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  • Other Sources  (86)
  • John Wiley & Sons, Inc.  (39)
  • GEOMAR  (28)
  • GEOMAR Helmholtz Centre for Ocean Research Kiel  (19)
  • 2020-2022  (86)
  • 1
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    GEOMAR Helmholtz Centre for Ocean Research Kiel
    In:  [Software]
    Publication Date: 2021-12-21
    Description: A slim python library to link maps and sampling data with prediction methods. PyQuickMaps can do interpolation (with scipy.interpolate.griddata), kriging (with pykrige) and random forest regression (with sklearn.ensemble.RandomForestRegressor). It also features plotting nice geographical maps with matplotlib and storing those to geotiff with rasterio. Coordinate transforms are managed internally with osgeo/gdal.
    Type: Software , NonPeerReviewed
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  • 2
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    GEOMAR Helmholtz Centre for Ocean Research Kiel
    In:  Alkor-Berichte, AL561 . GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany, 34 pp.
    Publication Date: 2021-11-23
    Description: The AL561 cruise was conducted in the framework of the project APOC (“Anthropogenic impacts on Particulate Organic Carbon cycling in the North Sea”). This collaborative project between GEOMAR, AWI, HEREON, UHH, and BUND is to understand how particulate organic carbon (POC) cycling contributes to carbon sequestration in the North Sea and how this ecosystem service is compromised and interlinked with global change and a range of human pressures include fisheries (pelagic fisheries, bottom trawling), resource extraction (sand mining), sediment management (dredging and disposal of dredged sediments) and eutrophication. The main aim of the sampling activity during AL561 cruise was to recover undisturbed sediment from high accumulation sites in the Skagerrak/Kattegat and to subsample sediment/porewater at high resolution in order to investigate sedimentation transport processes, origin of sediment/POC and mineralization processes over the last 100- 200 years. Moreover, the actual processes of sedimentation and POC degradation in the water column and benthic layer will be addressed by sampling with CTD and Lander devices. In total 9 hydroacoustic surveys (59 profiles), 4 Gravity Corer, 7 Multicorer, 3 Lander and 4 CTD stations were successfully conducted during the AL561 cruise.
    Type: Report , NonPeerReviewed
    Format: text
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  • 3
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    GEOMAR
    In:  [Software]
    Publication Date: 2021-11-09
    Description: With this script, the Meridional Overturning Circulation (MOC) can be computed from NEMO ocean-model output for the whole globe or the Atlantic (AMOC), Indic (IMOC) and Pacific (PMOC) subbasins. The MOC is computable in z- and sigma coordinates. Moreover, for nested configurations, it is possible to combine data from both host and nest grids. Finally, it is possible to take into account of that the ORCA model grid is curvilinear north of 20°N: it is possible to compute the northward velocity component from the velocity field in x- and y- directions and to sum up the meridional flux over latitudional bands instead of in x-direction. When both steps are applied, the resulting MOC shows however strong variability in meridional direction. It needs to be clarified, whether this is realistic or not. The software is provided in the form of the jupyter notebook "MOC.ipynb" which includes more informations on the possibilites of the computations and an extensive appendix section with comparisons to computations with cdftools, as well as with details on the computation of the MOC including nest data and taking the curvilinearity of the grid into account. Necessary python modules are listed at the beginning of the document.
    Type: Software , NonPeerReviewed
    Format: archive
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  • 4
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    GEOMAR
    In:  GEOMAR, Kiel, Germany, 17 pp.
    Publication Date: 2021-11-04
    Description: CMSY++ is an advanced state-space Bayesian method for stock assessment that estimates fisheries reference points (MSY, Fmsy, Bmsy) as well as status or relative stock size (B/Bmsy) and fishing pressure or exploitation (F/Fmsy) from catch and (optionally) abundance data, a prior for resilience or productivity (r), and broad priors for the ratio of biomass to unfished biomass (B/k) at the beginning, an intermediate year, and the end of the time series. For the purpose of this User Guide, the whole package is referred to as CMSY++ whereas the part of the method that deals with catch-only data is referred to as CMSY (catch MSY), and the part of the method that requires additional abundance data is referred to as BSM (Bayesian Schaefer Model). Both methods are based on a modified Schaefer surplus production model (see paper cited above for more details). The main advantage of BSM, compared to other implementations of surplus production models, is the focus on informative priors and the acceptance of short and incomplete (i.e., fragmented, with missing years) abundance data. This document provides a simple step-by-step guide for researchers who want to apply CMSY++ to their own data.
    Type: Report , NonPeerReviewed
    Format: text
    Format: archive
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  • 5
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    GEOMAR
    In:  GEOMAR, Kiel, Germany, 2 pp.
    Publication Date: 2021-10-29
    Description: MSM89 – Bridgetown/Barbados – Bridgetown/Barbados 2. Wochenbericht – MARIA S. MERIAN - MSM89 20.-26.01.2020
    Type: Report , NonPeerReviewed
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  • 6
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    GEOMAR
    In:  GEOMAR, Kiel, Germany, 2 pp.
    Publication Date: 2021-10-29
    Description: MSM89 – Bridgetown/Barbados – Bridgetown/Barbados 1. Wochenbericht – MARIA S. MERIAN - MSM89 14.-19.01.2020
    Type: Report , NonPeerReviewed
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  • 7
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    GEOMAR
    In:  GEOMAR, Kiel, Germany, 2 pp.
    Publication Date: 2021-10-29
    Description: MSM89 – Bridgetown/Barbados – Bridgetown/Barbados 3. Wochenbericht – MARIA S. MERIAN - MSM89 27.01.-02.02.2020
    Type: Report , NonPeerReviewed
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  • 8
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    GEOMAR Helmholtz Centre for Ocean Research Kiel
    In:  [Software]
    Publication Date: 2021-10-04
    Description: Post-processing of sonar data is a common task in ocean science. This includes the creation of bathymetric maps, the use of seafloor backscatter information to determine sediment types as well as the analysis of water column data, e.g. for the assessment of fish populations or the quantification of gas releases from the seafloor at methane seeps. Many commercial and free post processing tools for these tasks exist, but since there is a wide range of sonar manufactures with individual data formats not every format is supported by these applications. The DSM Sonar Software is a collection of software libraries and applications to facilitate access to sonar data of various formats and convert between different formats. The conversion of an unsupported format into a commonly supported one makes it possible to process sonar data with existing post processing tools. The target users for our converters are scientists and hydrographers. The different data format descriptions and sonar tool libraries are valuable for software developers in the field of automated sonar data analysis. The modular approach and structure of the DSM Sonar Software enables that developers pick only necessary components to include them in their own software project.
    Type: Software , NonPeerReviewed
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  • 9
    Publication Date: 2021-09-29
    Description: It is well accepted that summer precipitation can be altered by soil moisture condition. Coupled land surface – atmospheric models have been routinely used to quantify soil moisture – precipitation feedback processes. However, most of the land surface models (LSMs) assume a vertical soil water transport and neglect lateral terrestrial water flow at the surface and in the subsurface, which potentially reduces the realism of the simulated soil moisture – precipitation feedback. In this study, the contribution of lateral terrestrial water flow to summer precipitation is assessed in two different climatic regions, Europe and West Africa, for the period June–September 2008. A version of the coupled atmospheric‐hydrological model WRF‐Hydro with an option to tag and trace land surface evaporation in the modelled atmosphere, named WRF‐Hydro‐tag, is employed. An ensemble of 30 simulations with terrestrial routing and 30 simulations without terrestrial routing is generated with random realizations of turbulent energy with the stochastic kinetic energy backscatter scheme, for both Europe and West Africa. The ensemble size allows to extract random noise from continental‐scale averaged modelled precipitation. It is found that lateral terrestrial water flow increases the relative contribution of land surface evaporation to precipitation by 3.6% in Europe and 5.6% in West Africa, which enhances a positive soil moisture – precipitation feedback and generates more uncertainty in modelled precipitation, as diagnosed by a slight increase in normalized ensemble spread. This study demonstrates the small but non‐negligible contribution of lateral terrestrial water flow to precipitation at continental scale.
    Description: Ensembles of coupled atmospheric ‐ hydrological simulations are presented for a summer season in Europe and West Africa. The model is enhanced with a water tagging procedure to evaluate the fate of land surface evaporation. The figure shows the change in continental precipitation recycling, that is the fraction of precipitation originating from land surface evaporation, induced by the consideration of lateral terrestrial water flow in the coupled simulations.
    Description: German Science Foundation
    Keywords: 551.48 ; continental scale ; coupled modelling ; ensemble ; feedback ; summer precipitation ; terrestrial hydrology
    Type: map
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  • 10
    Publication Date: 2021-09-29
    Description: Dinitrogen (N2) fixation is a major source of bioavailable nitrogen to oligotrophic ocean communities. Yet, we have limited understanding how ongoing climate change could alter N2 fixation. Most of our understanding is based on short‐term laboratory experiments conducted on individual N2‐fixing species whereas community‐level approaches are rare. In this longer‐term in situ mesocosm study, we aimed to improve our understanding on the role of rising atmospheric carbon dioxide (CO2) and simulated deep water upwelling on N2 and carbon (C) fixation rates in a natural oligotrophic plankton community. We deployed nine mesocosms in the subtropical North Atlantic Ocean and enriched seven of these with CO2 to yield a range of treatments (partial pressure of CO2, pCO2 = 352–1025 μatm). We measured rates of N2 and C fixation in both light and dark incubations over the 55‐day study period. High pCO2 negatively impacted light and dark N2 fixation rates in the oligotrophic phase before simulated upwelling, while the effect reversed in the light N2 fixation rates in the bloom decay phase after added nutrients were consumed. Dust deposition and simulated upwelling of nutrient‐rich deep water increased N2 fixation rates and nifH gene abundances of selected clades including the unicellular diazotrophic cyanobacterium clade UCYN‐B. Elevated pCO2 increased C fixation rates in the decay phase. We conclude that elevated pCO2 and pulses of upwelling have pronounced effects on diazotrophy and primary producers, and upwelling and dust deposition modify the pCO2 effect in natural assemblages.
    Description: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Description: Exzellenzcluster Ozean der Zukunft http://dx.doi.org/10.13039/501100010783
    Description: H2020 Environment http://dx.doi.org/10.13039/100010681
    Description: Villum Foundation http://dx.doi.org/10.13039/100008398
    Description: Horizon 2020 http://dx.doi.org/10.13039/100010661
    Description: Research Foundation http://dx.doi.org/10.13039/100005930
    Description: Federal Ministry of Education and Research http://dx.doi.org/10.13039/501100002347
    Keywords: 551 ; subtropical North Atlantic Ocean ; N2 fixation ; C fixation
    Type: map
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