plug was micro-CT imaged before and after flooding with workover fluid and formation liquid at medium resolution (24 μm voxel size); the changes in core permeability and the associated changes in 2D and 3D pore space were analyzed. We found that the sandstone pore space was partially blocked by clay minerals and moving particles, leading to significantly decreased porosity (5.17%–4.19% for sample 1, 5.38%–2.76% for sample 2) and permeability (3.38 × 10〈sup〉−3〈/sup〉 μm〈sup〉2〈/sup〉 to 1.28 × 10〈sup〉−3〈/sup〉 μm〈sup〉2〈/sup〉 for sample 1, 13.30 × 10〈sup〉−3〈/sup〉 μm〈sup〉2〈/sup〉 to 3.15 × 10〈sup〉−3〈/sup〉 μm〈sup〉2〈/sup〉 for sample 2). This permeability decrease was caused by a decrease in the average pore radius and coordination number. Moreover, increased micro-CT intensity was measured by comparison of initial and final tomogram images, representing clay swelling & blockage of pores during the displacement and a generally lower porosity. This work visualized microscale formation damage, which reminds that incompatibility between workover fluid and reservoir rock damages formation seriously and the fluid injection rate should be lower than the critical flow rate when developing a reservoir with a strong water sensitivity and flow rate sensitivity.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0920410519307776-fx1.jpg" width="245" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Xin Li, Deli Gao, Baoping Lu, Yijin Zeng, Jincheng Zhang〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Maximum extension length prediction model for horizontal wells can be used to evaluate the horizontal well's extension capability and predict its maximum measured depth, which is of great significance to the production and economic benefits of horizontal wells. However, the differential sticking is not considered in previous prediction model. To overcome this shortcoming, a modified model considering differential sticking is established based on constraints of wellbore stability, differential pressure, and filtration loss simultaneously during the drilling, tripping processes and static state. Then a horizontal well is analyzed and its maximum extension length is predicted. Results show that within the conventional mud weight window, three ranges of drilling fluid density can be determined, including the first range, the second range and the reasonable range of drilling fluid density. However, only the reasonable range of drilling fluid density can satisfy all constraints of the modified prediction model, including the wellbore stability, differential pressure, and filtration loss simultaneously. Compared with the original model, the predicted well's maximum extension length decreases when the differential sticking is considered. However, it is more accurate, avoiding drilling hazards in actual drilling operation due to the excessive designed measured depth and unreasonable drilling parameters. Moreover, the maximum speeds of casing running down/pulling out are also determined and added to the modified model. Therefore, the modified model with reasonable drilling fluid density and adjusted running down/pulling out speed is the optimal modified model to predict maximum extension length and avoid differential sticking, which can also ensure that the horizontal well's designed measured depth can be successfully achieved. This study is of great significance to improve the prediction accuracy of horizontal well's maximum extension length and avoid drilling hazards, especially the differential sticking. Moreover, it also plays a guiding role in the selection of reasonable drilling fluid density during horizontal drilling.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Liang Mu, Hans Ramløv, T. Max M. Søgaard, Thomas Jørgensen, Willem A. de Jongh, Nicolas von Solms〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Antifreeze proteins (AFPs) are characterized by their ability to protect organisms from subfreezing temperatures. They constitute a class of promising candidates as environmentally kinetic hydrate inhibitors (KHIs). In this study, the effectiveness of an insect cell expressed novel monomeric streptavidin fusion protein version of 〈em〉Rhagium mordax〈/em〉 RmAFP1 antifreeze protein (mSA-RmAFP1), and four amino acids (histidine, lysine, tyrosine and proline), on CH〈sub〉4〈/sub〉 hydrate nucleation, growth and decomposition was investigated using a rocking cell apparatus, then compared with the commercial inhibitors Polyvinylpyrrolidone (PVP) and Luvicap Bio. It was found that CH〈sub〉4〈/sub〉 hydrate nucleation and growth exhibited good repeatable results under experimental conditions. The results showed that 2250 ppm mSA-RmAFP1 can inhibit CH〈sub〉4〈/sub〉 hydrate nucleation as effectively as PVP at the same concentration. The histidine, lysine, tyrosine and proline exhibited weak inhibition effect on CH〈sub〉4〈/sub〉 hydrate nucleation. The mSA-RmAFP1 decreased CH〈sub〉4〈/sub〉 hydrate growth rate and production in the fresh and memory solutions. The CH〈sub〉4〈/sub〉 hydrate formed in the solutions containing various tested KHIs present slightly lower onset decomposition temperatures than the non-inhibited system under experimental conditions. The promising performance of the insect cell expressed mSA-RmAFP1 could promote the further development of green hydrate inhibitors. The production of this protein through insect cell line fermentation provides a platform for the future production and optimization of AFPs for hydrate inhibition.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Chao Gan, Wei-Hua Cao, Min Wu, Xin Chen, Yu-Le Hu, Kang-Zhi Liu, Fa-Wen Wang, Suo-Bang Zhang〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Rate of penetration (ROP) prediction is crucial for the optimization and control in drilling process due to its vital role in maximizing the drilling efficiency. This paper proposes a novel intelligent model to predict the drilling ROP considering the process characteristics. First, the geological background and the drilling process of the case study are described. Based on the mechanism and frequency spectrum analysis, the strong nonlinearity and different low-frequency and high-frequency data noises between the data variables are detected. After that, the intelligent model is established via three stages. In the first stage, a wavelet filtering method is introduced to reduce these noises in the drilling data. In the next stage, the model inputs are determined by the mutual information method, which significantly decreased the model redundancy. In the last stage, a hybrid bat algorithm is proposed to optimize the hyper-parameters of the support vector regression model. Finally, the proposed model is validated by using the data from a drilling site in the Shennongjia area, Central China. The results demonstrate that the proposed method outperforms eight well-known methods and another three methods without different data preprocessing procedures in prediction accuracy.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Zheng Sun, Keliu Wu, Juntai Shi, Yuanhong Li, Tianying Jin, Qingyang Li, Xiangfang Li〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉A detailed study for production prediction methods under various drainage schedules for under-saturated coalbed methane wells is performed. In terms of the relationship between the value of average reservoir pressure and the critical desorption pressure, whole production life of under-saturated coalbed methane wells is divided into two periods, and the material balance equation in each period is derived respectively. Combining the two-period material balance equation and productivity equation under pseudo-steady state, a novel production prediction method is developed. Excellent agreements between predicted water/gas production rates from the proposed method and those from numerical simulator clarify the reliability successfully. Results demonstrate that (a) matrix shrinkage effect and effective permeable capability can significantly contribute to the production rise; (b) For the drainage schedule (FWFB), with the increase of the fixed water production rate, the drainage period will shorten; (c) For the drainage schedule (RDFB), sharp decrease of formation pressure will take place.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Matthew Morte, Berna Hascakir〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Candidacy of any reservoir as a microwave absorber is predicated on the complex permittivity of the sample. Modeling both the penetration and absorption dynamics of the electromagnetic wave in the reservoir is dependent on realistic estimation of this parameter. Therefore, it becomes necessary to understand the inherent intricacies of complex permittivity in the reservoir. Reservoirs are comprised of both a void space represented by the porosity parameter as well as the rock matrix and can be treated as a binary mixture of the two. Mixing rules can then be introduced and have been shown to be a viable means of estimating the dielectric response. The behavior of the bulk material is considered to be an extension of the isolated contribution of the separate parts. Therefore, by characterizing the response of the individual components of the mixture, the overall response can be estimated. Utilization of mixing rules enables efficient estimation of the dielectric properties anywhere in the reservoir as a function of the rock matrix, fluid saturation, and porosity. The absorptive capacity of the reservoir can then be described which is used to screen the efficacy of the material for microwave introduction. Both the real and imaginary components of complex permittivity are measured on nine consolidated core samples of varying lithology and fluid saturation over the frequency range of 400 MHz to 6 GHz. Experimental data is compared to various mixing rules commonly implemented to determine validity and viability of the estimation of complex permittivity for consolidated samples.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Qingsong Cheng, Min Zhang, Hongbo Li〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Test analyses such as pyrolysis, soluble organic matter extraction, group component separation and GC-MS were conducted to 22 source rock samples and 28 crude oil samples from deep lacustrine facies of Funing Formation in Subei Basin. Source rocks stayed at the low maturity-mature stage (Ro:0.58%–0.71%), while crude oil stayed at the mature stage (Rc:0.71%–0.88%). The Pr/Ph values of samples in the research area ranged between 0.16 and 0.62. These samples could be classified as Sterane/Hopane〉1 and Sterane/Hopane〈1. For all the samples, the C〈sub〉29〈/sub〉 Steranes content was high; had inverse “L” distribution in ααα20RC〈sub〉27〈/sub〉-ααα20RC〈sub〉28〈/sub〉-ααα20RC〈sub〉29〈/sub〉 regular sterane; αα20R-Sterane played a dominant role; abundances of ββ- and 20S-Sterane were low. As for samples of Sterane/Hopane〉1, G/C〈sub〉30〈/sub〉H ranged between 0.63 and 2.56, and the Sterane isomerization was very low. As for samples with Sterane/Hopane〈1, G/C〈sub〉30〈/sub〉H ranged between 0.04 and 0.46 and the Sterane isomerization was higher than the former. Abnormal distribution of Sterane isomerization was rarely influenced by thermal dynamic effects and sources, but was mainly influenced by the sedimentary environment. A lot of references reported Sterane isomerization with abnormally high abundance under the high-salinity environment. However, the finding obtained by the research that the higher water salinity corresponded to the lower degree of Sterane isomerization was discovered for the first time. The C〈sub〉29〈/sub〉 Sterane abundance was high and the C〈sub〉29〈/sub〉/C〈sub〉27〈/sub〉 regular sterane ratio was constant and would not vary with changes of environmental parameters and biological source parameters. Sterane content was not correlated with tricyclic terpene of algae sources, but was positively correlated with ETR of the aquatic organism source, while it had very good positive correlation with Gammacerane. In addition, samples with the high Sterane content had high abundance in Carotene, C〈sub〉24〈/sub〉+alkyl-cyclohexane and C〈sub〉21〈/sub〉+isoprenoid alkanes. Through profound analysis and reference survey, it is found that the abnormally high abundance of C〈sub〉29〈/sub〉 Sterane of samples in the research area may be correlated with halophilic protozoon in salinized deepwater lakes.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Ahmed Farid Ibrahim, Hisham A. Nasr-El-Din〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉 〈p〉After hydraulically fracturing of shale gas wells, theoretical and experimental studies showed that over 75% of the injected water-based fracture fluids left unrecovered. The trapped water causes permeability damage and productivity impairment. The flowback water also tends to be highly saline, often with TDS contents of as much as 200,000 ppm. This study aims to investigate the effect of well shut-in before flowback stage (the soaking process) on the production of shale and tight sandstone formations.〈/p〉 〈p〉Shale and sandstone samples were analyzed by X-ray diffraction (XRD). Marcellus shale and Kentucky sandstone cores were used. A modified core flood setup was used to allow porosity measurements by gas expansion method, then pulse decay permeability measurements, and fluid injection during the leak-off process. Nitrogen was used for gas expansion and permeability measurements, while 5 wt% KCl brine was used as representative of the leak-off fracturing fluid. The fracturing fluid was injected under a constant pressure gradient (300 in the case of sandstone cores and 1500 psi in the case of shale cores. After removing the pressure gradient, gas permeability was measured at different soaking times. Computed tomography (CT) was used to scan the cores during the experiment to observe the propagation of fracturing fluid in the core with time.〈/p〉 〈p〉The results show that the regained permeability for sandstone formation was 60% of its initial value directly after the leak-off stage. Then, the regained permeability decreased with increasing the soaking time 38% of its initial value after the core completely invaded with leak-off fluid. The propagation rate of water saturation front from CT-scan data decreased with time until reaching the core outlet. The regained permeability on shale cores was 15% of its initial value and decreased with soaking time, due to depressed relative permeability curve on this tight pore-space cores.〈/p〉 〈p〉This study addresses the mechanism of production enhancement or reduction as a result of the soaking process for shale and tight sandstone formations.〈/p〉 〈/div〉 〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Arash Azamifard, Fariborz Rashidi, Mohammad Ahmadi, Mohammadreza Pourfard, Bahram Dabir〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉 〈p〉Different sources of data are used to construct a reliable model of reservoir for oil/gas production. This model ought to be matched with the production history of reservoir and also show reliable predictions for future performance. To this end, permeability modeling (characterization of heterogeneity) is crucially important which is proved to be done by Multiple Point Statistics (MPS) recently. Furthermore, deep learning methods are massively used as a promising tool for regression applications. In this study, one MPS method is employed for generating the reservoir realizations. Realizations, alongside their simulation outputs, are utilized for training a convolutional deep network. In this manner, MPS is joined with deep learning to find the most appropriate realization(s) of the reservoir based on the fluid flow simulation. Moreover, unseen MPS realizations as well as another MPS realizations are used to verify the selection ability of trained network. The detailed architecture of convolutional network is illustrated in this study.〈/p〉 〈p〉The purpose of training this network and combination with MPS is to generate the matched realization(s) in history period that also show acceptable reservoir behavior in the future times of reservoir simulation. After training, the actual production data of selected realizations are obtained by simulation the reservoir for history and also future times. The results show that selected realizations efficiently capture the trend of reference behavior. Although these realizations lack identical permeability values, they have same texture of permeability (permeability heterogeneity). Meanwhile, they show acceptable match in reservoir simulation outputs. By proposed workflow, the uncertainty of permeability modeling is considered more exhaustively. It is done by selecting the realizations from enormous possible realizations dataset and providing a deep learning tool which is capable for screening quite large number of realizations. Interesting finding is satisfactory behavior of realization(s) in both history and future periods of reservoir performance.〈/p〉 〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0920410519305467-fx1.jpg" width="351" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 181〈/p〉 〈p〉Author(s): Chean Xing Liew, Raoof Gholami, Mehdi Safari, Arshad Raza, Minou Rabiei, Nikoo Fakhari, Vamegh Rasouli, Jose Varghese Vettaparambil〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Certain polymers are often used during water based mud (WBM) drilling to reduce the filtration loss in permeable intervals. Although they often provide a good performance but cannot totally stop the fluid loss and mud invasion into the reservoir may cause significant formation damage including unfavourable changes of surface wettability. As a result, the two phase relative permeability of the near wellbore region changes and production may face difficulties in the later stages. In this paper, a new mud design is proposed to reduce the surface wettability alteration posed by WBM in sandstone reservoirs. The results obtained from performing a series of contact angle measurements indicated that clean and dirty sandstones are strongly water wet systems but mud invasion can make them a weakly water wet surface. It was also found that Cetyltrimethylammonium bromide (CTAB), as a cationic surfactant, prevents surface alteration of rocks and reduce the formation damage, but it may isolate the clay and creates a huge mud cake around the borehole. It was also observed that the salinity of the mud has a great impact on the surface wettability and adding CaCl〈sub〉2〈/sub〉 can reduce the formation damage in the reservoir intervals during drilling, although caution must be taken to maintain the cost of the mud.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0920410519306333-fx1.jpg" width="134" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Ning Li, Yushi Zou, Shicheng Zhang, Xinfang Ma, Xingwang Zhu, Sihai Li, Tong Cao〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Evaluating the brittleness of rock is significant for strategy determination of hydraulic fracturing, such as candidate selection and parameter optimization. A series of definitions and indices of brittleness have been proposed to characterize the mechanical behavior rock failure. However, these existing indices failed to consider the residual state and the confinement effect. Based on the analysis of energy evolution during the whole process of rock failure, the brittleness was redefined in this study as the comprehensive capability of dissipating little energy during the pre-peak stage and self-sustaining complete failure during the post-peak stage. Accordingly, a new energy-based brittleness index 〈em〉B〈/em〉 was proposed in terms of the complete stress-strain curve to quantify this capability from following three aspects: the ratio of accumulated elastic strain energy and total absorbed energy during the pre-peak stage (〈em〉B〈/em〉〈sub〉1〈/sub〉); the proportion of elastic strain energy in all energy source consumed for sustaining rock failure (〈em〉B〈/em〉〈sub〉2〈/sub〉); and the dissipation extent of accumulated elastic strain energy during the post-peak stage (〈em〉B〈/em〉〈sub〉3〈/sub〉). To verify the reliability of the new method, uniaxial and triaxial compression tests were performed on different types of rock samples. The application and comparison of various indices showed that the new brittleness index precisely characterized the stress-strain curves and failure behavior of rock samples under different confinement levels. The variation trends of brittleness with confining pressure were obviously distinct among different rock types. Three independent brittleness indices 〈em〉B〈/em〉〈sub〉1〈/sub〉, 〈em〉B〈/em〉〈sub〉2〈/sub〉, and 〈em〉B〈/em〉〈sub〉3〈/sub〉 were helpful for analyzing sensitivity difference of brittleness to confining pressure among different rock types. Accordingly, this new energy-based method can provide reliable evaluation of rock brittleness.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Xin Sun, Zhibin Gao, Mingwei Zhao, Mingwei Gao, Mingyong Du, Caili Dai〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Based on the situation of the freshwater shortage during the large scale hydraulic fracturing on offshore-platform, a novel seawater-based viscoelastic fracturing fluid system was developed. The system was composed with a commercial anionic – nonionic viscoelastic surfactant named Fatty Methyl Ester Sulfonates (FMES) with the concentration of 60 mmol/L, the South China Sea simulated seawater with the TDS of 32500 mg/L and Na〈sup〉+〈/sup〉 with the concentration of 1320 mmol/L. On the basis of this fracturing fluid system, a series of performances have been evaluated through extensive experiments. Analysis of laboratory tests indicated that the new fluid has good viscosity stability, low fluid loss and high proppant suspending ability under 75 °C. This fluid always appeared as a pseudoplastic fluid at various shearing speeds. After high speed shearing, the viscosity recovered quickly which means the fluid has remarkable self-repairability. This fluid breaks rapidly once oil injected. The observed permeability return rate achieved through core flooding experiment was over 70%, which indicated low formation damage after fracturing. Furthermore, the vermicular micelle and microstructure of fluid system has been discovered through Cryogenic Transmission Electron Microscope (cryo-TEM), which well explained the mechanism of excellent performances of fluid system.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Iman Nowrouzi, Abbas Khaksar Manshad, Amir H. Mohammadi〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Using smart nano-fluids with respect to enhanced oil recovery (EOR) is an emerging technology, which is normally studied in combination with other methods. Nano-fluid performance depends on type, size and concentration of the dispersed nano-particles in it. In the current work, effects of size and concentration of seawater-based nano-fluid of TiO〈sub〉2〈/sub〉 in different salinities (resulted from dilution) on enhanced oil recovery parameters including contact angle, wettability and interfacial tension (IFT) have been investigated using the pendant drop method. Eventually, effect of TiO〈sub〉2〈/sub〉 nano-particles in nano-fluids on recovered quantity has been investigated using imbibition experiment mechanism, which is one of the most important mechanisms in oil production from fractured reservoirs. Results of the experiments show that using higher concentration and smaller particle sizes of TiO〈sub〉2〈/sub〉 would decrease the IFT and contact angle. Higher concentration and larger particle sizes of TiO〈sub〉2〈/sub〉 in nano-fluid would increase the viscosity. Imbibition experiments show that the nanofluids containing smaller TiO〈sub〉2〈/sub〉 nanoparticles are more efficient.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0920410519307788-fx1.jpg" width="273" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Gene Mask, Xingru Wu, Kegang Ling〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The determination of flow patterns is a fundamental problem in two-phase flow analysis, and an accurate model for gas-liquid flow pattern prediction is critical for any multiphase flow characterization as the model is used in many applications in petroleum engineering. We developed a new model based on machine learning techniques via dimensionally analyzing more than 8000 laboratory multi-phase flow tests. As shown in the test results, the flow pattern is affected by fluid properties, in-situ flow rates of liquid and gas, flow conduit geometry and mechanical properties. Applying hydraulic fundamentals and dimensional analysis, three upscaling numbers are developed to reduce the number of freedom dimensions. These dimensionless variables are easy to use for upscaling and have physical meanings. Machine learning techniques on the dimensionless variables significantly improved their predictive accuracy. Until now the best matching on these laboratory data was approximately 80% using the most recently developed semi-analytical models. The quality of the matching is improved to 90% or greater on the experimental data using machine learning techniques.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 21 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Yunfen Huang, Yuying Li, Yingying Qu, Yue Zheng, Mengting Ouyang, Yunqing Zhang, Wei Lai, Qingfang Xu〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Autophagy has been associated with a variety of diseases especially aging. Human dermal fibroblasts (HDFs) can internalize and then degrade elastin, collagen and advanced glycation end products (AGEs) in lysosomes, which plays prominent roles in extracellular matrix homeostasis and AGEs removal in the dermis. Although autophagy has been reported to be decreased in photoaged fibroblasts, the underlying mechanism and its relevance to photoaging remain elusive. Here, we showed that GFP-LC3 puncta per cell, LC3Ⅰ/Ⅱ conversion and p62 expression were significantly increased, whereas beclin1 expression was not altered in UVA-induced photoaged fibroblasts compared with non-photoaged control. Moreover, autophagic flux was not significantly affected by chloroquine treatment, but was remarkably induced by rapamycin treatment in photoaged fibroblasts, suggesting that UVA-induced photoaging might inhibit autophagy at the degradation stage. Further lysosomal function studies demonstrated that degradation of formed autophagosomes, LC3Ⅱprotein and DQ-Green BSA was all dramatically decreased in photoaged fibroblasts. LysoSensor yellow/blue DND 160 staining and flow cytometry assays demonstrated that photoaging obviously attenuated lysosomal acidification. Also, decreased expression of cathepsin B, L and D was found in photoaged fibroblasts. These data suggest that lowered lysosomal acidity and decreased cathepsins expression might contribute to the inhibition of autophagic degradation, which might be crucial in the development of photoaging through impairing intracellular degradation.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 21 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Xuanzhong Wang, Shan Lu, Chuan He, Chongcheng Wang, Lei Wang, Meihua Piao, Guangfan Chi, Yinan Luo, Pengfei Ge〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉RSL3 is a type of small molecular compound which can inactivate glutathione peroxidase 4 (GPX4) and induce ferroptosis, but its role in glioma cell death remains unclear. In this study, we found RSL3 inhibited the viabilities of glioma cells and induced glioma cell death in a dose-dependent manner. In vitro studies revealed that RSL3-induced cell death was accompanied with the changes of autophagy-associated protein levels and was alleviated by pretreatment of 3-Methyladenine, bafilomycin A1 and knockdown of ATG5 with siRNA. The ATP and pyruvate content as well as the protein levels of HKII, PFKP, PKM2 were decreased in cells treated by RSL3, indicating that RSL3 induced glycolysis dysfunction in glioma cells. Moreover, supplement of exterior sodium pyruvate, which was a final product of glycolysis, not only inhibited the changes of autophagy-associated protein levels caused by RSL3, but also prevented RSL3-induced cell death. In vivo data suggested that the inhibitory effect of RSL3 on the growth of glioma cells was associated with glycolysis dysfunction and autophagy activation. Taken together, RSL3 induced autophagic cell death in glioma cells via causing glycolysis dysfunction.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 22 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Ning Luo, Dan-dan Chen, Li Liu, Li Li, Zhong-ping Cheng〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The CXCL12/CXCR4 axis is strongly implicated as key determinant of tumor invasion and metastasis in ovarian cancer. However, little is known about the potential downstream signals of the CXCL12/CXCR4 axis that contribute to ovarian cancer cell invasion and metastasis. ARHGAP10, a member of Rho GTPase activating proteins is a potential tumor suppressor gene in ovarian cancer. In this study, a negative correlation between the protein levels of CXCL12, CXCR4, vascular endothelial growth factor (VEGF), vascular endothelial growth factor receptor-2 (VEGFR2) and ARHGAP10 was uncovered in ovarian cancer tissues and paired adjacent noncancerous tissues. CXCL12 stimulation reduced the expression of ARHGAP10. Furthermore, the pretreatment of CXCR4 inhibitor (AMD3100) or the vascular endothelial growth factor receptor-2 (VEGFR2) inhibitor (SU1498) abrogated the CXCL12-deduced expression of ARHGAP10. Finally, an 〈em〉in vitro〈/em〉 functional assay revealed that CXCL12 did not stimulate ovarian cancer cell invasion when ARHGAP10 was overexpressed or when ovarian cancer cells were pre-treated with AMD3100 or SU1498. Knockdown of ARHGAP10 significantly suppressed the inhibitory effects of SU1498 on ovarian cancer cell invasion and lung metastasis. In summary, these findings suggest that CXCL12/CXCR4 promotes ovarian cancer cell invasion by suppressing ARHGAP10 expression, which is mediated by VEGF/VEGFR2 signaling.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 21 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Yojiro Ishida, Keiko Inouye, Ouyang Ming, Masayori Inouye〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉MazF is a sequence-specific endoribonuclease or mRNA interferase, which cleaves RNA at a specific sequence. Since the expression of a specific gene or a group of specific genes can be regulated by MazF, expanding the repertoire of recognition sequences by MazF mRNA interferases is highly desirable for biotechnological and medical applications. Here, we identified a gene for a MazF homologue (MazFme) from 〈em〉Methanohalobium evestigatum〈/em〉, an extremely halophilic archaeon. In order to suppress the toxicity of MazFme to the 〈em〉E. coli〈/em〉 cells, the C-terminal half of the cognate antitoxin MazEme was fused to the N-terminal end of MazFme. Since the fusion of the C-terminal half of MazEme to MazFme was able to neutralize MazFme toxicity, the MazEme-MazFme fusion protein was expressed in a large amount without any toxic effects. After purification of the MazEme, the free MazFme RNA cleavage specificity was determined by primer extension and synthetic ribonucleotides, revealing that MazFme is a CUGGU/UUGGU-specific endoribonuclease.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 21 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Takujiro Homma, Sho Kobayashi, Junichi Fujii〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Singlet oxygen causes a cytotoxic process in tumor cells in photodynamic therapy (PDT) and skin photoaging. The mechanism responsible for this cytotoxicity is, however, not fully understood. 1-Methylnaphthalene-4-propionate endoperoxide (MNPE) is a cell-permeable endoperoxide that generates pure singlet oxygen. We previously reported that cell death induced by MNPE did not show the typical profile of apoptosis, and the cause of this cell death remains elusive. We report herein on an investigation of the mechanism for MNPE-induced cell death from the view point of ferroptosis. The findings indicate that the MNPE treatment decreased the viabilities of mouse hepatoma Hepa 1-6 cells in vitro, and that this decrease was accompanied by increases in the concentrations of both intracellular ferrous iron and the level of lipid peroxidation, but that the caspase-mediated apoptotic pathway was not activated. The intracellular levels of cysteine and glutathione were not affected by the MNPE treatment. Importantly, an assay of lactate dehydrogenase activity revealed that the cell death caused by MNPE was suppressed by ferrostatin-1, a ferroptosis-specific inhibitor. Collectively, these results strongly indicate that ferroptosis is the main cell death pathway induced by singlet oxygen.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 21 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Tian Wang, Xi-Ya Sun, Ai-Ling Li, Ming-Xing Zhou, Yang Han, Jiao-Zhen Zhang, Dong-Mei Ren, Hong-Xiang Lou, Xiao-Ning Wang, Tao Shen〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Oxidative stress is one of the main pathogenesis for many human diseases. Nuclear factor erythroid 2-related factor 2 (Nrf2)/antioxidant response element (ARE) signaling pathway plays a key role in regulating intracellular antioxidant responses, and thus activation of Nrf2/ARE signaling pathway is a potential chemopreventive or therapeutic strategy to treat diseases caused by oxidative damage. In the present study, we have found that treatment of Beas-2B cells with botrysphins D (BD) attenuated sodium arsenite [As (III)]-induced cell death and apoptosis. Meanwhile, BD was able to upregulate protein levels of Nrf2 and its downstream genes NQO1 and γ-GCS through inducing Nrf2 nuclear translocation, enhancing protein stability, and inhibiting ubiquitination. It was also found that BD-induced activation of the Nrf2/ARE pathway was regulated by PI3K, MEK1/2, PKC, and PERK kinases. Collectively, BD is a novel activator of Nrf2/ARE pathway, and is verified to be a potential preventive agent against oxidative stress-induced damage in human lung tissues.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X19315918-fx1.jpg" width="496" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: Available online 21 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): ChuanLing Tang, JiaPing Pan, Hui Li, Bin He, Ling Hong, XiaoMing Teng, DaJin Li〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Oxidative stress is associated with functional disorder of trophoblast cells. Our previous studies have demonstrated that cyclosporin A (CsA) promotes the activity of normal human trophoblast cells. We further investigated the role and mechanism of CsA on oxidative stress in trophoblast cells. JEG-3 cells were co-cultured with H〈sub〉2〈/sub〉O〈sub〉2〈/sub〉 and CsA. Cell viability and morphology were measured by MTT assay and inverted microscope. Reactive oxygen species (ROS) was analyzed by fluorescence microscopy. Cell mitochondrial membrane potential (MMP) was determined by flow cytometric analysis. Malondialdehyde (MDA) production, superoxide dismutase (SOD) and catalase (CAT) activities were examined using colorimetric assays. The expression and phosphorylation of FAK and Src kinase proteins were examined by western blotting. CsA increased JEG-3 cell viability and reduced the morphologic injury induced by H〈sub〉2〈/sub〉O〈sub〉2〈/sub〉 treatment. CsA decreased ROS and MDA production, increased SOD and CAT activities, and restored the MMP of H〈sub〉2〈/sub〉O〈sub〉2〈/sub〉 treated JEG-3 cells. CsA administration suppressed H〈sub〉2〈/sub〉O〈sub〉2〈/sub〉-induced reduction of FAK and Src phosphorylation. Blocking the activation of FAK or Src attenuated the protective effect of CsA on JEG-3 cells in H〈sub〉2〈/sub〉O〈sub〉2〈/sub〉-induced oxidative injury. CsA protects JEG-3 cells from H〈sub〉2〈/sub〉O〈sub〉2〈/sub〉-induced oxidative injury, and the FAK/Src signaling pathway plays an important role in this process.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 21 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Yu Zhao, Gautam Mahajan, Chandrasekhar R. Kothapalli, Xue-Long Sun〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Cell surface receptors are the key contributors of macrophage function. Most macrophage cell surface receptors are glycoproteins with sialic acids at the terminal of their glycans. It is well recognized that lipopolysaccharide (LPS) induces cell surface sialylation changes that may in turn contribute to macrophage functions. In addition, cellular mechanics such as elasticity is also a major determinant of macrophage function, which in turn is modulated by LPS. In this report, we characterized the sialylation status of macrophages upon LPS stimulation and assessed the changes in its mechanical properties and function. Specifically, we confirmed that sialylation status is closely related to macrophage biomechanical characteristics (elastic modulus, tether force, tether radius, adhesion force, and membrane tension) and thus directly involved in macrophage function. Further, we modulated macrophage sialylation status by feeding the cell with exogenous free sialic acid (Neu5Ac, Neu5Gc) and sialidase inhibitors, and examined the resulting effects on cellular mechanics and function. A systematic recognition of sialylation status related to cellular mechanics of macrophages will contribute to defining their phenotypes and elucidate macrophage functional diversity.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X19316122-fx1.jpg" width="258" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Richard O. Afolabi, Esther O. Yusuf, Chude V. Okonji, Shalom C. Nwobodo〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Modelling the flow of nanoparticle modified drilling mud (or nano-drilling muds) requires the use of existing generic time-independent models with the addition of nanoparticle terms having a number of parameters incorporated. These parameters quantify the uncertainties surrounding nanoparticle contributions to drilling mud rheology. However, when the parameters in the overall model become too large, the tuning of each parameter for proper flow description can be challenging and time-consuming. In addition, the predictive capability of known models for the different regimes associated with the flow of nano-drilling muds is limited in scope and application. For example, computational analysis involving nano-drilling muds have been described using Herschel-Buckley, Power-Law, Bingham Plastic, Robertson-Stiff, Casson, Sisko, and Prandtl-Eyring. However, these models have been shown over time to have limited predictive capability in accurately describing the flow behavior over the full spectrum of shear rates. Recently, a new rheological model, the Vipulanandan model, has gained attraction due to its extensive predictive capability compared to known generic time-independent models. In this work, a rheological and computational analysis of the Vipulanandan model was carried out with specific emphasis on its modification to account for the effects of nanoparticles on drilling muds. The outcome of this novel approach is that the Vipulanandan model can be modified to account for the effect of interaction between nanoparticles and clay particles. The modified Vipulanandan show better prediction for a 6.3 wt% mud with 〈math xmlns:mml="http://www.w3.org/1998/Math/MathML" altimg="si1.svg"〉〈mrow〉〈msup〉〈mrow〉〈mtext〉R〈/mtext〉〈/mrow〉〈mrow〉〈mn〉2〈/mn〉〈/mrow〉〈/msup〉〈/mrow〉〈/math〉 of 0.999 compared to 0.962 for Power law and 0.991 for Bingham. However, the R〈sup〉2〈/sup〉 value was the same with Herschel Buckley model but the RMSE value show better prediction for the Vipulanandan model with a value of 0.377 Pa compared to the 0.433 Pa for Herschel Buckley model.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Yizhong Zhang, Maolin Zhang, Haiyan Mei, Fanhua Zeng〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉For the tight gas reservoir with high salinity formation water, the flow of formation brine may cause salt precipitation and thus promote scale formation. Salt deposition and the accompanying scale formation as well as swelling and shrinkage of clay minerals may cause blockage of the pore and throats, which will significantly reduce permeability and the subsequent gas production rate. In this study, the influence of salt precipitation/dissolution on the physical properties of a tight gas reservoir is studied. Core analyses, core flooding tests, core evaporation tests, and microscopic visual flooding inspections are carried out on core samples extracted from the Shahejie Formation. To simulate the depletion production process in the subsurface, brine flow characteristics are studied by core flooding tests with pressure reduction at a formation temperature of 115 °C and with the change of pressure ranging from 30 to 1 MPa. The potential changes in physical properties including permeability, porosity, pore radius, pore size distribution, and surface area are analyzed by core evaporation tests. To show the brine flow and geometry of salt deposits in the pore structure, visual brine flooding is observed under high magnification microscope. Photos of the pore structure at different stages of salt precipitation are recorded. The results reveal that salt dissolution/precipitation has a significant impact on flow-through characteristics, and it can be divided into three stages during the depletion process. The damage of salt to the core permeability could reach more than 90%, and it increases gradually with the reduction of porosity and initial permeability and the increase of specific area. The maximum formation damage caused by salt precipitation is realized when the salt crystal size and pore throat diameter are close in size. The semi-empirical Carman-Kozeny equation together with porosity and grain diameter is used to estimate the permeability after precipitation.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Mohammad Reza Mahdiani, Ehsan Khamehchi, Amir Abolfazl Suratgar〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉In the gas lift, gas injection rate has an optimum value and increasing or decreasing its amount decreases the oil production rate. This optimum point changes in production time and creates an optimum trajectory. There has previously been much research in this area, but none have used a powerful tool in a dynamic model to find a good optimal path for maximizing the production or NPV in a gas-lifted field. In addition, gas allocation in a time step changes the production of different wells and the pattern of fluid flow and also reservoir pressure decline in the reservoir. This can affect the optimum gas allocation of the next time step, but this has not been analyzed in any of the previous works. In this paper, first, a model of reservoir and well of a gas lift well is developed and using some experimental data points the best-fitted correlations are selected. Then, two common and famous heuristic algorithms (genetic algorithm, simulated annealing), and two recently introduced optimization algorithms (Moth Swarm Algorithm and Grasshopper Optimization Algorithm) are used to find the optimal path of the injection lift gas rates of the wells. Finally, the results of these four algorithms are compared with each other and some other allocation scenarios. In addition, different aspects of the injection and production rates of the different wells and their cumulative rates and NPV paths are analyzed. The results illustrated that using MSA has an optimum point with higher production. In addition, MSA finds a specific control path with a need for lower lift gas and also a smaller compressor. It also has a really different control path with other optimization algorithm paths. In addition, in this paper, a new long term instability in flow is observed, which was explained by the drainage area of each well. This control path of each well was discussed and it was concluded that GA can find the most stable path.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 8 October 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications, Volume 518, Issue 1〈/p〉 〈p〉Author(s): You-Jian Zhang, Jian-Rong Song, Ming-Jun Zhao〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Stroke is reported as a leading cause of mortality and disability in the world. Neuroinflammation is significantly induced responding to ischemic stroke, and this process is accompanied with microglial activation. However, the pathogenesis contributing to ischemic stroke remains unclear. NR4A1 (Nur77) is a nuclear receptor that is expressed in macrophages, playing a significant role in regulating inflammatory response. In the present study, we attempted to explore the effects of NR4A1 on ischemic stroke using 〈em〉in vivo〈/em〉 and 〈em〉in vitro〈/em〉 studies. Results suggested that NR4A1 expression in microglia was markedly increased after cerebral ischemic damage. Then, we found that NR4A1 knockout attenuated ischemia-triggered infarction volume and neuron injury. Also, cognitive impairments were improved in ischemic mice with NR4A1 deficiency, resulting in functional improvements. Moreover, M1 polarization in microglia and neutrophil recruitment was significantly alleviated by NR4A1 deletion, as evidenced by the reduced expression of M1 markers, chemokines, as well as intracellular adhesion molecule-1 (ICAM-1) and myeloperoxidase (MPO) levels. Importantly, we found that NR4A1 could interact with nuclear factor-κB (NF-κB)/p65 based on 〈em〉in vivo〈/em〉 and 〈em〉in vitro〈/em〉 results. Suppressing p65 activation by the use of its inhibitor clearly reduced the NR4A1 expression, M1 polarization and neutrophil recruitments, while rescued the expression of anti-inflammatory factors in microglia treated with oxygen-glucose deprivation (OGD). Therefore, NR4A1 suppression in microglia restrained neuroinflammation through interacting with NF-κB/p65 to attenuate ischemic stroke.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 21 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Deepika Sharma, Monika Choudhary, Jitendraa Vashistt, Rahul Shrivastava, Gopal Singh Bisht〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉〈em〉Acinetobacter baumannii〈/em〉 is one of the clinically important nosocomial pathogen that has become resistant to most of the conventional antimicrobials. Biofilms formed by 〈em〉A. baumannii〈/em〉 are difficult to eradicate, thereby highlighting the need for new therapeutic options to treat biofilm associated infections. Antimicrobial peptides have recently emerged as new alternatives to conventional antibiotics, but peptides often suffer with drawbacks such as poor proteolytic stability and high cost of production. To tackle these limitations, mimetics based on antimicrobial peptides are usually designed and synthesized. In this study we have designed and synthesized a peptoid based on a minimum amphipathic template of a twelve residue cationic peptide. Antimicrobial evaluation of peptide and peptoid was carried out against biofilm producing 〈em〉A. baumannii〈/em〉 strains〈em〉.〈/em〉 Further, proteolytic stability study of these compounds was carried out in human serum and morphological alterations caused by them on 〈em〉A. baumannii〈/em〉 were visualized by SEM analysis. In addition, these compounds were found to be non toxic to human erythrocytes at their minimum inhibitory concentrations against 〈em〉A. baumannii〈/em〉 strains. Overall results obtained in this study suggest that these compounds might be potential antimicrobial agents against biofilm forming 〈em〉A. baumannii〈/em〉 and it may be postulated that their mode of action on 〈em〉A. baumannii〈/em〉 is disruption of bacterial cell membrane.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 20 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Shahper N. Khan, Shakir Khan, Lama Misba, Muzammil Sharief, Amiruddin Hashmi, Asad U. Khan〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉〈em〉Candida albicans〈/em〉 frequently causes variety of superficial and invasive disseminated infections in HIV infected patients. Further, the emergence of non albicans species causing candidiasis predominantly in patients with advanced immune-suppression and drug resistance brings great apprehension. Hence, in this study we evaluate the capability of eugenol (EUG), a natural compound in combination with less toxic concentrations of amphotericin B (AmpB) for enhanced antifungal effects and reduced toxicity. Antifungal activity and time-kill assay were employed according to Clinical Laboratory Standard Institute (CLSI) guidelines with minor modifications on clinical isolates of 〈em〉Candida albicans〈/em〉. To confirm the synergistic interaction of EUG and AmpB, checkerboard experiments were employed. Interestingly, EUG-Amp B combination shows many fold higher anti-candida activity compared to single component treatment. Furthermore, our results depicts reactive oxygen species (ROS) driven killing and mitochondrial hyperpolarisation on treatment. Our data also suggests inhibition of calcium channel by EUG and predicts longer retainment of AmpB. Pronounced cellular damage was observed with combination treatment than to EUG and AmpB alone. Our finding is helpful for the removal of toxic concentrations of antifungal agents.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: November 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 182〈/p〉 〈p〉Author(s): Shaobin Guo, Wenjing Mao〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉This research analyzed the pore evolution and diagenesis in a Permian Shanxi shale from the Ordos Basin. Thermal simulation method simulated the thermal evolution of organic matter in a sample from mature (R〈sub〉o〈/sub〉 = 0.96%) to overmature (R〈sub〉o〈/sub〉 = 3.05%). Gas adsorption and mercury intrusion capillary pressure techniques were used to analyze pore-size distribution across a maturation gradient. X-ray diffraction, Focused Ion Beam-Scanning Electron Microscopy and rock pyrolysis techniques were used to divide the stages of diagenesis and pore evolution. Results showed that mesopores and macropores dominate pore volume while micropores and mesopores dominate surface area. Pore volume and surface area initially decreased and then increased with maturity. Kaolinite is converted to illite and illite-smectite mixedlayer in the middle to late diagenesis stage. Pore evolution and diagenesis can be divided into four stages in a sample from mature to overmature. Factors influencing pore-size distribution are different in four stages.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Feng Tian, Xiaodong Wang, Wenli Xu〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Most gas reservoirs are not homogeneous in practice. Due to the influences of the nonlinearity and heterogeneity, little work has focused on the behavior of multiple-fractured horizontal wells (MFHWs) in heterogeneous gas reservoirs. In this study, a semi-analytical model based on a detailed analytical method for MFHWs in heterogeneous gas reservoirs is established. The source functions, boundary element method and Green's solution are used to build the model in Laplace space. To solve the problem that the combination of the pseudo-function approach with the material balance equation describing homogeneous gas reservoirs cannot be effectively linearize the nonlinearity in heterogeneous gas reservoirs, a multi-region material balance equation for heterogeneous gas reservoirs is derived. Then, the performance of an MFHW in a two-block gas reservoir is calculated. The pressure behavior and the flux distribution are influenced by the crossflow coefficient, fracture conductivity, size of the gas reservoir, fracture half-length and storage ratio. A high crossflow coefficient increases the flux of the interface and the difference in flux between fractures in different blocks. The effects of the crossflow can be weakened by a high fracture conductivity and large fracture half-length. This study provides a theoretical basis for MFHWs in heterogeneous gas reservoirs.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Jinming Zhang, Xiaosen Li, Zhaoyang Chen, Qingping Li, Gang Li, Tao Lv〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Gas production from low-permeability hydrate reservoirs is characterized by very low efficiency. In this work, the enlarged well wall with good permeability was first proposed to improve the gas production performance from low-permeability hydrate reservoir in Liwan 3 area of the South China Sea. The gas-water production behaviors, the spatial distributions and evolutions of hydrate reservoir parameters and gas-water flow characteristics, induced by constant-depressurization, were investigated and evaluated by numerical simulations under different radius of permeable well wall. Results show that the enlarged well wall provides a high-permeability channel around the production interval and increases the contact area between the production interval and hydrate layer, so the pressure drop propagation speed and distance, i.e. the depressurization efficiency in the hydrate-bearing sediments is increased. Both gas and water production performances are significantly improved, and the gas and water production rates, cumulates and gas to water ratio increase with the increase in permeable well wall radius. The cumulative CH〈sub〉4〈/sub〉 and water produced increase by 〈em〉ca.〈/em〉 4 and 3 times, respectively, when the permeable well wall radius increases from 0 to 5 m. However, the heat supply by heat convection of geothermal water is still limited.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Herson Oliveira da Rocha, Jéssica Lia Santos da Costa, Antonio Abel Gonzaléz Carrasquilla, Alfredo Moisés Vallejos Carrasco〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉One of the most significant problems in the characterization and recovery of Aptian carbonate reservoirs, especially the Brazilian pre-salt, has been the lack of precise estimates of permeability. The heterogeneity of the permeability of the carbonate reservoirs occurs owed great different of the pore form occurred mainly by diagenetic processes. In this study, propose a joint and integrated methodology to estimate the permeability in the reservoir. To achieve this goal, porosity-permeability core data, image logs, applying the Rock Types concepts, analysis of the results of well log Nuclear Magnetic Resonance (NMR), modeling the well logs resistivity (laterolog and induction), as well as estimating the specific surface of the rock using images of section 2D from the pugs, to quantitatively estimate the permeability of the reservoir based on the petrophysical properties of the rocks. In the study it was possible to identify different pore systems distributed in eight Hydraulic Flow Units (HFU) determined from the pore groove radii. The Nuclear Magnetic Resonance (NMR) log it served to separate area of the spectrum corresponding to the small pores from the area corresponding to the large pores. The resistivity logs were analyzed with the purpose of estimating the direction (vertical, horizontal and dipping) and thickness of the fractures, which were also modeled with the purpose of identifying the invasion of the drilling fluid. The specific surface area was obtained by image processing algorithms. The results showed an acceptable precision of this methodology to estimate the permeability in carbonate reservoirs that have in their composition fragments of stromatolites and associated bioclastics, found partially or totally dolomitized.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: Available online 20 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Yi Qian, Yaoshu Teng, Yuandong Li, Xiaojiang Lin, Ming Guan, Yong Li, Xiaolin Cao, Yueqiu Gao〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Dysregulated microRNAs (miRNAs) play crucial roles in the occurrence and development of multiple tumours, but their roles in the progression of nasal squamous cell carcinoma (NSCC) remain unknown. The aim of our study was to investigate the potential function and molecular mechanism of miR-143-3p in NSCC. Expression of miRNA and mRNA was detected by quantitative real-time reverse transcription-PCR (qRT-PCR). Forced overexpression of miR-143-3p was established by transfecting mimics into NSCC cell line. Then, we investigated the role of miR-143-3p in human NSCC cell proliferation, apoptosis, cycle and migration by using MTT, flow cytometry and transwell assays. Bioinformatics analysis, qRT-PCR, Western blot and luciferase reporter analysis were performed to validate the relationship between miR-143-3p and its potential targets. We found that miR-143-3p was substantially downregulated in human NSCC tissues and cell line. Forced upregulation of miR-143-3p significantly attenuated cell proliferation and migration. Furthermore, this change could induce apoptosis and G1-phase arrest of NSCC cells. Mechanistically, miR-143-3p directly targeted and significantly suppressed Bcl-2 and IGF1R expression. In summary, miR-143-3p regulation of the proliferation, apoptosis, cell cycle and migration of NSCC probably partly depends on inhibition of Bcl-2 and IGF1R, indicating that miR-143-3p may be a novel molecular therapeutic target for NSCC.〈/p〉〈/div〉 〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0006291X1931592X-fx1.jpg" width="272" alt="Image 1" title="Image 1"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: Available online 20 August 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochemical and Biophysical Research Communications〈/p〉 〈p〉Author(s): Emily M. Cross, David Aragão, Kate M. Smith, Karli I. Shaw, Jeffrey D. Nanson, Shane R. Raidal, Jade K. Forwood〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉〈em〉Acinetobacter baumannii〈/em〉 (〈em〉A. baumannii〈/em〉) is a clinically relevant, highly drug-resistant pathogen of global concern. An attractive approach to drug design is to specifically target the type II fatty acid synthesis (FASII) pathway which is critical in Gram negative bacteria and is significantly different to the type I fatty acid synthesis (FASI) pathway found in mammals. Enzymes involved in FASII include members of the short-chain dehydrogenase/reductase (SDR) superfamily. SDRs are capable of performing a diverse range of biochemical reactions against a broad spectrum of substrates whilst maintaining conserved structural features and sequence motifs. Here, we use X-ray crystallography to describe the structure of an SDR from the multi-drug resistant bacteria 〈em〉A. baumannii,〈/em〉 previously annotated as a putative FASII FabG enzyme. The protein was recombinantly expressed, purified, and crystallized. The protein crystals diffracted to 2.0 Å and the structure revealed a FabG-like fold. Functional assays revealed, however, that the protein was not active against the FabG substrate, acetoacetyl-CoA. This study highlights that database annotations may show the necessary structural hallmarks of such proteins, however, they may not be able to cleave substrates that are typical of FabG enzymes. These results are important for the selection of target enzymes in future drug development.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Qing He, Tian Dong, Sheng He, Gangyi Zhai〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Factors influencing the methane adsorption capacity (MAC) of marine-continental transitional facies shales have been identified applying a variety of techniques (e.g., total organic carbon (TOC) content, X-ray diffraction mineralogy, low-pressure CO〈sub〉2〈/sub〉 and N〈sub〉2〈/sub〉 adsorption, and methane adsorption analyses) on samples from the Upper Permian Longtan Formation, northern Guizhou Province, Southwest China. The TOC contents of the Longtan shale samples ranged between 1.2 and 9.9 wt% (average = 3.5 wt%). The results of the bulk XRD analysis suggested that the mineralogical composition of the studied samples was different from that of typical marine shales: the samples primarily consisted of clay minerals, followed by quartz and feldspar. The Langmuir volumes (V〈sub〉L〈/sub〉) of the 14 shale samples ranged from 1.02 ml/g to 5.25 ml/g (average = 2.52 ml/g); moreover, their MAC was positively correlated with the pore volume, surface area, and TOC content, suggesting that organic matter and pore structure were the most critical factors influencing the adsorption capacity of these transitional shales. Our results showed that the MAC was not positively with the clay content; additionally, the MAC tended to increase with increasing pressure, but to decrease with increasing temperature. The presence of moisture greatly reduced the MAC. Overall, the MAC of the transitional Longtan Formation shales resulted to be quite different from that of typical marine shales (e.g., the Lower Silurian Longmaxi Formation in the Sichuan Basin) in terms of mineralogical component and abundance of organic pores. The particularly high abundance of (hydrophilic) clay minerals in the Longtan Formation transitional shales resulted in a higher number of adsorption sites occupied by water molecules than in the Longmaxi Formation and a lower MAC. Finally, the abundance of organic pores in marine shales resulted in a higher MAC than that of transitional shales.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: December 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Journal of Petroleum Science and Engineering, Volume 183〈/p〉 〈p〉Author(s): Kaibo Zhou, Shuo Zhang, Zhen Huang, Jianyu Zhang〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Reservoir porosity obtained from time-domain induced polarization (TDIP) well logging plays a vital role in estimating the hydraulic properties and obtain the reservoir parameters in a water-flood oil-field. Improving the inversion accuracy of the reservoir porosity can enhance the oil recovery in the water-flood oil-filed. Evaluating reservoir pore size distribution through induced polarization decay curve is confronted with the problems of poor applicability of data pre-processing, low accuracy and lacking of evaluation criteria for inversion results of pore size distribution. The basic principles of TDIP are introduced and the relationship between pore relaxation time and pore diameter is given. Combining the mathematical characteristics of polarization decay curve data, the performance and the limitations of existing pre-processing algorithms are analyzed and pointed out, respectively. An improved data pre-processing algorithm using the spatial characteristics of linear transformation based on migration Hankel matrix is proposed, and this method improves the inversion accuracy of pore size distribution greatly. In the engineering application, 2-logarithmic sampling method is proposed to sample the polarization decay data for more efficient petroleum exploration with less sample points. The different regularization methods, regularization matrix and regularization parameter determination methods are compared and analyzed for the inversion of the pore size distribution. The numerical simulation experimental results show that the stability and accuracy of Truncated Singular Value Decomposition - Generalized Cross Validation (TSVD-GCV), Truncated Singular Value Decomposition - L Curve (TSVD-L) and Tikhonov-I-L are appropriate for the inversion of pore size distribution. Because of the truth that the pore size distribution of rock is unknown, Backus-Gilbert (BG) theory is introduced to evaluate the inversion results of rock polarization decay curve data of a mining area in Jilin Province. The rock sample experiment shows that the TSVD-GCV inversion algorithm has the best performance.〈/p〉〈/div〉 〈/div〉