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  • 1
    Publication Date: 2012-02-22
    Description: This article focuses on user experiences on reading location-aware news on the mobile platform and aims to explore what experiences this kind of locative journalism generates and how such experiences change the users’ social interaction with news. We produced a specially designed mobile application and tailored news stories specific to this project called LocaNews in order to explore participants’ relation to the content in this journalistic format. The result is generated through a field study and a questionnaire of 32 people to find out how they experience the news presented in this format. The user participants’ responses are analyzed based on their news experiences, contextualizing places and their social interaction with the news within this form of journalism. Results showed that the local, semi-local and non-local user approaches the locative news in a different manner, but that the average user found this kind of news more interesting and more informative than ordinary news. The participants also have a problem identifying this as journalism, rather than an information service.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 2
    Publication Date: 2012-03-13
    Description: Readability indices measure how easy or difficult it is to read and comprehend a text. In this paper we look at the relation between readability indices and web documents from two different perspectives. On the one hand we analyse how to reliably measure the readability of web documents by applying content extraction techniques and incorporating a bias correction. On the other hand we investigate how web based corpus statistics can be used to measure readability in a novel and language independent way.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 3
    Publication Date: 2012-03-14
    Description: With the emergence of Web 2.0, new applications arise and evolve into more interactive forms of collective intelligence. These applications offer to both professionals and citizens an open and expanded access to geographic information. In this paper, we develop the conceptual foundations of a new technology solution called WikiGIS. WikiGIS’s strength lies in its ability to ensure the traceability of changes in spatial-temporal geographic components (geometric location and shape, graphics: iconography and descriptive) generated by users. The final use case highlights to what extent WikiGIS could be a relevant and useful technological innovation in Geocollaboration.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 4
    Publication Date: 2012-03-15
    Description: In this paper, we integrate a grid system and a wireless network to present a convenient computational service system, called the Semi-Preemptive Computational Service system (SePCS for short), which provides users with a wireless access environment and through which a user can share his/her resources with others. In the SePCS, each node is dynamically given a score based on its CPU level, available memory size, current length of waiting queue, CPU utilization and bandwidth. With the scores, resource nodes are classified into three levels. User requests based on their time constraints are also classified into three types. Resources of higher levels are allocated to more tightly constrained requests so as to increase the total performance of the system. To achieve this, a resource broker with the Semi-Preemptive Algorithm (SPA) is also proposed. When the resource broker cannot find suitable resources for the requests of higher type, it preempts the resource that is now executing a lower type request so that the request of higher type can be executed immediately. The SePCS can be applied to a Vehicular Ad Hoc Network (VANET), users of which can then exploit the convenient mobile network services and the wireless distributed computing. As a result, the performance of the system is higher than that of the tested schemes.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 5
    Publication Date: 2012-12-20
    Description: The neutral point of view (NPOV) cornerstone of Wikipedia (WP) is challenged for next generation knowledge bases. A case is presented for content neutrality as a new, every point of view (EPOV) guiding principle. The architectural implications of content neutrality are discussed and translated into novel concepts of Wiki architectures. Guidelines for implementing this architecture are presented. Although NPOV is criticized, the contribution avoids ideological controversy and focuses on the benefits of the novel approach.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 6
    Publication Date: 2012-11-09
    Description: Semantic publishing offers the promise of computable papers, enrichedvisualisation and a realisation of the linked data ideal. In reality, however, the publicationprocess contrives to prevent richer semantics while culminating in a "lumpen" PDF. In thispaper, we discuss a web-first approach to publication, and describe a three-tiered approachthat integrates with the existing authoring tooling. Critically, although it adds limitedsemantics, it does provide value to all the participants in the process: the author, the readerand the machine. 
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 7
    Publication Date: 2012-11-10
    Description: The ability to restore American chestnut (Castanea dentata) through the planting of blight-resistant (Cryphonectria parasitica) trees is currently being tested. Forest-based research on the species’ silvicultural requirements and chestnut blight development are lacking. Pure American chestnut seedlings were planted in a two-age shelterwood forest with low residual basal area and in a midstory-removal treatment with high residual basal area. Survival did not differ between silvicultural treatments and averaged 67 percent across both treatments by the fifth year. Trees in the two-age shelterwood were 2.36 m and 16.8 mm larger in height and ground-line diameter, respectively, compared to trees in the midstory-removal by the fifth growing season. Blight occurrence was not affected by silvicultural treatment. Exploratory analyses indicated that seedling grading at planting and keeping trees free-to-grow through competition control would have resulted in a two-year gain in height and GLD growth in the two-age shelterwood treatment. The two-age shelterwood represented the most efficacious prescription for chestnut restoration, but the midstory-removal prescription may offer a reasonable alternative in areas where harvesting must be delayed.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 8
    Publication Date: 2012-12-11
    Description: While the current focus on how digital technology alters our conception of the self and its place in the broader perceived reality yields fascinating insight into modern issues, there is much to be gained by analyzing the presence of dualist and augmented reality discourses in a pre-digital era. This essay will examine the ontological interplay of textual dualist norms in the Russian and Soviet states of the 19th and early 20th centuries and how those norms were challenged by augmented claims embodied in rumors, refrains, and the spelling of names. By utilizing the informational concepts of mobility and asynchronicity, three Russian historical vignettes—the Emancipation of the Serfs in 1861, the documentation of Jews in Imperial Russia, and the attempts by Trotsky to realize Soviet symchka—demonstrate that not only are dualist discourses prevalent in periods outside of the contemporary, but also that the way in which those conflicts framed themselves in the past directly influences their deployment in today’s digital world.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 9
    Publication Date: 2012-09-27
    Description: Imperata cylindrica is an invasive plant species that threatens diversity and forest productivity in southeastern ecosystems. We examined the effects of disturbance events, particularly fire and hurricane/salvage harvesting, to determine the effects on I. cylindrica abundance in longleaf pine (Pinus palustris) forests in the Florida panhandle. Areas that were burned or had greater biomass removal following a hurricane had a greater number of I. cylindrica patches and larger patch size. These results highlight the importance of disturbance events on expanding invasive species populations in this region and are likely applicable for other invasive species as well. Monitoring and treatment should follow disturbance events to ensure that invasive species populations do not exceed unmanageable levels.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 10
    Publication Date: 2012-10-02
    Description: A recent policy response to halting global forest deforestation and degradation, and any resulting greenhouse gas emissions is REDD+, which also includes the role of conservation, sustainable management of forests and enhancement of forest carbon stocks. Although still in its infancy, the success of REDD+ will depend significantly on whether it can be economically viable and if any resulting payments are sufficient to cover the opportunity cost plus any transaction cost. Where tenure security over forest is weak, REDD+ can pose a risk for forest communities, who could be dispossessed, excluded and marginalized. This review of existing studies explores how payment for avoided deforestation, and forest tenure impact the success of REDD+ projects in terms of effectiveness, efficiency and equity. Effectiveness refers to the difference between deforestation with and without REDD+, efficiency refers to avoiding deforestation at minimal cost, and equity refers to the implication of REDD+ on benefit sharing. We conclude that the potential success or failure of REDD+ as a means to reduce deforestation and carbon emission on forest commons depends critically on designing projects that work within existing informal tenure institutions to ensure that carbon storage benefits align with livelihood benefits.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 11
    Publication Date: 2012-10-16
    Description: Forecasting the unit cost of every product type in a factory is an important task. However, it is not easy to deal with the uncertainty of the unit cost. Fuzzy collaborative forecasting is a very effective treatment of the uncertainty in the distributed environment. This paper presents some linear fuzzy collaborative forecasting models to predict the unit cost of a product. In these models, the experts’ forecasts differ and therefore need to be aggregated through collaboration. According to the experimental results, the effectiveness of forecasting the unit cost was considerably improved through collaboration.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 12
    Publication Date: 2012-10-16
    Description: Imperialist Competitive Algorithm (ICA) is a new population-based evolutionary algorithm. It divides its population of solutions into several sub-populations, and then searches for the optimal solution through two operations: assimilation and competition. The assimilation operation moves each non-best solution (called colony) in a sub-population toward the best solution (called imperialist) in the same sub-population. The competition operation removes a colony from the weakest sub-population and adds it to another sub-population. Previous work on ICA focuses mostly on improving the assimilation operation or replacing the assimilation operation with more powerful meta-heuristics, but none focuses on the improvement of the competition operation. Since the competition operation simply moves a colony (i.e., an inferior solution) from one sub-population to another sub-population, it incurs weak interaction among these sub-populations. This work proposes Interaction Enhanced ICA that strengthens the interaction among the imperialists of all sub-populations. The performance of Interaction Enhanced ICA is validated on a set of benchmark functions for global optimization. The results indicate that the performance of Interaction Enhanced ICA is superior to that of ICA and its existing variants.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 13
    Publication Date: 2012-09-22
    Description: The social trend is progressively becoming the key feature of current Web understanding (Web 2.0). This trend appears irrepressible as millions of users, directly or indirectly connected through social networks, are able to share and exchange any kind of content, information, feeling or experience. Social interactions radically changed the user approach. Furthermore, the socialization of content around social objects provides new unexplored commercial marketplaces and business opportunities. On the other hand, the progressive evolution of the web towards the Semantic Web (or Web 3.0) provides a formal representation of knowledge based on the meaning of data. When the social meets semantics, the social intelligence can be formed in the context of a semantic environment in which user and community profiles as well as any kind of interaction is semantically represented (Semantic Social Web). This paper first provides a conceptual analysis of the second and third version of the Web model. That discussion is aimed at the definition of a middle concept (Web 2.5) resulting in the convergence and integration of key features from the current and next generation Web. The Semantic Social Web (Web 2.5) has a clear theoretical meaning, understood as the bridge between the overused Web 2.0 and the not yet mature Semantic Web (Web 3.0).
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 14
    Publication Date: 2012-09-27
    Description: In this paper we demonstrate a family of metrics for estimating the quality of a text summary relative to one or more human-generated summaries. The improved metrics are based on features automatically computed from the summaries to measure content and linguistic quality. The features are combined using one of three methods—robust regression, non-negative least squares, or canonical correlation, an eigenvalue method. The new metrics significantly outperform the previous standard for automatic text summarization evaluation, ROUGE.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 15
    Publication Date: 2012-10-20
    Description: We propose using side information to further inform anomaly detection algorithms of the semantic context of the text data they are analyzing, thereby considering both divergence from the statistical pattern seen in particular datasets and divergence seen from more general semantic expectations. Computational experiments show that our algorithm performs as expected on data that reflect real-world events with contextual ambiguity, while replicating conventional clustering on data that are either too specialized or generic to result in contextual information being actionable. These results suggest that our algorithm could potentially reduce false positive rates in existing anomaly detection systems.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 16
    Publication Date: 2012-10-23
    Description: Data can be represented in many different ways within a particular document or set of documents. Hence, attempts to automatically process the relationships between documents or determine the relevance of certain document objects can be problematic. In this study, we have developed software to automatically catalog objects contained in HTML files for patents granted by the United States Patent and Trademark Office (USPTO). Once these objects are recognized, the software creates metadata that assigns a data type to each document object. Such metadata can be easily processed and analyzed for subsequent text mining tasks. Specifically, document similarity and clustering techniques were applied to a subset of the USPTO document collection. Although our preliminary results demonstrate that tables and numerical data do not provide quantifiable value to a document’s content, the stage for future work in measuring the importance of document objects within a large corpus has been set.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 17
    Publication Date: 2012-04-06
    Description: Link puzzles involve finding paths or a cycle in a grid that satisfy given local and global properties. This paper proposes algorithms that enumerate solutions and instances of two link puzzles, Slitherlink and Numberlink, by zero-suppressed binary decision diagrams (ZDDs). A ZDD is a compact data structure for a family of sets provided with a rich family of set operations, by which, for example, one can easily extract a subfamily satisfying a desired property. Thanks to the nature of ZDDs, our algorithms offer a tool to assist users to design instances of those link puzzles.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 18
    Publication Date: 2012-04-11
    Description: Deduplication in storage systems has gained momentum recently for its capability in reducing data footprint. However, deduplication introduces challenges to storage management as storage objects (e.g., files) are no longer independent from each other due to content sharing between these storage objects. In this paper, we present a graph-based framework to address the challenges of storage management due to deduplication. Specifically, we model content sharing among storage objects by content sharing graphs (CSG), and apply graph-based algorithms to two real-world storage management use cases for deduplication-enabled storage systems. First, a quasi-linear algorithm was developed to partition deduplication domains with a minimal amount of deduplication loss (i.e., data replicated across partitioned domains) in commercial deduplication-enabled storage systems, whereas in general the partitioning problem is NP-complete. For a real-world trace of 3 TB data with 978 GB of removable duplicates, the proposed algorithm can partition the data into 15 balanced partitions with only 54 GB of deduplication loss, that is, a 5% deduplication loss. Second, a quick and accurate method to query the deduplicated size for a subset of objects in deduplicated storage systems was developed. For the same trace of 3 TB data, the optimized graph-based algorithm can complete the query in 2.6 s, which is less than 1% of that of the traditional algorithm based on the deduplication metadata.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 19
    Publication Date: 2012-04-11
    Description: Grammar-based compression is a well-studied technique to construct a context-free grammar (CFG) deriving a given text uniquely. In this work, we propose an online algorithm for grammar-based compression. Our algorithm guarantees O(log2 n)- approximation ratio for the minimum grammar size, where n is an input size, and it runs in input linear time and output linear space. In addition, we propose a practical encoding, which transforms a restricted CFG into a more compact representation. Experimental results by comparison with standard compressors demonstrate that our algorithm is especially effective for highly repetitive text.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 20
    Publication Date: 2012-04-13
    Description: Visitor information often serves as the basis for the management plan of parks. However, there exist few scientific and fundamental surveys for parks and open spaces in Japan. We analyzed the correlation between the number of visitors and the various factors in a suburban open space in a northern Japanese city, Takino Park. To explain the fluctuations in the number of visitors in Takino Park, multiple regression analyses with the stepwise method were conducted. The analyses employed social factors and meteorological factors, such as the day of the week, school vacations, temperature and the weather. The results show that the most influential factor is the day of the week, i.e., Sundays and holidays. The weather is also influential as the number of visitors decreases on rainy and snowy days. Comparing different seasons of the year, we found that influential factors varied from one season to the other. A key distinguishing finding of our results is that the weather conditions at the departure site and the weather forecast are also determining factors. These findings will help park managers understand the current situations and examine future management strategies to maintain and enhance visitor satisfaction, and improve information services.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 21
    Publication Date: 2012-04-12
    Description: Semantic Web Services (SWS) are Web Service (WS) descriptions augmented with semantic information. SWS enable intelligent reasoning and automation in areas such as service discovery, composition, mediation, ranking and invocation. This paper applies SWS to a previous protocol adapter which, operating within clearly defined constraints, maps SOAP Web Services to RESTful HTTP format. However, in the previous adapter, the configuration element is manual and the latency implications are locally based. This paper applies SWS technologies to automate the configuration element and the latency tests are conducted in a more realistic Internet based setting.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 22
    Publication Date: 2012-04-14
    Description: A disentanglement puzzle consists of mechanically interlinked pieces, and the puzzle is solved by disentangling one piece from another set of pieces. A string puzzle consists of strings entangled with one or more wooden pieces. We consider the generalized string puzzle problem whose input is the layout of strings and a wooden board with holes embedded in the 3-dimensional Euclidean space. We present a polynomial-time transformation from an arbitrary instance ƒ of the 3SAT problem to a string puzzle s such that ƒ is satisfiable if and only if s is solvable. Therefore, the generalized string puzzle problem is NP-hard.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 23
    Publication Date: 2012-08-25
    Description: When an event occurs in the real world, numerous news reports describing this event start to appear on different news sites within a few minutes of the event occurrence. This may result in a huge amount of information for users, and automated processes may be required to help manage this information. In this paper, we describe a clustering system that can cluster news reports from disparate sources into event-centric clusters—i.e., clusters of news reports describing the same event. A user can identify any RSS feed as a source of news he/she would like to receive and our clustering system can cluster reports received from the separate RSS feeds as they arrive without knowing the number of clusters in advance. Our clustering system was designed to function well in an online incremental environment. In evaluating our system, we found that our system is very good in performing fine-grained clustering, but performs rather poorly when performing coarser-grained clustering.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
    Published by MDPI Publishing
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  • 24
    Publication Date: 2012-08-28
    Description: Long-term changes for invasive trees and shrubs presence in 16 floras encompassing four remnant urban forests of the coastal northeastern United States were examined for relationships with arboricultural introductions’ residence time and planting intensity, and state level recognition of regional invasive woody taxa. The number of invasive woody taxa significantly increased over the period 1818 to 2011 which encompasses the 16 floras. No significant Pearson product moment correlations were found for residence time as the year of introduction to arboriculture with presence in the 16 floras as well as with the 4 most recent floras. In contrast to residence time, planting intensity from the North American flora and two botanical gardens floras of the region from 1811 to 1818 and New York and Philadelphia parks floras from 1857 to 1903 did have significant correlations with the 16 floras and the 4 most recent floras. State level recognition of regional invasive woody taxa showed significant correlations with presence in all 16 floras as well as the 4 most recent floras. Monitoring for range expansion by the regional invasive woody taxa is essential because only 18% of the 98 taxa are present in all 4 of the most recent floras.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 25
    Publication Date: 2012-08-28
    Description: Forest management strategies and policies such as REDD (reduced emissions from deforestation and forest degradation) may have unintentional implications for forest sectors in countries not targeted by such policies. The success of a policy effort like REDD would result in a significant reduction in deforestation and forest degradation and an ensuing reduction in the supply of natural forest timber production within participating countries. This could in turn result in price increases, inducing a supply response outside project boundaries with possible implications for forest management as well as global carbon emissions. This paper reviews the literature to discern potential timber market implications for countries sourcing wood products from developing countries affected by REDD related conservation efforts. The literature reviewed shows varying degrees of market effects leakage—policy actions in one place creating incentives for third parties to increase timber harvesting elsewhere through the price mechanism—ranging from negligible to substantial. However, wood products in the studies reviewed are dealt with on quite an aggregated scale and are assumed to be more or less perfect substitutes for wood products outside conservation effort boundaries. The review suggests that a thorough mapping of the end-uses of tropical timber is needed to comprehensively analyze impacts on wood-product markets in regions such as Europe from conservation efforts in tropical developing countries. The types of tropical timber expected to be affected, in which applications they are used, which are the most likely substitutes and where they would be sourced, are issues that, along with empirical analysis of supply and demand price elasticities and degree of substitutability, should be investigated when assessing the overall effectiveness of REDD.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 26
    Publication Date: 2012-08-28
    Description: Understanding the spatial pattern of ecosystem services is important for effective environmental policy and decision-making. In this study, we use a geospatial decision-support tool (Marxan) to identify conservation priorities for habitat and a suite of ecosystem services (storage carbon, soil retention and water yield) in the Upper Paraná Atlantic Forest from Misiones, Argentina—an area of global conservation priority. Using these results, we then evaluate the efficiency of existing protected areas in conserving both habitat and ecosystem services. Selected areas for conserving habitat had an overlap of carbon and soil ecosystem services. Yet, selected areas for water yield did not have this overlap. Furthermore, selected areas with relatively high overlap of ecosystem services tended to be inside protected areas; however, other important areas for ecosystem services (i.e., central highlands) do not have legal protection, revealing the importance of enforcing existing environmental regulations in these areas.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 27
    Publication Date: 2012-09-04
    Description: Although the integration of sensor-based information into analysis and decision making has been a research topic for many years, semantic interoperability has not yet been reached. The advent of user-generated content for the geospatial domain, Volunteered Geographic Information (VGI), makes it even more difficult to establish semantic integration. This paper proposes a novel approach to integrating conventional sensor information and VGI, which is exploited in the context of detecting forest fires. In contrast to common logic-based semantic descriptions, we present a formal system using algebraic specifications to unambiguously describe the processing steps from natural phenomena to value-added information. A generic ontology of observations is extended and profiled for forest fire detection in order to illustrate how the sensing process, and transformations between heterogeneous sensing systems, can be represented as mathematical functions and grouped into abstract data types. We discuss the required ontological commitments and a possible generalization.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 28
    Publication Date: 2012-08-28
    Description: Being familiar with all the benefits of e-Health and the strategic plan for the Slovenian health sector’s informatization, Telekom Slovenia and the Faculty of Medicine from the University of Maribor, along with other partners, have initiated an e-Health project. The project group is developing various e-Health services that are based on modern ICT (information and communications technology) solutions and will be available on several screens. In order to meet the users’ needs and expectations and, consequently, achieve the high acceptance of e-Health services, the user-centered design (UCD) approach was employed in the e-Health project. However, during the research it was found that conventional UCD methods are not completely appropriate for older adults: the target population of the e-Health services. That is why the selected UCD methods were modified and adapted for older adults. The modified UCD methods used in the research study are presented in this paper. Using the results of the adapted UCD methods, a prototype for a service named MedReminder was developed. The prototype was evaluated by a group of 12 study participants. The study participants evaluated the MedReminder service as acceptable with a good potential for a high adoption rate among its target population, i.e., older adults.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
    Published by MDPI Publishing
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  • 29
    Publication Date: 2012-08-31
    Description: This paper describes the results of a collaborative effort that has reconciled the Open Annotation Collaboration (OAC) ontology and the Annotation Ontology (AO) to produce a merged data model [the Open Annotation (OA) data model] to describe Web-based annotations—and hence facilitate the discovery, sharing and re-use of such annotations. Using a number of case studies that include digital scholarly editing, 3D museum artifacts and sensor data streams, we evaluate the OA model’s capabilities. We also describe our implementation of an online annotation server that supports the storage, search and retrieval of OA-compliant annotations across multiple applications and disciplines. Finally we discuss outstanding problem issues associated with the OA ontology, and the impact that certain design decisions have had on the efficient storage, indexing, search and retrieval of complex structured annotations.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 30
    Publication Date: 2012-08-23
    Description: An algorithm that forecasts volcanic activity using an event tree decision making framework and logistic regression has been developed, characterized, and validated. The suite of empirical models that drive the system were derived from a sparse and geographically diverse dataset comprised of source modeling results, volcano monitoring data, and historic information from analog volcanoes. Bootstrapping techniques were applied to the training dataset to allow for the estimation of robust logistic model coefficients. Probabilities generated from the logistic models increase with positive modeling results, escalating seismicity, and rising eruption frequency. Cross validation yielded a series of receiver operating characteristic curves with areas ranging between 0.78 and 0.81, indicating that the algorithm has good forecasting capabilities. Our results suggest that the logistic models are highly transportable and can compete with, and in some cases outperform, non-transportable empirical models trained with site specific information.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 31
    Publication Date: 2012-08-22
    Description: Site index (SI) curves for H20 (dominant height at 20 years total age) were constructed for hybrid larch (Larix × eurolepis Henry) growing in 26 stands on former farmland in southern and central Sweden (Latitude 56–60° N.). The mean total age of the stands was 23 ± 10 (range 17–49) years; the mean diameter at breast height (ob) was 16 (7–34) cm; the mean height was 14 (8–29) m; and the stands had a mean density of 993 (266–2195) stems ha−1. A model derived by Cieszewski (2001) performed best for the data. The model explained 99% of the observed variation in height development. No apparent bias across the range of predicted site indices was found. SI was examined in relation to soil types. Multiple samples were available for three soil types: light clay, medium clay and till. There were no significant differences between these soil types with respect to the choice of SI curve.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 32
    Publication Date: 2012-08-21
    Description: In this article, key points are discussed concerning knowledge representation for clinical decision support systems in the domain of physical medicine and rehabilitation. Information models, classifications and terminologies, such as the “virtual medical record” (vMR), the “international classification of functioning, disability and health” (ICF), the “international classification of diseases” (ICD) and the “systematized nomenclature of medicine—clinical terms” (SNOMED CT), are used for knowledge integration and reasoning. A system is described that supports the measuring of functioning status, diversity, prognosis and similarity between patients in the post-acute stage, thus helping health professionals’ prescription of recommendations.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 33
    Publication Date: 2012-06-16
    Description: The main objective of this paper is to focus on how an integrated system based on Information Communication Technology (ICT) and face-to-face communication can increase participation in order to have a positive effect on quality of life, plans and decisions, and to discuss the many benefits which web-based public participation can bring to the planning process through a set of improvements to relations, quality and structure of cities in general and in this case example specifically. With the development of a transparent support system for collaborative decision-making processes, it is possible to identify a strategy for addressing gaps to reach collaborative decisions.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 34
    Publication Date: 2012-06-20
    Description: Eastern forests of the US are valued both as a carbon sink and a wood resource. The amount of biomass that can be harvested sustainably from this biome for bioenergy without compromising the carbon sink is uncertain. Using past literature and previously validated models, we assessed four scenarios of biomass harvest in the eastern US: partial harvests of mixed hardwood forests, pine plantation management, short-rotation woody cropping systems, and forest residue removal. We also estimated the amount and location of abandoned agricultural lands in the eastern US that could be used for biomass production. Greater carbon storage was estimated to result from partial harvests and residue removals than from plantation management and short-rotation cropping. If woody feedstocks were cultivated with a combination of intensive management on abandoned lands and partial harvests of standing forest, we estimate that roughly 176 Tg biomass y−1 (~330,000 GWh or ~16 billion gallons of ethanol) could be produced sustainably from the temperate forest biome of the eastern US. This biomass could offset up to ~63 Tg C y−1 that are emitted from fossil fuels used for heat and power generation while maintaining a terrestrial C sink of ~8 Tg C y−1.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 35
    Publication Date: 2012-06-20
    Description: In 2002, the Biscuit Wildfire burned a portion of the previously established, replicated conifer unthinned and thinned experimental units of the Siskiyou Long-Term Ecosystem Productivity (LTEP) experiment, southwest Oregon. Charcoal C in pre and post-fire O horizon and mineral soil was quantified by physical separation and a peroxide-acid digestion method. The abrupt, short-term fire event caused O horizon charcoal C to increase by a factor of ten to 〉200 kg C ha−1. The thinned wildfire treatment produced less charcoal C than unthinned wildfire and thinned prescribed fire treatments. The charcoal formation rate was 1 to 8% of woody fuels consumed, and this percentage was negatively related to woody fuels consumed, resulting in less charcoal formation with greater fire severity. Charcoal C averaged 2000 kg ha−1 in 0–3 cm mineral soil and may have decreased as a result of fire, coincident with convective or erosive loss of mineral soil. Charcoal C in 3–15 cm mineral soil was stable at 5500 kg C ha−1. Long-term soil C sequestration in the Siskiyou LTEP soils is greatly influenced by the contribution of charcoal C, which makes up 20% of mineral soil organic C. This research reiterates the importance of fire to soil C in a southwestern Oregon coniferous forest ecosystem.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 36
    Publication Date: 2012-07-25
    Description: We investigated the sprouting capacity of poplar stumps in ten 8–21-year old stands growing on former farmland in Sweden situated between 55°N and 60°N. Seven of the stands were planted with the clone OP-42 (Populus maximowiczii Henry × Populus trichocarpa Torr. and Gray), one with black cottonwood (Populus trichocarpa Torr. and Gray) and two with unidentified clones. The poplars’ mean age was 17 years (range 8–21); six of the stands were growing on clay soils, two on tills and two on loam. The studied sprouts were 1–7 years old. Stump sprouting was observed in all studied stands. The number of sprouts per living stump decreased as sprout age increased. The mean dry mass of all sprouts stump−1 was 16.1 ± 14.0 (range 3.3–37.2) kg. A biomass equation was constructed for estimating sprout biomass from the sprouts’ diameter at 10 cm above the ground (D10). The mean total sprout weight per hectare for sprouts amounted to 16.9 ± 14.6 (range 1.2–41.3) tons ha−1 when calculated for the actual living stumps in the studied areas.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 37
    Publication Date: 2012-07-17
    Description: This paper considers the impact of Stuxnet on cyber-attacks and cyber-defense. It first reviews trends in cyber-weapons and how Stuxnet fits into these trends. Because Stuxnet targeted an industrial control system in order to wreak physical damage, the focus is on weapons that target systems of that type and produce physical effects. The paper then examines the impact of Stuxnet on various domains of action where cyber-attacks play a role, including state-level conflict, terrorism, activism, crime, and pranks. For each domain, it considers the potential for new types of cyber-attacks, especially attacks against industrial control systems, and whether such attacks would be consistent with other trends in the domain. Finally, the paper considers the impact of Stuxnet on cyber-defense.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 38
    Publication Date: 2012-07-25
    Description: Biological activity and the physical environment regulate greenhouse gas fluxes (CH4, N2O and NO) from upland soils. Wildfires are known to alter these factors such that we collected daily weather records, fire return intervals, or specific fire years, and soil data of four specific sites along the Colorado Front Range. These data were used as primary inputs into DAYCENT. In this paper we test the ability of DAYCENT to simulate four forested sites in this area and to address two objectives: (1) to evaluate the short-term influence of fire on trace gas fluxes from burned landscapes; and (2) to compare trace gas fluxes among locations and between pre-/post- fire suppression. The model simulations indicate that CH4 oxidation is relatively unaffected by wildfire. In contrast, gross nitrification rates were reduced by 13.5–37.1% during the fire suppression period. At two of the sites, we calculated increases in gross nitrification rates (〉100%), and N2O and NO fluxes during the year of fire relative to the year before a fire. Simulated fire suppression exhibited decreased gross nitrification rates presumably as nitrogen is immobilized. This finding concurs with other studies that highlight the importance of forest fires to maintain soil nitrogen availability.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 39
    Publication Date: 2012-09-08
    Description: Distribution models of invasive plants are very useful tools for conservation management. There are challenges in modeling expanding populations, especially in a dynamic environment, and when data are limited. In this paper, predictive habitat models were assessed for three invasive plant species, at differing levels of occurrence, using two different habitat modeling techniques: logistic regression and maximum entropy. The influence of disturbance, spatial and temporal heterogeneity, and other landscape characteristics is assessed by creating regional level models based on occurrence records from the USDA Forest Service’s Forest Inventory and Analysis database. Logistic regression and maximum entropy models were assessed independently. Ensemble models were developed to combine the predictions of the two analysis approaches to obtain a more robust prediction estimate. All species had strong models with Area Under the receiver operator Curve (AUC) of 〉0.75. The species with the highest occurrence, Ligustrum spp., had the greatest agreement between the models (93%). Lolium arundinaceum had the most disagreement between models at 33% and the lowest AUC values. Overall, the strength of integrative modeling in assessing and understanding habitat modeling was demonstrated.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 40
    Publication Date: 2012-09-12
    Description: Regulations in the Building Industry are becoming increasingly complex and involve more than one technical area, covering products, components and project implementations. They also play an important role in ensuring the quality of a building, and to minimize its environmental impact. Control or conformance checking are becoming more complex every day, not only for industrials, but also for organizations charged with assessing the conformity of new products or processes. This paper will detail the approach taken by the CSTB (Centre Scientifique et Technique du Bâtiment) in order to simplify this conformance control task. The approach and the proposed solutions are based on semantic web technologies. For this purpose, we first establish a domain-ontology, which defines the main concepts involved and the relationships, including one based on OWL (Web Ontology Language) [1]. We rely on SBVR (Semantics of Business Vocabulary and Business Rules) [2] and SPARQL (SPARQL Protocol and RDF Query Language) [3] to reformulate the regulatory requirements written in natural language, respectively, in a controlled and formal language. We then structure our control process based on expert practices. Each elementary control step is defined as a SPARQL query and assembled into complex control processes “on demand”, according to the component tested and its semantic definition. Finally, we represent in RDF (Resource Description Framework) [4] the association between the SBVR rules and SPARQL queries representing the same regulatory constraints.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 41
    Publication Date: 2012-09-11
    Description: Species-specific and mixed-species volume and above ground biomass allometric equations were developed for 15 indigenous tree species and four tree fern species in New Zealand. A mixed-species tree equation based on breast height diameter (DBH) and tree height (H) provided acceptable estimates of stem plus branch (〉10 cm in diameter over bark) volume, which was multiplied by live tree density to estimate dry matter. For dead standing spars, DBH, estimated original height, actual spar height and compatible volume/taper functions provided estimates of dead stem volume, which was multiplied by live tree density and a density modifier based on log decay class from field assessments to estimate dry matter. Live tree density was estimated using ratio estimators. Ratio estimators were based on biomass sample trees, and utilized density data from outerwood basic density surveys which were available for 35 tree species sampled throughout New Zealand. Foliage and branch ( 〈 10 cm in diameter over bark) dry matter were estimated directly from tree DBH. Tree fern above ground dry matter was estimated using allometric equations based on DBH and H. Due to insufficient data, below ground carbon for trees was estimated using the default IPCC root/shoot ratio of 25%, but for tree ferns it was estimated using measured root/shoot ratios which averaged 20%.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 42
    Publication Date: 2012-09-08
    Description: The Glentress Trial Area is an extensive research area in southern Scotland of 117 ha where a long-term trial of the transformation of even-aged plantations to continuous cover has been in progress since 1952. During the assessment of permanent sample plots in 1990 information on the species and spatial position of saplings (trees taller than 1.3 m with a diameter at breast height of 〈 7 cm) was recorded. This provided a unique opportunity to investigate the long-term survival of saplings during the transformation process when the Trial Area was reassessed in 2009. The main finding was that 37% of saplings survived the 19-year period and the majority developed into trees (≥7 cm diameter at breast height). There was considerable variation between species, the lowest survival of saplings was European larch (Larix decidua Mill.) (13%) and the highest European beech (Fagus sylvatica L.) (55%); however differences between species were not significant. There were, however, significant differences between the six management areas with three with high sapling survival (55% to 61%) but others much lower (27% to 32%). If this result is confirmed by other studies, covering a broader range of sites, management guidance that assumes 90% survival will need to be revised.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 43
    Publication Date: 2012-09-13
    Description: Invasive plant species have long been known to cause extensive damage, both economically and ecologically, to native ecosystems. They have historically been introduced by the public, both intentional and not, for a variety of reasons. Many of the woody shrubs, such as Lonicera maackii and Rosa multiflora were introduced for wildlife cover, forage, and ornamental value. These invasives have quickly out-competed native flora, in many cases drastically impacting and changing the environment they inhabit. In this review, chosen species characteristics have been described, their pathway to invasion explained, and their impacts to native wildlife highlighted. Based on a review of the scientific literature, we determined that not all effects by invasive plants are negative. Many positive impacts can be seen throughout the literature, such as native frogs utilizing Microstegium vimineum for cover and nesting habitat. However, some important invasive plant species were not included in this review due to a lack of literature on the subject of the effects on fauna. While much is known about their economic impact and the impact on native plant species, additional work needs to be done in the field of wildlife research to determine current impacts and future implications of non-native, invasive plants on native fauna.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 44
    Publication Date: 2012-08-18
    Description: To quantify the climate change impacts of forestry and forest management options, we must consider the entire forestry system: the carbon dynamics of the forest, the life cycle of harvested wood products, and the substitution benefit of using biomass and wood products compared to more greenhouse gas intensive options. This paper presents modelled estimates of the greenhouse gas balance of two key native forest areas managed for production in New South Wales for a period of 200 years, and compares it to the option of managing for conservation only. These two case studies show that forests managed for production provide the greatest ongoing greenhouse gas benefits, with long-term carbon storage in products, and product substitution benefits critical to the outcome. Thus native forests could play a significant part in climate change mitigation, particularly when sustainably managed for production of wood and non-wood products including biomass for bioenergy. The potential role of production forestry in mitigating climate change, though substantial, has been largely overlooked in recent Australian climate change policy.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 45
    Publication Date: 2012-08-21
    Description: In dry western Unites States forests where past resource management has altered the ecological role of fire and stand characteristics alike, mechanical thinning and prescribed burning are commonly applied in wildfire hazard abatement. The reduced surface fuel loads and stand structures resulting from fuels modifications are temporary, yet few studies have assessed the lifespan of treatment effects. We sampled forest fuels and vegetation following fuels reduction in a chronosequence of time since treatment in the northern Sierra Nevada and southern Cascade regions of California. Treatments altered overstory characteristics including stand density, basal area, and species composition. These effects were still present on the oldest treatment sites (8–15 years post-treatment). Other stand characteristics, particularly timelag fuel loads, seedling density, and shrub cover, exhibited substantial variability, and differences between treatment age classes and between treatment and control groups were not statistically significant.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 46
    Publication Date: 2012-08-21
    Description: Longleaf pine has been classified as very shade intolerant but leaf physiological plasticity to light is not well understood, especially given longleaf pine’s persistent seedling grass stage. We examined leaf morphological and physiological responses to light in one-year-old grass-stage seedlings and young trees ranging in height from 4.6 m to 6.3 m to test the hypothesis that young longleaf pine would demonstrate leaf phenotypic plasticity to light environment. Seedlings were grown in a greenhouse under ambient levels of photosynthetically active radiation (PAR) or a 50% reduction in ambient PAR and whole branches of trees were shaded to provide a 50% reduction in ambient PAR. In seedlings, shading reduced leaf mass per unit area (LMA), the light compensation point, and leaf dark respiration (RD), and increased the ratio of light-saturated photosynthesis to RD and chlorophyll b and total chlorophyll expressed per unit leaf dry weight. In trees, shading reduced LMA, increased chlorophyll a, chlorophyll b and total chlorophyll on a leaf dry weight basis, and increased allocation of total foliar nitrogen to chlorophyll nitrogen. Changes in leaf morphological and physiological traits indicate a degree of shade tolerance that may have implications for even and uneven-aged management of longleaf pine.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 47
    Publication Date: 2012-06-20
    Description: Smart homes are homes with technologically advanced systems to enable domestic task automation, easier communication, and higher security. As an enabler of health and well-being enhancement, smart homes have been geared to accommodate people with special needs, especially older people. This paper examines the concept of “smart home” in a technologically driven society and its multi-functional contribution to the enhancement of older people’s lives. Discussion then focuses on the challenges in the use of smart homes among older people such as accessibility and ethical issues. Finally, some implications and recommendations are provided.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 48
    Publication Date: 2012-06-21
    Description: This paper compares carbon (C) and nutrient contents in soils (Alfisols derived from andesite), forest floor and vegetation in a former fire (1960) and an adjacent forest in the Sagehen Watershed in the Sierra Nevada Mountains of California. Soils from the former fire (now occupied predominantly by Ceanothus velutinus, a nitrogen-fixing shrub) had significantly lower contents of extractable SO42− and P (both Bray and bicarbonate) but significantly greater contents of exchangeable Ca2+ than the adjacent forested site (dominated by Pinus jeffreyii). 15N data suggested that N fixation had occurred in the former fire site, but N contents did not differ between the two sites. O horizon C and nutrient contents did not differ between the two sites, but vegetation C and nutrient contents were significantly greater in the forested than former fire site. These results contrast with those from a nearby, previous study at Little Valley Nevada, also dominated by P. jeffreyii growing on a different soil type (Entisols derived from granite). In the Little Valley study, soil C, N, Ca2+, Mg2+, and K+ contents within the former fire (1981, now also occupied predominantly by Ceanothus velutinus) were greater than in the adjacent forest (Pinus jeffreyii) but soil extractable P contents either did not differ or were greater in the former fire. We conclude that soil parent material is an indirect but strong mediator of the effects of post-fire vegetation on soils in this region, especially with respect to soil P changes, which vary substantially between andesite- and granite-derived soils.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 49
    Publication Date: 2012-07-05
    Description: Fixed and wireless networks are increasingly converging towards common connectivity with IP-based core networks. Providing effective end-to-end resource and QoS management in such complex heterogeneous converged network scenarios requires unified, adaptive and scalable solutions to integrate and co-ordinate diverse QoS mechanisms of different access technologies with IP-based QoS. Policy-Based Network Management (PBNM) is one approach that could be employed to address this challenge. Hence, a policy-based framework for end-to-end QoS management in converged networks, CNQF (Converged Networks QoS Management Framework) has been proposed within our project. In this paper, the CNQF architecture, a Java implementation of its prototype and experimental validation of key elements are discussed. We then present a fuzzy-based CNQF resource management approach and study the performance of our implementation with real traffic flows on an experimental testbed. The results demonstrate the efficacy of our resource-adaptive approach for practical PBNM systems.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 50
    Publication Date: 2012-07-07
    Description: Many scientists and managers have an interest in describing the environment following a fire to understand the effects on soil productivity, vegetation growth, and wildlife habitat, but little research has focused on the scientific rationale for classifying the post-fire environment. We developed an empirically-grounded soil post-fire index (PFI) based on available science and ecological thresholds. Using over 50 literature sources, we identified a minimum of five broad categories of post-fire outcomes: (a) unburned, (b) abundant surface organic matter (〉85% surface organic matter), (c) moderate amount of surface organic matter (≥40 through 85%), (d) small amounts of surface organic matter (
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 51
    Publication Date: 2012-07-05
    Description: As the costs of healthcare services rise and healthcare professionals are becoming scarce and hard to find, it is imminent that healthcare organizations consider adopting health information technology (HIT) systems. HIT allows health organizations to streamline many of their processes and provide services in a more efficient and cost-effective manner. The latest technological trends such as Cloud Computing (CC) provide a strong infrastructure and offer a true enabler for HIT services over the Internet. This can be achieved on a pay-as-you-use model of the “e-Health Cloud” to help the healthcare industry cope with current and future demands yet keeping their costs to a minimum. Despite its great potential, HIT as a CC model has not been addressed extensively in the literature. There are no apparent frameworks which clearly encompass all viable schemes and interrelationships between HIT and CC. Therefore, analyzing and comparing the effectiveness of such schemes is important. In this paper we introduce the concept of “e-Health Cloud” highlighting many of its constituents and proposing building an e-health environment and elucidating many of the challenges confronting the success of the e-Health Cloud. We will also discuss different possible solutions to address challenges such as security and privacy.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 52
    Publication Date: 2012-07-07
    Description: Based on theoretical underpinnings and an empirical review of forest laws and regulations of selected countries throughout the Americas, we examine key components of natural forest management and how they are addressed in the legal frameworks of Argentina, Brazil, Chile, Costa Rica, Guatemala, Nicaragua, Paraguay, Uruguay, and the U.S. We consider forest policy directives in terms of legislative, planning, operational, environmental/ecological, social, and economic aspects and classify them by the type of policy obligation: (1) non-discretionary laws or rules; or (2) discretionary, voluntary directives; and, further, by the type of policy approach: (1) a specific technology or practice required or recommended; (2) a process or system requirement or recommendation; or (3) a performance or outcome based requirement or recommendation. Protection of at-risk species and riparian buffers are required in all countries and include specific prescriptions in most; forest management planning and secure, legal land title or tenancy are commonly required; and mandatory processes to protect soil and water quality are customary. Less common requirements include forest monitoring and social and economic aspects, and, when in place, they are usually voluntary. Implications for improved policies to achieve sustainable forest management (SFM) are discussed.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 53
    Publication Date: 2012-06-21
    Description: As part of its efforts to curb greenhouse gas emissions, China has committed to expanding the country’s forest area by 40 million hectares and stocking volume by 1.3 billion m3 from 2006 to 2020. Our analysis suggests that it is very likely that China will realize its goal of forest area expansion; but the target of volume increase represents only a modest gain, which may absorb about 2% of its cumulative carbon emissions. However, China’s forests can be a much more significant carbon sequester and ecosystem services provider if its forest growth rate and stocking level are boosted by improving forest quality and productivity. To that end, however, the civil cultural practices and governance structure must be transformed.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 54
    Publication Date: 2012-06-21
    Description: Forest carbon stocks—both in terms of the standing biomass and the soil organic carbon (OC)—were monitored in the mangrove plantation reforested from an abandoned shrimp pond for the 10 years following land excavation. Excavation to a level of 25 cm below the existing ground level increased the inundation time of tidal water from 463 to 7,597 hours per year, resulting in a significant increase of survival/growth rates for planted mangrove species, Rhizophora mucronata (RM) and Bruguiera cylindrica (BC), and of carbon stocks as well. RM showed high rates of standing biomass accumulation with 98.7 ton/ha while 28.8 ton/ha for BC was measured over 10 years in the excavated area. In contrast, the unexcavated area showed low rates of biomass accumulation, 1.04 ton/ha for RM and 0.53 ton/ha for BC in the same period. The excavated area recorded a twofold increase of soil OC in the upper 5 cm of the surface soil from 71.8 to 154.8 ton/ha in 10 years, however it decreased to 68.3 ton/ha in the unexcavated area where soil OC is susceptible to decomposition. These results imply that the potential of carbon sinks in reforested land from abandoned areas cannot be developed unless hydraulic conditions are properly recovered. The fast growing species Avicennia marina (AM) grew quickly for the first two years after colonization but its growth slowed down afterwards, showing a limited ability of carbon capture.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 55
    Publication Date: 2012-06-28
    Description: We have collected five papers describing different aspects of web services and cloud computing. Cloud computing is the next stage of application interoperability and it is a logical extension of web services, both approaches being a variety of Service-Oriented Architecture. The papers cover security, migration, certification, and application development. Together, these papers provide a useful panorama of some of the issues of these two technologies.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 56
    Publication Date: 2012-06-07
    Description: Routing services for outdoor areas are omnipresent and also three-dimensional (3D) visualization is quite common within this area. Recent research efforts are now trying to adapt well known outdoor routing services to complex indoor environments. However, most of the current indoor routing systems only focus on two-dimensional visualization, thus only one level can be depicted. Especially multi-level routes therefore lack visualization. Also, most of the (few) existing 3D indoor routing services utilize proprietary software or plugins, thus a widespread accessibility for those services by using common computers or mobile devices is not feasible. Therefore this paper describes the development of a web-based 3D routing system based on a new HTML extension. The visualization of rooms as well as the computed routes is realized with XML3D. Since this emerging technology is based on WebGL and will likely be integrated into the HTML5 standard, the developed system is already compatible with most common browsers such as Google Chrome or Firefox. Another key difference of the approach presented in this paper is that all utilized data is actually crowdsourced geodata from OpenStreetMap (OSM). Such data is collaboratively collected by both amateurs and professionals and can be used at no charge under the Open Data Commons Open Database License (ODbL). Our research combines user-generated geo content of the Web 2.0 with future Internet technology for the provision of a ubiquitously accessible 3D indoor routing application.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 57
    Publication Date: 2012-06-07
    Description: Longleaf pine (Pinus palustris) ecosystems have been reduced dramatically throughout their range. Prescribed burning is considered the best way to restore and maintain plant communities associated with longleaf pine, but little is known about its effects on coarse woody debris and associated organisms. We conducted a 5-year study on the Osceola National Forest in northeastern Florida to determine how dormant-season prescribed burns at different frequencies (annual, biennial, quadrennial or unburned) applied over a 40-year period affected coarse woody debris volume, decomposition and nitrogen content, and subterranean termite (Reticulitermes spp.) activity. Burn frequency had no effect on standing dead tree or log volumes. However, freshly cut longleaf pine logs placed in the plots for four years lost significantly less mass in annually burned plots than in unburned plots. The annual exponential decay coefficient estimate from all logs was 0.14 yr−1 (SE = 0.01), with the estimated times for 50 and 95% loss being 5 and 21.4 years, respectively. Termite presence was unaffected by frequent burning, suggesting they were able to survive the fires underground or within wood, and that winter burning did not deplete their food resources.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 58
    Publication Date: 2012-06-05
    Description: Enhancement of forest growth through silvicultural modification of stand density is one strategy for increasing carbon (C) sequestration. Using the Fire and Fuels Extension of the Forest Vegetation Simulator, the effects of even-aged, uneven-aged and no-action management scenarios on C sequestration in a southern Appalachian red spruce-Fraser fir forest were modeled. We explicitly considered C stored in standing forest stocks and the fate of forest products derived from harvesting. Over a 100-year simulation period the even-aged scenario (250 Mg C ha−1) outperformed the no-action scenario (241 Mg C ha−1) in total carbon (TC) sequestered. The uneven-aged scenario approached 220 Mg C ha−1, but did not outperform the no-action scenario within the simulation period. While the average annual change in C (AAC) of the no-action scenario approached zero, or carbon neutral, during the simulation, both the even-aged and uneven-aged scenarios surpassed the no-action by year 30 and maintained positive AAC throughout the 100-year simulation. This study demonstrates that silvicultural treatment of forest stands can increase potential C storage, but that careful consideration of: (1) accounting method (i.e., TC versus AAC); (2) fate of harvested products and; (3) length of the planning horizon (e.g., 100 years) will strongly influence the evaluation of C sequestration.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 59
    Publication Date: 2012-04-19
    Description: Today there is an increasing demand for biomass for use in energy production. In this study we investigated stumps and roots from six poplar (Populus sp.) stands growing on former farmland in Sweden, situated between latitudes 55 and 60°N. The mean age of the poplar was 20 years (range 16–23), the mean stand density 1151 stems ha−1 (range 361–3279), and the mean diameter at breast height (over bark) 288 mm (range 81–574). All poplar stands were on clay soils (light and medium clay and light clay tills).The mean dry mass weight of the 72 excavated stumps was 45 ± 39 kg (range 1–185), with the roots ≥ 50 mm weighing 14 ± 16 kg (range 0.2–87). Dry mean stump weight represented 21% (by dry weight) of the stem. The mean total dry weight per hectare for stumps amounted to 34.9 ± 21.8 (range 12.9–66.9) tons and the equivalent value for roots was 12.0 ± 9.6 (range 4.7–10.9) tons. The excavation of below-ground biomass can either focus on the stump or the stump and parts of the root system. Depending on the combination of soil type and soil moisture the weight of soil adhering to stumps and the cleaning requirements will vary.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 60
    Publication Date: 2012-04-21
    Description: An important aspect for the acceptance of Service-Oriented Architectures is having convenient ways to help designers build secure applications. Numerous standards define ways to apply security in web services. However, these standards are rather complex and sometimes overlap, which makes them hard to use and may produce inconsistencies. Representing them as patterns makes them easier to understand, to compare to other patterns, to discover inconsistencies, and to use them to build secure web services applications. Security patterns abstract the key aspects of a security mechanism and can thus be applied by non-experts. We survey here our work on security patterns for web services and their standards and we put them in perspective with respect to each other and to more fundamental patterns. We also consider other patterns for web services security. All the patterns described here have been previously published, we only show here one of them in detail as an illustration of our style for writing patterns. Our main purpose here is to enumerate them, show their use, and show how they relate to each other.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 61
    Publication Date: 2012-04-20
    Description: The infrastructure of large networks is broken down into areas that have a common security policy called a domain. Security within a domain is commonly implemented at all nodes. However this can have a negative effect on performance since it introduces a delay associated with packet filtering. When Access Control Lists (ACLs) are used within a router for this purpose then a significant overhead is introduced associated with this process. It is likely that identical checks are made at multiple points within a domain prior to a packet reaching its destination. Therefore by eliminating ACLs within a domain by modifying the ingress/egress points with equivalent functionality an improvement in the overall performance can be obtained. This paper considers the effect of the delays when using router operating systems offering different levels of functionality. It considers factors which contribute to the delay particularly due to ACLs and by using theoretical principles modified by practical calculation a model is created. Additionally this paper provides an example of an optimized solution which reduces the delay through network routers by distributing the security rules to the ingress/egress points of the domain without affecting the security policy.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 62
    Publication Date: 2012-04-20
    Description: This paper investigates the properties of central or core political blogs. They can be located as clusters of blogs whose members have many incoming links. Other blogs form clouds around them in the sense that they link the core blogs. A case study records Greek political blogs and their incoming links reported through their blogrolls. The adjacency matrix from the blogs’ social network is analyzed and clusters are located. Three of them, those with the larger numbers of incoming links, may be considered to be central. Next, four measures of influence are used to test the influence of the central blogs. The findings suggest that there are many kinds of central blogs, influential and non-influential, and high influence does not always involve high hyperlinking.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 63
    Publication Date: 2012-06-05
    Description: The documented role of United States forests in sequestering carbon, the relatively low cost of forest-based mitigation, and the many co-benefits of increasing forest carbon stocks all contribute to the ongoing trend in the establishment of forest-based carbon offset projects. We present a broad analysis of forest inventory data using site quality indicators to provide guidance to managers planning land acquisition for forest-based greenhouse gas mitigation projects. Specifically, we summarize two condition class indicators of site productivity within the FIA forest inventory database—physclcd and siteclcd—as they relate to current aboveground live tree carbon stocks. Average carbon density is higher on more productive sites, but compared to the overall variability among sites, the differences are relatively small for all but the highest and lowest site classes. Some minor differences in eastern- versus western-forests were apparent in terms of how carbon on the least productive sites differed from most other forest land over time. Overall results suggest that xeric sites in most regions as well as sites that correspond to the lowest, non-productive classifications of forest land should preferentially not be used forestry-based greenhouse gas mitigation projects, but all other forest areas appear to be suitable.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 64
    Publication Date: 2012-06-06
    Description: Volunteered Geographic Information (VGI) tools appear to enhance the possibilities offered by a collaborative approach to planning. The present paper analyzes both the results of experiences of the author and of those available in the literature, highlighting possible advantages and disadvantages. After a brief introduction to the meaning of e-democracy, the second part focuses on the role of ICT in collaborative planning, proceeding in the third part to an illustration of an initial panorama of knowledge gathered using ICT in such processes, while discussing criticisms and opportunities. The fourth part discusses the U-city paradigm as a driver of change in urban planning participation processes. Research perspectives are then outlined in the final part.
    Electronic ISSN: 1999-5903
    Topics: Computer Science
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  • 65
    Publication Date: 2012-05-03
    Description: Deduplication in storage systems has gained momentum recently for its capability in reducing data footprint. However, deduplication introduces challenges to storage management as storage objects (e.g., files) are no longer independent from each other due to content sharing between these storage objects. In this paper, we present a graph-based framework to address the challenges of storage management due to deduplication. Specifically, we model content sharing among storage objects by content sharing graphs (CSG), and apply graph-based algorithms to two real-world storage management use cases for deduplication-enabled storage systems. First, a quasi-linear algorithm was developed to partition deduplication domains with a minimal amount of deduplication loss (i.e., data replicated across partitioned domains) in commercial deduplication-enabled storage systems, whereas in general the partitioning problem is NP-complete. For a real-world trace of 3 TB data with 978 GB of removable duplicates, the proposed algorithm can partition the data into 15 balanced partitions with only 54 GB of deduplication loss, that is, a 5% deduplication loss. Second, a quick and accurate method to query the deduplicated size for a subset of objects in deduplicated storage systems was developed. For the same trace of 3 TB data, the optimized graph-based algorithm can complete the query in 2.6 s, which is less than 1% of that of the traditional algorithm based on the deduplication metadata.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 66
    Publication Date: 2012-05-03
    Description: This paper is a review which presents and explains the decomposition of graphs by clique minimal separators. The pace is leisurely, we give many examples and figures. Easy algorithms are provided to implement this decomposition. The historical and theoretical background is given, as well as sketches of proofs of the structural results involved.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 67
    Publication Date: 2012-05-03
    Description: In recent years, many tools have been proposed to reduce programming learning difficulties felt by many students. Our group has contributed to this effort through the development of several tools, such as VIP, SICAS, OOP-Anim, SICAS-COL and H-SICAS. Even though we had some positive results, the utilization of these tools doesn’t seem to significantly reduce weaker student’s difficulties. These students need stronger support to motivate them to get engaged in learning activities, inside and outside classroom. Nowadays, many technologies are available to create contexts that may help to accomplish this goal. We consider that a promising path goes through the integration of solutions. In this paper we analyze the features, strengths and weaknesses of the tools developed by our group. Based on these considerations we present a new environment, integrating different types of pedagogical approaches, resources, tools and technologies for programming learning support. With this environment, currently under development, it will be possible to review contents and lessons, based on video and screen captures. The support for collaborative tasks is another key point to improve and stimulate different models of teamwork. The platform will also allow the creation of various alternative models (learning objects) for the same subject, enabling personalized learning paths adapted to each student knowledge level, needs and preferential learning styles. The learning sequences will work as a study organizer, following a suitable taxonomy, according to student’s cognitive skills. Although the main goal of this environment is to support students with more difficulties, it will provide a set of resources supporting the learning of more advanced topics. Software engineering techniques and representations, object orientation and event programming are features that will be available in order to promote the learning progress of students.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 68
    Publication Date: 2012-05-03
    Description: Graph search algorithms have exploited graph extremities, such as the leaves of a tree and the simplicial vertices of a chordal graph. Recently, several well-known graph search algorithms have been collectively expressed as two generic algorithms called MLS and MLSM. In this paper, we investigate the properties of the vertex that is numbered 1 by MLS on a chordal graph and by MLSM on an arbitrary graph. We explain how this vertex is an extremity of the graph. Moreover, we show the remarkable property that the minimal separators included in the neighborhood of this vertex are totally ordered by inclusion.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 69
    Publication Date: 2012-05-03
    Description: Non-preemptive schedulers, despite their many discussed drawbacks, remain a very popular choice for practitioners of real-time and embedded systems. The non-preemptive ‘thrift’ cyclic scheduler—variations of which can be found in other application areas—has recently received considerable attention for the implementation of such embedded systems. A thrift scheduler provides a flexible and compact implementation model for periodic task sets with comparatively small overheads; additionally, it can overcome several of the problems associated with traditional ‘cyclic executives’. However, severe computational difficulties can still arise when designing schedules for non-trivial task sets. This paper is concerned with an optimization version of the offset-assignment problem, in which the objective is to assign task offsets such that the required CPU clock speed is minimized whilst ensuring that task overruns do not occur; it is known that the decision version of this problem is complete for Σ2p. The paper first considers the problemof candidate solution verification—itself strongly coNP-Complete—and a fast, exact algorithm for this problem is proposed; it is shown that for any fixed number of tasks, its execution time is polynomial. The paper then proposes two heuristic algorithms of pseudopolynomial complexity for solving the offset-assignment problem, and considers how redundant choices of offset combinations can be eliminated to help speed up the search. The performance of these algorithms is then experimentally evaluated, before conclusions are drawn.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 70
    Publication Date: 2012-05-03
    Description: Algorithm animations typically assist in educational tasks aimed simply at achieving understanding. Potentially, animations could assist in higher levels of cognition, such as the analysis level, but they usually fail in providing this support because they are not flexible or comprehensive enough. In particular, animations of recursion provided by educational systems hardly support the analysis of recursive algorithms. Here we show how to provide full support to the analysis of recursive algorithms. From a technical point of view, animations are enriched with interaction techniques inspired by the information visualization (InfoVis) field. Interaction tasks are presented in seven categories, and deal with both static visualizations and dynamic animations. All of these features are implemented in the SRec system, and visualizations generated by SRec are used to illustrate the article.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 71
    Publication Date: 2012-05-03
    Description: Techniques in image similarity can be used to improve the classification of breast cancer images. Breast cancer images in the mammogram modality have an abundance of non-cancerous structures that are similar to cancer, which make classification of images as containing cancer especially difficult to work with. Only the cancerous part of the image is relevant, so the techniques must learn to recognize cancer in noisy mammograms and extract features from that cancer to appropriately classify images. There are also many types or classes of cancer with different characteristics over which the system must work. Mammograms come in sets of four, two images of each breast, which enables comparison of the left and right breast images to help determine relevant features and remove irrelevant features. In this work, image feature clustering is done to reduce the noise and the feature space, and the results are used in a distance function that uses a learned threshold in order to produce a classification. The threshold parameter of the distance function is learned simultaneously with the underlying clustering and then integrated to produce an agglomeration that is relevant to the images. This technique can diagnose breast cancer more accurately than commercial systems and other published results.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 72
    Publication Date: 2012-05-03
    Description: This paper uses an ensemble of classifiers and active learning strategies to predict radiologists’ assessment of the nodules of the Lung Image Database Consortium (LIDC). In particular, the paper presents machine learning classifiers that model agreement among ratings in seven semantic characteristics: spiculation, lobulation, texture, sphericity, margin, subtlety, and malignancy. The ensemble of classifiers (which can be considered as a computer panel of experts) uses 64 image features of the nodules across four categories (shape, intensity, texture, and size) to predict semantic characteristics. The active learning begins the training phase with nodules on which radiologists’ semantic ratings agree, and incrementally learns how to classify nodules on which the radiologists do not agree. Using our proposed approach, the classification accuracy of the ensemble of classifiers is higher than the accuracy of a single classifier. In the long run, our proposed approach can be used to increase consistency among radiological interpretations by providing physicians a “second read”.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 73
    Publication Date: 2012-05-03
    Description: We consider grammar-based text compression with longest first substitution (LFS), where non-overlapping occurrences of a longest repeating factor of the input text are replaced by a new non-terminal symbol. We present the first linear-time algorithm for LFS. Our algorithm employs a new data structure called sparse lazy suffix trees. We also deal with a more sophisticated version of LFS, called LFS2, that allows better compression. The first linear-time algorithm for LFS2 is also presented.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 74
    Publication Date: 2012-05-03
    Description: Using Hidden Markov Models (HMMs) as a recognition framework for automatic classification of animal vocalizations has a number of benefits, including the ability to handle duration variability through nonlinear time alignment, the ability to incorporate complex language or recognition constraints, and easy extendibility to continuous recognition and detection domains. In this work, we apply HMMs to several different species and bioacoustic tasks using generalized spectral features that can be easily adjusted across species and HMM network topologies suited to each task. This experimental work includes a simple call type classification task using one HMM per vocalization for repertoire analysis of Asian elephants, a language-constrained song recognition task using syllable models as base units for ortolan bunting vocalizations, and a stress stimulus differentiation task in poultry vocalizations using a non-sequential model via a one-state HMM with Gaussian mixtures. Results show strong performance across all tasks and illustrate the flexibility of the HMM framework for a variety of species, vocalization types, and analysis tasks.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 75
    Publication Date: 2012-05-03
    Description: An adaptive mesh refinement strategy is proposed for local damage models that often arise from internal state variable based continuum damage models. The proposed algorithm employs both the finite element method and the finite difference method to integrate the equations of motion of a linear elastic material with simple isotropic microcracking. The challenges of this problem include the time integration of coupled partial differential equations with time-dependent coefficients, and the proper choice of solution spaces to yield a stable finite element formulation. Discontinuous elements are used for the representation of the damage field, as it is believed that this reduction in regularity is more consistent with the physical nature of evolving microcracking. The adaptive mesh refinement algorithm relies on custom refinement indicators, two of which are presented and compared. The two refinement indicators we explore are based on the time rate of change of the damage field and on the energy release rate, respectively, where the energy release rate measures the energy per unit volume available for damage to evolve. We observe the performance of the proposed algorithm and refinement indicators by comparing the predicted damage morphology on different meshes, hence judging the capability of the proposed technique to address, but not eliminate, the mesh dependency present in the solutions of the damage field.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 76
    Publication Date: 2012-05-03
    Description: The Encyclopedia of Algorithms provides a comprehensive set of solutions to important algorithmic problems for students and researchers, including high-impact solutions from the most recent decade. [...]
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 77
    Publication Date: 2012-05-03
    Description: Recently a Delaunay refinement algorithm has been proposed that can mesh piecewise smooth complexes which include polyhedra, smooth and piecewise smooth surfaces, and non-manifolds. However, this algorithm employs domain dependent numerical predicates, some of which could be computationally expensive and hard to implement. In this paper we develop a refinement strategy that eliminates these complicated domain dependent predicates. As a result we obtain a meshing algorithm that is practical and implementation-friendly.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 78
    Publication Date: 2012-05-03
    Description: We consider the problem of all-to-one selfish routing in the absence of a payment scheme in wireless sensor networks, where a natural model for cost is the power required to forward, referring to the resulting game as a Locally Minimum Cost Forwarding (LMCF). Our objective is to characterize equilibria and their global costs in terms of stretch and diameter, in particular finding incentive compatible algorithms that are also close to globally optimal. We find that although social costs for equilibria of LMCF exhibit arbitrarily bad worst-case bounds and computational infeasibility of reaching optimal equilibria, there exist greedy and local incentive compatible heuristics achieving near-optimal global costs.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 79
    Publication Date: 2012-05-03
    Description: The emergence of novel sensing elements, computing nodes, wireless communication and integration technology provides unprecedented possibilities for the design and application of intelligent systems. Each new application system must be designed from scratch, employing sophisticated methods ranging from conventional signal processing to computational intelligence. Currently, a significant part of this overall algorithmic chain of the computational system model still has to be assembled manually by experienced designers in a time and labor consuming process. In this research work, this challenge is picked up and a methodology and algorithms for automated design of intelligent integrated and resource-aware multi-sensor systems employing multi-objective evolutionary computation are introduced. The proposed methodology tackles the challenge of rapid-prototyping of such systems under realization constraints and, additionally, includes features of system instance specific self-correction for sustained operation of a large volume and in a dynamically changing environment. The extension of these concepts to the reconfigurable hardware platform renders so called self-x sensor systems, which stands, e.g., for self-monitoring, -calibrating, -trimming, and -repairing/-healing systems. Selected experimental results prove the applicability and effectiveness of our proposed methodology and emerging tool. By our approach, competitive results were achieved with regard to classification accuracy, flexibility, and design speed under additional design constraints.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 80
    Publication Date: 2012-05-03
    Description: The fluorescence properties of tryptophan residues are sensitive to the microenvironment of fluorophores in proteins. Therefore, fluorescence characteristics are widely used to study structural transitions in proteins. However, the decoding of the structural information from spectroscopic data is challenging. Here we present a review of approaches developed for the decomposition of multi-component protein tryptophan fluorescence spectra and correlation of these spectral parameters with protein structural properties.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 81
    Publication Date: 2012-05-03
    Description: The automated approximation of solutions to differential equations which involve discontinuities across evolving surfaces is addressed. Finite element technology has developed to the point where it is now possible to model evolving discontinuities independently of the underlying mesh, which is particularly useful in simulating failure of solids. However, the approach remains tedious to program, particularly in the case of coupled problems where a variety of finite element bases are employed and where a mixture of continuous and discontinuous fields may be used. We tackle this point by exploring the scope for employing automated code generation techniques for modelling discontinuities. Function spaces and variational forms are defined in a language that resembles mathematical notation, and computer code for modelling discontinuities is automatically generated. Principles underlying the approach are elucidated and a number of two- and three-dimensional examples for different equations are presented.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 82
    Publication Date: 2012-05-03
    Description: Online OVSF code assignment has an important application to wireless communications. Recently, this problem was formally modeled as an online problem, and performances of online algorithms have been analyzed by the competitive analysis. The previous best upper and lower bounds on the competitive ratio were 10 and 5/3, respectively. In this paper, we improve them to 7 and 2, respectively. We also show that our analysis for the upper bound is tight by giving an input sequence for which the competitive ratio of our algorithm is 7 ― ε for an arbitrary constant ε 〉 0.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 83
    Publication Date: 2012-05-03
    Description: We consider a pursuit-evasion problem where some lions have the task to clear a grid graph whose nodes are initially contaminated. The contamination spreads one step per time unit in each direction not blocked by a lion. A vertex is cleared from its contamination whenever a lion moves to it. Brass et al. [5] showed that n/2 lions are not enough to clear the n x n-grid. In this paper, we consider the same problem in dimension d 〉 2 and prove that Θ(nd-1/√d) lions are necessary and sufficient to clear the nd-grid. Furthermore, we analyze a problem variant where the lions are also allowed to jump from grid vertices to non-adjacent grid vertices.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 84
    Publication Date: 2012-05-03
    Description: Considerable importance in molecular biophysics is attached to influencing by mutagenesis the specific properties of a protein family. The working hypothesis is that mutating residues at few selected positions can affect specificity. Statistical analysis of homologue sequences can identify putative specificity determining positions (SDPs) and help to shed some light on the peculiarities underlying their functional role. In this work, we present an approach to identify such positions inspired by state of the art mutual information-based SDP prediction methods. The algorithm based on this approach provides a systematic procedure to point at the relevant physical characteristics of putative SPDs and can investigate the effects of correlated mutations. The method is tested on two standard benchmarks in the field and further validated in the context of a biologically interesting problem: the multimerization of the Intrinsically Fluorescent Proteins (IFP).
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 85
    Publication Date: 2012-05-03
    Description: Calls from 14 species of bat were classified to genus and species using discriminant function analysis (DFA), support vector machines (SVM) and ensembles of neural networks (ENN). Both SVMs and ENNs outperformed DFA for every species while ENNs (mean identification rate – 97%) consistently outperformed SVMs (mean identification rate – 87%). Correct classification rates produced by the ENNs varied from 91% to 100%; calls from six species were correctly identified with 100% accuracy. Calls from the five species of Myotis, a genus whose species are considered difficult to distinguish acoustically, had correct identification rates that varied from 91 – 100%. Five parameters were most important for classifying calls correctly while seven others contributed little to classification performance.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 86
    Publication Date: 2012-05-03
    Description: An image tracking algorithm, which was originally used with the particle image velocimetry (PIV) to determine velocities of buoyant solid particles in water, is modified and applied in the presented work to detect motion of fire ant on a planar surface. A group of fire ant workers are put to the bottom of a tub and excited with vibration of selected frequency and intensity. The moving fire ants are captured with an image system that successively acquires image frames of high digital resolution. The background noise in the imaging recordings is extracted by averaging hundreds of frames and removed from each frame. The individual fire ant images are identified with a recursive digital filter, and then they are tracked between frames according to the size, brightness, shape, and orientation angle of the ant image. The speed of an individual ant is determined with the displacement of its images and the time interval between frames. The trail of the individual fire ant is determined with the image tracking results, and a statistical analysis is conducted for all the fire ants in the group. The purpose of the experiment is to investigate the response of fire ants to the substrate vibration. Test results indicate that the fire ants move faster after being excited, but the number of active ones are not increased even after a strong excitation.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 87
    Publication Date: 2012-05-03
    Description: Greenhouse-grown butter lettuce (Lactuca sativa L.) can potentially be stored for 21 days at constant 0°C. When storage temperature was increased to 5°C or 10°C, shelf life was shortened to 14 or 10 days, respectively, in our previous observations. Also, commercial shelf life of 7 to 10 days is common, due to postharvest temperature fluctuations. The objective of this study was to establish neural network (NN) models to predict the remaining shelf life (RSL) under fluctuating postharvest temperatures. A box of 12 - 24 lettuce heads constituted a sample unit. The end of the shelf life of each head was determined when it showed initial signs of decay or yellowing. Air temperatures inside a shipping box were recorded. Daily average temperatures in storage and averaged shelf life of each box were used as inputs, and the RSL was modeled as an output. An R2 of 0.57 could be observed when a simple NN structure was employed. Since the "future" (or remaining) storage temperatures were unavailable at the time of making a prediction, a second NN model was introduced to accommodate a range of future temperatures and associated shelf lives. Using such 2-stage NN models, an R2 of 0.61 could be achieved for predicting RSL. This study indicated that NN modeling has potential for cold chain quality control and shelf life prediction.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 88
    Publication Date: 2012-05-03
    Description: The discovery of gene regulatory elements requires the synergism between computational and experimental techniques in order to reveal the underlying regulatory mechanisms that drive gene expression in response to external cues and signals. Utilizing the large amount of high-throughput experimental data, constantly growing in recent years, researchers have attempted to decipher the patterns which are hidden in the genomic sequences. These patterns, called motifs, are potential binding sites to transcription factors which are hypothesized to be the main regulators of the transcription process. Consequently, precise detection of these elements is required and thus a large number of computational approaches have been developed to support the de novo identification of TFBSs. Even though novel approaches are continuously proposed and almost all have reported some success in yeast and other lower organisms, in higher organisms the problem still remains a challenge. In this paper, we therefore review the recent developments in computational methods for transcription factor binding site prediction. We start with a brief review of the basic approaches for binding site representation and promoter identification, then discuss the techniques to locate physical TFBSs, identify functional binding sites using orthologous information, and infer functional TFBSs within some context defined by additional prior knowledge. Finally, we briefly explore the opportunities for expanding these approaches towards the computational identification of transcriptional regulatory networks.
    Electronic ISSN: 1999-4893
    Topics: Computer Science
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  • 89
    Publication Date: 2012-05-03
    Description: Sector sampling is a new and simple approach to sampling objects or borders. This approach would be especially useful for sampling objects in small discrete areas or “polygons” with lots of internal or external edge, but it may be extended to sampling any object regardless of polygon size. Sector plots are wedge-shaped with a fixed sector angle. The probability of object selection is constant and equal to the sector angle in degrees divided by 360°. A unique property of sector sampling is that the point from which the angle originates may be located subjectively when the sector direction is at random. Another advantage over traditional sampling (such as fixed or variable area plots) is that there is no edge effect; that is, there is no altering of selection probabilities of objects close to polygon boundaries. Various approaches are described for deriving polygon means and totals with their associated variances. We review the genesis of sector sampling and develop two new components: sub-sampling using fixed area plots and line sampling using the sector arcs as transects. Sector sampling may be extended to measuring a variety of objects such as trees, shrubs, plants, birds, animal trails and polygon borders.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 90
    Publication Date: 2012-05-03
    Description: The objective of REDD+ is to create incentives for the reduction of emissions from deforestation and forest degradation and for the increase of carbon stocks through the enhancement, conservation and sustainable management of forests in developing countries. As part of the international negotiations under the United Nations Framework Convention on Climate Change (UNFCCC), compensation would be estimated in relation to national performance but how these incentives will be channeled within countries has not been specified and there are concerns about how the benefits will be shared among different stakeholders. One central issue is that under the national approach good performance in one region can be offset by underperformance in other regions of the country thus preventing the generation of predictable local incentives. Other issues relate to the need to provide incentives to a wide range of stakeholders and to avoid perverse reactions. To address these and other issues we propose separating the accounting of reduced deforestation, reduced degradation and enhancement of forests. The local attribution of credits would be easier for carbon enhancement, and possibly reduced degradation, than for reduced deforestation, since carbon gains can, in principle, be measured locally in the first two cases, while estimating achievements in reduced deforestation requires a regional approach. This separation in attribution of rewards can help to create adequate incentives for the different stakeholders and overcome some of the problems associated with the design and implementation of national REDD+ programs.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 91
    Publication Date: 2012-05-03
    Description: This paper assesses quantification methods for carbon leakage from forestry activities for their suitability in leakage accounting in a future Reducing Emissions from Deforestation and Forest Degradation (REDD) mechanism. To that end, we first conducted a literature review to identify specific pre-requisites for leakage assessment in REDD. We then analyzed a total of 34 quantification methods for leakage emissions from the Clean Development Mechanism (CDM), the Verified Carbon Standard (VCS), the Climate Action Reserve (CAR), the CarbonFix Standard (CFS), and from scientific literature sources. We screened these methods for the leakage aspects they address in terms of leakage type, tools used for quantification and the geographical scale covered. Results show that leakage methods can be grouped into nine main methodological approaches, six of which could fulfill the recommended REDD leakage requirements if approaches for primary and secondary leakage are combined. The majority of methods assessed, address either primary or secondary leakage; the former mostly on a local or regional and the latter on national scale. The VCS is found to be the only carbon accounting standard at present to fulfill all leakage quantification requisites in REDD. However, a lack of accounting methods was identified for international leakage, which was addressed by only two methods, both from scientific literature.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 92
    Publication Date: 2012-05-03
    Description: This study analyzes the latent demand to outdoor recreation participation and identifies what factors are constraining people from realizing this demand. In Sweden, recreation in the outdoors is seen as a public right as articulated in public policy and much of the outdoor recreation centre around forested landscapes—over 60 percent of the land area is classified as forest. Using data from a nationwide survey of 43 recreation activities, the study takes a time-contextual approach to reveal variations in recreation constraints across weekdays, weekends and holidays. Results show that almost half the population has a latent demand to increase their participation in outdoor recreation. Three categories of time contextual constraints are identified and several of the constraints studied show variations across outdoor activities and socio-economic factors. Practical implications for the promotion of outdoor recreation participation by public agencies, recreation managers and tourism businesses are discussed based on the study findings.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 93
    Publication Date: 2012-05-03
    Description: Bhutan was an inhabited wilderness until 1961, when road construction started after the closure of the Tibetan border. Since then, the road network has expanded from the Indian boarder, often tracing traditional trails. This has accelerated commerce as well as movement of people from India, benefitting both the Bhutanese and foreign tourists. At the same time, dependence on imported automobiles and fossil fuel has risen, and roadless areas have begun to shrink. This brought an inevitable loss of traditional environmental knowledge, such as the care of mules for packing, and reduction in physical and mental health among the Bhutanese. People who lost jobs as horsemen moved into towns to find jobs. Road extension is also a double-edged sword for visitors. It has resulted in shrinking trekking areas and loss of traditional culture, both of which have been sacrificed for easy access. Protected areas often function as fortifications against mechanical civilization. However, protected-area status or its zoning does not guarantee that an area will remain roadless where there is considerable resident population. An analysis in Jigme Dorji National Park showed the gradual retreat of trailheads and increasing dependence on automobiles among residents and trekkers. B. MacKaye, a regional planner in the Eastern United States, proposed using trails as a tool to control such mechanical civilization. His philosophy of regional planning suggests two measures; one is consolidated trailheads as dams, and the other is confinement of roads by levees, consisting of new trails and wilderness belts. According to case studies, the author proposed six options for coexistence of trails with roads.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 94
    Publication Date: 2012-05-03
    Description: Despite the widespread agreement on the importance of preserving ecological integrity in conservation and outdoor recreation decision-making processes, traditional metrics analyzing the supply of and demand for conservation and recreation resources have focused on geographical and population-centric units of measurement rather than ecological ones. One tool past researchers have used to inform recreation resource planning is the recreation location quotient (RLQ). While simple park-to-population ratios or acres-per-capita metrics provide a base measure of carrying capacity and are often useful to set broad recreation supply standards, the RLQ offers a more nuanced snapshot of supply and demand by comparing regional ratios to a standardized reference region. The RLQ is thus able to provide a statistic or quotient that highlights regions where recreation resources are particularly abundant and/or scarce relative to a reference area. This project expands the past RLQ analyses by investigating the distribution of recreation resources across the 10 ecological sections found within the US state of Minnesota. RLQs were calculated using recreation trail mileage, natural resource and recreation area acreage data, and recreation facility data from federal, state, and local agencies. Results found notable differences in supply of recreation resources across ecological sections. Some sections were considerably underrepresented in recreation resources-per area (e.g., Red River Valley and North Central Glaciated Plains) while others were underrepresented in recreation resources-per capita (e.g., Minnesota and Northeast Iowa Morainal). The RLQ statistics and resulting maps illustrating relative surplus or deficiencies can inform future land acquisition decisions and highlight the need for cross-jurisdictional planning in order to ensure outdoor recreation systems are ecologically representative. Possible implications and recommendations for future planning decisions are discussed.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 95
    Publication Date: 2012-05-03
    Description: Cyclaneusma needle-cast has a major impact on the New Zealand forest industry. The causal agent, Cyclaneusma minus, causes most severe damage to 11–20 year-old trees and currently there are no economically viable procedures for control of the disease in New Zealand. Here we present a method for genetic transformation of C. minus using protoplasts generated by incubation with Glucanex™ enzyme. C. minus was transformed with a gene encoding green fluorescent protein (GFP) and expression was stable after successive sub-culturing of the strain in the absence of selective pressure. Expression of the gfp gene allowed us to utilize an in vitro GFP-based screening method to identify strains of Trichoderma with potential for biocontrol of this disease. The strain that showed the most promise as a potential biocontrol candidate exhibited a low level of inhibition by uncharacterized metabolite(s) that C. minus secretes into the medium, and consistently caused a loss of GFP expression from the GFP-labeled C. minus strain. The interaction between C. minus and the biocontrol strain, in the interaction zone where GFP expression was lost, was determined to be fungicidal. The utility of such biocontrol strains is discussed. This study represents the first genetic manipulation of C. minus and will pave the way for further studies of the life cycle and infection biology of this organism.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 96
    Publication Date: 2012-05-03
    Description: Forest biomass is an important energy source in Sweden and some other European countries. In this paper we estimate the physically available (i.e., total potential) forest biomass for energy from annual forest harvesting (1970–2008) or in the total standing stock (2008) in Sweden. To place Sweden’s forest resources into perspective we relate this to an estimated need for renewable energy sources in Europe. As Swedish forests supply a range of goods and ecosystem services, and as forest biomass is often bulky and expensive to procure, we also discuss issues that affect the amount of forest biomass that is actually available for energy production. We conclude that forests will contribute to Sweden’s renewable energy potential, but to a limited extent and expectations must be realistic and take techno-economical and environmental issues into consideration. To meet future energy needs in Sweden and Europe, a full suite of renewable energy resources will be needed, along with efficient conversion systems. A long-term sustainable supply of forest resources for energy and other uses can be obtained if future harvest levels are increased until they are equal to the annual growth increment. Delivering more than this would require increasing forest productivity through more intensive management. The new management regimes would have to begin now because it takes a long time to change annual production in temperate and boreal forests.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 97
    Publication Date: 2012-05-03
    Description: Coping or adaptation following large-scale disturbance may depend on the political system and its preparedness and policy development in relation to risks. Adaptive or foresight planning is necessary in order to account and plan for potential risks that may increase or take place concurrently with climate change. Forests constitute relevant examples of large-scale renewable resource systems that have been directly affected by recent environmental and social changes, and where different levels of management may influence each other. This article views disturbances in the forest sectors of Sweden and Canada, two large forest nations with comparable forestry experiences, in order to elucidate the preparedness and existing responses to multiple potential stresses. The article concludes that the two countries are exposed to stresses that indicate the importance of the governing and institutional system particularly with regard to multi-level systems including federal and EU levels. While economic change largely results in privatization of risk onto individual companies and their economic resources (in Canada coupled with a contestation of institutional systems and equity in these), storm and pest outbreaks in particular challenge institutional capacities at administrative levels, within the context provided by governance and tenure systems.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 98
    Publication Date: 2012-05-03
    Description: New diseases in forest ecosystems have been reported at an increasing rate over the last century. Some reasons for this include the increased disturbance by humans to forest ecosystems, changed climatic conditions and intensified international trade. Although many of the contributing factors to the changed disease scenarios are anthropogenic, there has been a reluctance to control them by legislation, other forms of government authority or through public involvement. Some of the primary obstacles relate to problems in communicating biological understanding of concepts to the political sphere of society. Relevant response to new disease scenarios is very often associated with a proper understanding of intraspecific variation in the challenging pathogen. Other factors could be technical, based on a lack of understanding of possible countermeasures. There are also philosophical reasons, such as the view that forests are part of the natural ecosystems and should not be managed for natural disturbances such as disease outbreaks. Finally, some of the reasons are economic or political, such as a belief in free trade or reluctance to acknowledge supranational intervention control. Our possibilities to act in response to new disease threats are critically dependent on the timing of efforts. A common recognition of the nature of the problem and adapting vocabulary that describe relevant biological entities would help to facilitate timely and adequate responses in society to emerging diseases in forests.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 99
    Publication Date: 2012-05-03
    Description: Our objective was to compare and evaluate the practical applicability to REDD+ of ten forest management, social, environmental and carbon standards that are currently active worldwide: Climate, Community and Biodiversity (CCB), CCB REDD+ Social and Environmental Standards (CCBA REDD+ S&E), CarbonFix Standard (CFS), Forest Stewardship Council (FSC), Global Conservation Standard (GCS), ISO 14064:2006, Plan Vivo Standard, Programme for Endorsement of Forest Certification (PEFC), SOCIALCARBON Standard and the Voluntary Carbon Standard (VCS). We developed a framework for evaluation of these standards relative to each other using four substantive criteria: (1) poverty alleviation, (2) sustainable management of forests (SMF), (3) biodiversity protection, (4) quantification and assessment of net greenhouse gas (GHG) benefits; and two procedural criteria: (5) monitoring and reporting, and (6) certification procedures. REDD programs require assessment of GHG benefits, monitoring, reporting and certification. Our analysis shows that only the Voluntary Carbon Standard (VCS) treats these three criteria comprehensively. No standard provides comprehensive coverage of the social and other environmental criteria. FSC, PEFC and CarbonFix provide comprehensive assessments of the sustainable forest management criterion. CCBA REDD+ S&E, CCB, and GCS provide comprehensive coverage of the biodiversity and poverty alleviation criteria. Experience in using these standards in pilot projects shows that projects are currently combining several standards as part of their strategy to improve their ability to attract investment, but costs of implementing several certification schemes is a concern. We conclude that voluntary certification provides useful practical experience that should feed into the design of the international REDD+ regime.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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  • 100
    Publication Date: 2012-05-03
    Description: One of the main issues regarding the implementation of REDD+ in Latin America has been the growing concern that such projects may infringe upon the rights and negatively affect the livelihoods of forest-dependent communities. Various indigenous and civil society organizations are ardently opposed to the initiative. Such is the case in Ecuador, where indigenous opposition to REDD+ represents a considerable obstacle in the creation of a national strategy since more than 60% of the country’s remaining forest cover is on indigenous land or under indigenous occupation. Thus one of the most critical challenges remaining for Ecuador will be the construction of a strong legal, financial, and institutional framework—one that the greater indigenous community might be willing to accept. Closer examination of this topic however, reveals just how difficult this may become. Lack of information, a recent political split between national authorities and the indigenous sector, and the dissimilar organizational capacity levels of indigenous communities make the feasibility of carrying out REDD+ projects on these lands extremely complex. However, the biggest obstacle may be ideological. Many indigenous groups view REDD+, with its possible emphasis on international markets and neoliberal mechanisms, as a continuation of the type of policies that have impeded their quest for sovereignty and self determination. As such, indigenous people are only willing to consider such projects if they clearly see preconditions in place that would safeguard their cultures, territories, and autonomy.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI Publishing
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