ALBERT

Note: Contents: Part I Introductory Section. - 1 High-Resolution Paleoclimatology / Raymond S. Bradley. - 2 Dendroclimatology in High-Resolution Paleoclimatology / Malcolm K. Hughes. - Part II Scientific Bases of Dendroclimatology. - 3 How Well Understood Are the Processes that Create Dendroclimatic Records? A Mechanistic Model of the Climatic Control on Conifer Tree-Ring Growth Dynamics / Eugene A. Vaganov, Kevin J. Anchukaitis, and Michael N. Evans. - 4 Uncertainty, Emergence, and Statistics in Dendrochronology / Edward R. Cook and Neil Pederson. - 5 A Closer Look at Regional Curve Standardization of Tree-Ring Records: Justification of the Need, a Warning of Some Pitfalls, and Suggested Improvements in Its Application / Keith R. Briffa and Thomas M. Melvin. - 6 Stable Isotopes in Dendroclimatology: Moving Beyond ‘Potential’ / Mary Gagen, Danny McCarroll, Neil J. Loader, and Iain Robertson. - Part III Reconstruction of Climate Patterns and Values Relative to Today’s Climate. - 7 Dendroclimatology from Regional to Continental Scales: Understanding Regional Processes to Reconstruct Large-Scale Climatic Variations Across the Western Americas / Ricardo Villalba, Brian H. Luckman, Jose Boninsegna,Rosanne D. D’Arrigo, Antonio Lara, Jose Villanueva-Diaz, Mariano Masiokas, Jaime Argollo, Claudia Soliz, Carlos LeQuesne, David W. Stahle, Fidel Roig, Juan Carlos Aravena, Malcolm K. Hughes, Gregory Wiles, Gordon Jacoby, Peter Hartsough, Robert J.S. Wilson, Emma Watson, Edward R. Cook, Julian Cerano-Paredes, Matthew Therrell, Malcolm Cleaveland, Mariano S. Morales, Nicholas E. Graham, Jorge Moya, Jeanette Pacajes, Guillermina Massacchesi, Franco Biondi, Rocio Urrutia, and Guillermo Martinez Pastur. - Part IV Applications of Dendroclimatology. - 8 Application of Streamflow Reconstruction to Water Resources Management / David M. Meko and Connie A. Woodhouse. - 9 Climatic Inferences from Dendroecological Reconstructions / Thomas W. Swetnam and Peter M. Brown. - 10 North American Tree Rings, Climatic Extremes, and Social Disasters / David W. Stahle and Jeffrey S. Dean. - Part V Overview. - 11 Tree Rings and Climate: Sharpening the Focus / Malcolm K. Hughes, Henry F. Diaz, and Thomas W. Swetnam. - Index.

Note: TABLE OF CONTENTS Geology as medicine and medics as geologists / Christopher J. Duffin / Geological Society, London, Special Publications, 375, 1-6, 23 August 2013, https://doi.org/10.1144/SP375.29 Lithotherapeutical research sources from antiquity to the mid-eighteenth century / Christopher J. Duffin / Geological Society, London, Special Publications, 375, 7-43, 4 September 2013, https://doi.org/10.1144/SP375.25 Cryptopalaeontology / Eladio Liñán, María Liñán and Joaquín Carrasco / Geological Society, London, Special Publications, 375, 45-64, 10 May 2013, https://doi.org/10.1144/SP375.14 The stomatological use of stones cited in the Kitab al-tasrif treatise (Abulcasis, 1000 CE) / Joaquín Carrasco and María Liñán / Geological Society, London, Special Publications, 375, 65-80, 11 December 2012, https://doi.org/10.1144/SP375.7 The gem electuary / Christopher J. Duffin / Geological Society, London, Special Publications, 375, 81-111, 17 December 2012, https://doi.org/10.1144/SP375.9 Medicinal terra sigillata: a historical, geographical and typological review / Arthur Macgregor / Geological Society, London, Special Publications, 375, 113-136, 15 November 2012, https://doi.org/10.1144/SP375.1 Materia medica in the seventeenth-century Paper Museum of Cassiano dal Pozzo / W. D. Ian Rolfe / Geological Society, London, Special Publications, 375, 137-156, 15 November 2012, https://doi.org/10.1144/SP375.3 History of the pharmaceutical use of pumice / Christopher J. Duffin / Geological Society, London, Special Publications, 375, 157-169, 17 December 2012, https://doi.org/10.1144/SP375.8 Pharmaceutical use of gold from antiquity to the seventeenth century / Renzo Console / Geological Society, London, Special Publications, 375, 171-191, 2 April 2013, https://doi.org/10.1144/SP375.12 Bezoar stones, magic, science and art / Maria Do Sameiro Barroso / Geological Society, London, Special Publications, 375, 193-207, 26 February 2013, https://doi.org/10.1144/SP375.11 Some early eighteenth century geological Materia Medica / Christopher J. Duffin / Geological Society, London, Special Publications, 375, 209-233, 2 April 2013, https://doi.org/10.1144/SP375.13 Religiosity and magic in some lithoiatric practices of European folk medicine / Massimo Aliverti / Geological Society, London, Special Publications, 375, 235-242, 23 August 2013, https://doi.org/10.1144/SP375.27 Britain’s spa heritage: a hydrogeological appraisal / John D. Mather / Geological Society, London, Special Publications, 375, 243-260, 2 April 2013, https://doi.org/10.1144/SP375.16 Groundwater – Medicine by the Glassful? / N. S. Robins and P. L. Smedley / Geological Society, London, Special Publications, 375, 261-267, 2 April 2013, https://doi.org/10.1144/SP375.17 Sunday Stone: an enduring metaphor of mining diseases and underground mining conditions / John H. Pearn and Christopher Gardner-Thorpe / Geological Society, London, Special Publications, 375, 269-278, 11 July 2013, https://doi.org/10.1144/SP375.22 The influence of geology in the development of public health / Beverly P. Bergman / Geological Society, London, Special Publications, 375, 279-287, 15 November 2012, https://doi.org/10.1144/SP375.6 From flesh to fossils – Nicolaus Steno’s anatomy of the Earth / Jakob Bek-Thomsen / Geological Society, London, Special Publications, 375, 289-305, 2 April 2013, https://doi.org/10.1144/SP375.15 Diagnosing fossilization in the Nordic Renaissance: an investigation into the correspondence of Ole Worm (1588–1654) / Ella Hoch / Geological Society, London, Special Publications, 375, 307-327, 17 September 2013, https://doi.org/10.1144/SP375.26 Education forms the tender mind / Christopher Gardner-Thorpe / Geological Society, London, Special Publications, 375, 329-337, 23 August 2013, https://doi.org/10.1144/SP375.28 James Parkinson’s ‘system of successive creations’ / Cherry Lewis / Geological Society, London, Special Publications, 375, 339-348, 15 May 2013, https://doi.org/10.1144/SP375.18 From obstetrics to oryctology: inside the mind of William Hunter (1718–1783) / J. J. Liston / Geological Society, London, Special Publications, 375, 349-373, 15 May 2013, https://doi.org/10.1144/SP375.21 John Jeremiah Bigsby, MD: British Army physician and pioneer North American geologist / Leonard G. Wilson / Geological Society, London, Special Publications, 375, 375-394, 15 May 2013, https://doi.org/10.1144/SP375.20 Five eighteenth-century medical polymaths / Gillian C. Hull / Geological Society, London, Special Publications, 375, 395-407, 15 November 2012, https://doi.org/10.1144/SP375.5 John Whitaker Hulke, surgeon and palaeontologist / Simon Wills / Geological Society, London, Special Publications, 375, 409-427, 22 February 2013, https://doi.org/10.1144/SP375.10 Dr Arthur Conan Doyle’s contribution to the popularity of pterodactyls / David M. Martill and Tony Pointon / Geological Society, London, Special Publications, 375, 429-443, 15 May 2013, https://doi.org/10.1144/SP375.19 Physicians and their contribution to the early history of earth sciences in Austria / Daniela Claudia Angetter, Bernhard Hubmann and Johannes Seidl / Geological Society, London, Special Publications, 375, 445-454, 15 November 2012, https://doi.org/10.1144/SP375.4 Medical geologists during the Heroic Age of Antarctic exploration / Henry Guly / Geological Society, London, Special Publications, 375, 455-462, 15 November 2012, https://doi.org/10.1144/SP375.2 Vomiting stones: mental illness and forensic medicine in 18th century Italy / Alessandro Porro, Carlo Cristini, Bruno Falconi, Antonia Francesca Franchini and Lorenzo Lorusso / Geological Society, London, Special Publications, 375, 463-468, 4 July 2013, https://doi.org/10.1144/SP375.23 Geology, conservation and dissolution of corpses by Paolo Gorini (1813–1881) / Lorenzo Lorusso, Bruno Falconi, Francesca Antonia Franchini and Alessandro Porro / Geological Society, London, Special Publications, 375, 469-474, 9 July 2013, https://doi.org/10.1144/SP375.24

Note: Earthquakes and fault motion. pp. 1-21. doi:10.1017/CBO9781139628792.002 --- Processing and analysis of recorded seismic signals. pp. 22-40. doi:10.1017/CBO9781139628792.003 --- Mathematical representation of the source. pp. 41-62. doi:10.1017/CBO9781139628792.004 --- Point source models. pp. 63-89. doi:10.1017/CBO9781139628792.005 --- The seismic moment tensor. pp. 90-107. doi:10.1017/CBO9781139628792.006 --- Determination of point source mechanisms. pp. 108-134. doi:10.1017/CBO9781139628792.007 --- Kinematics of extended sources. pp. 135-162. doi:10.1017/CBO9781139628792.008 --- Determination of source dimensions. pp. 163-188. doi:10.1017/CBO9781139628792.009 --- Simple dynamic models. pp. 189-204. doi:10.1017/CBO9781139628792.010 --- Dynamics of fracture. Homogeneous models. pp. 205-231. doi:10.1017/CBO9781139628792.011 --- Fracture dynamics. Heterogeneous models. pp. 232-258. doi:10.1017/CBO9781139628792.012 --- Modeling earthquakes using fracture dynamics. pp. 259-283. doi:10.1017/CBO9781139628792.013

Note: Contents: Preface. - 1 Introduction and datatypes. - 1.1 Why ordination?. - 1.2 Datatypes. - 1.3 Data transformation and standardisation. - 1.4 Missing values. - 1.5 Types of analyses. - 2 Using Canoco 5. - 2.1 Philosophy of Canoco 5. - 2.2 Data import and editing. - 2.3 Defining analyses. - 2.4 Visualising results. - 2.5 Beware, CANOCO 4.x users!. - 3 Experimental design. - 3.1 Completely randomised design. - 3.2 Randomised complete blocks. - 3.3 Latin square design. - 3.4 Pseudo replicates. - 3.5 Combining more than one factor. - 3.6 Following the development of objects in time: repeated observations. - 3.7 Experimental and observational data. - 4 Basics of gradient analysis. - 4.1 Techniques of gradient analysis. - 4.2 Models of response to gradients. - 4.3 Estimating species optima by weighted averaging. - 4.4 Calibration. - 4.5 Unconstrained ordination. - 4.6 Constrained ordination. - 4.7 Basic ordination techniques. - 4.8 Ordination axes as optimal predictors. - 4.9 Ordination diagrams. - 4.10 Two approaches. - 4.11 Testing significance of the relation with explanatory variables. - 4.12 Monte Carlo permutation tests for the significance of regression. - 4.13 Relating two biotic communities. - 4.14 Community composition as a cause: using reverse analysis. - 5.1 Permutation tests: the philosophy. - 5.2 Pseudo-F statistics and significance. - 5.3 Testing individual constrained axes. - 5.4 Tests with spatial or temporal constraints. - 5.5 Tests with hierarchical constraints. - 5.6 Simple versus conditional effects and stepwises election. - 5.7 Variation partitioning. - 5.8 Significance adjustment for multiple tests. - 6 Similarity measures and distance-based methods. - 6.1 Similarity measures for presence-absence data. - 6.2 Similarity measures for quantitative data. - 6.3 Similarity of cases versus similarity of communities. - 6.4 Similarity between species in trait values. - 6.5 Principal coordinates analysis. - 6.6 Constrained principal coordinates analysis (db-RDA). - 6.7 Non-metric multidimensional scaling. - 6.8 Mantel test. - 7.1 Example data set properties. - 7.2 Non-hierarchical classification (K-means clustering). - 7.3 Hierarchical classification. - 7.4 TWINSPAN. - 8 Regression methods. - 8.1 Regression models in general. - 8.2 General linear model: terms. - 8.3 Generalized linear models (GLM). - 8.4 Loess smoother. - 8.5 Generalized additive models (GAM). - 8.6 Mixed-effect models (LMM, GLMM and GAMM). - 8.7 Classification and regression trees (CART). - 8.8 Modelling species response curves with Canoco. - 9 Interpreting community composition with functional traits. - 9.1 Required data. - 9.2 Two approaches in traits - environment studies. - 9.3 Community-based approach. - 9.4 Species-based approach. - 10 Advanced use of ordination. - 10.1 Principal response curves (PRC). - 10.2 Separating spatial variation. - 10.3 Linear discriminant analysis. - 10.4 Hierarchical analysis of community variation. - 10.5 Partitioning diversity indices into alpha and beta components. - 10.6 Predicting community composition. - 11 Visualising multivariate data. - 11.1 Reading ordination diagrams of linear methods. - 11.2 Reading ordination diagrams of unimodal methods. - 11.3 Attribute plots. - 11.4 Visualising classification, groups, and sequences. - 11.5 T-value biplot. - 12 Case study 1: Variation in forest bird assemblages. - 12.1 Unconstrained ordination: portraying variation in bird community. - 12.2 Simple constrained ordination: the effect of altitude on bird community. - 12.3 Partial constrained ordination: additional effect of other habitat characteristics. - 12.4 Separating and testing alpha and beta diversity. - 13 Case study 2: Search for community composition patterns and their environmental correlates: vegetation of spring meadows. - 13.1 Unconstrained ordination. - 13.2 Constrained ordination. - 13.3 Classification. - 13.4 Suggestions for additional analyses. - 13.5 Comparing two communities. - 14 Case study 3: Separating the effects of explanatory variables. - 14.1 Introduction. - 14.2 Data. - 14.3 Changes in species richness and composition. - 14.4 Changes in species traits. - 15 Case study 4: Evaluation of experiments in randomised complete blocks. - 15.1 Introduction. - 15.2 Data. - 15.3 Analysis. - 15.4 Calculating ANOVA using constrained ordination. - 16 Case study 5: Analysis of repeated observations of species composition from a factorial experiment. - 16.1 Introduction. - 16.2 Experimental design. - 16.3 Data coding and use. - 16.4 Univariate analyses. - 16.5 Constrained ordinations. - 16.6 Principal response curves. - 16.7 Temporal changes across treatments. - 16.8 Changes in composition of functional traits. - 17 Case study 6: Hierarchical analysis of crayfish community variation. - 17.1 Data and design. - 17.2 Differences among sampling locations. - 17.3 Hierarchical decomposition of community variation. - 18 Case study 7: Analysis of taxonomic data with discriminant analysis and distance-based ordination. - 18.1 Data. - 18.2 Summarising morphological data with PCA. - 18.3 Linear discriminant analysis of morphological data. - 18.4 Principal coordinates analysis of AFLP data. - 18.5 Testing taxon differences in AFLP data using db-RDA. - 18.6 Taking populations into account. - 19 Case study 8: Separating effects of space and environment on oribatid community with PCNM. - 19.1 Ignoring the space. - 19.2 Detecting spatial trends. - 19.3 All-scale spatial variation of community and environment. - 19.4 Variation partitioning with spatial predictors. - 19.5 Visualising spatial variation. - 20 Case study 9: Performing linear regression with redundancy analysis. - 20.1 Data. - 20.2 Linear regression using program R. - 20.3 Linear regression with redundancy analysis. - 20.4 Fitting generalized linear models in Canoco. - Appendix A Glossary. - Appendix B Sample data sets and projects. - Appendix C Access to Canoco and overview of other software. - Appendix D Working with R. - References. - Index to useful tasks in Canoco 5. - Subject index.