ALBERT

Description: The high elevation of the Southern Puna Plateau, the widespread melting of its crust, the gap in intermediate depth seismicity and the recent eruptions of ignimbrite complexes can be explained by delamination of the lithospheric mantle beneath it. To test this hypothesis, an array consisting of 73 broad band and short period seismic stations was deployed in the region for a period of two years starting in 2007. We inverted the data using the two plane wave approach and obtained 1D and 3D Rayleigh wave phase velocities. Our dispersion curve shows that at short periods (〈70 s) the phase velocities are slightly higher than those of the Tibetan plateau and lower than those of the Anatolian plateau. At periods of 100-140 s we observe a low velocity zone that might be remnant hot asthenosphere below a flat slab (7-10 Ma). We estimate the average continental lithosphere thickness for the region to be between 100 and 130 km. Our three dimensional Rayleigh wave phase velocities show a high velocity anomaly at low frequencies (0.007, 0.008 and 0.009 Hz) slightly to the north of Cerro Galan. This would be consistent with the hypothesis of delamination in which a piece of lithosphere has detached and caused upwelling of hot asthenosphere which in turn caused widespread alkaline-collision related volcanism. This interpretation is also corroborated by our shear wave velocity model where a high velocity anomaly beneath the northern edge of Cerro Galan at 130 km depth is interpreted as the delaminated block on top of the subducting Nazca slab.

Description: Aberrant glycosylation by N -acetylgalactosaminyl transferases (GALNTs) is a well-described pathological alteration that is widespread in hereditary diseases, prominently including human cancers, familial tumoral calcinosis and hyperostosis-hyperphosphatemia. In this study, we integrated different computational tools to perform the in silico analysis of clinically significant mutations (nsSNPs/ single amino acid change) at both functional and structural levels, found in human GALNT3, GALNT8, GALNT12 and GALNT13 genes. From function and structure based insights, mutations encoding R162Q, T359K, C574G, G359D, R297W, Y396C & D313N substitutions were concordantly predicted highly deleterious for relevant GALNTs proteins. From intriguing findings, T359K- GALNT3 was simulated with high contribution for disease susceptibility (tumor calcinosis) as compared to its partner variant T272K [Ichikawa et al., 2006]. Similarly, the prediction of high damaging behavior, evolutionary conservation and structural destabilization for C574G were proposed as major contributing factors to regulate metabolic disorder underlying tumor calcinosis and hyperostosis-hyperphosphatemia syndrome. In case of R297W- GALNT12 , prediction of highly deleterious effect and disruption in ionic interactions were anticipated with reduction in enzymatic activity, associated with bilateral breast cancer and primary colorectal cancers. The second GALNT12 mutation (D303N)-known splice variant- was predicted with disease severity as a result of decrease in charge density and buried behavior neighboring the catalytic B domain. In the lack of adequate in silico data about systematic characterization of clinically significant mutations in GALNTs genes, current study can be used as a significant tool to interpret the role of GALNTs reaction chemistry in disease-association risks in body. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Objective To investigate whether crosstalk between RUNX2 and miRNAs is involved in tooth eruption regulated by dental follicle cells(DFCs) and the possible molecular mechanism. Methods Blood samples and embedded dental follicles were collected from patients with cleidocranial dysplasia (CCD), and RUNX2 gene mutations were analyzed, then RUNX2 +/m DFCs were isolated and identified. The characteristics of RUNX2 +/m DFCs were analyzed. The differential expression of miRNAs was detected between the RUNX2 +/m DFCs and RUNX2 +/+ DFCs by microarray, and target genes were predicted by miRGen. miR-146a was chosen for further investigation, and its effects in DFCs were analyzed by transfecting its mimics and inhibitors, and expression of genes involved in tooth eruption were detected. Results A novel insertion mutation (c.309_310insTG) of RUNX2 gene was identified which had an effect on the characteristics of DFCs. Compared with the RUNX2 +/+ DFCs, there were 69 microRNAs more than 2-fold up-regulated and 54 microRNAs more than 2-fold down-regulated in the RUNX2 +/m DFCs. Among these, miR-146a decreased significantly in RUNX 2 +/m DFCs, and expression of RUNX2, CSF-1,EGFR and OPG was significantly altered when miR-146a was over-expressed or inhibited. Conclusion RUNX2 gene mutation contributes to the characteristic change of dental follicle cells, and the crosstalk between RUNX2 gene and miRNAs may be one of the key regulatory mechanisms of differentiation of dental follicle cells. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Cancer stem cells (CSC) have a central role in driving tumor growth. Since metabolism is becoming an important diagnostic and therapeutic target, characterization of CSC line energetic properties is an emerging need. Embryonic and adult stem cells, compared to differentiated cells, exhibit a reduced mitochondrial activity and a stronger dependence on aerobic glycolysis. Here, we aimed to comparatively analyze bioenergetics features of the human osteosarcoma 3AB-OS CSC-like line, and the parental osteosarcoma MG63 cells, from which 3AB-OS cells have been previously selected. Our results suggest that 3AB-OS cells depend on glycolytic metabolism more strongly than MG63 cells. Indeed, growth in glucose shortage or in presence of galactose or pyruvate -mitochondrial specific substrates- leads to a significant reduction of their proliferation compared to MG63 cells. Accordingly, 3AB-OS cells show an increased expression of lactate dehydrogenase A (LDHA) and a larger accumulation of lactate in the culture medium. In line with these findings 3AB-OS cells as compared to MG63 cells present a reduced mitochondrial respiration, a stronger sensitivity to glucose depletion or glycolysis inhibition and a lessened sensitivity to oxidative phosphorylation inhibitors. Additionally, in contrast to MG63 cells, 3AB-OS display fragmented mitochondria, which become networked as they grow in glucose-rich medium, while almost entirely loose these structures growing in low glucose. Overall, our findings suggest that 3AB-OS CSCs energy metabolism is more similar to normal stem cells and to cancer cells characterized by a glycolytic anaerobic metabolism. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Areca chewing is an important environmental risk factor for development of oral premalignant lesions and cancer. Epidemiological evidence indicates that areca chewing is tightly linked to oral carcinogenesis. However, the pathogenetic impacts of areca nut extract (ANE) on normal human oral keratinocytes (HOKs) are unclear and possibly involve oxidative stress via redox imbalance. Sirtuin 3 (SIRT3) is a member of the sirtuin family of proteins that play an important role in regulating cellular reactive oxygen species (ROS) production. Recent studies have confirmed that ANE and other areca ingredients can induce ROS. In this study, we examined the role of SIRT3 in the regulation of ANE-induced ROS in HOK cells. We examined HOK cell viability following treatment with various ANE concentrations. ANE-induced cytotoxicity increased in a dose-dependent manner and was approximately 48% at a concentration of 50 μg/ml after 24 h. SIRT3 expression and enzyme activity were up-regulated in HOK cells by ANE-induced oxidative stress. Additionally, we identified that SIRT3 controls the enzymatic activity of mitochondrial proteins, such as forkhead box O3a (Foxo3a) transcription factor and antioxidant-encoding gene superoxide dismutase 2 (SOD2), by deacetylation in HOK cells. Moreover, SIRT3-mediated deacetylation and activation of Foxo3a promotes nuclear localization in vivo . These findings suggest that SIRT3 is an endogenous negative regulator in response to ANE-induced oxidative stress and demonstrate an essential role for redox balance in HOK cells. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Collagen is the most abundant structural protein in mammals and is expressed in various tissues. In recent years, sphingosine 1-phosphate receptors (S1PRs) have been proven to play an important role in the regulation of collagen expression. Our previous studies reported that S1PRs are involved in TGF-β1-induced collagen expression via up-regulating S1PR1/3 in mouse bone marrow-derived mesenchymal stem cells (BMSCs), and result in experimental mouse liver fibrogenesis. But it remains unclear whether this process happens in human bone marrow-derived mesenchymal stem cells (hMSCs). In this study, we provide evidences that S1PR1/3, but not S1PR2, negatively regulate the expression of collagen in hMSCs using cellular and molecular approaches in vitro . We find that treatment of hMSCs with TGF-β1 up-regulated collagen expression in a dose- and time-dependent manner. Meanwhile, TGF-β1 inhibited the expression of S1PR1/3, but not S1PR2, in hMSCs in a time-dependent manner. Furthermore, either selective knock-down of S1PR1 or silencing S1PR3 induced collagen α1(I) and collagen α1(III) expression in hMSCs. In contrast, inhibition of S1PR2 by siRNA had no effects on the expression of collagen. Altogether, all these findings demonstrated that collagen expression was negatively regulated by S1PR1 and S1PR3 in hMSCs. This study highlights the differences between hMSCs and mouse BMSCs, provides a new regulation mechanism for collagen expression, and points out the risk of utilizing hMSCs in clinical applications. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Chlorine isotope compositions of high-pressure (~2.3 GPa) serpentinite, rodingite, and hydrothermally altered oceanic crust (AOC) differ significantly from high- and ultrahigh-pressure (〉3.2 GPa) metasedimentary rocks in the Aosta region, Italy. Texturally early serpentinites, rodingites, and AOC have bulk δ 37 Cl values indistinguishable from those of modern seafloor analogues (δ 37 Cl = -1.0 to +1.0‰). In contrast, serpentinites and AOC samples that recrystallized during exhumation have low δ 37 Cl values (-2.7 to -0.5‰); 37 Cl depletion correlates with progressive changes in bulk chemistry. HP/UHP metasediments have low δ 37 Cl values (median = -2.5‰) that differ statistically from modern marine sediments (median = -0.6‰). Cl in metasedimentary rocks is concentrated in texturally early minerals, indicating modification of seafloor compositions early in the subduction history. The data constrain fluid sources during both subduction- and exhumation-related phases of fluid-rock interaction: (1) Marine sediments at the top of the downgoing plate likely interacted with isotopically light pore fluids from the accretionary wedge in the early stages of subduction. (2) No pervasive interaction with externally derived fluid occurred during subsequent subduction to the maximum depths of burial. (3) Localized mixing between serpentinites and fluids released by previously isotopically modified metasediments occurred during exhumation in the subduction channel. Most samples, however, preserved protolith signatures during subduction to near-arc depths.

Description: We have measured Ni, Ca, and Mn in olivine phenocrysts from volcanoes in the Galápagos Archipelago to infer the mantle source lithologies. Results show that peridotite is the dominant source lithology for Fernandina, Floreana, Genovesa, Wolf Island, and Darwin Island. These volcanoes largely characterize the PLUME, WD, FLO and DUM Nd, Sr, and Pb isotopic endmembers of Harpp and White (2001). Volcan Wolf, Alcedo, Marchena, and Cerro Azul, also produced from the melting of peridotite sources, have isotopic compositions that can be defined by mixing of the 4 isotopic endmembers. Our analysis suggests that peridotite was present in the sources of the volcanoes covered in this study and therefore is the dominant source lithology of the Galápagos plume. Pyroxenite melting is generally focused in two isotopically distinct domains: Roca Redonda, Volcan Ecuador, and Sierra Negra in the enriched western part of the archipelago, and Santiago, Santa Cruz, and Santa Fe in the depleted east. One implication of this finding is that the Western and Eastern Pyroxenite Domains represent two separate bodies of recycled crust within the Galápagos mantle plume. Furthermore, both isotopically enriched and depleted domains of the archipelago were generated from mixtures of peridotite and pyroxenite. This suggests that there is no relationship between the source lithology of the Galápagos plume and its isotopic characteristics. The identification of peridotite source melting in volcanoes with isotopic characteristics that have been attributed to recycled crust points to the importance of mixing in OIB genesis, consistent with studies in the Canary Islands.

Description: Lymph nodes are often the first target of metastatic cancer which can then remetastasize to distant organs. The progression of lymph node metastasis is dependent on sufficient blood supply provided by angiogenesis. In the present study, we have developed a color-coded imaging model to visualize angiogenesis of lymph nodes metastasis using green fluorescent protein (GFP) and red fluorescent protein (RFP). Transgenic mice carrying GFP under the control of the nestin second-intron enhancer (ND-GFP mice) were used as hosts. Nascent blood vessels express GFP in these mice. B16F10-RFP melanoma cells were injected into the efferent lymph vessel of the inguinal lymph node of the ND-GFP nude mice, whereby the melanoma cells trafficked to the axillary lymph node. Three days after melanoma implantation, ND-GFP-expressing nascent blood vessels were imaged in the axillary lymph nodes. Seven days after implantation, ND-GFP-expressing nascent blood vessels formed a network in the lymph nodes. ND-GFP-positive blood vessels surrounded the tumor mass by 14 days after implantation. However, by 28 days after implantation, ND-GFP expression was diminished as the blood vessels matured. Treatment with doxorubicin significantly decreased the mean nascent blood vessel length per tumor volume. These results show that the dual-color ND-GFP blood vessels/RFP-tumor model is a powerful tool to visualize and quantitate angiogenesis of metastatic lymph nodes as well as for evaluation of its inhibition. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Paleomagnetic analysis and radiocarbon dating of an expanded Holocene deep-sea sediment sequence recovered by Integrated Ocean Drilling Program (IODP) Expedition 303 from Labrador Sea Site U1305 (Lat: 57°28.5 N, Long. 48°31.8 W, water depth 3459 m) provides insights into mechanisms that drive both paleomagnetic secular variation (PSV) and magnetization acquisition in deep-sea sediments. Seventeen radiocarbon dates on planktonic foraminifera define postglacial (c. 8 ka) sedimentation rates as ranging from 35 to 〉 90 cm/kyr. Alternating field (AF) demagnetization of u-channel samples show that these homogeneous sediments preserve a strong, stable, and consistently well-defined component magnetization. Normalized remanence records pass reliability criteria for relative paleointensity (RPI) estimates. Assuming that the age of magnetization is most accurately defined by well dated PSV records with the highest sedimentation rates, allows us to estimate and correct for temporal offsets at Site U1305 interpreted to result from post-depositional remanence acquisition at a depth of ~ 20 cm. Comparisons indicate that the northern North Atlantic PSV and RPI records are more consistent with European than North American records, and the evolution of virtual geomagnetic poles (VGP) are temporally and longitudinally similar to global reconstructions, though with much larger latitudinal variation. The largest deviations from a geocentric axial dipole (GAD) are observed during times of the highest intensities, in contrast to the usual assumption. These observations are consistent with the idea that PSV in the North Atlantic and elsewhere during the Holocene results from temporal oscillations of high latitude flux concentrations at a few recurrent locations.

Description: The conditions permitting mantle serpentinization during continental rifting are explored within 2D thermotectonostratigraphic basin models, which track the rheological evolution of the continental crust, account for sediment blanketing effects, and allow for kinetically controlled mantle serpentinization processes. The basic idea is that the entire extending continental crust has to be brittle for crustal scale faulting and mantle serpentinization to occur [ Perez-Gussinye and Reston , 2001]. The isostatic and latent heat effects of the reaction are fully coupled to the structural and thermal solutions. A systematic parameter study shows that a critical stretching factor exists for which complete crustal embrittlement and serpentinization occurs. Increased sedimentation rates shift this critical stretching factor to higher values as sediment blanketing effects result in higher crustal temperatures. Sediment supply has therefore, through the temperature-dependence of the viscous flow laws, strong control on crustal strength and mantle serpentinization reactions are only likely when sedimentation rates are low and stretching factors high. In a case study for the Norwegian margin we test whether the inner lower crustal bodies (LCB) imaged beneath the Møre and Vøring margin could be serpentinized mantle. Multiple 2D transects have been reconstructed through the 3D data set by Scheck-Wenderoth and Maystrenko [2011]. We find that serpentinization reactions are possible and likely during the Jurassic rift phase. Predicted thicknesses and locations of partially serpentinized mantle rocks fit to information on LCBs from seismic and gravity data. We conclude that some of the inner LCBs beneath the Norwegian margin may be partially serpentinized mantle.

Description: The cytoplasmic signaling protein tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5), which was identified as a signal transducer for members of the TNF receptor super-family, has been implicated in several biological functions in T/B lymphocytes and the innate immune response against viral infection. However, the role of TRAF5 in cardiac hypertrophy has not been reported. In the present study, we investigated the effect of TRAF5 on the development of pathological cardiac hypertrophy induced by transthoracic aorta constriction (TAC) and further explored the underlying molecular mechanisms. Cardiac hypertrophy and function were evaluated with echocardiography, hemodynamic measurements, pathological and molecular analyses. For the first time, we found that TRAF5 deficiency substantially aggravated cardiac hypertrophy, cardiac dysfunction and fibrosis in response to pressure overload after 4 weeks of TAC compared to wild-type (WT) mice. Moreover, the mitogen-activated protein/extracellular signal-regulated kinase kinase (MEK)-extracellular signal-regulated kinases 1/2 (ERK1/2) signaling pathway was more activated in TRAF5-deficient mice than WT mice. In conclusion, our results suggest that as an intrinsic cardioprotective factor, TRAF5 plays a crucial role in the development of cardiac hypertrophy through the negative regulation of the MEK-ERK1/2 pathway. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: The SON protein is a ubiquitously expressed DNA- and RNA-binding protein primarily localized to nuclear speckles. Although several early studies implicated SON in DNA-binding, tumorigenesis and apoptosis, functional significance of this protein had not been recognized until recent studies discovered SON as a novel RNA splicing co-factor. During constitutive RNA splicing, SON ensures efficient intron removal from the transcripts containing suboptimal splice sites. Importantly, SON-mediated splicing is required for proper processing of selective transcripts related to cell cycle, microtubules/centrosomes maintenance, and genome stability. Moreover, SON regulates alternative splicing of RNAs from the genes involved in apoptosis and epigenetic modification. In addition to the role in RNA splicing, SON has an ability to suppress transcriptional activation at certain promoter/enhancer DNA sequences. Considering the multiple SON target genes which are directly involved in cell proliferation, genome stability and chromatin modifications, SON is an emerging player in gene regulation during cancer development and progression. Here, we summarize available information from several early studies on SON, and highlight recent discoveries describing molecular mechanisms of SON-mediated gene regulation. We propose that our future effort on better understanding of diverse SON functions would reveal novel targets for cancer therapy. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Background Podocytes are a terminally differentiated and highly specialized cell type in the glomerulus that forms a crucial component of the glomerular filtration barrier. Recently, Myo1e was identified in the podocytes of glomeruli. Myo1e podocyte-specific knockout mice exhibit proteinuria, podocyte foot process effacement, glomerular basement membrane disorganization, signs of chronic renal injury, and kidney inflammation. Materials and Methods After overexpression of Myo1e in a conditionally immortalized mouse podocyte cell line (MPC5), podocyte migration was evaluated via transwell assay, endocytosis was evaluated using FITC-transferrin, and adhesion was evaluated using a detachment assay after puromycin aminonucleoside treatment. Results Myo1e overexpression significantly increased the adherence of podocytes. ANOVA analysis indicated significant differences for cell adhesion between the overexpression and control groups (overexpression vs. control, t = 11.3199, P = 0.005; overexpression vs. negative control, t = 12.0570, P = 0.0006). Overexpression of Myo1e inhibited puromycin aminonucleoside-induced podocyte detachment, and the number of cells remaining on the bottom of the culture plate increased. Cell migration was enhanced in Myo1e-overexpressing podocytes in the transwell migration assay. Internalization of FITC-transferrin also increased in Myo1e-overexpressing podocytes relative to control cells. Conclusions Overexpression of Myo1e can enhance podocyte migration ability, endocytosis, and attachment to the glomerular basement membrane. Restoration of Myo1e expression in podocytes may therefore strengthen their functional integrity against environmental and mechanical injury. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Indoleamine 2,3-dioxygenase-1 (IDO1) catabolizes the essential amino acid tryptophan, acting as a modifier of inflammation and immune tolerance. Recent work has implicated IDO1 in many human diseases, including in cancer, chronic infection, autoimmune disorders and neurodegenerative disease, stimulating a major surge in preclinical and clinical studies of its pathogenic functions. In the mouse, IDO1 is expressed widely but in situ detection of the enzyme in murine tissues has been unreliable due to the lack of specific antibodies that do not also react with tissues from animals that are genetically deficient in IDO1. Such probes are crucial to establish cellular mechanisms since IDO1 appears to act in different cell types depending on disease context, but reliable probes have been elusive in the field. In this report, we address this issue with the development of IDO1 monoclonal antibody 4B7 which specifically recognizes the murine enzyme in tissue sections, offering a reliable tool for immunohistology in preclinical disease models. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: There is a rapidly growing body of literature on the effects of topography and critically, nanotopography on cell adhesion, apoptosis and differentiation. Understanding the effects of nanotopography on cell adhesion and morphology and the consequences of cell shape changes in the nucleus, and consequently, gene expression offers new approaches to the elucidation and potential control of stem cell differentiation. In the current study we have used molecular approaches in combination with immunohistology and transcript analysis to understand the role of nanotopography on mesenchymal stem cell morphology and phenotype. Results demonstrate large changes in cell adhesion, nucleus and lamin morphologies in response to the different nanotopographies. Furthermore, these changes relate to alterations in packing of chromosome territories within the interphase nucleus. This, in turn, leads to changes in transcription factor activity and functional (phenotypical) signalling including cell metabolism. Nanotopography provides a useful, non-invasive tool for studying cellular mechanotransduction, gene and protein expression patterns, through effects on cell morphology. The different nanotopographies examined, result in different morphological changes in the cyto- and nucleo-skeleton. We propose that both indirect (biochemical) and direct (mechanical) signalling are important in these early stages of regulating stem cell fate as a consequence of altered metabolic changes and altered phenotype. The current studies provide new insight on cell–surface interactions and enhance our understanding of the modulation of stem cell differentiation with significant potential application in regenerative medicine. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Trypanosoma cruzi is the etiological agent of Chagas disease. The parasite has to overcome oxidative damage by ROS/RNS all along its life cycle to survive and to establish a chronic infection. We propose that T. cruzi is able to survive, among other mechanisms of detoxification, by repair of its damaged DNA through activation of the DNA base excision repair (BER) pathway. BER is highly conserved in eukaryotes with apurinic/apirimidinic endonucleases (APEs) playing a fundamental role. Previous results showed that T. cruzi exposed to hydrogen peroxide and peroxinitrite significantly decreases its viability when co-incubated with methoxyamine, an AP endonuclease inhibitor. In this work the localization, expression and functionality of two T. cruzi APEs (TcAP1, Homo sapiens APE1 orthologous and TcAP2, orthologous to Homo sapiens APE2 and to Schizosaccaromyces pombe Apn2p) were determined. These enzymes are present and active in the two replicative parasite forms (epimastigotes and amastigotes) as well as in the non-replicative, infective trypomastigotes. TcAP1 and TcAP2 are located in the nucleus of epimastigotes and their expression is constitutive. Epimastigote AP endonucleases as well as recombinant TcAP1 and TcAP2 are inhibited by methoxyamine. Overexpression of TcAP1 increases epimastigotes viability when they are exposed to acute ROS/RNS attack. This protective effect is more evident when parasites are submitted to persistent ROS/RNS exposition, mimicking nature conditions. Our results confirm that the BER pathway is involved in T. cruzi resistance to DNA oxidative damage and points to the participation of DNA AP endonucleases in parasite survival. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: The origin of the Bermuda swell and volcanism remains enigmatic. The lack of an associated time-progressive hotspot track and absence of present-day volcanic activity make it difficult to reconcile with a deep mantle plume model. We analyze shear wave splitting measurements to estimate mantle flow direction and receiver function stacks to place constraints on the mantle transition zone thermal structure. *KS phases exhibit well-resolved null arrivals (no splitting) beneath the swell over a range of back azimuths. We find that the 410 and 660 km discontinuities are 49 ± 5 km and 19 ± 5 km deeper than the global average, respectively, leading to a transition zone thickness that is 27 ± 4 km thinner than average. Together, an apparently isotropic upper mantle and a thinned mantle transition zone suggest that mantle flow is primarily vertical beneath the swell, consistent with the presence of hot, buoyant mantle at depth.

Description: Active glutamine utilization is critical for tumor cell proliferation. Glutaminolysis represents the first and rate-limiting step of glutamine utilization and is catalyzed by glutaminase (GLS). Activation of ErbB2 is one of the major causes of breast cancers, the second most common cause of death for women in many countries. However, it remains unclear whether ErbB2 signaling affects glutaminase expression in breast cancer cells. In this study, we show that MCF10A-NeuT cell line has higher GLS1 expression at both mRNA and protein levels than its parental line MCF10A, and knockdown of ErbB2 decreases GLS1 expression in MCF10A-NeuT cells. We further show that in these cells, ErbB2-mediated upregulation of GLS1 is not correlated to c-Myc expression. Moreover, activation of neither PI3K-Akt nor MAPK pathway is sufficient to upregulate GLS1 expression. Interestingly, inhibition of NF-κB blocks ErbB2-stimulated GLS1 expression, whereas stimulation of NF-κB is sufficient to enhance GLS1 levels in MCF10A cells, suggesting a PI3K-Akt-independent activation of NF-κB upregulates GLS1 in ErbB2-positive breast cancer cells. Finally, knockdown or inhibition of GLS1 significantly decreased cell proliferation of breast cancer cells with high GLS1 levels. Taken together, our data indicate that ErbB2 activation promotes GLS1 expression via a PI3K-Akt-independent NF-κB pathway in breast cancer cells, identifying another oncogenic signaling pathway which stimulates GLS1 expression, and thus promoting glutamine utilization in cancer cells. These findings, if validated by in vivo model, may facilitate the identification of novel biochemical targets for cancer prevention and therapy. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Tissue injury and inflammation are associated with increased production of reactive oxygen species (ROS), which have the ability to induce oxidative injury to various biomolecules resulting in e.g. protein dysfunction or cell death. However, recent observations indicate that formation of hydrogen peroxide (H 2 O 2 ) during tissue injury is also an essential feature of the ensuing wound healing response, and functions as an early damage signal to control several critical aspects of the wound healing process. Because innate oxidative wound responses must be tightly coordinated to avoid chronic inflammation or tissue injury, a more complete understanding is needed regarding the origins and dynamics of ROS production, and their critical biological targets. This Prospect highlights the current experimental evidence implicating H 2 O 2 in early epithelial wound responses, and summarizes technical advances and approaches that may help distinguish its beneficial actions from its more deleterious actions in conditions of chronic tissue injury or inflammation. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: We present an improved density model and a new structural map of the Neapolitan Yellow Tuff caldera, the active portion of the nested Campi Flegrei caldera. The model was built using a new 3D inversion of the available high-precision gravity data, and a new digital terrain and marine model. The inversion procedure, based on a variable-depth lumped assembling of the subsurface gravity distribution via cell aggregation, gives better defined insights into the internal caldera architecture, that well agree with the available geological, geophysical and geochemical data. The adopted 3D gravity method is highly efficient for characterizing the shallow caldera structure (down to 3 km depth) and defining features related to regional or volcano tectonic lineaments and dynamics. In particular, the resulting density distribution highlights a pronounced density low in correspondence of the central portion of the caldera with a detail not available till now. The joint interpretation of the available data, suggests a subsurface structural setting that supports a piecemeal collapse of the caldera, and allows the identification of its headwall. Positive gravity anomalies localize dense intrusions (presently covered by late volcanic deposits) along the caldera marginal faults, and the main structural lineaments both bordering the resurgent block and cutting the caldera floor. These results allow us to both refine the current geological-structural framework and propose a new structural map that highlights the caldera boundary and its internal setting. This map is useful to interpret the phenomena occurring during unrest, and to improve both short- and long-term volcanic hazards assessment.

Description: Catastrophic collapses of submarine volcanoes have the potential to generate major tsunami, threatening many coastal populations. Recognizing the difficulties surrounding anticipations of these events, quantitative assessment of collapse-prone regions based on detailed morphological, geological and geophysical mapping can still provide important information about the hazards associated with these collapses. Rumble III is one of the shallowest, and largest, submarine volcanoes found along the Kermadec arc, and is both volcanically and hydrothermally active. Previous surveys have delineated major collapse features at Rumble III; based on time-lapse bathymetry, dramatic changes in the volcano morphology have been shown to have occurred over the interval 2007 to 2009. Furthermore, this volcano is located just ˜300 km from the east coast of the North Island of New Zealand. Here, we present a geophysical model for Rumble III, that provides the locations and sizes of potential weak regions of this volcano. Shipborne and near-seafloor geological and geophysical data collected by the AUV Sentry are used to determine the subsurface distribution of weak and unstable volcanic rocks. The resulting model provides evidence for potentially unstable areas located in the Southeastern flank of this volcano which should be included in future hazard predictions.

Description: Broadband seismic experiments over the last two decades have produced dense data coverage across Tibet. Yet, the mechanism of the India-Asia lithospheric convergence beneath it remains a puzzle, with even its basic features debated and with very different end-member models advocated today. We measured highly accurate Rayleigh- and Love-wave phase-velocity curves in broad period ranges (up to 5-200 s) for a few tens of pairs and groups of stations across Tibet, combining, in each case, hundreds to thousands of inter-station measurements made with cross-correlation and waveform-inversion methods. Robust shear-velocity profiles were then determined by extensive series of non-linear inversions of the data, designed to constrain the depth-dependent ranges of isotropic-average shear speeds and radial anisotropy. Temperature anomalies in the upper mantle were estimated from shear velocities using accurate petro-physical relationships. Our results reveal strong heterogeneity in the upper mantle beneath Tibet. Very large high-velocity anomalies in the upper mantle are consistent with the presence of underthrust (beneath southwestern Tibet) and subducted (beneath central and eastern Tibet) Indian lithosphere. The lithosphere. In contrast to the Indian lithosphere, Tibetan lithosphere and asthenosphere display low to normal shear speeds; Tibetan lithosphere is thus warm and thin. Radial anisotropy in the upper mantle is weak in central and strong in northeastern Tibet, possibly reflecting asthenospheric flow above the subducting Indian lithospheric slab.

Description: The Pacific Northwest (PNW) has experienced voluminous intraplate volcanism over the past ~17 Ma, beginning with the Steens/Columbia River flood basalts and continuing with the still-ongoing volcanism in the High Lava Plains (HLP) and eastern Snake River Plain (SRP). Here we present two complementary datasets (SKS splitting and Rayleigh wave phase velocity anisotropy) that place constraints on the anisotropic structure of the upper mantle beneath the HLP and SRP regions. Beneath the HLP, SKS phases reveal dominantly E-W fast splitting directions and large (up to ~2.7 sec) delay times, with pronounced lateral variations in δ t . Lateral and depth variability in the strength of anisotropy beneath the HLP is also evident from Rayleigh wave dispersion. Beneath the SRP, SKS splitting delay times are much smaller (~0.5 sec) and surface wave observations suggest a region of upper mantle anisotropy (~50-150 km depth) with a geometry that deviates significantly from the generally plate motion parallel fast directions observed just outside of the SRP. Beneath the HLP, the geometry of the anomalously strong anisotropy is similar to the anisotropy in the deeper parts of the upper mantle, resulting in constructive interference and large SKS splitting delay times. Beneath the SRP, the geometry of the anomalous anisotropic region in the shallow mantle is different, resulting in destructive interference and reduced SKS splitting delay times. We discuss several possible explanations for these observations, including variations in olivine lattice preferred orientation (LPO) strength, transitions in olivine fabric type, and a contribution from aligned partial melt.

Description: The bulk composition of the silicate portion of the Earth (BSE) has long been assumed to be tied to chondrites, in which refractory, lithophile elements like Sm and Nd exist in chondritic relative abundances. However, the 142 Nd/ 144 Nd ratios of modern terrestrial samples are 18±5 ppm higher than the ordinary-chondrite reservoir, and this challenges the traditional BSE model. Here we investigate a hypothesis that this terrestrial 142 Nd excess is related to a Sm/Nd ratio 6% higher than chondritic. This Sm/Nd ratio yields a superchondritic 143 Nd/ 144 Nd (~0.5130) similar to that identified in the highest 3 He/ 4 He mantle reservoir, and we argue that this reservoir represents the BSE composition for lithophile elements. We develop a compositional model for BSE in which the elevated Sm/Nd requires a shift of 143 Nd/ 144 Nd from 0.51263 (chondritic) to 0.51300. The new BSE composition is depleted in highly incompatible elements, including K, relative to the chondrite-based BSE, and offers a solution the “missing” 40 Ar paradox. This BSE compositional model requires that 〉83% of the mantle is depleted to form continental crust. It also implies a ~30% reduction in BSE U, Th and K, and therefore in the current rate of radiogenic heating and, thus, a proportional increase in the heat flow delivered to surface by plate tectonics. We explore thermal history models including effects related to a newly recognized evolution in the style of plate tectonics over Earth history: The lower radiogenic heat production may delay the onset of core convection and dynamo action to as late as 3.5 Gyr.

Description: Hepatocytes can be generated from embryonic stem cells (ESCs) using inducers such as chemical compounds and cytokines, but issues related to low differentiation efficiencies remain to be resolved. Recent work has shown that overexpression of lineage-specific transcription factors can directly cause cells phenotypic changes, including differentiation, trans-differentiation, and de-differentiation. We hypothesized that lentivirus-mediated constitutive expression of forkhead box A2 (Foxa2) and hepatocyte nuclear factor 4 alpha (Hnf4a) could promote inducing mouse ESCs to hepatocyte-likes cells. First, ESC lines that stably expressed Foxa2, Hnf4a or Foxa2/Hnf4a were constructed via lentiviral expression vectors. Second, observations of cell morphology changes were made during the cell culture process, followed by experiments examining teratoma formation. Then, the effects of constitutive expression of Foxa2 and Hnf4a on hepatic differentiation and maturation were determined by measuring the marker gene expression levels of Albumin, α-fetoprotein, Cytokeratin18, and α1-antitrypsin. The results indicate that constitutive expression of Foxa2 and Hnf4a does not affect ESCs culture, teratoma formation, or the expression levels of the specific hepatocyte genes under autonomous differentiation. However, with some assistance from inducing factors, Foxa2 significantly increased the hepatic differentiation of ESCs, whereas the expression of Hnf4a alone or Foxa2/Hnf4a could not. Differentiated CCE-Foxa2 cells were more superior in expressing several liver-specific markers and protein, storing glycogen than differentiated CCE cells. Therefore, our method employing the transduction of Foxa2 would be a valuable tool for the efficient generation of functional hepatocytes derived from ESCs. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: The definition of the secretome signature of a cancer cell line can be considered a potential tool to investigate tumor aggressiveness and a preclinical exploratory study required to optimize the search of cancer biomarkers. Dealing with a cell-specific secretome limits the contamination by the major components of the human serum and reduces the range of dynamic concentrations among the secreted proteins, thus favouring under-represented tissue-specific species. The aim of the present study is to characterize the secretome of two human colon carcinoma cell lines, CaCo-2 and HCT-GEO, in order to evaluate differences and similarities of two colorectal cancer model systems. In this study, we identified more than 170 protein species, 64 more expressed in the secretome of CaCo-2 cells and 54 more expressed in the secretome of HCT-GEO cells; 58 proteins were shared by the two systems. Among them, more than 50% were deemed to be secretory according to their Gene Ontology annotation and/or to their SignalP or SecretomeP scores. Such a characterization allowed to corroborate the potential of a cell culture-based model in order to describe the cell-specific invasive properties and to provide a list of putative cancer biomarkers. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: The cytoplasmic C-terminus of connexin43 (Cx43) interacts with numerous signaling complexes. We hypothesize that signal complex docking to the Cx43 C-terminus (CT) is required to propagate the molecules being shared by gap junctions. We have previously shown that Cx43 impacts the responsiveness of osteoblasts to FGF2 in a PKCδ- and ERK-dependent manner, converging on Runx2 activity. Here, we mapped the interaction domain of Cx43 and PKCδ to amino acids 243-302 of the Cx43 CT by GST pulldown assay. Using Runx2-responsive luciferase reporter assays, a Cx43 deletion construct (Cx43 S244Stop), which lacks the C-terminus (amino acids 244 to 382), failed to support the Cx43-dependent potentiation of transcription following FGF2 treatment in MC3T3 osteoblast-like cells. Similarly, overexpression of Cx43 S244Stop could not mimic the ability of the full length Cx43 to stimulate expression of osteoblast genes. In contrast to full length Cx43, overexpression of just the Cx43 CT (amino acids 236 to 382) inhibited both transcription from a Runx2 reporter and signaling via PKCδ and ERK. Inhibition of signaling by the CT did not occur in HeLa cells, which lack endogenous Cx43. In summary, the data support a model in which an intact Cx43 is required for both signal propagation/permeability (i.e., channel function) and local recruitment of signaling complexes to the CT (i.e., docking function) in order to mediate its cellular effects. Further, while the CT alone has channel independent activity, it is opposing to the effect of overexpression of the full length Cx43 channel. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Hyperglycaemia, a characteristic feature of diabetes mellitus, induces endothelial dysfunction and vascular complications by accelerating endothelial cell (EC) senescence and limiting the proliferative potential of these cells. Here we aimed to investigate the effect of stachydrine, a proline betaine present in considerable quantities in juices from fruits of the Citrus genus, on EC under high-glucose stimulation, and its underlying mechanism. The senescence model of EC was set up by treating cells with high-glucose (30 mM) for different times. Dose-dependent (0.001-1mM) evaluation of cell viability revealed that stachydrine does not affect cell proliferation with a similar trend up to 72 h. Noticeable, stachydrine (0.1 mM) significantly attenuated the high-glucose induced EC growth arrest and senescence. Indeed, co-treatment with high-glucose and stachydrine for 48 h kept the percentage of EC in the G 0 /G 1 cell cycle phase near to control values and significantly reduced cell senescence. Western blot analysis and confocal-laser scanning microscopy revealed that stachydrine also blocked the high-glucose induced upregulation of p16 INK4A and downregulation of SIRT1 expression and enzyme activity. Taken together, results here presented are the first evidence that stachydrine, a naturally occurring compound abundant in citrus fruit juices, inhibits the deleterious effect of high-glucose on EC and acts through the modulation of SIRT1 pathway. These results may open new prospective in the identification of stachydrine as an important component of healthier eating patterns in prevention of cardiovascular diseases. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Rett Syndrome (RTT) is one of most prevalent female neurodevelopmental disorders. De novo mutations in X-linked MECP2 are mostly responsible for RTT. Since the identification of MeCP2 as the underlying cause of RTT, murine models have contributed to understanding the pathophysiology of RTT and function of MeCP2. Reprogramming is a procedure to produce induced pluripotent stem cells (iPSCs) by overexpression of four transcription factors. iPSCs obtain similar features as embryonic stem cells and are capable of self-renewing and differentiating into cells of all three layers. iPSCs have been utilized in modeling human diseases in vitro. Neurons differentiated from RTT-iPSCs showed the recapitulation of RTT phenotypes. Despite the early success, genetic and epigenetic instability upon reprogramming and ensuing maintenance of iPSCs raise concerns in using RTT-iPSCs as an accurate in vitro model. In this review, we update the current of iPSC-based RTT modeling, and concerns and challenges. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Background Mesangial cells (MCs) proliferation and accumulation of glomerular matrix proteins such as fibronectin (FN) are the early features of diabetic nephropathy, with MCs known to upregulate matrix protein synthesis in response to high glucose. Recently, it has been found that andrographolide has renoprotective effects on diabetic nephropathy. However, the molecular mechanism underlying these effects remains unclear. Methods Cell viability and proliferation was evaluated by MTT. FN expression was examined by immunofluorescence and immunoblotting. Activator protein-1 (AP-1) activation was assessed by immunoblotting, luciferase reporter and electrophoretic mobility shift assays. Results Andrographolide significantly decreased high glucose-induced cell proliferation and FN expression in MCs. Exposure of MCs to high glucose markedly stimulated the expression of phosphorylated c-jun, whereas the stimulation was inhibited by andrographolide. Plasmid pAP-1-Luc luciferase reporter assay showed that andrographolide blocked high glucose-induced AP-1 transcriptional activity. EMSA assay demonstrated that increased AP-1 binding to a AP-1 binding site at -1029 in the FN gene promoter upon high glucose stimulation, and the binding was disrupted by andrographolide treatment. Conclusions These data indicate that andrographolide suppresses high glucose-induced FN expression by inhibiting AP-1-mediated pathway. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: The internal geological structure of the Northeast German Basin (NEGB) is affected by intense salt diapirism and by the presence of several stratified aquifer complexes of regional relevance. The shallow Quaternary to late Tertiary freshwater aquifer is separated from the underlying Mesozoic saline aquifers by an embedded Tertiary clay enriched aquitard (Rupelian Aquitard). An important feature of this aquitard is that hydraulic connections between the upper and lower aquifers do exist in areas where the Rupelian Aquitard is missing (hydrogeological windows). Three-dimensional thermohaline numerical simulations are carried out to investigate the effects of such hydrogeological windows in the Rupelian Aquitard on the resulting groundwater, temperature and salinity distributions. Numerical results suggest that hydrogeological windows act as preferential domains of hydraulic interconnectivity between the different aquifers at depth, and enable vigorous heat and mass transport which causes a mixing of warm and saline groundwater with cold and less saline groundwater within both aquifers. In areas where the Rupelian Aquitard confines the Mesozoic aquifer, dissolved solutes from major salt structures are transported laterally giving rise to plumes of variable salinity content ranging from few hundreds of meters to several tens of kilometers. Furthermore, destabilizing thermal buoyancy forces may overwhelm counteracting stabilizing salinity induced forces offside of salt domes. This may result in buoyant upward groundwater flow transporting heat and mass to shallower levels within the same Mesozoic Aquifer.

Description: Basic fibroblast growth factor (bFGF) and Notch signaling play critical roles in various cell behaviors. Here, we investigated the influence of bFGF and Notch signaling in alkaline phosphatase (ALP) expression and mineralization process in human periodontal ligament-derived mesenchymal stem cells (PDLSCs) and stem cells isolated from human exfoliated deciduous teeth (SHEDs). PDLSCs and SHEDs were cultured in osteogenic medium supplemented with bFGF or on the immobilized Notch ligands, JAGGED1. The ALP mRNA and protein expression were measured by quantitative reverse transcriptase polymerase chain reaction and enzymatic activity assay, respectively. Mineral deposition was determined using alizarin red S staining. The results showed that the addition of bFGF resulted in the decrease of ALP mRNA expression and enzymatic activity. In addition, the attenuation of mineralization was noted. These phenomenons were blocked by the addition of a fibroblast growth factor receptor inhibitor (SU5402) or a MEK inhibitor (PD98059). Interestingly, bFGF supplementation also decreased the Notch signaling component mRNA levels. Thus, to evaluate effect of Notch signaling in mineralization process, PDLSCs and SHEDs were exposed to JAGGED1 modified surface. The ALP mRNA and protein expression were significantly upregulated and the mineral deposition was markedly increased. These results could be reversed by the addition of a γ-secretase inhibitor. In addition, bFGF could attenuate the Notch-signaling-induced mineralization in both PDLSCs and SHEDs. These results suggest that mineralization was enhanced by Notch signaling but attenuated by bFGF signaling. This knowledge can be further utilized to control PDLSCs and SHEDs mineralization for tissue regeneration purpose. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Cell penetrating peptides (CPPs) are a series of promising carriers for delivering exogenous DNA to living cells. Among them, the combination of the human immunodeficiency virus TAT protein (TAT) with the SV40 large T protein nuclear localization signal (NLS) to form NLS-TAT performs well. In the present study, we took advantage of this new carrier to deliver transforming growth factor-beta 3 (TGFβ3) genes. TGFβ3 was expressed by the pEGFP-N1 vector following transfection of rat precartilaginous stem cells (PSCs), which promoted hTGFβ3 protein self-expression. At 24 h, 48 h, 72 h and 120 h after transfection, the expression levels of hTGFβ3 were found to be elevated as compared with the control. The expression of hTGFβ3 was found to mediate the chondrogenic effect of PSCs. Thus, we determined the expression of the chondrogenesis-related genes type II collagen, Sox 9 and aggrecan in PSCs at 24 h, 48 h, 72 h and 120 h after transfection. We found that their transcription and translation was augmented, which indicated a trend of active chondrogenesis in the PSCs. Our results demonstrated that NLS-TAT had the ability to deliver exogenous DNA into rat PSCs and could be actively expressed. This process successfully promoted PSC chondrogenesis. Additionally, PSC, may represent a new type of stem cells, and thus show great potential in regenerative repair following cartilage injury. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Diabetes mellitus is associated with increased risk of osteopenia and bone fracture that may be related to hyperglycemia. However, the mechanisms accounting for diabetic bone disorder are unclear. Here, we showed that high glucose significantly promoted the production of reactive oxygen species (ROS) in rat primary osteoblasts. Most importantly, we reported for the first time that ROS induced by high glucose increased alkaline phosphatase (ALP) activity, inhibited type I collagen (collagen I) protein level and cell mineralization, as well as gene expression of osteogenic markers including runt-related transcription factor 2 (Runx2), collagen I, osteocalcin, but promoted lipid droplet formation and gene expression of adipogenic markers including peroxisome proliferator-activated receptor gamma (PPARγ), adipocyte fatty acid binding protein (aP2), and adipsin, which were restored by pretreatment with N-acetyl-L-cysteine (NAC), a ROS scavenger. Moreover, high glucose-induced oxidative stress activated PI3K/Akt pathway to inhibited osteogenic differentiation but stimulated adipogenic differentiation. In contrast, NAC and a PI3K inhibitor, LY-294002, reversed the down-regulation of osteogenic markers and the up-regulation of adipogenic markers as well as the activation of Akt under high glucose. These results indicated that oxidative stress played a key role in high glucose-induced increase of adipogenic differentiation which contributed to the inhibition of osteogenic differentiation. This process was mediated by PI3K/Akt pathway in rat primary osteoblasts. Hence suppression of oxidative stress could be a potential therapeutic approach for diabetic osteopenia. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Long continuous seismic data recorded at five broadband seismic stations during 2006 at Campi Flegrei caldera have been analyzed. Introducing a coarse-grained method, we evaluate the time evolution of amplitude and polarization of the seismic noise in the frequency band common to Long-Period events. The series are modulated on tidal time scales: the root-mean square is basically dominated by solar contribution, while the azimuth of the polarization vector shows lunar diurnal and semidiurnal constituents. In addition, we find that in the frequency band common to Long-Period events the azimuths are polarized towards a specific area, suggesting that these persistent oscillations can be induced by the activity of the shallow geothermal reservoir.

Description: We report on the mineralogical assemblages found in the hyper-alkaline springs hosted on Liguria and Oman ophiolites based on exhaustive XRD and SEM analyses. In Liguria, hyper-alkaline springs produce a thin brownish calcite precipitate that covers the bedrock due to the concomitant atmospheric CO 2 uptake and neutralization of the hyper-alkaline waters. No brucite and portlandite minerals are observed. The discharge of alkaline waters in Oman ophiolite forms white-orange precipitates. Calcium carbonate minerals (calcite and/or aragonite) are the most abundant and ubiquitous precipitates and are produced by the same mechanism as in Liguria. This process is observed as a thin surface crust made of rhombohedral calcite. Morphological features of aragonite vary from needle-, bouquet-, dumbbell-, spheroidal-like habitus according to the origin of carbon, the temperature and the ionic composition of the hyper-alkaline springs, and the biochemical and organic compounds. Brucite is observed both at hyper-alkaline springs located at the thrust plane and at the paleo-Moho. The varying mixing proportions between the surface run-off waters and the hyper-alkaline ones control brucite precipitation. The Layered Double Hydroxide minerals occur solely in vicinity of hyper-alkaline springs emerging within the bedded gabbros. Finally, the dominant mineralogical associations we found in Oman (Ca-bearing carbonates and brucite) in a serpentinizing environment driven by the meteoric waters are surprisingly the same as those observed at the Lost City hydrothermal site in a totally marine environment.

Description: A computer program (PBUQ) that uses Monte Carlo simulations to propagate uncertainty through regression equations and the equation for the paleosol carbonate CO 2 paleobarometer is presented. PBUQ includes options for all of the common approaches to determining values for input variables and incorporates several recent advancements relevant to determining values for soil-respired CO 2 concentrations, δ 13 C values of respired CO 2 , δ 13 C values of atmospheric CO 2 and temperatures of soil carbonate formation. PBUQ is intended to improve confidence in paleoatmospheric CO 2 research by helping researchers draw statistically significant conclusions. PBUQ can also be used to attribute and partition error among various sources and thereby advance this technique. Sensitivity analysis indicates that S(z) is the largest source of uncertainty for most paleosols and that uncertainty is minimized for soils in which CO 2 is an evenly balanced mixture between soil-derived and atmospheric components. Evenly balanced mixtures are most likely for paleosols formed in deserts and for weakly-developed paleosols. Development of proxies for soil-respired CO 2 concentrations and δ 13 C values of soil-respired CO 2 specifically for such soils is perhaps the most crucial next step for improving this technique. Currently, calcic paleosols are best used to test the significance of trends and/or differences among time slices in paleoatmospheric CO 2 concentration. Application to quantifying Earth System Sensitivity will require large scale averaging of determinations from individual paleosols and/or reduced uncertainty associated with input variables.

Description: Long-lived detachment faults are now known to be important in tectonic evolution of slow-spreading mid-ocean ridges, and there is increasing evidence that fluid flow plays a critical role in development of detachment systems. Here we document a new manifestation of low-temperature hydrothermal venting associated with the detachment fault that formed Kane Megamullion ~3.3-2.1 m.y. ago in the western rift-valley wall of the Mid-Atlantic Ridge. Hydrothermal effects on the detachment surface include 1) cemented mounds of igneous rock and chalk debris containing hydrothermal Mn oxides and Fe oxyhydroxides, and 2) layered deposits of similar Fe-Mn minerals ± interbedded chalks. Mounds are roughly conical, ~1-10 meters high, and contain primarily basalts with lesser gabbro, serpentinite, and polymict breccia. The layered Fe-Mn-rich sediments are flat-bedded to contorted and locally are buckled into low-relief linear or polygonal ridges. We propose that the mounds formed where hydrothermal fluids discharged through the detachment hanging wall near the active fault trace. Hydrothermal precipitates cemented hanging-wall debris and welded it to the footwall, and this debris persisted as mounds as the footwall was exhumed and surrounding unconsolidated material sloughed off the sloping detachment surface. Some of the layered Fe-Mn-rich deposits may have precipitated from fluids discharging from the hanging-wall vents, but they also precipitated from low-temperature fluids venting from the exposed footwall through overlying chalks. Observed natural disturbance and abnormally thin hydrogenous Fe-Mn crusts on some contorted, hydrothermal Fe-Mn-rich chalks on ~2.7 Ma crust suggest diffuse venting that is geologically recent. Results of this study imply that there are significant fluid pathways through all parts of detachment systems and that low-temperature venting through fractured detachment footwalls may continue for several million years off-axis.

Description: We have previously demonstrated that the ultraviolet (UV) light is effective against a variety of cancer cells in vivo as well as in vitro. In the present report, we imaged the DNA damage repair response of minimal cancer after UVC irradiation. DNA-damage repair response to UV irradiation was imaged on tumors growing in 3-D culture and in superficial tumors grown in vivo . UV-induced DNA damage repair was imaged with GFP fused to the DNA damage response (DDR)-related chromatin-binding protein 53BP1 in MiaPaCa-2 human pancreatic cancer cells. Three-dimensional culture and in vivo imaging enabled 53BP1-GFP nuclear foci to be observed within one hour after UVC irradiation, indicating the onset of DNA damage repair response. A clonogenic assay showed that UVC inhibited MiaPaCa-2 cell proliferation in a dose-dependent manner, while UVA and UVB showed little effect on cell proliferation. Induction of UV-induced 53BP1-GFP focus formation was limited up to a depth of 40 µm in 3D-culture of MiaPaCa-2 cells. The MiaPaCa-2 cells irradiated by UVC light in a skin-flap mouse model had a significant decrease of tumor growth compared to untreated controls. Our results also demonstrate that 53BP1-GFP is an imageable marker to UV-induced DNA damage repair response of minimal cancer and that UVC is a useful tool for the treatment of residual cancer since UVC can kill superficial cancer cells without damage to deep tissue. In this study, using 53BP1-GFP as a marker of early response to DNA damage, we investigated the efficacy and limitation of UV light as a therapeutic modality for MRC. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Endochondral ossification is essential for new bone formation and remodeling during the distraction stage. Endochondral ossification is attributed to chondrocyte maturation, which is induced by various factors, such as the cellular environment, gene transcription, and growth factor expression. Cartilage oligomeric matrix protein (COMP)-angiopoietin 1 (Ang1) is more soluble, stable, and potent than endogenous Ang1, and COMP-Ang1 treatment has osteogenic and angiogenic effects in an in vivo model of bone fracture healing. Although the osteogenic effects of COMP-Ang1 have been demonstrated, the precise mechanism by which COMP-Ang1 induces chondrocyte maturation and triggers endochondral ossification is not understood. Here, we investigated the possible mechanism by which COMP-Ang1 induces chondrocyte maturation. First, using a WST assay, we found that COMP-Ang1 is nontoxic in rat chondrocytes. Then, we isolated total RNA from COMP-Ang1–treated rat chondrocytes, and analyzed the decrease in chondrogenic gene expression and the increase in osteogenic gene expression using real-time RT-PCR. Gene and protein expression of heme oxygenase-1 (HO-1), which maintains chondrocytes in an immature stage, decreased in a dose-dependent manner upon COMP-Ang1 treatment. To clarify the relationship between HO-1 and COMP-Ang1 in chondrocyte maturation, we used cobalt protoporphyrin IX (CoPP IX), an HO-1 inducer, and tin protoporphyrin IX (SnPP-IX), an HO-1 inhibitor. Treatment with various combinations of CoPP IX, SnPP IX, and COMP-Ang1 confirmed that COMP-Ang1 accelerates chondrocyte maturation by reducing HO-1. In conclusion, our results suggest that COMP-Ang1 accelerates chondrocyte maturation by interacting with HO-1. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: P and S relative arrival time residuals from teleseismic earthquakes recorded on over 60 temporary AfricaArray broadband seismic stations deployed in Uganda, Tanzania and Zambia between 2007 and 2011 have been inverted, together with relative arrival time residuals from earthquakes recorded by previous deployments, for a tomographic image of mantle wave speed variations extending to a depth of 1200 km beneath eastern Africa. The image shows a low wave speed anomaly (LWA) well developed at shallow depths (100-200 km) beneath the Eastern and Western branches of the Cenozoic East African rift system and northwestern Zambia, and a fast wave speed anomaly at depths ≤ 350 km beneath the central and northern parts of the East African Plateau and the eastern and central parts of Zambia. At depths ≥350 km the LWA is most prominent under the central and southern parts of the East African Plateau and dips to the southwest beneath northern Zambia, extending to a depth of at least 900 km. The amplitude of the LWA is consistent with a ~150-300 K thermal perturbation, and its depth extent indicates that the African superplume, originally identified as a lower mantle anomaly, is likely a whole mantle structure. A superplume extending from the core-mantle boundary to the surface implies an origin for the Cenozoic extension, volcanism and plateau uplift in eastern Africa rooted in the dynamics of the lower mantle.

Description: In the Garibaldi Belt, the northern segment of the Cascade arc, basalts at Bridge River Cones, Salal Glacier, and Mt. Meager (BSM volcanic centers) are alkalic, atypical for an arc setting. Subduction signatures are negligible or absent from primitive alkalic basalts from Salal Glacier and Bridge River, while altered oceanic crust may have contributed a minimal amount of fluid at Mt. Meager. More evolved BSM basalts display trace element signatures considered typical of arc lavas, but this is a consequence of deep crustal assimilation rather than primary input from the subducted slab. Primary BSM basalts represent 3-8% melts that segregated from enriched garnet lherzolite at significantly higher temperatures and pressures (70-105 km) than calc-alkaline Cascade arc basalts. The BSM mantle source is significantly more incompatible element-enriched than the depleted mantle tapped by calc-alkaline Cascade arc basalts. The BSM basalts are also isotopically distinct from calc-alkaline Cascade arc basalts, more similar to MORB and intraplate basalts of the NE Pacific and NW North America. The relatively deep, hot, and geochemically distinct mantle source for BSM basalts is consistent with upwelling asthenosphere. The BSM volcanic centers are close to the projected trace of the Nootka fault, which forms the boundary between the subducting Juan de Fuca plate and the near-stagnant Explorer plate. A gap or attenuated zone between the plates may promote upwelling of enriched asthenosphere that undergoes low-degree decompression melting to generate alkalic basalts that are essentially free of slab input yet occur in an arc setting.

Description: The temporal evolution of the mantle melting processes in the Asal Rift is evaluated from the chemical composition of 56 new lava flows sampled along 10 km of the rift axis and 9 km off-axis (i.e., erupted within the last 620 ky). Petrological and primary geochemical results show that most of the samples of the inner floor of the Asal Rift are affected by plagioclase accumulation. Trace element ratios and major element compositions corrected for mineral accumulation and crystallization show a symmetric pattern relative to the rift axis and preserved a clear signal of mantle melting depth variations. While FeO, Fe 8.0 , Zr/Y and (Dy/Yb) N decrease from the rift shoulders to the rift axis, SiO 2 , Na/Ti, Lu/Hf increase and Na 2 O and Na 8.0 are constant across the rift. These variations are qualitatively consistent with shallow melting beneath the rift axis and deeper melting for off-axis lava flows. Na 8.0 and Fe 8.0 contents show that beneath the rift axis, melting paths are shallow, from 81 ± 4 km to 43 ± 5 km. These melting paths are consistent with adiabatic melting in normal-temperature fertile asthenosphere, beneath an extensively thinned mantle lithosphere. On the contrary, melting on the rift shoulders (from 107 ± 7 km to 67 ± 8 km) occurred beneath thicker lithosphere, requiring a mantle solidus temperature 100 ± 40 °C hotter. In this geodynamic environment, the calculated rate of lithospheric thinning appears to be 4.0 ± 2.0 cm yr -1 , a value close to the mean spreading rate (2.9 ± 0.2 cm yr -1 ) over the last 620 ky.

Description: One of the most frequent chromosomal translocation found in patients with acute myeloid leukemia (AML) is the t(8;21). This translocation involves the RUNX1 and ETO genes. The breakpoints regions for t(8;21) are located at intron 5 and intron 1 of the RUNX1 and ETO gene respectively. To date, no homologous sequences have been found in these regions to explain their recombination. The breakpoint regions of RUNX1 gen are characterized by the presence of DNasaI hypersensitive sites and topoisomerase II cleavage sites, but no information exists about complementary regions of ETO gene. Here we report analysis of chromatin structure of ETO breakpoint regions. Chromatin immunoprecipitation (ChIP) were performed with antibodies specific to acetylated histone H3, H4 and total histone H1. Nucleosomal distribution at the ETO locus was evaluated by determining total levels of histone H3. Our data show that in myeloid cells, the breakpoint regions at the ETO gene are enriched in hyperacetylated histone H3 compared to a control region of similar size where no translocations have been described. Moreover, acetylated H4 associates with both the whole ETO breakpoint regions as well as the control intron. Interestingly, we observed no H1 association either at the breakpoint regions or the control region of the ETO gene. Our data indicate that a common chromatin structure enriched in acetylated histones is present in breakpoint regions involved in formation of (8;21) leukemic translocation. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Global Positioning System (GPS) and Differential Interferometric Synthetic Aperture Radar (DInSAR) data, collected from July 2007 to July 2008 on Mt. Etna, are analysed to define the dynamics preceding and accompanying the onset of the eruption on 13 May 2008. Short and long-term comparisons have been made on both GPS and radar data, covering similar time windows. Thanks to the availability of three GPS surveys the year before the eruption onset, an increase in the seawards movement of the NE flank of the volcano has been detected in the few months before the dike intrusion. The GPS ground deformation pattern also shows a slight inflation centred on the western side of the volcano in the pre-eruptive long-term comparison (from July 2007 to May 2008). The GPS has been integrated with DInSAR data by the SISTEM approach, to take advantage of the different methodologies and provide high spatial sampling of the 3D ground displacement pattern. We inverted the SISTEM results in order to model the pressure source causing the observed pre-eruptive inflation. The subsequent emplacement of the eruptive dike was imaged by two GPS surveys carried out on a dense network over the uppermost part of the volcano on May 6 and 13, i.e. a few days before and a few hours after the beginning of the eruption. We inverted this comparison to define the position, geometry and kinematics of the dike. The dike intrusion was also imaged by DInSAR data with temporal baselines of 2-3 months, which confirm strong displacements localized on the summit area, rapidly decreasing towards the middle flanks of the volcano, as detected by very short-term GPS data; furthermore, the comparison between DInSAR and GPS data highlighted the presence of a depressurizing source localized beneath the upper south-western area, acting just after the dike intrusion. Finally, the long period (one year) GPS and DInSAR data were integrated by SISTEM in order to finely depict the 3D ground deformation pattern with the highest spatial resolution. The long-period data allowed the complex kinematics of the volcano to be finely imaged and highlighting the interaction between flank dynamics and magma injection.

Description: PU.1 is an Ets family transcription factor involved in the myelo-lymphoid differentiation. We have previously demonstrated that PU.1 is also expressed in the adipocyte lineage. However, the expression levels of PU.1 mRNA and protein in preadipocytes do not match the levels in mature adipocytes. PU.1 mRNA level is higher in preadipocytes, whereas its protein is expressed in the adipocytes but not in the preadipocytes. The underlying mechanism remains elusive. Here, we find that miR-155 knockdown or overexpression has no effect on the levels of PU.1 mRNA and protein in preadipocytes or adipocytes. MiR-155 regulates adipogenesis not through PU.1, but via C/EBPβ which is another target of miR-155. We also checked the expression levels of PU.1 mRNA and antisense long non-coding RNA (AS lncRNA). Interestingly, compared with the level of PU.1 mRNA, the level of PU1 AS lncRNA is much higher in preadipocytes, whereas it is opposite in the adipocytes. We further discover that PU.1 AS lncRNA binds to its mRNA forming an mRNA/AS lncRNA compound. The knockdown of PU.1 AS by siRNA inhibits adipogenesis and promotes PU.1 protein expression in both preadipocytes and adipocytes. Furthermore, the repression of PU.1 AS decreases the expression and secretion of adiponectin. We also find that the effect of retroviral-mediated PU.1 AS knockdown on adipogenesis is consistent with that of PU.1 AS knockdown by siRNA. Taken together, our results suggest that PU.1 AS lncRNA promotes adipogenesis through preventing PU.1 mRNA translation via binding to PU.1 mRNA to form mRNA/AS lncRNA duplex in preadipocytes. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: A regional survey of alkaline springs in Oman and Ligurian ophiolites shows that the alkaline water compositions significantly vary from one ophiolite to the other and within the same ophiolite. The first order correlation between the Na (and K) and Cl concentrations points to fluid compositions only partly due to evaporation. The scatter around the evaporation line implies that Na and Cl may not be conservative during the alteration of the ultramafic rocks. Mg is almost entirely depleted at pH 〉 10.5 as a result of serpentine formation within the ultramafic body and of brucite (and minor hydrotalcite) precipitation at the springs. Ca accumulates in the high pH fluids and is consumed by Ca-carbonate formation at the springs, by mixing with river waters or by the CO2 supply from the atmosphere. Thermodynamic calculations show that brucite saturation is reached at pH values around 10.5 which triggers major changes in the water composition. The waters evolve from a quartz-saturated low pH continental environment to a brucite-dominated high pH serpentinizing system at low temperature. The highest water salinities are found in springs located along the basal thrust plane of the ophiolite. The highest Al concentrations are found in some springs located on the crustal side of the mantle/crust boundary. This poses the question of the hydrologic pathways and of the role of the mineralogical composition of the altered formations.

Description: [1]  This study examines the effect of gas hydrate formation on seismic wave velocities of fine-grained sediments. Synthesis of gas hydrates in fine-grained sediments has proved to be challenging, and how hydrate formation would affect the seismic wave velocities and stiffness of clay-rich sediments has not yet been fully understood. In this study, CO 2 hydrate was synthesized in remolded and partially water-saturated clayey silt sediments that were originally cored from a hydrate occurrence region in the Ulleung Basin, East Sea, offshore Korea. After achieving excess water conditions, compressional wave and shear wave velocities were measured for different hydrate saturations and under different vertical effective stresses. The results reveal that the compressional wave velocity V P and shear wave velocity V S increase and the stress-dependency of V P and V S decreases as the hydrate saturation S H increases from 0% to ~60%. In particular, the V S ‒S H trend lies between the grain-cementing model and the load-bearing model, suggesting that gas hydrate formation in clayey silt sediments causes weak cementation from a hydrate saturation less than ~28%. The weak cementation in fine-grained sediments can be explained by the breakage of hydrate bonds that are cementing grains during sediment compression and/or the innate weakness in bonding between hydrate crystals and fine mineral grains owing to the presence of unfrozen water films on clay mineral surfaces. In addition, it is found that at low S H the cementation effect on V P is masked by the high stiffness of pore-filling phases, but it becomes pronounced at S H greater than 47%.

Description: [1]  Mountain rivers play a key role in the delivery of particulate organic carbon (POC) to large river systems and the ocean. Due to the extent of its drainage area and runoff, the Amazon River is one of Earth's most important biogeochemical systems. However the source of POC eroded from the humid region of the Eastern Andes and the input of fossil POC from sedimentary rocks (POC fossil ) remains poorly constrained. Here we collected suspended sediments from the Kosñipata River during flood events to better characterise Andean POC, measuring the nitrogen to organic carbon ratio (N/C), stable carbon isotopes ( δ 13 C org ) and radiocarbon ( Δ 14 C org ). Δ 14 C org values ranged from -711‰ to -15‰ and significant linear trends between Δ 14 C org, N/C and δ 13 C org suggested that this reflects the mixing of POC fossil with very young organic matter ( Δ 14 C org  ~ 50‰) from the terrestrial biosphere (POC non-fossil ). Using N/C and Δ 14 C org in an end member mixing analysis, we quantify the fraction of POC fossil (to within 0.1) and find that it contributes a constant proportion of the suspended sediment mass (0.37 ± 0.03%) and up to 80% of total POC. In contrast, the relative contribution of POC non-fossil was variable, being most important during the rising limb and peak discharges of flood-events. The new data shed light on published measurements of ‘old’ POC (low Δ 14 C org ) in Andean-fed tributaries of the Amazon River, with their Δ 14 C org and δ 13 C org values consistent with variable addition of POC fossil . The findings suggest a greater persistence of Andean POC in the lowland Amazon than previously recognised.

Description: [1]  The D’ Entrecasteaux Island (DEI) gneiss domes are fault-bounded domes with ~2.5 km of relief exposing ultrahigh-pressure (UHP) and high-pressure (HP) metamorphic gneisses and migmatites exhumed in an Oligocene-Miocene arc-continent collision and subduction zone subject to Late Miocene to Recent continental extension. Multi-channel seismic (MCS) reflection data and well data show the Trobriand basin formed as a forearc basin caused by southward Miocene subduction at the Trobriand trench. Subduction slowed at ~8 Ma as the margin transitioned to an extensional tectonic environment. Since then, the Trobriand basin has subsided 1–2.5 km as a broad sag basin with few normal faults deforming the basin fill. South of the DEI, the Good enough rift basin developed after extension began (~8 Ma) as the hanging-wall of the north-dipping Owen-Stanley normal fault that bounds the basin's southern margin. The lack of upper crustal extension accompanying subsidence in the Trobriand and Good enough basins suggests depth-dependent lithospheric extension since 8 Ma has accompanied uplift of the DEI gneiss domes. Structural reconstructions of seismic profiles show 2.3 to 13.4 km of basin extension in the upper crust, while syn-rift basin subsidence values indicate at least 20.7 to 23.6 km of extension occurred in the entire crust since ~8 Ma. Results indicating thinning is preferentially accommodated in the lower crust surrounding the DEI are used to constrain a schematic model of uplift of the DEI domes involving vertical exhumation of buoyant, post-orogenic lower crust, far-field extension from slab rollback, and an inverted two-layer crustal density structure.

Description: [1]  The relationship between lithospheric evolution of eastern Eurasia and subduction of the Pacific plate has long been debated. However, the timing and implications of subduction on the tectonics of eastern China are not well constrained. Here, we present new zircon U-Pb ages and Hf isotopes, elemental and Sr-Nd-Pb isotopic data on Cretaceous volcanic rocks from the Ningwu basin, eastern China to further address this issue. Our age data reveal rapid eruption of the volcanic rocks within a short duration from 133 to 130 Ma. The rocks, mostly characterized by shoshonitic and high-K calc-alkaline signatures, display light rare earth element and Pb enrichment, Nb, Ta and Ti depletion, highly radiogenic Sr-Pb isotopic ratios and variable ε Hf (t) (+1.8 to −10), suggesting derivation from an enriched lithospheric mantle metasomatized by marine sediments. The early lavas (133.3 ± 1.1 Ma) show stronger subducted-related signatures than the late lavas (130.1 ± 1.0 Ma), which we interpret to reflect consumption of a significant volume of fusible subducted components in the early melting phase. The large ε Hf (t) variation of late lavas suggests greater involvement of asthenospheric melts and lower crust in their petrogenesis. The youngest age (130 Ma) appears to coincide with an inferred change in the direction of Pacific-Eurasia convergence, manifested as a change from extension to transpression in eastern China. The narrow window of eruption may signify a rapid change of the tectonic regime in the Early Cretaceous.

Description: ABSTRACT Obesity is now a major health problem due to its rapidly increasing incidence worldwide and severe consequences.Among many conditions associated with obesity aresome cancers including melanoma.Both genetic defects and environmental risk factors are involved in the carcinogenesis of melanoma. Activation of multiple signal pathways such as the PI3K/Akt and MAPK pathways are necessary for the initiation of melanoma. Activation of the MAPK pathway as a result of activating mutations in BRAF is commonly seen in melanoma though it alone is not sufficient to cause malignant transformation of melanocytes. Obesity can result in the activation of many signal pathways including PI3K/Akt, MAPK and STAT3. The activation of these pathways may have a synergistic effect with the genetic defects thereby increasing the incidence of melanoma. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Mid-ocean ridges magmatism is by and large considered to be mostly dry. Nevertheless, numerous works in the last decade have shown that a hydrous component is likely to be involved in ocean ridges magmas genesis and / or evolution. The petrology and geochemistry of peculiar coarse grained gabbros sampled in the upper part of the gabbroic sequence from the Northern Oman ophiolite (Wadi Rajmi) provide information on the origin and fate of hydrous melts in fast spreading oceanic settings. Uncommon crystallization sequences for oceanic settings (clinopyroxene crystallizing before plagioclase), extreme mineral compositions (plagioclase An% up to 99, and clinopyroxene Mg# up to 96), and the presence of magmatic amphibole, imply the presence of a high water activity during crystallization. Various petrological and geochemical constraints point to hydration resulting from the recycling of hydrothermal fluids. This recycling event may have occurred at the top of the axial magma chamber where assimilation of anatectic hydrous melts is recurrent along mid-ocean ridges, or close to segments ends where fresh magma intrudes previously hydrothermally altered crust. In ophiolitic settings, hydration and remelting of hydrothermally altered rocks producing hydrous melts may also occur during the obduction process. Although dry magmatism dominates oceanic magmatism, the dynamic behavior of fast spreading ocean ridge magma chambers has the potential to produce the observed hydrous melts (either in ophiolites or at spreading centers), which are thus part of the general mid-ocean ridges lineage.

Description: The Seismic Array HiKurangi Experiment (SAHKE) investigated the structure of the forearc and subduction plate boundary beneath the southern North Island along a 350 km transect. Tomographic inversion of first-arrival travel times was used to derive a 15-20 km deep P-wave image of the crust. The refracted phases and migrated reflection events image subducting slab geometry and crustal structure. In the west, Australian Plate Moho depth decreases westward across the Taranaki Fault system from 35 to ~28-30 km. In the east, subducted Pacific Plate oceanic crust is recognised to have a positive velocity gradient, but becomes less distinct beneath the Tararua Ranges, where the interface increases in dip at about 15 km depth from 〈5° to 〉15°. This bend in the subducted plate is associated with vertical clusters in seismicity, splay fault branching, and low-velocity high-attenuation material that we interpret to be an underplated subduction sedimentary channel. We infer that a step down in the decollément transfers slip on the plate interface at the top of a subduction channel to the oceanic crust and drives local uplift of the Tararua Ranges. Reflections from the Wairarapa Fault show that it is listric and soles into the top of underplated sediments, which in turn abut the Moho of the over-riding plate at ~32 km depth, near the downdip end of the strongly locked zone. The change in dip of the Hikurangi subduction interface is spatially correlated with the transition from geodetically determined locked to unlocked areas of the plate interface.

Description: A normal fertilized human zygote contains two pronuclei, but zygotes may also display one, three, or even more pronuclei resulting from irregular insemination or meiotic division. Today diploid and triploid human embryonic stem cell (hESC) lines have been derived from tripronuclear (3PN) triploid zygotes, and an in-vitro fertilization (IVF) baby was born from a rescued diploid zygote by removing the extra male pronucleus of the 3PN zygote. However, whether hESCs can be derived from a rescued 3PN zygote is still unknown. Here, by microsurgical pronuclear removal, we restored 61 diploid zygotes from 3PN zygotes donated by 35 couples, and 11 blastocysts developed with a blastocyst rate of 18.0%, which seems higher than that of nonrescued 3PN zygotes according to previous reports. After the whole zona pellucida free embryos were plated onto feeder cells to grow and passage, 2 hESC lines (CCRM-hESC-22 and CCRM-hESC-23) were generated and both carried normal karyotype (46, XY). The hESC lines were then characterized by morphology, expansion in vitro , and expression of specific markers of alkaline phosphatase, OCT4, SSEA4, TRA-1-60 and TRA-1-81. Furthermore, the pluripotency of these 2 hESC lines was confirmed by in vitro embryoid body formation and in vivo teratoma production. Our study indicates that depronucleared 3PN zygotes can improve the blastocysts formation rate, and normal hESC lines can be derived from those corrected 2PN embryos. Based on their multi-directional differentiation potential in vitro , the established hESC lines could be applied to the developmental risk assessment for IVF babies born from restored zygotes. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: [1]  The origin of crustal-scale silicic magmatism remains a matter of debate, and notable uncertainty exists concerning the physical mechanisms that drive ascent and emplacement of felsic magmas in upper crustal regions. A 2D numerical model demonstrates that injection of mantle-derived mafic magma into a partially molten hot zone in the lower crust can drive felsic magma ascent and intrusion into upper crustal levels. The injection of mafic magma induces over pressure in the reservoir, which increases crustal stresses and triggers development of brittle/plastic shear zones, and can drive significant surface uplift. The emerging topography causes a non-uniform over pressure distribution in the reservoir and can trigger felsic magma ascent along crustal shear zones. Based on systematic numerical experiments we investigate the influence of crustal strength and injection rate. The initial upper crustal strength controls the degree of crustal faulting and surface uplift and, therefore, whether felsic magma ascent can be initiated or not. The final upper crustal strength influences the depth and final style of felsic intrusion. The injection rate of mafic magma determines the time scale of overpressure growth and surface uplift stage. In contrast, the duration of the subsequent felsic ascent and intrusion emplacement stages remains nearly constant. Our results imply that mafic underplating and intrusion into the lower crust may not only be a prime control for the generation of felsic magmas in the lower crust, but may also be an important physical driving mechanism for felsic magma ascent and intrusion into upper crustal levels.

Description: Transplantation of functional insulin-producing cells (IPCs) provides a novel mode for insulin replacement, but is often accompanied by many undesirable side effects. Our previous studies suggested that IPCs could not mimic the physiological regulation of insulin secretion performed by pancreatic beta cells. To obtain a better method through which to acquire more similar IPCs, we compared the difference between IPCs of the GLP-1 group and IPCs of the non-GLP-1 group in the morphological features in cellular level and physiological function. The levels of insulin secretion were measured by ELISA. The insulin and Glucagon-like peptide-1 (GLP-1) mRNA gene expression was determined by real-time quantitative PCR. The morphological features were detected by atomic force microscopy (AFM)and laser confocal scanning microscopy (LCSM). Intracellular Ca 2+ levels and Glucagon-like peptide-1 Receptor (GLP-1R) levels were determined by flow cytometer (FCM).We found that IPCs of the GLP-1group had bigger membrane particle size and average roughness (Ra) than IPCs of the non-GLP-1 group but still smaller than normal human pancreatic beta cells. The physiology function of IPCs of the GLP-1 group were much closer to normal human pancreatic beta cells than IPCs of the non-GLP-1 group. GLP-1 could improve the similarity of insulin-producing cells from human adipose tissue-derived mesenchymal stem cells and pancreatic beta cells in cellular ultrastructure and function. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: ABSTRACT Glutathione has traditionally been considered as an antioxidant that protects cells against oxidative stress. Hence, the loss of reduced glutathione and formation of glutathione disulfide is considered a classical parameter of oxidative stress that is increased in diseases. Recent studies have emerged that demonstrate that glutathione plays a more direct role in biological and pathophysiological processes through covalent modification to reactive cysteines within proteins, a process known as S-glutathionylation. The formation of an S-glutathionylated moiety within the protein can lead to structural and functional modifications. Activation, inactivation, loss of function, and gain of function have all been attributed to S-glutathionylation. In pathophysiological settings, S-glutathionylation is tightly regulated. This perspective offers a concise overview of the emerging field of protein thiol redox modifications. We will also cover newly developed methodology to detect S-glutathionylation in situ , which will enable further discovery into the role of S-glutathionylation in biology and disease. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Paget's disease of bone (PDB) is a chronic focal skeletal disorder characterized by excessive bone resorption followed by disorganized new bone formation. Measles virus nucleocapsid (MVNP) is implicated in pathogenesis of PDB. RANK ligand (RANKL), a critical osteoclastogenic factor expressed on bone marrow stromal/preosteoblast cells is upregulated in PDB. We recently demonstrated that fibroblast growth factor-2 (FGF-2) which induces RANKL expression is elevated in PDB. In this study, we hypothesized that FGF-2 modulates suppressors of cytokine signaling (SOCS) to induce RANKL expression in PDB. We identified increased levels of SOCS-1/3 mRNA expression in bone marrow mononuclear cells derived from patients with PDB compared to normal subjects. Interestingly, conditioned media obtained from MVNP transduced osteoclast progenitor cells significantly increased SOCS-1/3 mRNA expression in stromal/preosteoblast cells. We next examined if SOCS participates in FGF-2 signaling to modulate RANKL gene expression. We showed that FGF-2 stimulation significantly increased SOCS-1/3 expression in human bone marrow stromal/preosteoblast cells. In addition, co-expression of SOCS-1/3 with hRANKL gene promoter-luciferase reporter plasmid in marrow stromal cells demonstrated a significant increase in promoter activity without FGF-2 stimulation. Furthermore, siRNA inhibition of STAT-1 suppresses FGF-2 increased SOCS-1/3 expression in these cells. Thus, our results suggest that SOCS participates in FGF-2 modulation of RANKL expression in PDB. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: The molecular mechanisms linking A β to the onset of neurotoxicity are still largely unknown, but several lines of evidence point to reactive oxygen species, which are produced even under the effect of nanomolar concentrations of soluble A β -oligomers. The consequent oxidative stress is considered as the mediator of a cascade of degenerative events in many neurological disorders. Epidemiological studies indicate that dietary habits and antioxidants from diet can influence the incidence of neurodegenerative disorders such as Alzheimer's and Parkinson's diseases. In the recent years, a number of reviews have reported on neuroprotective effects of polyphenols in cell and animal models. However, the majority of these studies have focused only on the anti-oxidant properties of these compounds and less on the mechanism/s of action at cellular level. In this work we investigated the effect of cocoa polyphenolic extract on a human AD in vitro model. The results obtained, other than confirming the anti-oxidant properties of cocoa, demonstrate that cocoa polyphenols triggers neuroprotection by activating BDNF survival pathway, both on Aß plaque treated cells and on Aß oligomers treated cells, resulting in the counteraction of neurite dystrophy. On the light of the results obtained the use of cocoa powder as preventive agent for neurodegeneration is further supported. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Micro RNA (miRNA) is a small non-coding posttranscriptional RNA regulator that is involved in a variety of biological events. In order to specify the role of miRNAs in cartilage metabolism, we comparatively analyzed the expression profile of known miRNAs in chicken sternum chondrocytes representing early and late differentiation stages. Interestingly, none of the miRNAs displaying strong expression levels showed remarkable changes along with differentiation, suggesting their roles in maintaining the homeostasis rather than cytodifferentiation of chondrocytes. Among these miRNAs, miR-181a, which is known to play critical roles in a number of tissues, was selected and was further characterized. Human microarray analysis revealed remarkably stronger expression of miR-181a in human HCS-2/8 cells, which strongly maintained a chondrocytic phenotype, than in HeLa cells, indicating its significant role in chondrocytes. Indeed, subsequent investigation indicated that miR-181a repressed the expression of 2 genes involved in cartilage development. One was CCN family member 1 (CCN1), which promotes chondrogenesis; and the other, the gene encoding the core protein of aggrecan, a major cartilaginous proteoglycan, aggrecan. Based on these findings, negative feedback system via miR-181a to conserve the integrity of the cartilaginous phenotype may be proposed. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: ABSTRACT Phosphoinositide 3-kinase proteins are composed by a catalytic p110 subunit and a regulatory p85 subunit. There are three classes of PI3K, named class I, II and III, on the bases of the protein domain constituting and determining their specificity. The first one is the best characterized and includes a number of key elements for the integration of different cellular signals. Regulatory p85 subunit shares with the catalytic p110 subunit, a N-terminal SH3 domain showing homology with the protein domain Rho-GTP-ase. After cell stimulation, all class I PI3Ks are recruited to the inner face of the plasma membrane, where they generate phosphatidylinositol-3,4,5-trisphosphate by direct phosphorylation of phosphatidylinositol-4,5-bisphosphate. All pathways trigger the control of different phenomena such as cell growth, proliferation, apoptosis, adhesion and migration through various downstream effectors. We have previously provided direct evidences that a Serine in position 83, adjacent to the N-terminal SH3 domain of regulatory subunit of PI3K, is a substrate of PKA. The aim of this work is to confirm the role of p85αPI3KSer83 in regulating cell proliferation, migration and invasion in prostate cancer cells LNCaP. To this purpose cells were transfected with mutant forms of p85, where Serine was replaced by Alanine, where phosphorylation is prevented, or Aspartic Acid, to mimic the phosphorylated residue. The findings of this study suggest that identifying a peptide mimicking the sequence adjacent to Ser 83 may be used to produce antibodies against this residue that can be proposed as usefool tool for prognosis by correlating phosphorylation at Ser83 with tumor stage. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: The Paleocene-Eocene Thermal Maximum (PETM) is marked by a prominent negative carbon isotope excursion (CIE) of 3-5‰ that has a characteristic rapid onset, stable body, and recovery to near pre-CIE isotopic composition. Although the CIE is the major criterion for global correlation of the Paleocene-Eocene boundary, spatial variations in the position and shape of the CIE have not been systematically evaluated. We measured carbon isotope ratios of bulk organic matter (δ 13 C org ) and pedogenic carbonate (δ 13 C carb ) at six PETM sections across a 16 km transect in the SE Bighorn Basin, Wyoming. Bed tracing and high-resolution floral and faunal biostratigraphy allowed correlation of the sections independent of chemostratigraphy. The onset of the CIE in bulk organic matter at all six sections occurs within a single laterally extensive geosol. The magnitude of the CIE varies from 2.1-3.8‰. The absolute and relative stratigraphic thickness of the body of the CIE in bulk organic matter varies significantly across the field area and under-represents the thickness of the PETM body by 30%-80%. The variations cannot be explained by basinal position and instead suggest that δ 13 C org values were influenced by local factors such as reworking of older carbon. The stratigraphic thickness and shape of the CIE have been used to correlate sections, estimate timing of biotic and climatic changes relative to the presumed carbon isotope composition of the atmosphere, and calculate rates of environmental and biotic change. Localized controls on δ 13 C org values place these inferences in question by influencing the apparent shape and duration of the CIE.

Description: Estimates of the relative motion between the Hawaiian and Louisville hotspots have consequences for understanding the role and character of deep Pacific-mantle return flow. The relative motion between these primary hotspots can be inferred by comparing the age records for their seamount trails. We report 40 Ar/ 39 Ar ages for 18 lavas from 10 seamounts along the Hawaiian-Emperor Seamount Chain (HESC), showing that volcanism started in the sharp portion of the Hawaiian-Emperor Bend (HEB) at ≥47.5 Ma and continued for ≥5 Myr. The slope of the along-track distance from the currently active Hawaiian hotspot plotted versus age is constant (57±2 km/Myr) between ~57 and 25 Ma in the central ~1900 km of the seamount chain, including the HEB. This model predicts an age for the oldest Emperor Seamounts that matches published ages, implying that a linear age-distance relationship might extend back to at least 82 Ma. In contrast, Hawaiian age progression was much faster since at least ~15 Ma and possibly as early as ~27 Ma. Linear age-distance relations for the Hawaii-Emperor and Louisville seamount chains predict ~300 km overall hotspot relative motion between 80 and 47.5 Ma, in broad agreement with numerical models of plumes in a convecting mantle, and paleomagnetic data We show that a change in hotspot relative motion may also have occurred between ~55 Ma and ~50 Ma. We interpret this change in hotspot motion as evidence that the HEB reflects a combination of hotspot and plate motion changes driven by the same plate/mantle reorganization.

Description: ABSTRACT Axial Seamount, an active submarine volcano on the Juan de Fuca Ridge at 46°N, 130°W, erupted in January 1998 along 11 km of its upper south rift zone. We use ship-based multibeam sonar, high-resolution (1-m) bathymetry, sidescan sonar imagery, and submersible dive observations to map four separate 1998 lava flows that were fed from eleven eruptive fissures. These new mapping results give an eruption volume of 31 x 10 6 m 3 , 70% of which was in the northern-most flow, 23% in the southern-most flow, and 7% in two smaller flows in between. We introduce the concept of map-scale submarine lava flow morphology (observed at a scale of 100s of meters, as revealed by the high-resolution bathymetry), and an interpretive model in which two map-scale morphologies are produced by high effusion-rate eruptions: “inflated lobate flows” are formed near eruptive vents, and where they drain downslope more than 0.5-1.0 km, they transition to “inflated pillow flows.” These two morphologies are observed on the 1998 lava flows at Axial. A third map-scale flow morphology that was not produced during this eruption, “pillow mounds,” is formed by low effusion-rate eruptions in which pillow lava piles up directly over the eruptive vents. Axial Seamount erupted again in April 2011 and there are remarkable similarities between the 1998 and 2011 eruptions, particularly the locations of eruptive vents and lava flow morphologies. Because the 2011 eruption reused most of the same eruptive fissures, 58% of the area of the 1998 lava flows is now covered by 2011 lava.

Description: A global map of surface heat flow is presented on a 2° by 2° equal area grid. It is based on a global heat flow data set of over 38,000 measurements. The map consists of three components. Firstly, in regions of young ocean crust (〈67.7Ma) the model estimate uses a half-space conduction model based on the age of the oceanic crust, since it is well known that raw data measurements are frequently influenced by significant hydrothermal circulation. Secondly in other regions of data coverage the estimate is based on data measurements. At the map resolution these two categories (young ocean, data covered) cover 65% of Earth's surface. Thirdly, for all other regions the estimate is based on the assumption that there is a correlation between heat-flow and geology. This assumption is assessed and the correlation is found to provide a minor improvement over assuming that heat flow would be represented by the global average. The map is made available digitally.

Description: We present 36 new 40 Ar- 39 Ar incremental heating age determinations from the Caribbean Large Igneous Province (CLIP) providing evidence for extended periods of volcanic activity and suggest a new tectonomagmatic model for the province's timing and construction. These new 40 Ar- 39 Ar ages for the Curaçao Lava Formation (CLF) and Haiti's Dumisseau Formation show evidence for active CLIP volcanism from 94 to 63 Ma. No clear changes in geochemical character are evident over this period. The CLF has trace element signatures (e.g., Zr/Nb = 10-20) and flat rare earth element (REE) trends consistent with plume volcanism. The Dumisseau Formation also has plume-like geochemistry and steeper REE trends similar to ocean island basalts. Volcanism in the Dumisseau Formation appears to have largely ceased by 83 Ma while at Curaçao it continued until 63 Ma. A rapidly surfacing and melting plume head alone does not fit this age distribution. Instead, we propose that the residual Galapagos plume head, following initial ocean plateau construction, was advected eastward by asthenospheric flow induced by subducting oceanic lithosphere. Slab rollback at the Lesser Antilles and Central America subduction zones created an extensional regime within the Caribbean plate. Mixing of plume with upwelling asthenospheric mantle provided a source for intermittent melting and eruption through the original plateau over a ~30 Ma period.

Description: Annonaceous acetogenins (ACGs) are a group of fatty acid-derivatives with potent anticancer effects. In the present study, we found desacetyluvaricin (Dau) exhibited notable in vitro antiproliferative effect on SW480 human colorectal carcinoma cells with IC 50 value of 14 nM. The studies on the underlying mechanisms revealed that Dau inhibited the cancer cell growth through induction of S phase cell cycle arrest from 11.3% (control) to 33.2% (160 nM Dau), which was evidenced by the decreased protein expression of cyclin A Overproduction of superoxide, intracellular DNA damage, and inhibition of MEK/ERK signaling pathway, were also found involved in cells exposed to Dau. Moreover, pre-treatment of the cells with ascorbic acid significantly prevented the Dau-induced overproduction of superoxide, DNA damage and cell cycle arrest. Taken together, our results suggest that Dau induces S phase arrest in cancer cells by firstly superoxide overproduction and subsequently the involvement of various signaling pathways. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Obesity is a major risk factor for the development of asthma, and causes severe, uncontrolled disease that responds poorly to therapy. The obese state alters early onset allergic asthma, and leads to the development of a novel form of late onset asthma secondary to obesity. The presentation of early onset allergic asthma is altered through effects on immune function. Factors such as mechanical loading, effects of adipokines on airways, altered diet, insulin resistance and altered metabolism of nitric oxide likely all contribute to increased airway reactivity in obesity, causing late onset asthma in obesity. Obesity also alters responses to environmental factors such as ozone and particulate matter. Focused studies to understand the importance of these factors in the pathogenesis of airway disease in obesity will be essential to develop therapies to intervene in this new epidemic of airway disease. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Angiogenesis, the process of new blood vessel formation and growth from already existing venules is critical in vascular development and homeostasis controlled by the balance of pro- and anti-angiogenic factors. Emerging evidence indicates the development, progression and metastasis of various human cancers are strongly relied on angiogenesis. However, molecular mechanisms that underlie the complex regulation of angiogenic processes are still not fully elucidated. Recent studies revealed that microRNAs (miRNAs) were important regulators of tumor angiogenesis and the entire research in this area has entered into a so-called “miRNAs era”. Thus, miRNAs might be important therapeutic targets or biomarkers for cancer. Due to the complexity of miRNA regulating mechanisms, how specific miRNAs intersect with and modulate tumor angiogenesis is still unclear. The conflicting results of the same miRNAs from different groups indicated that miRNAs might possess potent activity in a cell type or cell context specific manner. Here, we present a summary of latest advances in understanding the roles of angiogenic miRNAs as potential tools or targets in cancer therapy. J. Cell. Biochem. © 2013 Wiley Periodicals, Inc.

Description: Secreted phosphoprotein 24 kDa (Spp24) is an apatite- and BMP/TGF-β cytokine-binding phosphoprotein found in serum and many tissues, including bone. N-terminally intact degradation products ranging in size from 14 kDa to 23 kDa have been found in bone. The cleavage sites in Spp24 that produce these short forms have not been definitively identified, and the biological activities and mechanisms of action of Spp24 and its degradation products have not been fully elucidated. We found that the C-terminus of Spp24 is labile to proteolysis by furin, kallikrein, lactoferrin, and trypsin, indicating that both extracellular and intracellular proteolytic events could account for the generation of biologically-active Spp18, Spp16, and Spp14. We determined the effects of these truncation products on kinase-mediated signal transduction, gene expression, and osteoblastic differentiation in W-20-17 bone marrow stromal cells cultured in basal or pro-osteogenic media. After culturing for five days, all forms inhibited BMP-2-stimulated osteoblastic differentiation, assessed as induction of alkaline phosphatase activity, in basal, but not pro-osteogenic media. After 10 days, they also inhibited BMP-2-stimulated mineral deposition in pro-osteogenic media. Spp24 had no effect on Erk1/2 phosphorylation, but Spp18 stimulated short-term Erk1/2, MEK 1/2, and p38 phosphorylation. Pertussis toxin and a MEK1/2 inhibitor ablated Spp18-stimulated Erk 1/2 phosphorylation, indicating a role for G i proteins and MEK1/2 in the Spp18-stimulated Erk1/2 phosphorylation cascade. Truncation products, but not full-length Spp24, stimulated RUNX2, ATF4, and CSF1 transcription. This suggests that Spp24 truncation products have effects on osteoblastic differentiation mediated by kinase pathways that are independent of exogenous BMP/TGF-β cytokines. This article is protected by copyright. All rights reserved

Description: Sarcopenia and osteoporosis have recently been noted for their relationship with locomotive syndrome and increased number of older people. Sarcopenia is defined by decreased muscle mass and impaired muscle function, which may be associated with frailty. Several clinical data have indicated that increased muscle mass is related to increased bone mass and reduced fracture risk. Genetic, endocrine and mechanical factors as well as inflammatory and nutritional states concurrently affect muscle tissues and bone metabolism. Several genes, including myostatin and α-actinin 3, have been shown in a genome-wide association study (GWAS) to be associated with both sarcopenia and osteoporosis. Vitamin D, growth hormone and testosterone as well as pathological disorders, such as an excess in glucocorticoid and diabetes, affect both muscle and bone. Basic and clinical research of bone metabolism and muscle biology suggests that bone interacts with skeletal muscle via signaling from local and humoral factors in addition to their musculoskeletal function. However, the physiological and pathological mechanisms related to muscle and bone interactions remain unclear. We found that Tmem119 may play a critical role in the commitment of myoprogenitor cells to the osteoblast lineage. We also reported that osteoglycin and FAM5C might be muscle-derived humoral osteogenic factors. Other factors, including myostatin, osteonectin, insulin-like growth factor I, irisin and osteocalcin, may be associated with the interactions between muscle tissues and bone metabolism. This article is protected by copyright. All rights reserved

Description: To study how an impacting plume modifies the mantle lithosphere, we analyzed the microstructures and crystal preferred orientations (CPO) of 29 peridotites and 37 pyroxenites that sample the mantle root of the Ontong Java Plateau (OJP) from 60 to 120 km depth. The peridotites show a strong compositional variability, but homogeneous coarse-granular to tabular microstructures, except for those equilibrated at the shallowest and deepest depths, which are porphyroclastic. All peridotites have clear olivine CPO, with dominant fiber-[010] patterns. Low intragranular misorientations and straight grain boundaries in olivine suggest that, above 100 km depth, annealing often followed deformation. Calculated density and P-wave velocities of the peridotites decrease weakly with depth. S-wave velocities decrease faster, resulting in increasing Vp/Vs ratio with depth. Calculated densities and seismic velocity profiles are consistent with those estimated for normal mantle compositions under a cold oceanic geotherm. Enrichment in pyroxenites may further increase seismic velocities. The calculated seismic properties cannot therefore explain the low S-waves velocities predicted by Rayleigh wave tomography and ScS data in the mantle beneath the OJP. Calculated P- and S-wave anisotropy is variable (2-12%). It is higher on average in the deeper section of the lithosphere. Because olivine has dominantly [010]-fiber CPO patterns, if foliations are horizontal, vertically propagating S-waves and Rayleigh waves will sample very weak anisotropy in the OJP mantle lithosphere. Moreover, if the orientation of the lineation changes with depth, the anisotropy-induced contrast in seismic properties might produce an intralithospheric reflector marking the stratification of the OJP mantle root.

Description: The quantification of heat and mass flow between deep reservoirs and the surface is important for understanding magmatic and hydrothermal systems. Here, we use high-resolution measurement of carbon dioxide flux (ϕCO 2 ) and heat flow at the surface to characterize the mass (CO 2 and steam) and heat released to the atmosphere from two magma-hydrothermal systems. Our soil gas and heat flow surveys at Rotokawa and White Island in the Taupō Volcanic Zone, New Zealand, include over 3,000 direct measurements of ϕCO 2 and soil temperature and 60 carbon isotopic values on soil gases. Carbon dioxide flux was separated into background and magmatic/hydrothermal populations based on the measured values and isotopic characterization. Total CO 2 emission rates (ΣCO 2 ) of 441 ± 84 t d -1 and 124 ± 18 t d -1 were calculated for Rotokawa (2.9 km 2 ) and for the crater floor at White Island (0.3 km 2 ), respectively. The total CO 2 emissions differ from previously published values by +386 t d -1 at Rotokawa and +25 t d -1 at White Island, demonstrating that earlier research underestimated emissions by 700% (Rotokawa) and 25% (White Island). These differences suggest that soil CO 2 emissions facilitate more robust estimates of the thermal energy and mass flux in geothermal systems than traditional approaches. Combining the magmatic/hydrothermal-sourced CO 2 emission (constrained using stable isotopes) with reservoir H 2 O:CO 2 mass ratios and the enthalpy of evaporation, the surface expression of thermal energy release for the Rotokawa hydrothermal system (226 MW t ) is 10 times greater than the White Island crater floor (22.5 MW t ).

Description: To better constrain the mechanical behavior of sediments accreted to accretionary prism, we conducted triaxial mechanical tests on natural samples from the Miura-Boso paleo-accretionary prism (Japan) in drained conditions with confining pressures up to 200 MPa as well as post-experiments P-wave velocity (V p ) measurements. During experiments, deformation is principally non-coaxial and accommodated by two successive modes of deformation, both associated with strain-hardening and velocity-strengthening behavior: (1) compaction-assisted shearing, distributed in a several mm-wide shear zone and (2) faulting, localized within a few tens of µm-wide, dilatant fault zone. Deformation is also associated with (1) a decrease in Young's modulus all over the tests, (2) anomalously low V p in the deformed samples compared to their porosity and (3) an increase in sensitivity of V p to effective pressure. We interpret this evolution of the poroelastic properties of the material as reflecting the progressive breakage of intergrain cement and the formation of microcracks along with macroscopic deformation. When applied to natural conditions, these results suggest that the deformation style (localized vs distributed) of shallow (z 〈 a few km) sediments is mainly controlled by the variations in stress/strain rate during the seismic cycle and is therefore independent of the porosity of sediments. Finally, we show that the effect of strain, through cement breakage and microcracks formation, may lower V p for effective pressure up to 40 MPa. As a consequence, the low V p anomalies observed in Nankai accretionary prisms by seismic imaging between 2 and 4km depth [ Kitajima and Saffer , 2012] could reflect sediment deformation rather than porosity anomalies. This article is protected by copyright. All rights reserved.

Description: This study presents a new thermodynamic model for the calculation of phase relations during the melting of anhydrous spinel lherzolite at pressures of 1–2.5 GPa. The model is based on the total energy minimization algorithm for calculating phase equilibria within multicomponent systems and the thermodynamic configuration of Ueki and Iwamori [2013]. The model is based on a SiO 2 – Al 2 O 3 – FeO–Fe 3 O 4 –MgO–CaO system that includes silicate melt, olivine, clinopyroxene, orthopyroxene, and spinel as possible phases. The molar Gibbs free energy of the melt phase is modeled quasi-empirically, and the thermodynamic parameters for silicate melt end-member components are calibrated with a polybaric calibration database. The temperatures and pressures used in this newly compiled calibration dataset are 1230–1600 ∘ C and 0.9–3 GPa, corresponding to the stability range of spinel lherzolite. The modeling undertaken during this study reproduces the general features of experimentally determined melting phase relations of spinel lherzolite at 1–2.5 GPa, including the solidus temperature, the melt composition, the chemical reaction during melting and the degree of melting. This new thermodynamic modeling also reproduces phase relations of various bulk compositions from fertile to deplete spinel lherzolite and can be used in the modeling of polybaric mantle melting within various natural settings. Comparing the results derived from this new modeling with those produced using previous models indicates that the new approach outlined here, involving a combination of total energy minimization and the direct calibration of melt thermodynamic parameters at pressure and temperature conditions corresponding to mantle melting with a relatively simple melt thermodynamic equation, can accurately model polybaric melting phase relations. This article is protected by copyright. All rights reserved.

Description: Tumor cells display different bioenergetic profiles when compared to normal cells. In the present work we showed metabolic reprogramming by means of inhibitors of histone deacetylase (HDACis), sodium butyrate and trichostatin A in breast cancer cells representing different stages of aggressiveness and metabolic profile. When testing the effect of NaB and TSA on viability of cells, it was shown that non-tumorigenic MCF-10A cells were less affected by increasing doses of the drugs than the tumorigenic, hormone dependent, tightly cohesive MCF-7, T-47D and the highly metastatic triple-negative MDA-MB 231 cells. T-47D cells were the most sensitive to treatment with both, NaB and TSA. Experiments measuring anchorage- independent growth of tumor cells showed that MCF-7, T-47D, and MDA-MB-231 cells were equally sensitive to the treatment with NaB. The NaB induced an attenuation of glycolysis, reflected by a decrease in lactate release in MCF-7 and T47D lines. Pyruvate kinase activity was significantly enhanced by NaB in MDA-MB-231 cells only. In contrast, the inhibitor enhanced lactate dehydrogenase activity specifically in T-47 D cells. Glucose-6-phosphate dehydrogenase activity was shown to be differentially modulated by NaB in the cell lines investigated: the enzyme was inhibited in MCF-7 cells, whereas in T-47D and MDA-MB-231 cells, G6PDH was activated. NaB and TSA were able to significantly increase the oxygen consumption by MDA-MB-231 and T-47D cells. Collectively the results show that epigenetic changes associated to acetylation of proteins in general affect the energy metabolism in all cancer cell lines and that mitochondria may occupy a central role in metastasis. This article is protected by copyright. All rights reserved

Description: The volatile contents of olivine-hosted (Fo89–71) melt inclusion glasses in rapidly quenched mafic tephras from volcanic front volcanoes of the Central American Volcanic Arc (CAVA) in Guatemala, Nicaragua, and Costa Rica, were analyzed by secondary ion mass spectrometry (SIMS) in order to derive the minimum eruptive output of CO2, along with H2O, Cl, and S. Details of the analytical method are provided that establish melt inclusion CO2 analyses with the Cameca ims6f at the Helmholtz Centre Potsdam. The highest CO2 concentrations (up to 1800 μg/g) are observed in Nicaraguan samples, while melt inclusions from Guatemala and Costa Rica have CO2 contents between 50 and 500 μg/g. CO2 does not positively covary with sediment/slab fluid tracers such as Ba/La, Ba/Th, or U/La. Instead, the highest CO2 concentrations occur in the inclusions with the most depleted incompatible element compositions and low H2O, approaching the composition of mid-ocean ridge basalts (MORBs), whereas the most H2O-rich inclusions are relatively CO2-poor (

Description: We determined the focal mechanism solutions (FMS) of 191 crustal earthquakes as well as the stress tensor in the source area of the 2008 Iwate-Miyagi earthquake (2008 IMEQ, M7.2) that occurred in the central portion of northeast (NE) Japan. The FMS and the stress tensors were determined by using both 1-D and 3-D velocity models, which exhibit almost the same results. The differences caused by the use of 1-D and 3-D models can be neglected when compared with the differences due to the different methods, which indicates that the FMS and the stress tensor determined with a 1-D model are accurate enough to study the crustal stress field in the study region. The obtained P axis (σ1) trends WNW-ESE subhorizontally, and the T axis (σ3) is oriented subvertically in a NNE-SSW belt perpendicular to σ1. The σ1 orientation is consistent with the motion of the Pacific plate relative to NE Japan, which indicates that the plate boundary forces dominate the intraplate stress regime. Both temporal and spatial variations of the stress field in the IMEQ source area are detected, which may be induced by the stress rotation accompanying the main shock and its aftershocks. The seismogenic faults in the study area are estimated to be very weak, which argues against the concept of strong crust. The faults may be weakened by the high-temperature magma and the fluids in the lower crust and uppermost mantle that intrude upward into the shallower crust.

Description: The Integrated Ocean Drilling Program (IODP) Hole 1301A on the eastern flank of Juan de Fuca Ridge was used in the first long-term deployment of microbial enrichment flow cells using osmotically driven pumps in a subseafloor borehole. Three novel osmotically driven colonization systems with unidirectional flow were deployed in the borehole and incubated for 4 years to determine the microbial colonization preferences for 12 minerals and glasses present in igneous rocks. Following recovery of the colonization systems, we measured cell density on the minerals and glasses by fluorescent staining and direct counting and found some significant differences between mineral samples. We also determined the abundance of mesophilic and thermophilic culturable organotrophs grown on marine R2A medium and identified isolates by partial 16S or 18S rDNA sequencing. We found that nine distinct phylotypes of culturable mesophilic oligotrophs were present on the minerals and glasses and that eight of the nine can reduce nitrate and oxidize iron. Fe(II)-rich olivine minerals had the highest density of total countable cells and culturable organotrophic mesophiles, as well as the only culturable organotrophic thermophiles. These results suggest that olivine (a common igneous mineral) in seawater-recharged ocean crust is capable of supporting microbial communities, that iron oxidation and nitrate reduction may be important physiological characteristics of ocean crust microbes, and that heterogeneously distributed minerals in marine igneous rocks likely influence the distribution of microbial communities in the ocean crust.

Description: We present the first comprehensive study of mass wasting processes in the continental slope of a convergent margin of a subduction zone where tectonic processes are dominated by subduction erosion. We have used multibeam bathymetry along ∼1300 km of the Middle America Trench of the Central America Subduction Zone and deep-towed side-scan sonar data. We found abundant evidence of large-scale slope failures that were mostly previously unmapped. The features are classified into a variety of slope failure types, creating an inventory of 147 slope failure structures. Their type distribution and abundance define a segmentation of the continental slope in six sectors. The segmentation in slope stability processes does not appear to be related to slope preconditioning due to changes in physical properties of sediment, presence/absence of gas hydrates, or apparent changes in the hydrogeological system. The segmentation appears to be better explained by changes in slope preconditioning due to variations in tectonic processes. The region is an optimal setting to study how tectonic processes related to variations in intensity of subduction erosion and changes in relief of the underthrusting plate affect mass wasting processes of the continental slope. The largest slope failures occur offshore Costa Rica. There, subducting ridges and seamounts produce failures with up to hundreds of meters high headwalls, with detachment planes that penetrate deep into the continental margin, in some cases reaching the plate boundary. Offshore northern Costa Rica a smooth oceanic seafloor underthrusts the least disturbed continental slope. Offshore Nicaragua, the ocean plate is ornamented with smaller seamounts and horst and graben topography of variable intensity. Here mass wasting structures are numerous and comparatively smaller, but when combined, they affect a large part of the margin segment. Farther north, offshore El Salvador and Guatemala the downgoing plate has no large seamounts but well-defined horst and graben topography. Off El Salvador slope failure is least developed and mainly occurs in the uppermost continental slope at canyon walls. Off Guatemala mass wasting is abundant and possibly related to normal faulting across the slope. Collapse in the wake of subducting ocean plate topography is a likely failure trigger of slumps. Rapid oversteepening above subducting relief may trigger translational slides in the middle Nicaraguan upper Costa Rican slope. Earthquake shaking may be a trigger, but we interpret that slope failure rate is lower than recurrence time of large earthquakes in the region. Generally, our analysis indicates that the importance of mass wasting processes in the evolution of margins dominated by subduction erosion and its role in sediment dynamics may have been previously underestimated.

Description: In the past decade, major advancements in precision and accuracy of U-Pb geochronology, which stem from improved sample pretreatment and refined measurement techniques, have revealed previously unresolvable discrepancies among analyses from different laboratories. One solution to evaluating and resolving many of these discrepancies is the adoption of a common software platform that standardizes data-processing protocols, enabling robust interlaboratory comparisons. We present the results of a collaboration to develop cyber infrastructure for high-precision U-Pb geochronology based on analyzing accessory minerals by isotope dilution-thermal ionization mass spectrometry. This cyber infrastructure implements an architecture specifying the workflows of data acquisition, statistical filtering, analysis and interpretation, publication, community-based archiving, and the compilation and comparison of data from different laboratories. The backbone of the cyber infrastructure consists of two open-source software programs: Tripoli and U-Pb_Redux. Tripoli interfaces with commercially available mass spectrometers using standardized protocols, statistical filtering, and interactive visualizations to aid the analyst in preparing raw data for analysis in U-Pb_Redux. U-Pb_Redux implements the architecture by orchestrating the analyst's workflow with interactive visualizations and provides data reduction and uncertainty propagation that support data interpretations. Finally, U-Pb_Redux enables production of publication-ready graphics and data tables, the archiving of results, and the comparative compilation of archived results to support cooperative science.

Description: The late Holocene activity of a restraining bend of the northern strand of the North Anatolian Fault in Izmit Bay was investigated by a sedimentological, geochemical, and paleoecological analysis of sediment cores from Hersek coastal lagoon, NW Turkey. The sediment cores show a succession of sedimentary sequences composed of three units separated by gradual transitions. The first unit is composed of a thin layer of shell debris-rich sediment in abrupt contact with the underlying organic-rich deposits. This unit is overlain by a thick foraminifera-rich mud deposit, and the sequences are capped by an organic-rich mud unit. These sequences are interpreted as silting up, shallowing upward deposits, typical of a lagoon becoming isolated from the sea. We suggest that they represent the sedimentary signature of coseismic subsidence, which was caused by reverse slip at the Hersek bend, and tsunamis in Izmit Bay. Our radiocarbon-dated paleoseismological record indicates (1) the atypical collapse of the hanging wall during the 740 earthquake and (2) subsidence of the footwall during the 987, 1509, and 1719 earthquakes. This study contributes to the understanding of the dynamics of restraining bends, and it highlights the potential of coastal sediments for reconstructing past earthquakes and tsunamis in regions dominated by strike-slip deformations.

Description: Estimates of slab curvature from 133 profiles across 12 major subduction zones are obtained by fitting splines through earthquakes locations. Several geometric quantities are computed from the spline fits, including the minimum radius of curvature. We also introduce a quantity called the equivalent radius of curvature to precisely define the bending dissipation in either a viscous or a plastic slab. The minimum and equivalent radius of curvature are approximately equal in slabs with simple geometry (i.e., a single bend) but deviate substantially when the geometry is more complicated. A compilation of estimates shows that the equivalent radius of curvature is insensitive to the age of the plate at the trench. Mean values are 175 km or 191 km, depending on the rheology of the slab. When bending occurs by viscous deformation, the resulting dissipation can exceed the power available from subduction with reasonable choices for viscosity. A more consistent description of the energetics is obtained by assuming a plastic rheology.

Description: New geochemical and microstructural data constrain the origins and pathways of paleofluids during the growth of Sheep Mountain Anticline, Wyoming, United States. Oxygen, carbon, and strontium isotope studies were performed on prefolding and fold-related calcite veins and their sedimentary host rocks and combined to fluid inclusion microthermometry results. We show that most of the cements precipitated from Paleogene meteoric fluid. Stable isotopes and fluid inclusion homogenization temperatures further indicate that most veins were mineralized from upward moving fluids after these fluids were heated at depth (T 〉 110°C). This implies that fluids migrated along the basement thrust underlying the fold and/or at the base of the cover. Above the fault tip, the fluids circulated rapidly in the diffuse synfolding (and early folding) fracture network. The zone of preferential migration of the warm fluids is currently located in the backlimb of the fold, which supports some of the previously published structural interpretation of the subsurface. This study also highlights the potential of combined fracture analysis and geochemical analyses of paleofluid flows in fractures to constrain both the deformation history and the fluid flow during basement-involved shortening in Laramide-style forelands.

Description: Basalts from the Mid-Atlantic Ridge change progressively in composition with increasing distance from the Azores platform. Study of the Lucky Strike and Menez Gwen segments reveals much complexity in the gradient. Both segments contain only basalts enriched relative to normal mid-oceanic ridge basalt, but in two distinct groups. Moderately enriched basalts occur throughout the segments, with proximal Menez Gwen enriched relative to Lucky Strike. Highly enriched basalts occur at segment centers. Incompatible element ratios of the highly enriched basalts exceed those of the Azores platform, while isotopic compositions are less enriched. These observations can be explained by a low-degree melt of garnet-bearing Azores mantle added to mantle depleted by previous melt extraction. Melting this “metasomatized” mantle produces lavas that match the enriched samples. The Azores gradient cannot be explained by simple two-component mixing; rather, it reflects recent melt extraction and addition processes related to southward flow of the Azores plume. The Azores gradient also permits tests of segmentation models. Central supply models predict step functions in chemical compositions between segments. Within-segment gradients require vertical supply. Central supply is supported by robust central volcanoes, thicker crust at segment centers, and a step function in isotopes between the segments. The lava diversity at segment centers, however, requires batches of distinct magma that are preserved through melting and melt delivery. Within-segment gradients in moderately incompatible element ratios support a component of multiple supply. The data suggest partial homogenization of magma within a segment and preferential melt focusing to segment centers with some vertical transport.

Description: The nitrogen isotopic composition of organic matter contained within diatom frustules of different sediment size fractions from the Guaymas Basin, Gulf of California, suggests that multiple nutrient cycling processes can be examined from a single sediment sample. The diatom-bound δ15N values from the greater and less than 63 μm size fractions were analyzed from six intervals of core MD02–2517, each representing ∼30–40 years. The diatom-bound δ15N values are compared to bulk sedimentary δ15N values, weight percent biogenic opal, and weight percent organic carbon. Bulk sedimentary δ15N values range from 10‰ to 12.5‰ and diatom-bound δ15N values of the 63 μm fraction range from 1‰ to 7‰. The best explanation for the low diatom δ15N values in the 〉63 μm fraction is that the large diatoms grew at the base of the euphotic zone in excess nitrate and under low light conditions. Large diatom δ15N values correlate significantly with bulk sedimentary δ15N values (r = 0.68, 0.82), indicating that large diatoms, such as Thalassiothrix longissima, are an important component of export production fueled by a nonupwelling source of nitrogen. The 〉63 μm diatoms are estimated to contribute between 3% and 15% of the total nitrogen in the sediments based upon an assumed Si-to-N ratio of 1.2.

Description: Episodic tremor and slip (ETS) has been observed in many subduction zones, but its mechanical underpinnings as well as its potential for triggering damaging earthquakes have proven difficult to assess. Here we use a seismic array in Cascadia of unprecedented density to monitor seismicity around a moderate 16 day ETS episode. In the 4 months of data we examine, we observe five tiny earthquakes within the subducting slab during the episode and only one more in the same area, which was just before and nearby the next ETS burst. These earthquakes concentrate along the sides and updip edge of the ETS region, consistent with greater stress concentration there than near the middle and downdip edge of the tremor area. Most of the seismicity is below the megathrust, with a similar depth extent to the background intraslab seismicity. The pattern of earthquakes that we find suggests slow slip has a more continuous temporal and spatial pattern than the tremor loci, which notoriously appear in bursts, jumps, and streaks.

Description: Dust samples collected from subway platforms in Shanghai, China, have been examined using magnetic measurements and geochemical analysis. Our results indicate that the Shanghai subway platform dusts have extremely strong magnetic signatures. These results, combined with X-ray diffraction analysis and scanning and transmission electron microscope examinations, indicate that the magnetic mineralogy of the dust is dominated by iron scraps due to wheel-rail mechanical abrasion and spherules rich in magnetite from fossil fuel combustion. Although the magnetic particles are primarily micrometer sized, fine submicron magnetic grains are also evident in the dust. The underground platform dusts have a much higher iron flake abundance and magnetic susceptibility than those from aboveground platforms because the latter ones are diluted by inputs of magnetically weaker ambient aerosols with a higher proportion of magnetite spherules. Geochemical analysis indicates that underground platform dusts have elevated Fe and Mn, but lower Al and Ti contents relative to aboveground subway dust. This is consistent with the closed nature of underground platforms, which therefore reduces exposure to soil-derived dust. Since the adverse environmental effects of subway particles may be linked to higher contents of iron and other metals, our results demonstrate that magnetic measurements provide a novel and effective approach for characterizing iron mineralogy and grain size in subway dusts.

Description: The Cocos plate experiences extensional faulting as it bends into the Middle American Trench (MAT) west of Nicaragua, which may lead to hydration of the subducting mantle. To estimate the along strike variations of volatile input from the Cocos plate into the subduction zone, we gathered marine seismic refraction data with the R/V Marcus Langseth along a 396 km long trench parallel transect offshore of Nicaragua and Costa Rica. Our inversion of crustal and mantle seismic phases shows two notable features in the deep structure of the Cocos plate: (1) Normal oceanic crust of 6 km thickness from the East Pacific Rise (EPR) lies offshore Nicaragua, but offshore central Costa Rica we find oceanic crust from the northern flank of the Cocos Nazca (CN) spreading center with more complex seismic velocity structure and a thickness of 10 km. We attribute the unusual seismic structure offshore Costa Rica to the midplate volcanism in the vicinity of the Galápagos hot spot. (2) A decrease in Cocos plate mantle seismic velocities from ∼7.9 km/s offshore Nicoya Peninsula to ∼6.9 km/s offshore central Nicaragua correlates well with the northward increase in the degree of crustal faulting outboard of the MAT. The negative seismic velocity anomaly reaches a depth of ∼12 km beneath the Moho offshore Nicaragua, which suggests that larger amounts of water are stored deep in the subducting mantle lithosphere than previously thought. If most of the mantle low velocity zone can be interpreted as serpentinization, the amount of water stored in the Cocos plate offshore central Nicaragua may be about 2.5 times larger than offshore Nicoya Peninsula. Hydration of oceanic lithosphere at deep sea trenches may be the most important mechanism for the transfer of aqueous fluids to volcanic arcs and the deeper mantle.

Description: The Cenozoic Song Hong–Yinggehai Basin in the South China Sea contains a large volume of sediment that has been used in previous studies, together with regional geomorphology, to argue for the existence of a large palaeodrainage system that connected eastern Tibet with the South China Sea. To test this and to understand the significance of sediment volumes deposited in the Song Hong–Yinggehai Basin, this study compared erosion histories of source regions with sediment volumes deposited during the two main stages in basin evolution spanning active rifting and subsidence (30–15.5 Ma) and postrift sedimentation (15.5 Ma to present). The study of basin provenance by detrital zircon U-Pb dating revealed Hainan was an important and continuous source of sediment, and a bedrock thermochronological study quantified its overall contribution to basin sedimentation. Comparison between the accumulated mass of basin sediment and volumes of eroded bedrock, calculated from apatite thermochronometry across the modern Red River drainage in northern Vietnam as well as Hainan Island, accounted for the bulk of sediment deposited since 30 Ma. Consequently, if an expanded paleodrainage ever existed it must have predated the Oligocene.

Description: Quartz mylonites from the Tonale Fault Zone in the Alps (northern Italy) have been investigated by the Ti-in-quartz geothermometer (TitaniQ) in order to test its applicability to measure deformation temperatures. The eastern part of the Tonale Fault Zone was contact metamorphosed by the synkinematic intrusion of the Adamello pluton, forming an ∼800 m wide mylonitic shear zone, with a synkinematic temperature gradient from ∼280°C at the frictional-viscous transition to ∼700°C at the pluton contact as derived from metamorphic mineral assemblages. Deformation microstructures from quartz mylonite samples, systematically collected across the mylonitic shear zone, display the entire range of dynamic recrystallization in quartz, which comprise bulging recrystallization (BLG), subgrain rotation recrystallization (SGR), and grain boundary migration recrystallization (GBM). TitaniQ geothermometry yields the near-peak deformation temperature for quartz mylonites deformed at metamorphic temperatures above ∼540°C in the zone of GBM. However, for mylonites formed under lower temperatures in the zones of SGR and BLG, the preexisting Ti concentrations were not reset. It is suggested that this is due to the sluggish Ti volume diffusion rates below 500°C and the short duration of contact metamorphism and deformation. Even in the higher temperature samples the reequilibration of Ti-in-quartz content was achieved by grain boundary migration rather than by volume diffusion. Hence, our results show that GBM is crucial for the reequilibration of Ti-in-quartz, while quartz mylonites deformed by either BLG or SGR, which predominate in natural shear zones at greenschist facies metamorphic conditions, most likely yield inherited temperatures.

Description: High-precision U-Pb geochronology by isotope dilution-thermal ionization mass spectrometry is integral to a variety of Earth science disciplines, but its ultimate resolving power is quantified by the uncertainties of calculated U-Pb dates. As analytical techniques have advanced, formerly small sources of uncertainty are increasingly important, and thus previous simplifications for data reduction and uncertainty propagation are no longer valid. Although notable previous efforts have treated propagation of correlated uncertainties for the U-Pb system, the equations, uncertainties, and correlations have been limited in number and subject to simplification during propagation through intermediary calculations. We derive and present a transparent U-Pb data reduction algorithm that transforms raw isotopic data and measured or assumed laboratory parameters into the isotopic ratios and dates geochronologists interpret without making assumptions about the relative size of sample components. To propagate uncertainties and their correlations, we describe, in detail, a linear algebraic algorithm that incorporates all input uncertainties and correlations without limiting or simplifying covariance terms to propagate them though intermediate calculations. Finally, a weighted mean algorithm is presented that utilizes matrix elements from the uncertainty propagation algorithm to propagate random and systematic uncertainties for data comparison between other U-Pb labs and other geochronometers. The linear uncertainty propagation algorithms are verified with Monte Carlo simulations of several typical analyses. We propose that our algorithms be considered by the community for implementation to improve the collaborative science envisioned by the EARTHTIME initiative.

Description: Orogeny in the geologically young northern Apennines is explained by the eastward retreat of a convergence zone in which Adriatic lithosphere subducts to the west. It is unclear, however, whether all of the lithosphere or only the lower portion has subducted since 15 Ma, when the convergence zone lay near Corsica. We combine teleseismic P and S wave arrival time data from the RETREAT seismic network (2003–2006) and surrounding permanent stations to estimate tomographic images of the upper mantle structure beneath the northern Apennines. We image a vertically oriented slab that that extends to only ∼300 km depth. Our slab termination is shallower than previous studies but is confirmed by resolution tests. Furthermore, our images resolve the southern edge of the northern Apennines slab at ∼43°N, with no deep continuity with any slab segment to the south, as earlier proposed. Our results suggest that only a 300–400 km strip of lithosphere has subducted since 15 Ma beneath the northern Tyrrhenian Sea, a length roughly equivalent to the distance from the present-day west coast of Corsica to the crest of the northern Apennines. Although not a definitive indicator, the largely aseismic vertical slab configuration and its limited extent, coupled with other volcanic and geophysical indicators, suggests the delamination scenario of Bird (1979), in which only the lower portion of the continental lithosphere subducts.

Description: Over the past several decades, contrasting models have been proposed for the physical and chemical processes responsible for the uplift and long-term stability of the Colorado Plateau (CP) and crustal thinning beneath the Basin and Range Province (BRP) in the southwestern United States. Here we provide new constraints on the models by modeling gravity anomalies and by systematically analyzing over 15,500 P-to-S receiver functions recorded at 72 USArray and other broadband seismic stations on the southwestern CP and the southern BRP. Our results reveal that the BRP is characterized by a thin crust (28.2 ± 0.5 km), a mean Vp/Vs of 1.761 ± 0.014 and a mean amplitude (R) of P-to-S converted wave (relative to that of the direct P wave) of 0.181 ± 0.014 that are similar to a typical continental crust, consistent with the model that the thin crust was the consequence of lithospheric stretching during the Cenozoic. The CP is characterized by the thickest crust (42.3 ± 0.8 km), largest Vp/Vs (1.825 ± 0.009) and smallest R (0.105 ± 0.007) values in the study area. In addition, many stations on the CP exhibit a clear arrival before the P-to-S converted phase from the Moho, corresponding to a lower crustal layer of about 12 km thick with a mafic composition. We hypothesize that the lower crustal layer, which has an anomalously large density as revealed by gravity modeling and high velocities in seismic refraction lines, contributed to the long-term stability and preuplift low elevation of the Colorado Plateau.

Description: We examined the effects of high pressure on thermal conductivity in core samples from the slope–apron facies and the upper part of the accretionary prism at site C0001 of the NanTroSEIZE drilling program and in other samples of five terrestrial rock types. Thermal conductivity clearly increased with increasing pressure for both wet (water saturated) and dry samples. We determined the rate of thermal conductivity change of the NanTroSEIZE sediments to be 0.014 Wm−1K−1/MPa when pressure was increased, and 0.01 Wm−1K−1/MPa when pressure was decreased. Using the rate determined for decreasing pressure, we estimated that thermal conductivities measured at atmospheric pressure rather than at in situ pressure may be underestimated by 7% for a core sample from around 1 km depth and by 20% for a core sample from around 3 km depth. In general, the rate of thermal conductivity change with pressure showed a positive correlation with porosity. However, the relationship of the rate of thermal conductivity change to porosity is also dependent on the fabric, mineral composition, and pore structure of the sediments and rocks. Furthermore, for two sandstones we tested, the effect of pressure on thermal conductivity for dry samples was greater than that for wet samples.

Description: A continuous section from extrusive lavas, through sheeted dikes, and uppermost gabbros recovered from Integrated Ocean Drilling Program Hole 1256D provides important information regarding magma plumbing systems beneath superfast spreading ridges. Petrological examination demonstrates that a model of fractional crystallization from a magma of composition similar to one of the more primitive gabbros in a shallow (∼50–100 MPa) melt lens reasonably explains mineral and whole rock compositions of many lavas and dikes. Elevated concentrations of trace elements in some rocks appear to have resulted from mixing between primitive magma and highly evolved magma. About half of the dike samples have more evolved Fe-rich compositions than the extrusive lava samples. Magma densities of the Fe-rich dikes are a little higher (∼30 kg/m3) than those of lavas, suggesting that these dike magmas would not reach the surface. Mineralogical investigations reveal that both lavas and dikes contain oscillatory zoned plagioclase xenocrysts, implying magma mixing caused by successive episodes of fractionation and magma replenishment in the melt lens. The plagioclase xenocrysts contain high-Anorthite sections [An: 100 × Ca/(Ca+Na) in mole percent] whose compositions are not in equilibrium with host liquids. The high-An sections were likely crystallized when primitive magmas with high CaO/Na2O were injected in the melt lens. Since the oscillatory zoned plagioclase generally forms crystal clots, they were probably accumulated in a mush zone. The petrographical examination favors a model suggesting that injection of primitive magma into the melt lens broke the mush zone and pushed out the oscillatory zoned plagioclase.

Description: Analyses of radiogenic neodymium (Nd), strontium (Sr), and lead (Pb) isotope compositions of clay-sized detrital sediments allow detailed tracing of source areas of sediment supply and present and past transport of particles by water masses in the eastern Indian Ocean. Isotope signatures in surface sediments range from −21.5 ($\varepsilon$Nd), 0.8299 (87Sr/86Sr), and 19.89 (206Pb/204Pb) off northwest Australia to +0.7 ($\varepsilon$Nd), 0.7069 (87Sr/86Sr), and 17.44 (206Pb/204Pb) southwest of Java. The radiogenic isotope signatures primarily reflect petrographic characteristics of the surrounding continental bedrocks but are also influenced by weathering-induced grain size effects of Pb and Sr isotope systems with superimposed features that are caused by current transport of clay-sized particles, as evidenced off Australia where a peculiar isotopic signature characterizes sediments underlying the southward flowing Leeuwin Current and the northward flowing West Australian Current (WAC). Gravity core FR10/95-GC17 off west Australia recorded a major isotopic change from Last Glacial Maximum values of −10 ($\varepsilon$Nd), 0.745 (87Sr/86Sr), and 18.8 (206Pb/204Pb) to Holocene values of −22 ($\varepsilon$Nd), 0.8 (87Sr/86Sr), and 19.3 (206Pb/204Pb), which documents major climatically driven changes of the WAC and in local riverine particle supply from Australia during the past 20 kyr. In contrast, gravity core FR10/95-GC5 located below the present-day pathway of the Indonesian throughflow (ITF) shows a much smaller isotopic variability, indicating a relatively stable ITF hydrography over most of the past 92 kyr. Only the surface sediments differ significantly in their isotopic composition, indicating substantial changes in erosional sources attributed to a change of the current regime during the past 5 kyr.