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  • 1
    Publication Date: 2022-12-06
    Description: Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 48(17), (2021): e2021GL094128, https://doi.org/10.1029/2021GL094128.
    Description: Ocean warming is causing declines of coral reefs globally, raising critical questions about the potential for corals to adapt. In the central equatorial Pacific, reefs persisting through recurrent El Niño heatwaves hold important clues. Using an 18-year record of coral cover spanning three major bleaching events, we show that the impact of thermal stress on coral mortality within the Phoenix Islands Protected Area (PIPA) has lessened over time. Disproportionate survival of extreme thermal stress during the 2009–2010 and 2015–2016 heatwaves, relative to that in 2002–2003, suggests that selective mortality through successive heatwaves may help shape coral community responses to future warming. Identifying and facilitating the conditions under which coral survival and recovery can keep pace with rates of warming are essential first steps toward successful stewardship of coral reefs under 21st century climate change.
    Description: Support was provided by the US National Science Foundation (NSF) 1737311 to A. L. Cohen; The Atlantic Donor Advised Fund to A. L. Cohen; a Woods Hole Oceanographic Institution post-doctoral scholarship to M. D. Fox; the Robertson Foundation, The Prince Albert Foundation, the New England Aquarium, and the Akiko Shiraki Dynner Fund.
    Keywords: Coral reefs ; Thermal stress ; ENSO ; Adaptation ; Oceanography ; Central Pacific
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2022-11-04
    Description: Recalling IOC-Resolution XXX-3 and in accordance with 207 EX/Dec.5.II.A, this report provides a summary of a recently completed evaluation, namely: Internal Oversight Service (IOS) Evaluation of the Strategic positioning of the Intergovernmental Oceanographic Commission (IOC-UNESCO).
    Description: Item 9 of the provisional agenda of the Executive Board of UNESCO (212 EX/9). OPENASFA INPUT
    Description: Published
    Description: Non Refereed
    Keywords: International Oceanographic Commission of UNESCO ; Strategic position ; IOC-UNESCO ; Evaluation ; Scientific programmes ; Oceanography
    Repository Name: AquaDocs
    Type: Report
    Format: 9pp.
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  • 3
    Publication Date: 2022-11-02
    Description: Among the approximately 10,000 beneficial species of marine phytoplankton in the world’s oceans today, some 200 taxa can harm human society through the production of toxins that threaten seafood security and human health. These toxins are also responsible for wild or aquaculture fish-kills, may interfere with recreation-al use of coastal or inland waters, or cause economic losses. Non-toxic microalgae attaining high biomass can also cause Harmful Algal Blooms (HABs) by producing seawater discolorations, anoxia or mucilage that negatively affect the environment and human activities. The most frequently asked questions about harmful algal blooms are if they are increasing and expand-ing worldwide, and what are the mechanisms behind this perceived escalation. These questions have been addressed in several review papers concerning HAB trends at various scales, where evidences of expansion, intensification and increased impacts of harmful algal blooms have been gathered from a selection of examples that have gained high prominence in the scientific world and in society 1,2,3,4. Eutrophication, human-mediated introduction of alien harmful species, climatic variability, and aquaculture have all been mentioned as possible causes of HAB trends at various spatial and temporal scales 5,6. Over the last 40 years, the capacity and monitoring efforts to detect harmful species and harmful events have significantly increased, thus increasing the reporting of harmful events across the world’s seas. The resulting information is mostly scattered in the ever growing literature, with data from statutory monitoring programs often not published in peer review journals, while an extensive and detailed overview of the huge amount of information on harmful species, their spatial and temporal distribution and the trends of HABs they have caused has never been attempted so far. This lack of a synthesis of the relevant data has hampered a sound global assessment of the present status of phenomena related to harmful algae. Following the lead of the International Panel for Climate Change (IPCC) consensus reporting mechanism, and to complement the World Ocean Assessment, the need has been expressed for a Global HAB Status Report compiling an overview of Harmful Algal Bloom events and their societal impacts; providing a worldwide appraisal of the occurrence of toxin-producing microalgae; aimed towards the long term goal of assessing the status and probability of change in HAB frequencies, intensities, and range resulting from environmental changes at the local and global scale. This initiative was launched in April 2013 in Paris by the IOC Intergovernmental Panel on HABs (IOC/IPHAB), and has been pursued with the support of the Government of Flanders and hosted within the IOC International Oceanographic Date Exchange Programme (IODE) in partnership with ICES, PICES and IAEA. As a first step towards a global HAB status assessment, a Special Issue of the journal Harmful Algae (vol. 102, February 2021) has been published comprising 12 papers 7-18 each presenting an overview of toxic and non-toxic HABs in a specific area of the world’s seas. The regional overviews build on existing literature and exploit the information gathered in two relevant data-bases, both incorporated into the Ocean Biodiversity Information System (OBIS).
    Description: Government of Flanders
    Description: OPENASFA INPUT This Global HAB Status Report summary was prepared based on the special issue Global HAB Status reporting, vol. 102 (Feb. 2021) of the Harmful Algae (Elsevier Journal)
    Description: Published
    Description: Refereed
    Keywords: Harmful Algae Bloom ; Status Report ; HAB ; IODE ; International Oceanographic Data and Information Exchange ; Ocean Biodiversity Information System ; OBIS ; Harmful species ; PICES ; ICES ; IAEA
    Repository Name: AquaDocs
    Type: Report
    Format: 14pp.
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  • 4
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    UNESCO | Paris, France
    Publication Date: 2022-09-30
    Description: In 2017, the UN General Assembly declared the UN Decade of Ocean Science for Sustainable Development (2021-2030). It has entrusted IOC-UNESCO with the design and delivery of the Decade to ensure that ocean science is indeed underpinning sustainable ocean management and the 2030 Sustainable Development Agenda more broadly. Fulfilling its mandate as trustee of the Ocean Decade, as well as delivering on a growing list of additional roles, in an oceanographic space that is both expanding and increasingly crowded, establishes an important opportunity but also an overarching challenge for IOC-UNESCO. In the context of the upcoming UN Decade of the Ocean, the IOC-UNESCO agreed with the Internal Oversight Service (IOS) on the merit of conducting an evaluation of its strategic positioning within the UN system and the broader landscape of ocean-related actors and programmes, taking into account relevant enabling policy frameworks to which the work of the Commission responds.
    Description: OPENASFA INPUT Published by UNESCO's Internal Oversight Service.
    Description: Published
    Description: Not Known
    Keywords: Evaluation ; International Oceanographic Commission of UNESCO ; Oceanography ; Scientific programmes
    Repository Name: AquaDocs
    Type: Report
    Format: 2pp.
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  • 5
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    UNESCO | Paris, France
    Publication Date: 2022-09-30
    Description: Environmental DNA expeditions in UNESCO World Heritage Marine Sites: engaging citizen-scientists for biodiversity conservation of UNESCO sites.
    Description: Government of Flanders
    Description: OPENASFA INPUT
    Description: Published
    Keywords: Biodiversity ; Environmental DNA ; eDNA ; Marine environment ; Water analysis ; Oceanographic data ; OBIS ; Open Science ; Community participation ; Research projects ; World Heritage List
    Repository Name: AquaDocs
    Type: Other
    Format: 2pp.
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  • 6
    Publication Date: 2022-06-17
    Description: Sea wave monitoring is key in many applications in oceanography such as the validation of weather and wave models. Conventional in situ solutions are based on moored buoys whose measurements are often recognized as a standard. However, being exposed to a harsh environment, they are not reliable, need frequent maintenance, and the datasets feature many gaps. To overcome the previous limitations, we propose a system including a buoy, a micro-seismic measuring station, and a machine learning algorithm. The working principle is based on measuring the micro-seismic signals generated by the sea waves. Thus, the machine learning algorithm will be trained to reconstruct the missing buoy data from the micro-seismic data. As the micro-seismic station can be installed indoor, it assures high reliability while the machine learning algorithm provides accurate reconstruction of the missing buoy data. In this work, we present the methods to process the data, develop and train the machine learning algorithm, and assess the reconstruction accuracy. As a case of study, we used experimental data collected in 2014 from the Northern Tyrrhenian Sea demonstrating that the data reconstruction can be done both for significant wave height and wave period. The proposed approach was inspired from Data Science, whose methods were the foundation for the new solutions presented in this work. For example, estimating the period of the sea waves, often not discussed in previous works, was relatively simple with machine learning. In conclusion, the experimental results demonstrated that the new system can overcome the reliability issues of the buoy keeping the same accuracy.
    Description: Assist in Gravitation and Instrumentation srl Istituto Nazionale di Geofisica e Vulcanologia
    Description: Published
    Description: 798167
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: sea swell ; machine learning ; ocean waves ; micro-seismic data ; sea state ; sea wave period ; buoy ; Marine Science ; Oceanography
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 7
    Publication Date: 2004-12-25
    Description: The ablation of the protein kinase Raf-1 renders cells hypersensitive to apoptosis despite normal regulation of extracellular signal-regulated kinases, which suggests that apoptosis protection is mediated by a distinct pathway. We used proteomic analysis of Raf-1 signaling complexes to show that Raf-1 counteracts apoptosis by suppressing the activation of mammalian sterile 20-like kinase (MST2). Raf-1 prevents dimerization and phosphorylation of the activation loop of MST2 independently of its protein kinase activity. Depletion of MST2 from Raf-1-/- mouse or human cells abrogated sensitivity to apoptosis, whereas overexpression of MST2 induced apoptosis. Conversely, depletion of Raf-1 from Raf-1+/+ mouse or human cells led to MST2 activation and apoptosis. The concomitant depletion of both Raf-1 and MST2 prevented apoptosis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉O'Neill, Eric -- Rushworth, Linda -- Baccarini, Manuela -- Kolch, Walter -- New York, N.Y. -- Science. 2004 Dec 24;306(5705):2267-70.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Beatson Institute for Cancer Research, Garscube Estate, Switchback Road, Glasgow G61 1BD, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/15618521" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antigens, CD95/metabolism ; *Apoptosis ; COS Cells ; Cell Line, Tumor ; Dimerization ; Humans ; Mice ; Phosphorylation ; Protein-Serine-Threonine Kinases/genetics/*metabolism ; Proteomics ; Proto-Oncogene Proteins c-raf/genetics/*metabolism ; RNA, Small Interfering ; Signal Transduction ; Staurosporine/pharmacology ; Transfection
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2004-12-25
    Description: Binding of Sonic Hedgehog (Shh) to Patched (Ptc) relieves the latter's tonic inhibition of Smoothened (Smo), a receptor that spans the cell membrane seven times. This initiates signaling which, by unknown mechanisms, regulates vertebrate developmental processes. We find that two molecules interact with mammalian Smo in an activation-dependent manner: G protein-coupled receptor kinase 2 (GRK2) leads to phosphorylation of Smo, and beta-arrestin 2 fused to green fluorescent protein interacts with Smo. These two processes promote endocytosis of Smo in clathrin-coated pits. Ptc inhibits association of beta-arrestin 2 with Smo, and this inhibition is relieved in cells treated with Shh. A Smo agonist stimulated and a Smo antagonist (cyclopamine) inhibited both phosphorylation of Smo by GRK2 and interaction of beta-arrestin 2 with Smo. beta-Arrestin 2 and GRK2 are thus potential mediators of signaling by activated Smo.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chen, Wei -- Ren, Xiu-Rong -- Nelson, Christopher D -- Barak, Larry S -- Chen, James K -- Beachy, Philip A -- de Sauvage, Frederic -- Lefkowitz, Robert J -- New York, N.Y. -- Science. 2004 Dec 24;306(5705):2257-60.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medicine, Duke University Medical Center, Durham, NC 27710, USA. w.chen@duke.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/15618519" target="_blank"〉PubMed〈/a〉
    Keywords: Arrestins/*metabolism ; Cell Line ; Cell Membrane/*metabolism ; Clathrin/metabolism ; Coated Pits, Cell-Membrane/metabolism ; Cyclic AMP-Dependent Protein Kinases/*metabolism ; Cyclohexylamines/pharmacology ; Cytosol/metabolism ; Dynamins/metabolism ; Endocytosis ; Hedgehog Proteins ; Humans ; Membrane Proteins/metabolism ; Phosphorylation ; Receptors, Cell Surface ; Receptors, G-Protein-Coupled/*metabolism ; Recombinant Fusion Proteins/metabolism ; Signal Transduction ; Thiophenes/pharmacology ; Trans-Activators/metabolism ; Transfection ; Veratrum Alkaloids/pharmacology ; beta-Adrenergic Receptor Kinases
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2004-12-25
    Description: P-type ATPases extract energy by hydrolysis of adenosine triphosphate (ATP) in two steps, formation and breakdown of a covalent phosphoenzyme intermediate. This process drives active transport and countertransport of the cation pumps. We have determined the crystal structure of rabbit sarcoplasmic reticulum Ca2+ adenosine triphosphatase in complex with aluminum fluoride, which mimics the transition state of hydrolysis of the counterion-bound (protonated) phosphoenzyme. On the basis of structural analysis and biochemical data, we find this form to represent an occluded state of the proton counterions. Hydrolysis is catalyzed by the conserved Thr-Gly-Glu-Ser motif, and it exploits an associative nucleophilic reaction mechanism of the same type as phosphoryl transfer from ATP. On this basis, we propose a general mechanism of occluded transition states of Ca2+ transport and H+ countertransport coupled to phosphorylation and dephosphorylation, respectively.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Olesen, Claus -- Sorensen, Thomas Lykke-Moller -- Nielsen, Rikke Christina -- Moller, Jesper Vuust -- Nissen, Poul -- New York, N.Y. -- Science. 2004 Dec 24;306(5705):2251-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Centre for Structural Biology, Department of Molecular Biology, University of Aarhus, Gustav Wieds Vej 10C, DK-8000 Aarhus C, Denmark.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/15618517" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Diphosphate/chemistry/metabolism ; Adenosine Triphosphate/metabolism ; Aluminum Compounds/chemistry ; Amino Acid Motifs ; Animals ; Binding Sites ; Biological Transport, Active ; Calcium/metabolism ; Calcium-Transporting ATPases/*chemistry/*metabolism ; Chemistry, Physical ; Crystallization ; Crystallography, X-Ray ; Cytoplasm/metabolism ; Fluorides/chemistry ; Hydrolysis ; Ion Transport ; Models, Chemical ; Models, Molecular ; Phosphorylation ; Physicochemical Phenomena ; Protein Conformation ; Protein Structure, Tertiary ; *Protons ; Rabbits ; Sarcoplasmic Reticulum/enzymology ; Thapsigargin ; Thermodynamics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 10
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2004-12-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉York, John D -- Hunter, Tony -- New York, N.Y. -- Science. 2004 Dec 17;306(5704):2053-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmacology and Cancer Biology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, NC 27710, USA. yorkj@duke.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/15604398" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Membrane/metabolism ; Inositol/chemistry ; Inositol Phosphates/*metabolism ; Models, Biological ; Molecular Conformation ; Nuclear Proteins/*metabolism ; Phosphates/*metabolism ; Phosphatidylinositols/metabolism ; Phosphorylation ; Phosphotransferases (Phosphate Group Acceptor)/metabolism ; Proteins/*metabolism ; RNA-Binding Proteins/*metabolism ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/*metabolism ; Second Messenger Systems ; Serine/metabolism ; *Signal Transduction
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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