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  • 1
    Publication Date: 2015-08-11
    Description: Anthropogenic activities have significantly altered atmospheric chemistry and changed the global mobility of key macronutrients. Here, we show that contemporary global patterns in nitrogen (N) and phosphorus (P) emissions drive large hemispheric variation in precipitation chemistry. These global patterns of nutrient emission and deposition (N:P) are in turn closely reflected in the water chemistry of naturally oligotrophic lakes ( r 2 =0.81, p 〈0.0001). Observed increases in anthropogenic N deposition play a role in nutrient concentrations ( r 2 =0.20, p 〈0.05); however, atmospheric deposition of P appears to be major contributor to this pattern ( r 2 =0.65, p 〈0.0001). Atmospheric simulations indicate a global increase in P deposition by 1.4 times the preindustrial rate largely due to increased dust and biomass burning emissions. Although changes in the mass flux of global P deposition are smaller than for N, the impacts on primary productivity may be greater because, on average, one unit of increased P deposition has 16X the influence of one unit of N deposition. These stoichiometric considerations, combined with the evidence presented here, suggest that increases in P deposition may be a major driver of alpine lake trophic status, particularly in the Southern Hemisphere. These results underscore the need for the broader scientific community to consider the impact of atmospheric phosphorus deposition on the water quality of naturally oligotrophic lakes.
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 2
    Publication Date: 2015-08-08
    Description: : As sequencing becomes cheaper and more widely available, there is a greater need to quickly and effectively analyze large-scale genomic data. While the functionality of AVIA v1.0, whose implementation was based on ANNOVAR, was comparable with other annotation web servers, AVIA v2.0 represents an enhanced web-based server that extends genomic annotations to cell-specific transcripts and protein-level functional annotations. With AVIA’s improved interface, users can better visualize their data, perform comprehensive searches and categorize both coding and non-coding variants. Availability and implementation : AVIA is freely available through the web at http://avia.abcc.ncifcrf.gov . Contact : Hue.Vuong@fnlcr.nih.gov Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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  • 3
    Publication Date: 2015-08-08
    Description: : As new methods for multivariate analysis of genome wide association studies become available, it is important to be able to combine results from different cohorts in a meta-analysis. The R package MultiMeta provides an implementation of the inverse-variance-based method for meta-analysis, generalized to an n -dimensional setting. Availability and implementation: The R package MultiMeta can be downloaded from CRAN. Contact: dragana.vuckovic@burlo.trieste.it ; vi1@sanger.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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  • 4
    Publication Date: 2015-08-13
    Description: The thinning of the crust and the exhumation of subcontinental mantle in magma-poor rifted margins is accompanied by a series of extensional detachment faults. We show that exhumation along these detachments is intimately related to migration of fluids leading to changes in mineralogy and chemistry of the mantle, crustal and sedimentary rocks. Using field observation and analytical methods, we investigate the role of fluids in the fossil distal margins of the Alpine Tethys. Using Cr-Ni-V, Fe and Mn as tracers, we show that fluids used detachment faults as pathways and interacted with the overlying crust and sediments. These observations allow us to discuss when, where and how this interaction happened during the formation of the rifted margin. The results show that: (i) serpentinization of mantle rocks during their exhumation results in the depletion of elements and migration of mantle-reacted fluids that are channeled along active detachment system; (ii) in earlier-stages, these fluids affected the overlying syn-tectonic sediments by direct migration from the underlying detachments; (iii) in later-stages, these fluids arrived at the seafloor, were introduced into, or “polluted” the seawater and were absorbed by post-tectonic sediments. We conclude that a significant amount of serpentinization occurred underneath the hyperextended continental crust, and that the mantle-reacted fluids might have modified the chemical composition of the sediments and seawater. We propose that the chemical signature of serpentinization related to mantle exhumation is recorded in the sediments and may serve as a proxy to date serpentinization and mantle exhumation at present-day magma-poor rifted margins. This article is protected by copyright. All rights reserved.
    Electronic ISSN: 1525-2027
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 5
    Publication Date: 2015-08-13
    Description: The East China Sea is characterized by wide continental shelf receiving a huge input of terrigenous matter from both large rivers and mountainous rivers, which makes it an ideal natural laboratory for studying sediment source-to-sink transport processes. This paper presents mineralogical and geochemical data of the clays and bulk sediments from the rivers entering the East China Sea, aiming to investigate the general driving mechanism of silicate weathering and sediment transport processes in East Asian continental margin. Two types of river systems, tectonically-stable continental rivers and tectonically-active mountainous rivers, co-exist in East Asia. As the direct weathering products, clays can better reflect the silicate weathering regimes within the two river systems. Provenance rock types are not the dominant factor causing silicate weathering intensity difference existed in the East Asian rivers. The silicate weathering intensity of tectonically-stable river basins is primarily driven by monsoon climate, and the sediment transfer is relatively slow because of natural trapping process and increasing damming effect. The geochemistry of these river-borne sediments can thus indicate paleo-weathering intensities in East Asian continent. In contrast, silicate weathering intensity in tectonically-active mountainous rivers is greatly limited by strong physical erosion despite the high temperature and highest monsoon rainfall. The factors controlling silicate weathering in tectonically-active catchments are complex and thus, it should be prudent to use river sediment records to decipher paleoclimate change. These two different silicate weathering regimes and sediment transport processes are manifestations of the landscape evolution and overall dominate the sedimentation in Asian continental margin. This article is protected by copyright. All rights reserved.
    Electronic ISSN: 1525-2027
    Topics: Chemistry and Pharmacology , Geosciences , Physics
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  • 6
    Publication Date: 2015-08-13
    Description: Diopside phenocrysts of the Louisville Seamount Trail show an increase in Ti, Al, and Na with decreasing Mg/(Mg+Fe) as is typical for clinopyroxene in alkalic basalts. Chondrite-normalized REE patterns of calculated liquids from LA-ICPMS analyses are comparable to whole-rock and glass values. Exceptions are clinopyroxene crystals from the Rigil Seamount, the second oldest seamount drilled at the northern end of the chain. Some crystals from this site are strongly zoned with distinct compositional boundaries between cores and mantles. The cores have high Mg/(Mg+Fe) and low Al and Ti concentrations compared to the mantles and phenocrysts. Major element, clinopyroxene discrimination diagrams indicate that the clinopyroxene mantles and phenocrysts crystallized from alkalic basalts. In contrast, the Mg-rich cores have tholeiitic affinities. The REE abundances of the cores are similar to that of clinopyroxene from transitional tholeiites of the Kerguelen Archipelago. Calculated liquid La/Yb values for the cores have ratios that are similar to transitional tholeiites in Hawaii, whereas the mantles have higher La/Yb values similar to Hawaiian alkalic basalts. The major and trace element compositions of clinopyroxene cores from the Rigil seamount suggest that a transitional tholeiitic magma was present, but no evidence for Hawaiian shield-type tholeiites was found. Plagioclase crystals from the Rigil seamount have 86 Sr/ 86 Sr from 0.70306 to 0.70363, within the range of FOZO. The transitional tholeiitic signature of the Mg-rich clinopyroxene cores probably did not have a distinct source compared to other Louisville magmas, but more likely indicates a higher degree of partial melting (2-5%) of that FOZO source. This article is protected by copyright. All rights reserved.
    Electronic ISSN: 1525-2027
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 7
    Publication Date: 2015-08-13
    Description: Understanding intraplate volcanism is a key to deciphering the Earth's magmatic history. One of the largest intraplate volcanic events occurred during the mid Cretaceous, roughly 75 to 125 Ma in the western Pacific. To investigate the origin and effects of this volcanism on various Earth systems, we present the first comprehensive study of volcanism in the Pigafetta Basin using seismic surveys, magnetic and gravity modeling, and Ocean Drilling Program drill core and well log data from Site 801. Our results show that intraplate volcanism in the Pigafetta Basin coincides with the rest of the western Pacific seamount provinces, supporting the previously suggested plumelets scenario for the origin of intraplate volcanism during the mid Cretaceous volcanic events. We also discover that the late stage volcanism does not overprint the remanant magnetization acquired by the Jurassic ocean crust in the Pigafetta Basin, and hence, marine magnetic anomalies recorded in the Jurassic basement are preserved. Also, the formerly identified Rough Smooth Boundary (RSB) is indistinguishable from any other rough-smooth topographic boundaries throughout the survey area suggesting that the RSB is unlikely to be a Cretaceous sill-Jurassic basement boundary. Lastly, the apparent ages and spatial distribution of volcanic features suggests a dynamic history of hydrothermal circulation in the Pigafetta Basin, indicating that hydrothermal circulation was ongoing well past 100 Ma. This article is protected by copyright. All rights reserved.
    Electronic ISSN: 1525-2027
    Topics: Chemistry and Pharmacology , Geosciences , Physics
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  • 8
    Publication Date: 2015-08-13
    Description: To quantify the balance between new production and vertical nitrogen export of sinking particles, we measured nitrate uptake, net nitrate drawdown, ΔO 2 /Ar-based net community production, sediment trap flux, and 234 Th export at a coastal site near Palmer Station, Antarctica during the phytoplankton growing season from October 2012 to March 2013. We also measured nitrate uptake and 234 Th export throughout the northern western Antarctic Peninsula (WAP) region on a cruise in January 2013. We used a non-steady state 234 Th equation with temporally-varying upwelling rates and an irradiance-based phytoplankton production model to correct our export and new production estimates in the complex coastal site near Palmer Station. Results unequivocally showed that nitrate uptake and net community production were significantly greater than the sinking particle export on region-wide spatial scales and season-long temporal scales. At our coastal site, new production (105±17.4 mg N m −2 d −1 , mean±st.err.) was 5.3 times greater than vertical nitrogen export (20.4±2.4 mg N m −2 d -1 ). On the January cruise in the northern WAP, new production (47.9±14.4 mg N m −2 d -1 ) was 2.4 times greater than export (19.9±1.4 mg N m −2 d −1 ). Much of this imbalance can be attributed to diffusive losses of particulate nitrogen from the surface ocean due to diapycnal mixing, indicative of a “leaky” WAP ecosystem. If these diffusive losses are common in other systems where new production exceeds export, it may be necessary to revise current estimates of the ocean's biological pump.
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 9
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    Wiley
    Publication Date: 2015-08-16
    Description: Cover: In Somes and Oschlies [doi 10.1002/2014GB005050 ], comparison of surface (0–50m) (a) map and (b) zonally averaged DON observations [Letscher et al., 2013] with annual semirecalcitrant DON from the model experiments (c) Redfield DOM (RedDOM), (d) preferential DOP remineralization (pref_DOP_remin), (e) preferential DOP recycling and phytoplankton DOP uptake (nonRedDOP), (f ) non-Redfield DOP with low DOM production (low_nonRedDOP), (g) non-Redfield DOP with high DOM production (high_nonRedDOP), and (h) fast recycling non-Redfield DOP (fast_nonRedDOP). Note that the zonally averaged model results in (b) are taken only from locations where observations exist. See pp. 973–993.
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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  • 10
    Publication Date: 2015-08-05
    Description: The direct respiration of sinking organic matter by attached bacteria is often invoked as the dominant sink for settling particles in the mesopelagic ocean. However, other processes, such as enzymatic solubilization and mechanical disaggregation, also contribute to particle flux attenuation by transferring organic matter to the water column. Here, we use observations from the North Atlantic Ocean, coupled to sensitivity analyses of a simple model, to assess the relative importance of particle-attached microbial respiration compared to the other processes that can degrade sinking particles. The observed carbon fluxes, bacterial production rates, and respiration by water column and particle-attached microbial communities each spanned more than an order of magnitude. Rates of substrate-specific respiration on sinking particle material ranged from 0.007 ± 0.003 to 0.173 ± 0.105 d -1 . A comparison of these substrate-specific respiration rates with model results suggested sinking particle material was transferred to the water column by various biological and mechanical processes nearly 3.5 times as fast as it was directly respired. This finding, coupled with strong metabolic demand imposed by measurements of water column respiration (729.3 ± 266.0 mg C m -2 d -1 , on average, over the 50 to 150 m depth interval), suggested a large fraction of the organic matter evolved from sinking particles ultimately met its fate through subsequent remineralization in the water column. At three sites, we also measured very low bacterial growth efficiencies and large discrepancies between depth-integrated mesopelagic respiration and carbon inputs.
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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