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  • 1
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    BioMed Central
    In:  http://aquaticcommons.org/id/eprint/25902 | 20794 | 2018-09-26 06:38:40 | 25902 | Department of Biological Sciences, National University of Singapore
    Publication Date: 2021-07-16
    Description: Background. Macroinvertebrates such as non-biting midges (Chironomidae: Diptera) are important components of freshwater ecosystems. However, they are often neglected in biodiversity and conservation research because invertebrate species richness is difficult and expensive to quantify with traditional methods. We here demonstrate that Next Generation Sequencing barcodes (“NGS barcodes”) can provide relief because they allow for fast and large-scale species-level sorting of large samples at low cost. Results. We used NGS barcoding to investigate the midge fauna of Singapore’s swamp forest remnant (Nee Soon Swamp Forest). Based on 〉 14.000 barcoded specimens, we find that the swamp forest maintains an exceptionally rich fauna composed of an observed number of 289 species (estimated 336 species) in a very small area (90 ha). We furthermore barcoded the chironomids from three surrounding reservoirs that are located in close proximity. Although the swamp forest remnant is much smaller than the combined size of the freshwater reservoirs in the study (90 ha vs. 〉 450 ha), the latter only contains 33 (estimated 61) species. We show that the resistance of the swamp forest species assemblage is high because only 8 of the 314 species are shared despite the close proximity. Moreover, shared species are not very abundant (3% of all specimens). A redundancy analysis revealed that ~ 21% of the compositional variance of midge communities within the swamp forest was explained by a range of variables with conductivity, stream order, stream width, temperature, latitude (flow direction), and year being significant factors influencing community structure. An LME analysis demonstrates that the total species richness decreased with increasing conductivity. Conclusion. Our study demonstrates that midge diversity of a swamp forest can be so high that it questions global species diversity estimates for Chironomidae, which are an important component of many freshwater ecosystems. We furthermore demonstrate that small and natural habitat remnants can have high species turnover and can be very resistant to the invasion of species from neighboring reservoirs. Lastly, the study shows how NGS barcodes can be used to integrate specimen- and species-rich invertebrate taxa in biodiversity and conservation research.
    Keywords: Ecology ; Environment ; Limnology
    Repository Name: AquaDocs
    Type: article , TRUE
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  • 2
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    University of Florida, Florida Cooperative Fish and Wildlife Research Unit | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/1001 | 3 | 2011-09-29 21:17:28 | 1001 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-05
    Description: The value of the natural resources of the White River Basin (Basin), AR isrecognized by the area's designation as a "Wetland of International Importance". TheBasin constitutes one of the Nation's largest remaining intact forested wetlandlandscapes, second only to the Atchafalya Basin. It supports the North Americancontinent's largest concentration of over-wintering mallard ducks, a world-class troutfishery, the last vestige of a big river fishery remaining in the Mississippi River Basin,and numerous threatened and endangered species. The continued viability of thiswetland ecosystem depends on the suitability of the hydrologic environment to theresident flora and fauna. Numerous modifications of the Basin hydrologic features in thepast century have seriously impaired the sustainability of these resources. The Basinwidealterations of hydrologic processes (e.g., impoundment and regulatory releases offlows and volumes in the upper reaches, navigational modifications of lower reaches, andconsumptive demands for agricultural use throughout) have affected the hydrology of thesystem profoundly. The result is highly regulated flows and stages, vastly alteredhydrologic patterns, over-stabilized water levels, and disruption of seasonal waterdistribution patterns. Given the critical nature of hydrology in regulating the structureand function of wetland ecosystems, the impacts have been devastating, particularly tothe critical bottomland hardwoods that support the Basin's fish and wildlife resources.To date these piece-meal, system-wide, hydrologic alterations have cornmutativelydegraded the habitat value of this resource for fish and wildlife in the Basin, and havelead to changes in their numbers and distributions. In spite of the enormous stakesinvolved, there has been no comprehensive characterization of the Basin hydrology.System alterations such as channel deepening, dam construction, water allocationplans, and flood control measures are currently pending. These projects will potentiallyhrther modify the hydrologic environments of the Basin, and no doubt require mitigationmeasures. In addition, there is genuine interest in restoring aspects of the Basin's historichydrologic regime within some set of reasonable limits. In order to proceed with thiseffort, the anticipated effects of these modifications and restorations on the Basin ecologyrequire thorough study of the area's historic hydrology, so that connectivity among Basinprecipitation patterns, flow fluctuations, and land use changes can be made. A basinhydrologic characterization is an initial component of this effort. The focus of this effortwas to determine and assemble the data set from which characterization of the hydrologicenvironments of the Basin using historic and recent water level, flow, (primarily byUSGS-WRD) at locations throughout the Basin could proceed. ( Document has 11 pages.)
    Description: Research Work Order no. 203
    Keywords: Conservation ; Biology ; Limnology ; Environment ; Policies ; White River Basin ; Arkansas ; hydrology ; species
    Repository Name: AquaDocs
    Type: monograph
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  • 3
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    Florida Cooperative Fish and Wildlife Research Unit, University of Florida | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/1063 | 3 | 2011-09-29 21:12:04 | 1063 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-05
    Description: Loxahatchee can be grouped into three zones according to the patterns of change of treeislands observed from 1950 to 1991. 1 ) the edge ofthe refuge adjacent to the canals, 2) the eastern interiorof the refuge, and 3) the western interior ofthe refuge. The general trend is for tree islandsAlong the edge of the refuge to have decreased insize, number, and percent cover, while those on theinterior increased in size, nunber, and percentcover.Results from this study illustrate the importanceof flow magnitude as well as hydroperiodand depth in stucturing patterns of tree islandswithin this peat wetland. Restoration of historichydroperiods and depths without historic flow patternsmay not be sufficient to restore or maintainthe historic pattern and function of the system. (60 pages)
    Keywords: Conservation ; Biology ; Limnology ; Arthur R. Marshall Loxahatchee National Wildlife Refuge ; Florida ; hydrology ; tree islands ; water regimes
    Repository Name: AquaDocs
    Type: monograph
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  • 4
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    Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/1071 | 3 | 2011-09-29 21:11:25 | 1071 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-05
    Description: We present a new modeling method for use in large-scale physical systems, such as the Everglades ecosystem.The current work that has been done in the ATLSS (Across-Trophic-Level System Simulation) project-whichfocuses on simulating key Everglades system components-relies on code integration. While this represents anecessary first step in analyzing the dynamics of species within the Everglades, it falls short of true modelintegration. We have constructed a methodology called object-oriented physical modeling (OOPM), which allowsa comprehensive knowledge representation to be constructedfor large-scale systems. OOPM enforces theidea that an implementation ofcomputer code can be accomplished in an incremental fashion by starting with aconceptual model and progressing to more detailed models. During this evolutionary procedure, a minimal amountof code is written, since the emphasis is on developing the conceptual model so that it not only represents theintuitive aspects ofthe model, but is also executable. OOPM provides a kind of "blueprint" for ecologists, biologistsand hydrologists to communicate and integrate models effectively. (14 page document)
    Keywords: Conservation ; Management ; Engineering ; Limnology ; Everglades ; Florida ; ecosystem ; modeling ; ATLSS (Across-Trophic-Level System Simulation) ; restoration
    Repository Name: AquaDocs
    Type: article
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  • 5
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    Department of Wildlife Ecology and Conservation, Everglades Research and Education Center, University of Florida | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/1117 | 3 | 2011-09-29 21:06:20 | 1117 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-05
    Description: The purpose of this project was to conduct a pilot project to determine the feasibility ofperforming a study to evaluate the ecological role of alligator holes in the Everglades system andto develop interagency support and a scope of work for future studies. The objectives for the firstyear were to: 1. Review existing information on the ecology of alligator holes and conduct a survey oncurrent complimentary studies.2. Conduct an ecological survey. including mapping and description. of existing alligatorholes.3. Establish interagency cooperation and support for an Alligator Hole Project. Based onthis interagency consultation develop a consensus for priorities for future research andintegration into ecosystem restoration efforts.(96 page document)
    Description: Final annual report for year 1. Submitted to: Everglades Agricultural Area Environmental Protection District
    Keywords: Biology ; Limnology ; alligator holes ; Everglades ; Florida
    Repository Name: AquaDocs
    Type: monograph
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  • 6
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    Florida Cooperative Fish and Wildlife Research Unit , University of Florida | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/1077 | 3 | 2011-09-29 21:11:52 | 1077 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-05
    Description: The Cabo Rojo Salt Flats, at the southwestern tip ofPuerto Rico, provide important autumn stopover and winteringhabitat for migratory shorebirds. I studied the abundanceand distribution of shorebirds and their food resources atthis site during autumn of 1990 and 1991.Small calidrids (primarily Calidris pusilla and C.mauri) were the most abundant shorebirds at the salt flats.The maximum weekly counts of small calidrids in 1990 (2,690)and 1991 (3,532) occurred in mid October. Calidrids foragedprimarily in the Fraternidad lagoon system; roosting tookplace most often at the neighboring Candelaria Lagoon.The macroinvertebrate prey important to calidrids in theFraternidad system were Dasyhelea (Diptera), Trichocorixa(Hemiptera), and Artemia (Anostraca). Changes in invertebrateabundance coincided with fluctuations in salinity. (100 page document)
    Description: Research Work Order no. 78
    Keywords: Conservation ; Management ; Biology ; Limnology ; Shorebirds ; Cabo Rojo Salt Flats ; Puerto Rico ; migration ; Calidrids ; Candelaria Lagoon
    Repository Name: AquaDocs
    Type: monograph
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  • 7
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    Florida Cooperative Fish and Wildlife Research Unit , University of Florida | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/1079 | 3 | 2011-09-29 21:09:38 | 1079 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-05
    Description: This goals of this research and monitoring effort are to document nesting effortand roughly categorize success of nesting by wading birds in the central Everglades ofFlorida, and to investigate the causes of nonbreeding in a high proportion of the adultwading birds in the ecosystem The latter goal has focused on breeding of White Ibises(Eudocimus albus) and has been approached through 1) understanding the nutritional,behavioral, and hormonal aspects of normal breeding in a captive colony ofScarlet Ibises(considered conspecific to White Ibises) in central Florida, and 2) comparing breeding andnonbreeding wild White Ibises in the Everglades, in their physiology, nutritional state,breeding phenology, contaminant load, and hormonal status. This report covers work onthis project between January and November, 2000. (81 page docoument)
    Description: Research Work Order no. 191
    Description: 2000 draft Final Annual Report to The U. S. Army Corps of Engineers Jacksonville, Florida
    Keywords: Conservation ; Management ; Biology ; Limnology ; Wading birds ; nesting success ; Everglades ; Water Conservation Area 1 ; Water Conservation Area 2 ; Water Conservation Area 3 ; Florida ; water levels ; Loxahatchee National Wildlife Refuge ; Northeast Shark Slough (NESS) ; White Ibis ; Eudocimus albus
    Repository Name: AquaDocs
    Type: monograph
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  • 8
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    Florida Cooperative Fish and Wildlife Research Unit , University of Florida | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/1075 | 3 | 2011-09-29 21:11:45 | 1075 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-05
    Description: This project was initiated to continue monitoring reproductive responses of wadingbirds in the central Everglades, and to investigate two areas of research considered key tounderstanding and managing wading birds: nestling energetics, and factors affecting foodavailability. This report summarizes the first of two years of work. (101 page document)
    Description: Final Report to The U. S. Army Corps of Engineers Jacksonville, Florida
    Keywords: Conservation ; Management ; Biology ; Limnology ; Wading birds ; nesting success ; Everglades ; Water Conservation Area 1 ; Water Conservation Area 2 ; Water Conservation Area 3 ; Florida ; water levels ; Loxahatchee National Wildlife Refuge ; Northeast Shark Slough (NESS)
    Repository Name: AquaDocs
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  • 9
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    Florida Cooperative Fish and Wildlife Research Unit , University of Florida | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/1073 | 3 | 2011-09-29 21:11:39 | 1073 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-05
    Description: This report documents breeding numbers, reproductive success, and foragingdispersion of long-legged wading birds in the Water Conservation Areas (WCAs) of theEverglades during the first six months of 1993. Briefly, the 1993 spring had abnormallyhigh water and windy conditions throughout the season, and produced poor nesting effort,low to moderate nesting success, and low production of young. Some species, like WoodStorks and White Ibises, did not nest at all in the WCAs. Others, like Great Egrets andTricolored Herons, showed considerably tenacity under the extremely poor nestingconditions. The 1993 season provided a rare chance to record the reproductive responses ofwading birds during sustained high water conditions. (108 page document)
    Description: Research Work Order no. 110
    Description: Final Report to The U. S. Army Corps of Engineers Jacksonville, Florida
    Keywords: Conservation ; Management ; Biology ; Limnology ; Wading birds ; nesting success ; Everglades ; Water Conservation Area 1 ; Water Conservation Area 2 ; Water Conservation Area 3 ; Florida ; water levels ; Loxahatchee National Wildlife Refuge ; Northeast Shark Slough (NESS)
    Repository Name: AquaDocs
    Type: monograph
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  • 10
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    University of Florida, Department of Fisheries | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/1084 | 3 | 2011-09-29 21:12:43 | 1084 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-05
    Description: This study investigated the status of fish communitiesin 12 naturally acid Florida lakes. The small, shallowlakes were located in the Ocala National Forest, the TrailRidge, and panhandle Florida; regions where lakes have lowacid neutralizing capacities and are considered sensitive tofurther acidification from anthropogenic sources.Fifteen species from seven families were capturedduring mark-recapture sampling. Warmouth (Lepomis gulosus)was the only cosmopolitan species in the study. Bluegill(Lepomis macrochirus) and largemouth bass (Micropterussalmoides), collected from 11 and 10 lakes, respectively,were also widely distributed species. Total fish abundanceand biomass were not related to lake pH or total alkalinity.(Document has 202 pages)
    Description: Research Work Order no. 73
    Description: PhD
    Description: This document was Cecil Jenning's Ph.D. dissertation submitted to the Department of Fisheries and Aquaculture, University of Florida.
    Keywords: Biology ; Limnology ; Chemistry ; lakes ; Florida ; fishes ; community ; water chemistry
    Repository Name: AquaDocs
    Type: monograph
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    Format: 202
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