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  • climate change  (49)
  • gene expression  (49)
  • Springer  (98)
  • Blackwell Publishing Ltd
  • 2000-2004  (98)
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  • Springer  (98)
  • Blackwell Publishing Ltd
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Year
  • 1
    Electronic Resource
    Electronic Resource
    Late-glacial and early-Holocene Trichoptera (Insecta) from Kråkenes Lake, western Norway (2000)
    Springer
    Journal of paleolimnology 23 (2000), S. 49-56 
    Details
    ISSN: 1573-0417
    Keywords: Trichoptera ; caddisflies ; late glacial ; Allerød ; Younger Dryas ; early Holocene ; Kråkenes ; palaeolimnology ; climate change
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences
    Notes: Abstract Fossil Trichoptera (caddisfly) remains have been identified and quantitatively recorded in the late-glacial and early-Holocene sediments from Kråkenes Lake, western Norway. The sediment sequence was deposited between 12,300 and 8850 14C BP, covering the Allerød, Younger Dryas, and early-Holocene periods. The first Trichoptera were recorded at 12,000 14C BP, and during the Allerod a diverse assemblage of Limnephilidae taxa developed in the lake. By about 11,400 14C BP the relatively thermophilous Polycentropus flavomaculatus and Limnephilus rhombicus were present, suggesting that the summer water temperature was at least 17 °C. This temperature fell by 5-8 °C at the start of the Younger Dryas, and the thermophilous taxa were replaced within 20-40 14C yrs by Apatania spp., including the arctic-alpine A. zonella, suggesting a maximum summer water temperature of 10-12 °C. The Trichoptera assemblage was impoverished in numbers and in diversity over the next 200 yrs as the severe conditions of the Younger Dryas developed. As soon as temperatures rose and glacial meltwater and silt input ended about 700 14C yrs later, the resident Apatania assemblage expanded immediately, within 10 yrs. About 130 yrs later, thermophilous taxa replaced Apatania, and a much more diverse assemblage than in the Allerod occupied the varied habitats made available by the development of the Holocene lake ecosystem. The 130 yr delay may have been caused by a gradual temperature increase crossing a critical threshold, or by the time taken for thermophilous taxa to migrate from their Younger Dryas refugia.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008064831048
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  • 2
    Electronic Resource
    Electronic Resource
    Evidence for mid-Eemian cooling in continental climatic record from Lake Baikal (2000)
    Springer
    Journal of paleolimnology 23 (2000), S. 365-371 
    Details
    ISSN: 1573-0417
    Keywords: Lake Baikal ; diatoms ; biogenic silica ; Eemian ; climate change ; Siberia
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences
    Notes: Abstract The discussion on climatic instability observed in Greenland ice cores during the Eemian period (substage 5e) resulted in discovery of a pronounced mid-Eemian cooling event. We report that the mid-Eemian cooling is found for the first time in the biogenic silica climatic record and microfossil abundance record of Lake Baikal. Timing of this event in Lake Baikal correlates well with timing of the European pollen records and marine sedimentary records. The presence of the mid-Eemian cooling signal in the Lake Baikal record suggests a much closer link between Asian climate influenced by strong pressure fields over the vast land masses and the climate-controlling processes in the North Atlantic during interglacial periods, than what was generally believed. Furthermore, the Lake Baikal record suggests that after the mid-Eemian cooling, the climatic conditions returned close to the warmth of the 5e optimum and thus argues that the warm conditions of the last interglacial persisted in Siberia throughout 5e, and did not end with the mid-Eemian cooling as suggested by several published marine records.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008188100542
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  • 3
    Electronic Resource
    Electronic Resource
    Holocene lake sediment records of Arctic hydrology (2000)
    Springer
    Journal of paleolimnology 24 (2000), S. 1-13 
    Details
    ISSN: 1573-0417
    Keywords: Arctic ; Holocene ; paleohydrology ; paleolimnology ; climate change
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences
    Notes: Abstract Although paleoclimatic research in the Arctic has most often focused on variations in temperature, the Arctic has also experienced changes in hydrologic balance. Changes in Arctic precipitation and evaporation rates affects soils, permafrost, lakes, wetlands, rivers, ice and vegetation. Changes in Arctic soils, permafrost, runoff, and vegetation can influence global climate by changing atmospheric methane and carbon dioxide concentrations, thermohaline circulation, and high latitude albedo. Documenting past variations in Arctic hydrological conditions is important for understanding Arctic climate and the potential response and role of the Arctic in regards to future climate change. Methods for reconstructing past changes in Arctic hydrology from the stratigraphic, isotopic, geochemical and fossil records of lake sediments are being developed, refined and applied in a number of regions. These records suggest that hydrological variations in the Arctic have been regionally asynchronous, reflecting the impacts of different forcing factors including orbitally controlled insolation changes, changes in geography related to coastal emergence, ocean currents, sea ice extent, and atmospheric circulation. Despite considerable progress, much work remains to be done on the development of paleohydrological proxies and their application to the Arctic.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008100714795
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  • 4
    Electronic Resource
    Electronic Resource
    Diatom transfer-functions for quantifying past air temperature, pH and total organic carbon concentration from lakes in northern Sweden (2000)
    Springer
    Journal of paleolimnology 24 (2000), S. 109-123 
    Details
    ISSN: 1573-0417
    Keywords: diatoms ; climate change ; temperature ; pH ; transfer functions ; lake sediments
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences
    Notes: Abstract The relationships between diatoms (Bacillariophyceae) in surface sediments of lakes and summer air temperature, pH and total organic carbon concentration (TOC) were explored along a steep climatic gradient in northern Sweden to provide a tool to infer past climate conditions from sediment cores. The study sites are in an area with low human impact and range from boreal forest to alpine tundra. Canonical correspondence analysis (CCA) constrained to mean July air temperature and pH clearly showed that diatom community composition was different between lakes situated in conifer-, mountain birch- and alpine-vegetation zones. As a consequence, diatoms and multivariate ordination methods can be used to infer past changes in treeline position and dominant forest type. Quantitative inference models were developed to estimate mean July air temperature, pH and TOC from sedimentary diatom assemblages using weighted averaging (WA) and weighted averaging partial least squares (WA-PLS) regression. Relationships between diatoms and mean July air temperature were independent of lake-water pH, TOC, alkalinity and maximum depth. The results demonstrated that diatoms in lake sediments can provide useful and independent quantitative information for estimating past changes in mean July air temperature (R2 jack = 0.62, RMSEP = 0.86 °C; R2 and root mean squared error of prediction (RMSEP) based on jack-knifing), pH (R2 jack = 0.61, RMSEP = 0.30) and TOC (R2 jack = 0.49, RMSEP = 1.33 mg l-1). The paper focuses mainly on the relationship between diatom community composition and mean July air temperature, but the relationships to pH and TOC are also discussed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008128014721
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  • 5
    Electronic Resource
    Electronic Resource
    A first estimate of organic carbon storage in Holocene lake sediments in Alberta, Canada (2000)
    Springer
    Journal of paleolimnology 24 (2000), S. 395-400 
    Details
    ISSN: 1573-0417
    Keywords: carbon storage ; lake sediment ; Holocene ; Canada ; climate change ; organic matter
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences
    Notes: Abstract This paper reports a first estimate of the Holocene lake sediment carbon pool in Alberta, Canada. The organic matter content of lake sediment does not appear to depend strongly on lake size or other limnological parameters, allowing a simple first estimate in which we assume all Alberta lake sediment to have the same organic matter content. Alberta lake sediments sequester about 15 g C m-2 yr-1, for a provincial total of 0.23 Tg C yr-1, or 2.3 Pg C over the Holocene. Alberta lakes may represent as much as 1/1700 of total global, annual permanent carbon sequestration.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008103605817
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  • 6
    Electronic Resource
    Electronic Resource
    Using a Crop/Soil Simulation Model and GIS Techniques to Assess Methane Emissions from Rice Fields in Asia. III. Databases (2000)
    Springer
    Nutrient cycling in agroecosystems 58 (2000), S. 179-199 
    Details
    ISSN: 1573-0867
    Keywords: climate change ; databases ; GIS ; methane ; rice ; soils ; weather
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract As part of a series of papers describing the use of a simulation model to extrapolate experimental measurements of methane (CH4) emissions from rice fields in Asia and to evaluate the large-scale effect of various mitigation strategies, the collation and derivation of the spatial databases used are described. Daily weather data, including solar radiation, minimum and maximum temperatures, and rainfall were collated from 46 weather stations from the five countries in the study, namely China, India, Indonesia, Philippines, and Thailand. Quantitative soil data relevant to the input requirements of the model were derived by combining data from the World Inventory of Soil Emissions (WISE) database, the ISIS database, and the FAO Digital Soil Map of the World (FAO-DSMW). These data included soil pH; organic carbon content; sand, silt, and clay fractions; and iron content for top and subsoil layers, and average values of bulk density and available water capacity for the whole profile. Data on the areas allocated to irrigated, rainfed, upland, and deepwater rice at the province or district level were derived from the Huke & Huke (1997) database developed at IRRI. Using a geographical information system (GIS), a series of georeferenced data sets on climate, soils, and land use were derived for each country, at the province or district level. A summary of the soil-related derived databases is presented and their applicationn for use in global change modeling discussed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1009898720354
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  • 7
    Electronic Resource
    Electronic Resource
    Preservation of Gene Expression Ratios Among Multiple Complex cDNAs After PCR Amplification: Application to Differential Gene Expression Studies (2000)
    Springer
    Journal of structural and functional genomics 1 (2000), S. 1-7 
    Details
    ISSN: 1570-0267
    Keywords: cDNA ; PCR cDNA ; TaqMan Analysis ; gene expression ; Pearson's correlation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Comparative gene expression studies are often limited by low availability of tissue and poor quality of extractable mRNA. Collective PCR amplification of minute quantities of mRNA has great potential for overcoming these limitations. However, there remains significant concern about the effects of amplification on the absolute and relative abundance of individual mRNAs that could complicate subsequent gene expression studies. To address this problem, we systematically compared the relative abundance of many specific mRNAs from complex cDNA preparations (from tissue and cultured cells) both before and after amplification by PCR. Our results demonstrated that, as expected, the absolute abundance of different mRNAs in a cDNA library is altered in an unpredictable manner by PCR amplification. However, we found that the concentration ratios of specific mRNAs among different cDNA preparations were routinely well conserved after PCR amplification. Thus, for the purpose of comparative expression studies for specific mRNAs in two (or more) complex cDNAs, PCR-amplified cDNA is equally useful as unamplified cDNA. These results provide a rigorous experimental validation and offer a theoretical treatment to support the utility of PCR amplified cDNA for differential gene expression studies. We conclude that the inherent difficulties in performing differential screening studies such as gene chip and array analyses on limited amounts of biological materials can be overcome by a PCR amplification step without compromising data quality.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1011337409258
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  • 8
    Electronic Resource
    Electronic Resource
    Dexamethasone induced cardiac hypertrophy in newborn rats is accompanied by changes in myosin heavy chain phenotype and gene transcription (2000)
    Springer
    Molecular and cellular biochemistry 209 (2000), S. 165-174 
    Details
    ISSN: 1573-4919
    Keywords: myosin heavy chain ; gene expression ; hypertrophy ; dexamethasone ; promoter function
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Abstract Cardiac hypertrophy has been observed in newborn infants treated with dexamethasone (DEX). This study was undertaken to examine whether DEX-induced hypertrophy in newborn rats is associated with redistribution of cardiac myosin heavy chain (MHC) isoforms and if so, the effects involve transcriptional regulation. Newborn rats were injected with either DEX (1 mg/kg/day; s.c.) or equivalent volume normal saline for 1, 3, 5, 7 or 9 days. Hypertrophy was quantified by heart dry/wet wt ratios, heart/body wt ratios, and total protein content of the myocardium. Changes in the expression of cardiac MHC mRNA were characterized by northern blot and slot blot analyses, using isoform specific probes for a- and β-MHC genes. DEX effect on α-MHC gene transcription was analyzed by transiently transfecting various α-MHC promoter/CAT reporter constructs into primary cultures of cardiac myocytes derived from one day old rat pups. DEX administration into newborn rats produced significant cardiac hypertrophy ranging from 23% at day 1 to 59% at 9 days. The hypertrophy was accompanied by immediate increase (83%) in steady state level of the α-MHC mRNA within one day and a maximum increase (148%) at 7 days of treatment. The steady state level of β-MHC mRNA declined by 25% at day 1 and a maximum decrease of 54% at day 7 of DEX treatment. The changes in MHC mRNA were also reflected in their protein levels as determined by V1 and V3 isozyme analysis. DEX treatment of primary cultures of cardiomyocytes following transfection with a-MHC promoter/CAT reporter constructs resulted in increased CAT expression in a dose dependent manner. The minimum α-MHC gene sequences responding to DEX treatment were located between the -200 to -74-bp region of the gene, resulting in 2-fold and 6-fold activation of CAT reporter after 0.05 and 0.1 mM doses of DEX, respectively. Our data indicate that DEX induced cardiac hypertrophy in newborn rats is accompanied by increased expression of α-MHC and decreased expression of β-MHC. The α-MHC effects are mediated in part through transcriptional mechanisms.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1007128300430
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  • 9
    Electronic Resource
    Electronic Resource
    Mechanisms of transcriptional activation of cAMP-responsive element-binding protein CREB (2000)
    Springer
    Molecular and cellular biochemistry 212 (2000), S. 5-9 
    Details
    ISSN: 1573-4919
    Keywords: transcriptional regulation ; gene expression ; coactivator ; repressor
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Abstract The CREB-CREM transcription factors are the main gene regulatory effectors of the cAMP signaling pathway. The investigations of this family of transcription factors had a profound impact on the understanding of signaling-induced gene transcription. Here we discuss some key aspects of the underlying biology, review transcriptional activation by CREB proteins through transcription cofactors and present novel insights into the context- and position-specific function of CREB on complex genes.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1007111818628
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  • 10
    Electronic Resource
    Electronic Resource
    Upstream regulatory elements in chick heme oxygenase-1 promoter: A study in primary cultures of chick embryo liver cells (2000)
    Springer
    Molecular and cellular biochemistry 209 (2000), S. 17-27 
    Details
    ISSN: 1573-4919
    Keywords: AP-1 ; cobalt chloride ; gene expression ; heme oxygenase ; oxidative stress ; sodium arsenite
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Notes: Abstract Previously, chick heme oxygenase-1 (cHO-1) gene was cloned by us and two regions important for induction by sodium arsenite were identified. These two regions were found to contain consensus sequences of an AP-1 (-1580 to -1573) and a MRE/cMyc complex (-52 to -41). In the current study, the roles of these two elements in mediating the sodium arsenite or cobalt chloride dependent induction of cHO-1 were investigated further. DNA binding studies and site-directed mutagenesis studies indicated that both the AP-1 and MRE/cMyc elements are important for the sodium arsenite induction, while cobalt chloride induction involves only the AP-1 element. Electrophoretic mobility shift assays showed that nuclear proteins binding to the AP-1 element was increased by both sodium arsenite or cobalt chloride treatment, whereas the binding of proteins to the MRE/cMyc element showed a high basal expression in untreated cells and the binding activity was only slightly increased by sodium arsenite treatment. Site-directed mutagenesis studies showed that, to completely abolish sodium arsenite induction, both the AP-1 and MRE/cMyc elements must be mutated; mutation of either element alone resulted in only a partial effect. In contrast, a single mutation at AP-1 element was sufficient to reduce the cobalt chloride induction almost completely. The MRE/cMyc complex plays a major role in the basal level expression, and shares some similarities to the upstream stimulatory factor element (USF) identified in the promoter regions of mammalian HO-1 genes and other stress regulated genes. Because sodium arsenite is known to cause oxidative stress and because activation of AP-1 proteins has been shown to be a key step in the oxidative stress response pathway, we also explored the possibility that the induction of the cHO-1 gene by sodium arsenite is mediated through oxidative stress pathway(s) by activation of AP-1 proteins. We found that pretreatment with antioxidants (N-acetyl cysteine or quercetin) reduced the induction of the endogenous cHO-1 message or cHO-1 reporter construct activities induced by sodium arsenite or cobalt chloride. These antioxidants also reduced the protein binding activities to the AP-1 element in the electrophoretic mobility shift assays. In summary, induction of the cHO-1 gene by sodium arsenite or cobalt chloride is mediated by activation of the AP-1 element located at -1,573 to -1,580 of the 5′ UTR.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1007025505842
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