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  • Aster
  • Cell Biology
  • Springer  (8)
  • Springer Nature  (4)
  • Cell Press  (3)
  • Public Library of Science
  • 1
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    Springer Nature
    Publication Date: 2024-04-06
    Description: Developmental Biology; Plant Sciences; Cell Biology
    Keywords: Developmental Biology ; Plant Sciences ; Cell Biology ; thema EDItEUR::K Economics, Finance, Business and Management::KN Industry and industrial studies::KND Manufacturing industries ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TC Biochemical engineering
    Language: English
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  • 2
    Publication Date: 2024-04-05
    Description: This open access textbook leads the reader from basic concepts of chromatin structure and function and RNA mechanisms to the understanding of epigenetics, imprinting, regeneration and reprogramming. The textbook treats epigenetic phenomena in animals, as well as plants. Written by four internationally known experts and senior lecturers in this field, it provides a valuable tool for Master- and PhD- students who need to comprehend the principles of epigenetics, or wish to gain a deeper knowledge in this field. After reading this book, the student will: Have an understanding of the basic toolbox of epigenetic regulation Know how genetic and epigenetic information layers are interconnected Be able to explain complex epigenetic phenomena by understanding the structures and principles of the underlying molecular mechanisms Understand how misregulated epigenetic mechanisms can lead to disease
    Keywords: Genetics and Genomics ; Biomedicine, general ; Cell Biology ; Human Genetics ; Epigenetics ; Biomedical Research ; Medical Genetics ; Cancer ; Chromatin ; Chromatin Dynamics ; Cellular Memory ; DNA Methylation ; Epigenetic Textbook ; Gene Regulation ; Gene Silencing ; Histone Modification ; Imprinting ; Inheritance ; Metabolism ; Nucleus ; Open Access ; Pluripotency ; Reprogramming ; RNA Mechanisms ; Transcription ; X Chromosome inactivation ; Genetics (non-medical) ; Medical research ; Cellular biology (cytology) ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAK Genetics (non-medical) ; thema EDItEUR::M Medicine and Nursing::MB Medicine: general issues::MBG Medical equipment and techniques ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSB Biochemistry ; thema EDItEUR::M Medicine and Nursing::MF Pre-clinical medicine: basic sciences::MFN Medical genetics
    Language: English
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  • 3
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    Springer Nature
    Publication Date: 2024-03-30
    Description: Pharmacology/Toxicology; Molecular Medicine; Human Physiology; Immunology; Cell Biology
    Keywords: Pharmacology/Toxicology ; Molecular Medicine ; Human Physiology ; Immunology ; Cell Biology ; thema EDItEUR::K Economics, Finance, Business and Management::KJ Business and Management::KJM Management and management techniques::KJMV Management of specific areas ; thema EDItEUR::K Economics, Finance, Business and Management::KN Industry and industrial studies::KNB Energy industries and utilities ; thema EDItEUR::K Economics, Finance, Business and Management::KN Industry and industrial studies::KND Manufacturing industries ; thema EDItEUR::M Medicine and Nursing ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TC Biochemical engineering
    Language: English
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  • 4
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    Springer Nature
    Publication Date: 2023-03-03
    Description: Human Physiology, Endocrinology, Cell Biology, Neurosciences
    Keywords: Human Physiology ; Endocrinology ; Cell Biology ; Neurosciences ; bic Book Industry Communication::M Medicine::MB Medicine: general issues::MBD Medical profession
    Language: English
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  • 5
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Meaders, J. L., de Matos, S. N., & Burgess, D. R. A pushing mechanism for microtubule aster positioning in a large cell type. Cell Reports, 33(1), (2020): 108213, doi:10.1016/j.celrep.2020.108213.
    Description: After fertilization, microtubule (MT) sperm asters undergo long-range migration to accurately position pronuclei. Due to the large sizes of zygotes, the forces driving aster migration are considered to be from pulling on the astral MTs by dynein, with no significant contribution from pushing forces. Here, we re-investigate the forces responsible for sperm aster centration in sea urchin zygotes. Our quantifications of aster geometry and MT density preclude a pulling mechanism. Manipulation of aster radial lengths and growth rates, combined with quantitative tracking of aster migration dynamics, indicates that aster migration is equal to the length of rear aster radii, supporting a pushing model for centration. We find that dynein inhibition causes an increase in aster migration rates. Finally, ablation of rear astral MTs halts migration, whereas front and side ablations do not. Collectively, our data indicate that a pushing mechanism can drive the migration of asters in a large cell type.
    Description: We would like to thank Dr. Jesse Gatlin for sending us the Tau-mCherry fusion protein for imaging live MTs. We would also like to thank Dr. Timothy Mitchison, Dr. Christine Field, and Dr. James Pelletier for supplying us with CA4, p150-CC1, and EB1-GFP peptides, as well as for fruitful discussions. Finally, we would like to thank Dr. Charles Shuster and Leslie Toledo-Jacobo for constructive feedback when preparing the manuscript. We thank Bret Judson and the Boston College Imaging Core for infrastructure and support. This material is based upon work supported by NSF grant no. 124425 to D.R.B.
    Keywords: Dynein ; Aster ; Microtubule ; Centrosome ; Pronucleus ; Fertilization ; Aster position
    Repository Name: Woods Hole Open Access Server
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  • 6
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hirst, W. G., Kiefer, C., Abdosamadi, M. K., Schäffer, E., & Reber, S. In Vitro reconstitution and imaging of microtubule dynamics by fluorescence and label-free microscopy. STAR Protocols, 1(3), (2020): 100177, doi:10.1016/j.xpro.2020.100177.
    Description: Dynamic microtubules are essential for many processes in the lives of eukaryotic cells. To study and understand the mechanisms of microtubule dynamics and regulation, in vitro reconstitution with purified components has proven a vital approach. Imaging microtubule dynamics can be instructive for a given species, isoform composition, or biochemical modification. Here, we describe two methods that visualize microtubule dynamics at high speed and high contrast: (1) total internal reflection fluorescence microscopy and (2) label-free interference reflection microscopy.
    Description: We thank the AMBIO imaging facility (Charité, Berlin) and Nikon at MBL for imaging support. We thank all former and current members of the Reber lab for discussion and helpful advice, in particular Christoph Hentschel and Soma Zsoter for technical assistance. S.R. acknowledges funding by the IRI Life Sciences (Humboldt-Universität zu Berlin, Excellence Initiative/DFG). W.H. was supported by the Alliance Berlin Canberra co-funded by a grant from the Deutsche Forschungsgemeinschaft (DFG) for the International Research Training Group (IRTG) 2290 and the Australian National University. C.K. thanks the Deutsche Forschungsgesellschaft (DFG, JA 2589/1-1). C.K. and M.A. thank Steve Simmert and Tobias Jachowski former and current members of the Schäffer lab.
    Keywords: Biophysics ; Cell Biology ; Microscopy
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Geisterfer, Z. M., Oakey, J., & Gatlin, J. C. . Microfluidic encapsulation of Xenopus laevis cell-free extracts using hydrogel photolithography. STAR Protocols, 1(3), (2020): 100221, doi:10.1016/j.xpro.2020.100221.
    Description: Cell-free extract derived from the eggs of the African clawed frog Xenopus laevis is a well-established model system that has been used historically in bulk aliquots. Here, we describe a microfluidic approach for isolating discrete, biologically relevant volumes of cell-free extract, with more expansive and precise control of extract shape compared with extract-oil emulsions. This approach is useful for investigating the mechanics of intracellular processes affected by cell geometry or cytoplasmic volume, including organelle scaling and positioning mechanisms. For complete details on the use and execution of this protocol, please refer to Geisterfer et al. (2020).
    Description: This work was made possible by an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under grant no. 2P20GM103432. It was also supported by additional funding provided by the NIGMS under grant no. R01GM113028, the NSF Faculty CAREER Program under award no. BBBE 1254608, Whitman Center fellowships at the Marine Biological Laboratory, and the Biomedical Scholars program of the Pew Charitable Trusts. We thank Drs. Aaron Groen and Tim Mitchison for their intellectual contributions and involvement in some of the pioneering experiments that set the foundation for this approach.
    Keywords: Biophysics ; Cell Biology ; Cell isolation ; Microscopy ; Model Organisms
    Repository Name: Woods Hole Open Access Server
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  • 8
    ISSN: 1432-1939
    Keywords: Donal integration ; Herbivory ; Compensation ; Aster ; Solidago
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We compared the growth, phenology and leaf demography of partly defoliated, connected shoots with that of partly defoliated, severed shoots in four old-field perennials (Solidago canadensis, S. altissima, S. gigantea, Aster lanceolatus) with differing genet architectures (rhizome systems), in a common garden and in the field. Our main hypothesis was that defoliation would have fewer negative effects on shoot performance if shoots were connected than if their rhizomes were severed. Since degree of clonal integration is related to differences in genet architecture, our second hypothesis was that the effects of defoliation would be less pronounced in more integrated than in less integrated clones. Removing about 50% of the total leaf area from shoots had different effects depending on plant species, shoot density, and in particular whether rhizome connections between shoots were left intact or severed. In agreement with our prediction, experimentally isolated shoots in the field or in high density clumps in the garden suffered the most from defoliation, while shoots with intact connections or in low density clumps suffered the least. Our second prediction was neither confirmed nor falsified in the present study. Solidago altissima showed overcompensation in response to simulated herbivory in the common garden, i.e. defoliated shoots grew faster and were larger at harvest than their non-defoliated neighbours.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Protoplasma 161 (1991), S. 111-122 
    ISSN: 1615-6102
    Keywords: Aster ; Fungus ; Filament ; Microtubule ; Mitosis ; Nectria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Microtubules (MTs) in the mitotic asters of the fungusNectria haematococca (teleomorph ofFusarium solani f. sp.pisi) pull on the spindle pole bodies (SPBs) during anaphase. To elucidate the structural basis of astral forces, we conducted an ultrastructural study using primarily freeze-substitution, three-dimensional reconstruction, and computerized numerical data acquisition and analysis. The asters were composed of numerous (68–171), mostly short (〈0.5 μm) MTs and varied widely in total MT length (34–83 μm). Both the number and total length of MTs varied up to twofold or more among asters, even between the two asters of the same mitotic apparatus (MA). Surprisingly, less than one half (38%) of the MTs in each aster were attached to the SPB. Both the number and total length of these polar MTs varied up to twofold between the two asters of the same MA. Some asters included MTs oriented back toward the opposite SPB, whereas others did not, and the number and total length of such MTs varied among asters. These results are best interpreted by assuming that astral MTs inN. haematococca have a rapid rate of turnover and exhibit dynamic instability. Any of these parameters of astral architecture could vary during mitosis and thereby give rise to the oscillations of the mitotic apparatus that occur during anaphase B by generating unequal and fluctuating forces in the two sister asters. Astral MTs were arranged asymmetrically around the astral axis, and this asymmetry could produce the lateral movements of the SPB that occur during anaphase B. An apparently extensive system of 10nm filaments occurred in these cells, and some astral MTs were associated either terminally (at the plasma membrane) or laterally with these filaments. Such associations could be involved in the development and maintenance of astral forces.
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  • 10
    ISSN: 1615-6102
    Keywords: Aster ; Bridge ; Fungus ; Microtubule ; Mitosis ; Spindle
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Previous studies have shown that in the fungusNectria haematococca (the sexual stage ofFusarium solani f. sp.pisi), the central spindle regulates the rate at which the asters pull apart the spindle pole bodies (SPBs) during anaphase B. These controlled movements are likely to be dependent upon lateral interactions between the microtubules (MTs) of both the central spindle and the asters. Since molecular bridges between MTs are known to play structural and motive roles in MT-based activities, such bridges are likely to be present in both of these areas of the mitotic apparatus. Therefore, in this study we have examined the potential for bridging between MTs, and the arrangement of intermicrotubule bridges in the mitotic apparatus ofN. haematococca. Using three-dimensional reconstruction analysis of serial thin sections, we found that 70% of the MTs in anaphase A central spindles, 902–100% in anaphase B spindles, and an average of 46% of astral MTs were sufficiently close to each other (i.e., within 70 nm center-to-center) for bridging to occur. Structures resembling intermicrotubule bridges were seen in electron micrographs between parallel MTs of both the central spindle and the asters. Microdensitometer-computer correlation analysis of the putative bridges identified them as having a nonrandom arrangement along the MT that was compatible with a 14-dimer helical superlattice. Intermicrotubule bridges in the anaphase B central spindle could: (i) enhance its strength by bundling the MTs, (ii) stabilize a portion of the MTs against depolymerization, thereby allowing the spindle to persist to an advanced stage of elongation, and (iii) generate forces within the spindle that counter the pull of the asters, thus regulating the rate of spindle elongation. In the aster, intermicrotubule bridges could increase the amount of astral pulling force applied to the SPB by (i) generating intertubule motive forces and/or (ii) enlarging the functional domain of the aster through structural linkages between polar MTs and free MTs.
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