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  • 1
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    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 67 no. 1, pp. vi-vii
    Publication Date: 2024-06-27
    Keywords: Obituary ; Plant Science ; Ecology ; Evolution ; Behavior and Systematics
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 2
    Publication Date: 2024-06-27
    Description: Invasive alien species (IAS) threaten biodiversity and human well-being. These threats may increase in the future, necessitating accurate projections of potential locations and the extent of invasions. The main aim of the IAS prototype Digital Twin (IAS pDT) is to dynamically project the level of plant invasion at habitat level across Europe under current and future climates using joint species distribution models. The pDT detects updates in data sources and versions of the datasets and model outputs, implementing the FAIR principles. The pDT’s outputs will be available via an interactive dashboard. All input and output data will be freely accessible.
    Keywords: Invasive alien species ; Digital Twin ; climate change ; joint species distribution models ; Dynamic Data-Driven Application Systems ; workflows
    Repository Name: National Museum of Natural History, Netherlands
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  • 3
    Publication Date: 2024-06-27
    Description: The prevalence in allergic diseases has increased considerably in the past decades. An important trigger of the symptoms of allergic rhinitis (hay fever) is the pollen of wind-pollinating plants. This pollen is developed by plants and is released into the air where it gets exposed to environmental influences and air pollution. We investigated the chemical changes to pollen that occur after release from the flower in a rural (Veluwe) and an urban (Amsterdam) site in the Netherlands using Fourier Transform Infrared (FTIR) spectroscopy. During the spring/summer of 2020 (during the COVID pandemic) the pollen of nine taxa (Alnus, Betula, Fagus, Fraxinus, Pinus, Plantago, Poaceae, Quercus and Salix) were collected directly from flowers and the air (using a mobile sampler). FTIR spectra were obtained for multiple individual pollen grains for each taxa. The spectra obtained from airborne pollen collected at the rural vs. urban sites did not show any statistical difference. This is possibly a result of a reduced difference in pollutant concentrations between the two sites due to the COVID-19-lockdown measures were in place. However, consistent differences in the FTIR spectra recovered from airborne vs. flower pollen were recorded for all pollen taxa. After the release from the flower the chemical composition of the pollen changed: (i) polysaccharides are converted to monosaccharides; (ii) protein concentration and/or nitration/oxidation level is altered; (iii) lipids are modified and/or reduced in concentration. These changes may alter the allergenicity of the pollen and suggest that further work on the allergenic nature of airborne pollen is required.
    Keywords: Pollen ; Airborne ; FTIR spectroscopy ; Air pollution
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 4
    Publication Date: 2024-06-27
    Description: Water mites of the genus Atractides Koch, 1837 are among the most frequently found mites in running waters of the Himalayas. In the present study seven species of this genus are identified from material collected in 2021 from Bhutan. Five species new for science are described, i.e., Atractides mangdensis sp. nov., A. conflatus sp. nov., A. bhutanicus sp. nov., A. indentatus sp. nov., and A. himalayicus sp. nov.
    Keywords: Himalayas ; taxonomy ; new species ; running waters
    Repository Name: National Museum of Natural History, Netherlands
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  • 5
    Publication Date: 2024-06-27
    Description: Documenting the seasonal temperature cycle constitutes an essential step toward mitigating risks associated with extreme weather events in a future warmer world. The mid-Piacenzian Warm Period (mPWP), 3.3 to 3.0 million years ago, featured global temperatures approximately 3°C above preindustrial levels. It represents an ideal period for directed paleoclimate reconstructions equivalent to model projections for 2100 under moderate Shared Socioeconomic Pathway SSP2- 4.5. Here, seasonal clumped isotope analyses of fossil mollusk shells from the North Sea are presented to test Pliocene Model Intercomparison Project 2 outcomes. Joint data and model evidence reveals enhanced summer warming (+4.3° ± 1.0°C) compared to winter (+2.5° ± 1.5°C) during the mPWP, equivalent to SSP2-4.5 outcomes for future climate. We show that Arctic amplification of global warming weakens mid- latitude summer circulation while intensifying seasonal contrast in temperature and precipitation, leading to an increased risk of summer heat waves and other extreme weather events in Europe’s future.
    Keywords: Aragonitic bivalve shells ; Sea-surface temperature ; North-Sea ; Atmospheric circulation ; PLIOMIP2 simulations ; Arctic amplification ; Marine heatwaves ; Summer drought ; Wadden Sea ; Pliocene
    Repository Name: National Museum of Natural History, Netherlands
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  • 6
    Publication Date: 2024-06-27
    Description: Background: Predicting and explaining species occurrence using environmental characteristics is essential for nature conservation and management. Species distribution models consider species occurrence as the dependent variable and environmental conditions as the independent variables. Suitable conditions are estimated based on a sample of species observations, where one assumes that the underlying environmental conditions are known. This is not always the case, as environmental variables at broad spatial scales are regularly extrapolated from point-referenced data. However, treating the predicted environmental conditions as accurate surveys of independent variables at a specific point does not take into account their uncertainty. Methods: We present a joint hierarchical Bayesian model where models for the environmental variables, rather than a set of predicted values, are input to the species distribution model. All models are fitted together based only on point-referenced observations, which results in a correct propagation of uncertainty. We use 50 plant species representative of the Dutch flora in natural areas with 8 soil condition predictors taken during field visits in the Netherlands as a case study. We compare the proposed model to the standard approach by studying the difference in associations, predicted maps, and cross-validated accuracy. Findings: We find that there are differences between the two approaches in the estimated association between soil conditions and species occurrence (correlation 0.64-0.84), but the predicted maps are quite similar (correlation 0.82-1.00). The differences are more pronounced in the rarer species. The cross-validated accuracy is substantially better for 5 species out of the 50, and the species can also help to predict the soil characteristics. The estimated associations tend to have a smaller magnitude with more certainty. Conclusion: These findings suggests that the standard model is often sufficient for prediction, but effort should be taken to develop models which take the uncertainty in the independent variables into account for interpretation.
    Repository Name: National Museum of Natural History, Netherlands
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  • 7
    Publication Date: 2024-06-27
    Description: Long-term food security and agricultural sustainability depend on protecting the eco-evolutionary processes that select for local adaptation in crops. Since seed systems structure how people acquire seed, institutional and social changes influence evolutionary processes within agroecosystems. Since World War II, the rise of professional breeding has bifurcated seed systems into traditional and formal systems, which has negatively affected agrobiodiversity, crop evolution, and agricultural sustainability. In traditional seed systems, farmers often save seed from plants that best provide desired qualities, selecting landrace crop varieties to adapt to local environmental conditions. In formal or centralized seed systems, farmers buy seeds bred primarily for maximizing yield under ideal conditions. When farmers source seeds externally,evolutionary processes underlying local adaptation are disrupted. Here, we argue that traditional seed systems provide important evosystem services, or the evolutionary processes resulting from the maintenance and use of genetic diversity that benefit society. We present a framework on how seed systems influence the evolutionary processes that enable local adaptation, which is necessary for sustainable agriculture. We discuss how changes in human values underlying traditional and formal seed systems can alter evolutionary processes that underlie local adaptation. We conclude that developing policies that support people in managing ecological and evolutionary processes within seed systems is needed to address current and future challenges of global food security and agricultural sustainability.
    Keywords: agriculture ; agroecology ; biodiversity ; ecosystem services ; evolution ; insects ; landrace ; seed systems
    Repository Name: National Museum of Natural History, Netherlands
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  • 8
    Publication Date: 2024-06-27
    Description: In this contribution, feeding behaviour assays with the three species Paucumara falcata, Dugesia sp. and Girardia sp. were used to investigate the function of the pharynx during feeding and whether absence of feeding behaviour until full regeneration is a widespread phenomenon among planarians from different taxonomic groups. Our results showed that feeding behaviour of decapitated flatworms was inhibited. Intact worms responded only to pork liver pieces, but isolated pharynges were highly responsive to both pork liver pieces and pork liver extracts. After transverse cutting, the oral part of the isolated pharynx was responsive, while the aboral part showed no response to food items, suggesting that the oral portion of pharynx plays a crucial role during feeding.
    Keywords: feeding behaviour ; isolated pharynx ; Platyhelminthes ; Tricladida
    Repository Name: National Museum of Natural History, Netherlands
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  • 9
    Publication Date: 2024-06-27
    Description: The contribution of deterministic versus stochastic processes to the spatio-temporal assembly of soil microbial communities in tropical forests requires quantification so that responses to climate change may be accurately projected. Here we report the spatio-temporal composition of soil fungal communities in a topographically homogeneous forest area in central Amazonia. Soil fungal communities have a greater turnover in space than over time. Stochastic processes are inferred to dominate in the rainy season and deterministic processes in the dry season. Our study highlights the importance of spatial heterogeneity in the absence of environmental gradients and its relationship with seasonal patterns that modulate spatial heterogeneity and contribute to environmental determinism versus stochasticity for fungal community assembly. This baseline may serve to assess deviations in community patterns caused by changes in biotic interactions with above-ground vegetation, such as those resulting from shifts in taxonomical/functional composition of trees driven by climate change.
    Repository Name: National Museum of Natural History, Netherlands
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  • 10
    Publication Date: 2024-06-27
    Description: Terrestrial orchids are a group of genetically understudied, yet culturally and economically important plants. The Orchidinae tribe contains many species that produce edible tubers that are used for the production of traditional delicacies collectively called ‘salep’. Overexploitation of wild orchids in the Eastern Mediterranean and Western Asia threatens to drive many of these species to extinction, but cost- effective tools for monitoring their trade are currently lacking. Here we present a custom bait kit for target enrichment and sequencing of 205 novel genetic mark- ers that are tailored to phylogenomic applications in Orchidinae s.l. A subset of 31 markers capture genes putatively involved in the production of glucomannan, a water-soluble polysaccharide that gives salep its distinctive properties. We tested the kit on 73 taxa native to the area, demonstrating universally high locus recovery irrespective of species identity, that exceeds the total sequence length obtained with alternative kits currently available. Phylogenetic inference with concatenation and coalescent approaches was robust and showed high levels of support for most clades, including some which were previously unresolved. Resolution for hybridiz- ing and recently radiated lineages remains difficult, but could be further improved by analysing multiple haplotypes and the non-exonic sequences captured by our kit, with the promise to shed new light on the evolution of enigmatic taxa with a complex speciation history. Offering a step-up from traditional barcoding and universal markers, the genome-wide custom loci targeted by Orchidinae-205 are a valuable new resource to study the evolution, systematics and trade of terrestrial orchids.
    Keywords: Orchidinae ; phylogenomics ; species identification ; target capture ; wildlife trade
    Repository Name: National Museum of Natural History, Netherlands
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