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  • 1
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Thalassiosira pseudonana CCMP1335 in nitrate-limited and nutrient-replete cultures
    Description: The marine diatom Thalassiosira pseudonana clone CCMP 1335 was grown in a continuous culture system on a 14:10 light-dark cycle under either nitrate-limited or nutrient-replete conditions, a photoperiod irradiance of either 50 or 300 micro-mol photons per square meter per second, partial pressures of either 400 or 1000 ppm CO2, and temperatures ranging from 5 to 32 degrees Celsius. Growth rates, photosynthetic rates, respiration rates, C:N ratios, C:Chlorophyll-a ratios, productivity indices, Fv/Fm ratios, and the initial slope and light-saturated asymptote of short-term photosynthesis-irradiance curves are reported. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/779368
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1536581
    Keywords: Climate change ; Phytoplankton ; Light ; Temperature ; CO2 partial pressure ; Acclimation
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 2
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Synechococcus elongatus CCMP1629 in nitrate-limited and nutrient-replete cultures
    Description: The marine cyanobacterium Synechococcus elongatus clone CCMP1629 was grown in a continuous culture system on a 14:10 light-dark cycle under either nitrate-limited or nutrient-replete conditions, a photoperiod irradiance of either 50 or 300 micro-mol photons per square meter per second, partial pressures of either 400 or 1000 ppm CO2, and temperatures ranging from 20 to 45 degrees Celsius. Growth rates, photosynthetic rates, respiration rates, C:N ratios, C:Chlorophyll-a ratios, productivity indices, Fv/Fm ratios, and the initial slope and light-saturated asymptote of short-term photosynthesis-irradiance curves are reported. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/811093
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1536581
    Keywords: Climate change ; Phytoplankton ; Light ; Temperature ; CO2 partial pressure ; Acclimation
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 3
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Wetz-783256-Sonde
    Description: Bottom and surface water quality sonde data of the Guadalupe Estuary site (Texas) between August 2017 and December 2017. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/787319
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1760006
    Keywords: Hurricane Harvey ; Freshwater Inflow ; Flooding ; Water quality ; Texas Coast ; Estuary ; Salinity ; Temperature ; Dissolved oxygen ; Sonde ; Continuous data
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Mumford Cove Monitoring Data
    Description: Despite their importance for research and environmental protection, there's still a shortage of high quality and high-resolution temperature, pH, and oxygen data particularly in shallow coastal habitats. We monitor five important environmental parameters (i.e., depth, temperature, salinity, pH, and dissolved oxygen) at 30 minute intervals in Mumford Cove, CT (41 degrees 19'25"N, 72 degrees 01'07"W), a small (2 km N-S × 0.5 km E-W), shallow (1-5m), cone-shaped embayment opening to northeastern Long Island Sound, with protected marsh habitat along its western side, marsh and beach habitat along its eastern side, and an extensive seagrass (Zostera marina) cover. Continuous monitoring is achieved by swapping identical and recalibrated probes (Eureka Manta Sub2) every 3-5 weeks. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/659874
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1536336
    Keywords: Salinity ; PH ; Temperature ; Depth ; Dissolved oxygen ; Long Island Sound ; Marsh ; Seagrass
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Wetz-783256-Discrete
    Description: Discrete hydrographic measurements of Lavaca-Colorado, Guadalupe and Nueces Estuaries on the Texas coast between August 2017 and January 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/787316
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1760006
    Keywords: Hurricane Harvey ; Freshwater Inflow ; Flooding ; Water quality ; Texas Coast ; Estuary ; Salinity ; Temperature ; Dissolved oxygen ; Chlorophyll ; Nutrients ; Nitrogen ; Carbon
    Repository Name: Woods Hole Open Access Server
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  • 6
    Publication Date: 2022-10-31
    Description: Dataset: Inside and Outside Kelp Forest Mooring
    Description: Data from moored instruments (pH, dissolved oxygen, temperature, salinity, PAR, pressure) at 9 depths outside (36° 37.342’ N, 121° 54.049’ W) and inside the kelp canopy (36° 37.297’ N, 121° 54.102’ W.) at Hopkins Marine Station, recorded between June and October 2018. The tidal depth of the kelp canopy mooring ranges from 8 to 11 meter. The outside mooring is located 115m north and offshore from the kelp forest, the tidal range is 16 to 9 meters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/822549
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; PH ; Oxygen ; Temperature ; Salinity ; PAR
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-10-31
    Description: Dataset: Discrete Seawater Samples
    Description: Discrete seawater samples collected at the surface, 1 m below the surface, and 1 m above the bottom two times a week at each mooring (Kelp and Outside) from June 12, 2018 to August 3, 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/826410
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; DIC ; Alkalinity ; PH ; Temperature ; Salinity
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scalpone, C. R., Jarvis, J. C., Vasslides, J. M., Testa, J. M., & Ganju, N. K. Simulated estuary-wide response of seagrass (Zostera marina) to future scenarios of temperature and sea level. Frontiers in Marine Science, 7, (2020): 539946, doi:10.3389/fmars.2020.539946.
    Description: Seagrass communities are a vital component of estuarine ecosystems, but are threatened by projected sea level rise (SLR) and temperature increases with climate change. To understand these potential effects, we developed a spatially explicit model that represents seagrass (Zostera marina) habitat and estuary-wide productivity for Barnegat Bay-Little Egg Harbor (BB-LEH) in New Jersey, United States. Our modeling approach included an offline coupling of a numerical seagrass biomass model with the spatially variable environmental conditions from a hydrodynamic model to calculate above and belowground biomass at each grid cell of the hydrodynamic model domain. Once calibrated to represent present day seagrass habitat and estuary-wide annual productivity, we applied combinations of increasing air temperature and sea level following regionally specific climate change projections, enabling analysis of the individual and combined impacts of these variables on seagrass biomass and spatial coverage. Under the SLR scenarios, the current model domain boundaries were maintained, as the land surrounding BB-LEH is unlikely to shift significantly in the future. SLR caused habitat extent to decrease dramatically, pushing seagrass beds toward the coastline with increasing depth, with a 100% loss of habitat by the maximum SLR scenario. The dramatic loss of seagrass habitat under SLR was in part due to the assumption that surrounding land would not be inundated, as the model did not allow for habitat expansion outside the current boundaries of the bay. Temperature increases slightly elevated the rate of summer die-off and decreased habitat area only under the highest temperature increase scenarios. In combined scenarios, the effects of SLR far outweighed the effects of temperature increase. Sensitivity analysis of the model revealed the greatest sensitivity to changes in parameters affecting light limitation and seagrass mortality, but no sensitivity to changes in nutrient limitation constants. The high vulnerability of seagrass in the bay to SLR exceeded that demonstrated for other systems, highlighting the importance of site- and region-specific assessments of estuaries under climate change.
    Description: This research was supported by the National Science Foundation Research Experience for Undergraduates Program (OCE-1659463), the Woods Hole Oceanographic Institution Summer Student Fellowship Program, the Barnegat Bay Partnership (through a US EPA Clean Water Act grant to Ocean County College; CE98212313), and the USGS Coastal and Marine Hazards/Resources Program. Although this project has been funded in part by the United States Environmental Protection Agency pursuant to a grant agreement with Ocean County College, it has not gone through the Agency’s publications review process and may not necessarily reflect the views of the Agency; therefore, no official endorsement should be assumed. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
    Keywords: Seagrass (Zostera) ; Climate change ; Spatial model ; Sea level rise ; Temperature ; North American Atlantic Coast ; Regional ; Eelgrass (Zostera marina)
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 9
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Inomura, K., Deutsch, C., Wilson, S. T., Masuda, T., Lawrenz, E., Lenka, B., Sobotka, R., Gauglitz, J. M., Saito, M. A., Prášil, O., & Follows, M. J. Quantifying oxygen management and temperature and light dependencies of nitrogen fixation by Crocosphaera watsonii. Msphere, 4(6), (2019): e00531-19, doi: 10.1128/msphere.00531-19.
    Description: Crocosphaera is a major dinitrogen (N2)-fixing microorganism, providing bioavailable nitrogen (N) to marine ecosystems. The N2-fixing enzyme nitrogenase is deactivated by oxygen (O2), which is abundant in marine environments. Using a cellular scale model of Crocosphaera sp. and laboratory data, we quantify the role of three O2 management strategies by Crocosphaera sp.: size adjustment, reduced O2 diffusivity, and respiratory protection. Our model predicts that Crocosphaera cells increase their size under high O2. Using transmission electron microscopy, we show that starch granules and thylakoid membranes are located near the cytoplasmic membranes, forming a barrier for O2. The model indicates a critical role for respiration in protecting the rate of N2 fixation. Moreover, the rise in respiration rates and the decline in ambient O2 with temperature strengthen this mechanism in warmer water, providing a physiological rationale for the observed niche of Crocosphaera at temperatures exceeding 20°C. Our new measurements of the sensitivity to light intensity show that the rate of N2 fixation reaches saturation at a lower light intensity (∼100 μmol m−2 s−1) than photosynthesis and that both are similarly inhibited by light intensities of 〉500 μmol m−2 s−1. This suggests an explanation for the maximum population of Crocosphaera occurring slightly below the ocean surface.
    Description: We thank Stephanie Dutkiewicz and Sallie W. Chisholm for useful discussion, Martin Lukeš for technical assistance for the N2 fixation measurement, and the members of Writing and Communication Center at MIT for their advice on writing. This research was supported by the Japan Student Service Organization (JASSO) (grant L11171020001 to K.I.), the Gordon and Betty Moore Foundation (grant GBMF 3775 to C.D. and grant GBMF 3778 to M.J.F.), the U.S. National Science Foundation (grant OCE-1756524 to S.T.W., grant OCE-1558702 to M.J.F., and grant OCE-PRF 1421196 to J.M.G), the Simons Foundation (Simons Postdoctoral Fellowship in Marine Microbial Ecology award 544338 to K.I., Simons Collaboration on Ocean Processes and Ecology award 329108 to M.J.F., Simons Collaboration on Computational BIOgeochemical Modeling of Marine EcosystemS [CBIOMES] award 549931 to M.J.F.), the Czech Science Foundation (GAČR) (grant 16-15467S to O.P.), and the National Sustainability Programme (NPU) (grant LO1416 Algatech plus to O.P.).
    Keywords: Crocosphaera ; Carbon ; Cell flux model ; Daily cycle ; Iron ; Light ; Nitrogen ; Nitrogen fixation ; Oxygen ; Photosynthesis ; Temperature
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(2), (2020): e2019JC015856, doi:10.1029/2019JC015856.
    Description: Summer temperature and velocity measurements from 14 years in 15 m of water over the inner shelf off Oregon were used to investigate interannual temperature variability and the capacity of the across‐shelf heat flux to buffer net surface warming. There was no observable trend in summer mean temperatures, and the standard deviation of interannual variability (0.5°C) was less than the standard deviation in daily temperatures each summer (1.6°C, on average). Yet net surface heat flux provided a nearly constant source of heat each year, with a standard deviation less than 15 urn:x-wiley:jgrc:media:jgrc23812:jgrc23812-math-0001 of the interannual mean. The summer mean across‐shelf upwelling circulation advected warmer water offshore near the surface, cooling the inner shelf and buffering the surface warming. In most years (11 out of 14), this two‐dimensional heat budget roughly closed with a residual less than 20 urn:x-wiley:jgrc:media:jgrc23812:jgrc23812-math-0002 of the leading term. Even in years when the heat budget did not balance, the observed temperature change was negligible, indicating that an additional source of cooling was needed to close the budget. A comparison of the residual to the interannual variability in fields such as along‐shelf wind stress, stratification, and along‐shelf currents found no significant correlation, and further investigation into the intraseasonal dynamics is recommended to explain the results. An improved understanding of the processes that contribute to warming or cooling of the coastal ocean has the potential to improve predictions of the impact of year‐to‐year changes in local winds and circulation, such as from marine heat waves or climate change, on coastal temperatures.
    Description: The authors would like to acknowledge the David and Lucile Packard Foundation and The Gordon and Betty Moore Foundation for their support of the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) mooring program. This paper is PISCO contribution 504. The contributions of A. Kirincich and S. Lentz were supported by National Science Foundation (NSF) Grant OCE‐1558874). E. Lemagie was partially supported by NSF Grant OCE‐1558874 as well as the Woods Hole Oceanographic Institution Postdoctoral Scholars program. Temperature and velocity data were collected and made available by PISCO (www.piscoweb.org). The NDBC and NWPO3 buoy data are freely available from NOAA (www.ndbc.noaa.gov). Surface heat flux reanalyses were download online: ERA5 was accessed through www.ecmwf.int/en/forecasts/datasets/reanalysis-datasets/era5, and NCEP and OAFlux data were downloaded from www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanalysis.html and http://oaflux.whoi.edu/, respectively.
    Description: 2020-07-24
    Keywords: Inner shelf ; Heat budget ; Temperature ; PISCO ; Oregon coast ; Upwelling
    Repository Name: Woods Hole Open Access Server
    Type: Article
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