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  • Articles  (7,338)
  • Articles: DFG German National Licenses  (7,338)
  • Analytical Chemistry and Spectroscopy  (6,468)
  • Organic Chemistry  (837)
  • Biochemistry and Biotechnology
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  • Recombinant DNA
  • Physics  (7,338)
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  • Articles  (7,338)
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  • 1
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1088 (1991), S. 31-35 
    ISSN: 0167-4781
    Keywords: DNA-binding protein) ; Fusion gene ; Gene regulation ; Immunoblot assay ; Recombinant DNA ; Transcription
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 2
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1132 (1992), S. 233-239 
    ISSN: 0167-4781
    Keywords: Cephalosporin acylase ; Gene' structure ; Recombinant DNA ; γ-Glutamyltranspeptidase
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 3
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Lipids and Lipid Metabolism 1212 (1994), S. 152-166 
    ISSN: 0005-2760
    Keywords: Apolipoprotein B ; Cell culture ; Hepatocyte ; Lipoprotein ; Recombinant DNA ; Transfection
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 4
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1009 (1989), S. 290-292 
    ISSN: 0167-4781
    Keywords: (E. coli) ; Nucleotide sequence ; Recombinant DNA ; Restriction endonuclease ; Restriction-modification system
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 5
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1130 (1992), S. 120-122 
    ISSN: 0167-4781
    Keywords: (Brucella abortus) ; Heat shock protein ; Recombinant DNA ; groEL ; groES
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 6
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1129 (1992), S. 239-242 
    ISSN: 0167-4781
    Keywords: (Cyprinus carpio) ; Glycoprotein hormone ; Intron-exon boundary ; Molecular evolution ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 7
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1007 (1989), S. 67-72 
    ISSN: 0167-4781
    Keywords: (S. pneumoniae) ; Gene expression ; Pneumolysin ; Protein purification ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 8
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1007 (1989), S. 84-90 
    ISSN: 0167-4781
    Keywords: (B. subtilis) ; (E. coli) ; (V. harveyi gene) ; DNA ; Gene expression ; Luciferase gene ; Luminescence ; Recombinant DNA ; Shuttle plasmid
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 9
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 909 (1987), S. 156-159 
    ISSN: 0167-4781
    Keywords: (Sea urchin) ; Nucleotide sequencing ; Recombinant DNA ; S1 nuclease mapping ; rRNA terminus
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 10
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1174 (1993), S. 285-288 
    ISSN: 0167-4781
    Keywords: (Fish) ; (Silver carp) ; Growth hormone gene ; PCR ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 11
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1089 (1991), S. 331-338 
    ISSN: 0167-4781
    Keywords: Cloning ; Interface catalysis ; Protein folding ; Recombinant DNA ; Site-directed mutagenesis
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 12
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1130 (1992), S. 78-80 
    ISSN: 0167-4781
    Keywords: (Mouse) ; Cartilage ; Collagen ; Gene expression ; Recombinant DNA ; mRNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 13
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1131 (1992), S. 161-165 
    ISSN: 0167-4781
    Keywords: (L. cruciata) ; (P. pyralis) ; Firefly luciferase ; Primary structure ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 14
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1087 (1990), S. 190-198 
    ISSN: 0167-4781
    Keywords: (Chinese hamster ovary cell line) ; (Rat) ; Gene expression ; Pulmonary surfactant ; Recombinant DNA ; Recombinant protein ; Surfactant associated protein
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 15
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1007 (1989), S. 334-342 
    ISSN: 0167-4781
    Keywords: (E. coli host) ; (Human gene) ; Aldolase ; Aldolase gene ; Class I ; Expression plasmid ; Glycolytic pathway ; Isozyme gene ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 16
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Gene Structure and Expression 1009 (1989), S. 156-160 
    ISSN: 0167-4781
    Keywords: (E. coli vector) ; (Human gene) ; Gene dosage effect ; Growth hormone cDNA ; Recombinant DNA ; cDNA expression
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 17
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Molecular Basis of Disease 1182 (1993), S. 119-127 
    ISSN: 0925-4439
    Keywords: Eye disorder ; Genetic map ; Recombinant DNA ; Restriction fragment length polymorphism ; X-linked
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 18
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    FEBS Letters 281 (1991), S. 1-8 
    ISSN: 0014-5793
    Keywords: Gene expression ; Gene transfer ; Plant biotechnology ; Plant viral vectors ; Plant viruses ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 19
    ISSN: 0014-5793
    Keywords: Plant virus ; Recombinant DNA ; Translational enhancement
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 20
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    FEBS Letters 303 (1992), S. 4-10 
    ISSN: 0014-5793
    Keywords: De novo purine nucleotide synthesis ; Gout ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 21
    ISSN: 0014-5793
    Keywords: Colony screening ; Oligonucleotide-directed mutagenesis ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 22
    ISSN: 0014-5793
    Keywords: CA77 cell ; Polylinker ; Recombinant DNA ; Simian virus 40 ; Transfection ; Ubiquitin promoter
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 23
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    FEBS Letters 342 (1994), S. 119-123 
    ISSN: 0014-5793
    Keywords: Adenosine cyclic monophosphate ; Calcium channel ; Clone cell ; Phosphoprotein phosphatase ; Protein kinase ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 24
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    FEBS Letters 166 (1984), S. 67-70 
    ISSN: 0014-5793
    Keywords: Bacterial expression of human cDNA ; Cloning of human cDNA ; Human α"1-antitrypsin ; Immunoassay for α"1-antitrypsin ; Plasma protein ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 25
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    FEBS Letters 276 (1990), S. 138-142 
    ISSN: 0014-5793
    Keywords: Copy number ; Genomic blot ; Multigene family ; Recombinant DNA ; tRNA^G^l^u gene ; λ Charon4A
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 26
    ISSN: 0014-5793
    Keywords: Cell-free translation ; Isoelectric focusing ; Multigene family ; Rat liver ; Recombinant DNA ; Urinary protein
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 27
    ISSN: 0014-5793
    Keywords: DNA sequence ; Direct repeat ; Exon/intron ; Mouse corticotropin-β-lipotropin precursor gene ; Pseudogene ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 28
    ISSN: 0014-5793
    Keywords: DNA sequence ; Eye lens ; Ophthalmology ; Protein structure ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 29
    ISSN: 0014-5793
    Keywords: Hemagglutinin-neuraminidase protein ; Nucleotide sequence ; Oligodeoxynucleotide ; Recombinant DNA ; Sendai virus ; cDNA library
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 30
    ISSN: 0014-5793
    Keywords: Eucaryotic expression ; Fusion protein ; Procaryotic expression ; Recombinant DNA ; Sendai virus
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
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  • 31
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Molecular Cell Research 1176 (1993), S. 269-275 
    ISSN: 0167-4889
    Keywords: Autographa californica nuclear polyhedrosis virus ; Bioluminescence ; Recombinant DNA ; Spodoptera frugiperda ; α"2-Adrenergic receptor
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 32
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochimica et Biophysica Acta (BBA)/Molecular Cell Research 1220 (1994), S. 223-225 
    ISSN: 0167-4889
    Keywords: (C. carpio) ; (Carp) ; MAP kinase kinase ; Polymerase chain reaction ; Recombinant DNA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine , Physics
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  • 33
    ISSN: 1432-0827
    Keywords: Amelogenin ; Expression ; Enamel ; Recombinant DNA ; Tooth
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract A mouse cDNA encoding a 180 amino acid amelogenin was subcloned into the pET expression plasmid (Novagen, Madison, WI) for production in Escherichia coli. A simple growth and purification protocol yields 20–50 mg of 95–99% pure recombinant amelogenin from a 4.5-liter culture. This is the first heterologous expression of an enamel protein. The expressed protein was characterized by partial Edman sequencing, amino acid composition analysis, SDS-PAGE, Western blotting, laser desorption mass spectrometry, and hydroxyapatite binding. The recombinant amelogenin is 179 amino acids in length, has a molecular weight of 20,162 daltons, and hydroxyapatite binding properties similar to the porcine 173 residue amelogenin. Solubility analyses showed that the bacterially expressed protein is only sparingly soluble in the pH range of 6.4–8.0 or in solutions 20% saturated with ammonium sulfate. The purified protein was used to generate rabbit polyclonal anti-amelogenin antibodies which show specific reaction to amelogenins in both Western blot analyses of enamel extracts and in immunostaining of developing mouse molars.
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  • 34
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 1 (1988) 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
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  • 35
    Electronic Resource
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 1 (1988), S. 123-131 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Photolysis of N-alkyl-N-(3-aryl-3-butenyl) ureas (1) in acetonitrile gave cyclization products, 3-aryl-3-methyl-pyrrolidines, in good yields, whereas irradiation of 1 in methanol afforded methanol adducts as well as the cyclization products. Both the reactions are singlet reactions, and the cyclization is presumed to proceed via 1,6-hydrogen transfer from exciplexes with charge transfer character.
    Additional Material: 2 Tab.
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  • 36
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 1 (1988), S. 143-151 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The dependence of the catalytic efficiencies of sodium carboxymethylamylose (NaCMA) for the hydrolysis of N-lauryl-3-acetoxypyridinium iodide (1) and p-nitrophenyl dodecanoate (3) on its degree of substitution (D. S. = 0·00, 0·12, 0·18, 0·24, 0·29 and 0·35) and on the pH values of the solutions (pH = 7·32, 7·80, 8·10 and 9·30) have been studied. At fixed D. S. values, the observed hydrolysis rates of 1 and 3 increase with increasing concentrations of NaCMA and follow saturation kinetics. At fixed concentration of NaCMA, the rates increase with decreasing D. S. values until they reach maxima at D. S. = 0·00. Furthermore, at any D. S. value the catalytic efficiency increases with increasing pH values of the solutions. All these results indicate that the hydroxyl groups are actually the principal catalyzing groups.
    Additional Material: 5 Ill.
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  • 37
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 1 (1988) 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
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  • 38
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 1 (1988), S. 191-195 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The photochemical reaction of MAQO with various aromatic amines were studied by ESR. The results show that nitroxide radicals are stable productrs of the photooxidation of both diphenylamines and phenylamines. The photolyzed phenothiazine does not yield nitroxide as the final product, instead it gives the neutral radical as the stable final product.
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  • 39
    Electronic Resource
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 1 (1988), S. 209-223 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The equilibrium acidities of phenylacetonitrile, and 20 of its m- and p-substituted derivatives have been measured in Me2SO solution. Their pKa′s plot linearly with those of the corresponding anilines. Combination of the pKa′s of these acids with their oxidation potentials, Eox(HA), and those of their conjugate bases, Eox(A-), provide an estimate of the acidities of the corresponding radical cations. The pKHA+ values for ArCH2CN+., where Ar is Ph, 1- and 2-naphthyl, and 9-anthryl, are -32, -18·5, -17·5, and -11, respectively, compared to 21·9, 20·85, 20·65, and 19·8 for the corresponding ArCH2CN acids. Acidities of PhCH(Me)CN+., Ph2CHCN+., 9-CN-FlH+., and 9-CN-XnH+. are -33, -35, -25, and -27, respectively, compared to 23·0, 17·5, 8·3, and 13·6 for the corresponding acids from which they were derived. The homolytic bond dissociation energies (BDEs) for the benzylic C—H bonds in these arylacetonitriles, estimated by combining pKHA with Eox(A-), fall in the range of 69 kcal/mol for 9-CN-XnH to 82 kcal/mol for PhCH2CN. For GC6H4CH2CN+. radical cations the acidities are decreased, relative to G=H, when G is an electron donor substituent and increased when G is an acceptor. The BDEs of the benzylic C—H bonds in GC6H4CH2CN are weakened by up to 4 kcal/mol by para donors and strengthened by up to 1·2 kcal/mol by m- or p-acceptors. The significance of these changes in BDEs with regard to the use of σ. scales and the ΔAOP method for estimating substituent effects on radical stabilities is discussed.
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  • 40
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 1 (1988), S. 281-285 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The thermal and photochemical decompositions of 5 have been studied. Both reactions lead to CBr2 transfer in good to high yields. With the 2-pentenes as substrates, CBr2 transfer is stereospecific in the classical singlet carbene manner.
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  • 41
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 1 (1988), S. 305-308 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Decomposition of the tosylhydrazone salts formed from cubyl carboxaldehyde and homocubanone, potential precursors of cubylcarbene (5) and homocubanylidene (6), leads in each case to products derived from 6. It is suggested that homocub-1(9)-ene (7) is the active ingredient in the formation of 6 from both precursors. The hydrazones formed from N-aziridylamines are useful photochemical sources of 6, and presumably other carbenes. Flash vacuum pyrolysis of the tosyl hydrazone salts and hydrazones at 600°C leads to indene.
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  • 42
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 1 (1988), S. 317-332 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Light- and heat-induced decompositions and reactions with nucleophiles of 6,6,8,8-tetramethyl-2-selena-3,4-diaza-7-oxabicyclo[3.3.0]octa- 1(5),3-diene have been studied. In contrast with the conversion to the cyclopentyne derivative (9), selenium containing intermediates (6a, 6b, and 7) were efficiently trapped using several reagents to give various kinds of organoselenium compounds. Of particular note is the isolation of a stable selenirane derivative (16) obtained by the cycloaddition of the photochemically generated selenirene intermediate (7) with furan. The character and reactivity of the intermediates are also discussed.
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  • 43
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    Journal of Physical Organic Chemistry 1 (1988), S. 359-362 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Reaction rates for solvolysis of a mustard analogue are accurately correlated by the solvatochromic equation without inclusion of a nucleophilicity term, and thus the equation is shown to reveal mechanistically significant information.
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  • 44
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    Journal of Physical Organic Chemistry 2 (1989), S. 26-34 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A set of 4-monosubstituted cyclopentenes, , were synthesized and their relative rates (kX/kH) for bromination and chlorination were determined in methanol, ethanol and acetic acid at 25 °C by competitive method. log(kX/kH) for most of the substituents can be correlated by means of Taft's equation, log(kX/kH) = ρI σI + C. In methanol ρI, Br2 = -2·91, ρI, Cl2 = -0·49, in ethanol ρI, Br2 = -3·07, ρI, Cl2 = -0·70 and in acetic acid ρI, Br2 = -1·64, ρI, Cl2 = -0·65. The presence of C(〈0) is due to a constant steric effect. The deviation of X = H is ascribed to the absence of the steric effect and that of X = CO2Me and CO2Et is accounted for in terms of anchimeric assistance. For chlorination no anchimeric assistance was observed.
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  • 45
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    Journal of Physical Organic Chemistry 2 (1989), S. 43-50 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The cyclic vinyl ether dihydro-1,4-dioxin is converted to its cyclic hemiacetal hydration product, 2-hydroxy-1,4-dioxane, in aqueous solution by an acid-catalyzed reaction for which kH+ = 1·80 × 10-5 M-1 S-1 at 25°C. This reactivity and the solvent isotope effect kH+/kD+ = 2·2 show that the reaction occurs by rate-determining proton transfer from catalyst to substrate and not by a pre-equilibrium mechanism as recently proposed.2
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  • 46
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    Journal of Physical Organic Chemistry 2 (1989), S. 57-88 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The cation radical vinylcyclobutane (VCB) rearrangement is found to be a reaction of substantial scope, synthetic utility, and exceptional kinetic facility. In conjuction with cation radical cyclobutanation, it constitutes an effective method for net (indirect) Diels-Alder addition to electron rich dienophiles. Reactions can be carried out with either aminium salt or photosensitized electron transfer (PET) initiation and are powerfully facilitated by ionizable substituents such as p-anisyl, phenylthio, and phenoxy at the 2-position of the vinylcyclobutane. The intramolecularity of the reaction is clearly established and in four discrete systems preferred sr (suprafacial/retention) stereochemistry is observed. A theoretical basis for sr stereochemistry in the cation radical VCB rearrangement is advanced. The transition state for the reaction is considered to be similar to that for the direct cation radical Diels-Alder cycloaddition, another cation radical pericyclic reaction which converges on the same product. This model of the VCB rearrangement transition state is used to rationalize the strong rate-retarding effect of a Z-methyl substituent attached to the vinyl group and of a methyl substituent at the 4-position of the vinylcyclobutane ring cis to the vinyl substituent.
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  • 47
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    Journal of Physical Organic Chemistry 2 (1989), S. 110-116 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The transamination reaction of α-amino acids with glyoxylic acid as catalyzed by copper(II) ions was investigated kinetically in an aqueous medium at pH 5·0 and 30·0°C. L-Phenylalanine transferred its amino group to glyoxylic acid most readily among seven different amino acids used here in the single-walled bilayer vesicle formed with N,N-dihexadecyl-Nα-[6-(trimethylammonio)hexanoyl]-L-histidinamide bromide (N+C5His2C16). Such rate enhancement was found to originate from the cooperative trifunctional catalysis: a coordination effect exercised by copper(II) ions, a general acid-base catalysis by the imidazolyl group of the lipid, and a hydrophobic field effect provided by the bilayer vesicle. Lack of any of the three functions failed to give out significant rate enhancement. As regards correlation between the reactivity and the nature of α-amino acids, the copper(II)-catalyzed transamination was progressively enhanced as hydrophobicity of the α-amino acid was increased in the N+C5His2C16 vesicle.
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  • 48
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    Journal of Physical Organic Chemistry 2 (1989) 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 49
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    Journal of Physical Organic Chemistry 1 (1988), S. 119-121 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Reduction of aromatic aldehydes by benzeneselenol is found to be promoted by molecular oxygen to give corresponding alcohols in good yields. No reduction took place without oxygen.A free radical process involving SH2 reaction at the selenium atom is proposed where the phenylseleno radical attacks the selenium atom of selenohemiacetal, the adduct of benzeneselenol to aldehyde, to give the ketyl radical which then abstracts hydrogen from benzeneselenol. The intermediacy of selenohemiacetal is supported by a quantitative reduction of α-methoxybenzyl phenyl selenide, which is used as a model compound of the intermediate.
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  • 50
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    Keywords: Organic Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: The dependency of the wrapping-up capability of sodium carboxymethylamylose (NaCMA) on its degree of substitution (D. S. = 0·00, 0·12, 0·18, 0·24, 0·29, 0·35 and 0·41) have been studied, using two guest species, iodine and cetyl-trimethylammonium bromide (CTAB). The λmax values of NaCMA-iodine helical inclusion complexes decrease with increasing D. S. values and the amounts of encapsulated iodine by NaCMA as measured by amperometric titrations also decrease with increasing D. S. values. With CTAB as the substrate, the largest number of binding sites, n, and the dissociation constants Kd have been determined by the method of surface tension versus the CTAB concentration plots. The results show that n decreases while Kd increases with increasing D. S. values. All these observations point to the fact that the wrapping-up capability of NaCMA decreases with increasing degrees of substitution. The results are discussed in terms of host-guest and host-solvent hydrophobic-lipophilic interactions as well as intramolecular hydrogen-bonding.
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  • 51
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    Journal of Physical Organic Chemistry 1 (1988), S. 161-167 
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    Keywords: Organic Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: The temperature-dependence of the kinetic isotope effects for branched reactions proceeding via a common intermediate has been simulated by calculations. It is shown that, under certain conditions, anomalously small isotope effects on the Arrhenius preexponential factors, as well as unusually large observed isotope effects, may originate from the branching.
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  • 52
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    Journal of Physical Organic Chemistry 1 (1988), S. 153-160 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The structures of the allyl anion (1) and two fluoro-substituted derivatives, perfluoro (2) and 1,1-difluoro (3) have been calculated by ab inito molecular orbital theory. Geometries were gradient optimized, and force fields and an MP-2 correlation correction were determined at stationary points. The calculations were done with a double zeta basis set augmented by d functions on carbon (DZ + Dc). Final self-consistent field (SCF) and MP-2 energy calculations were done with the DZ + Dc basis set augmented by diffuse functions. The ground state of 1 is the planar allyl anion (C2v). The rotation barrier in 1 is 21·1 kcal/mol at the MP-2 level. The cyclopropyl carbanion is 27·0 kcal/mol higher in energy at the MP-2 level. The perfluoroallyl anion is not planar, and the rotated structure is 25·7 kcal/mol more stable than the C2v structure at the MP-2 level. The lowest energy structure on the potential energy surface for 2 is the perfluorocyclopropyl carbanion which is 27·8 kcal/mol more stable than the C2v structure at the MP-2 level. The 1,1-difluoroallyl anion is also not planar. Here the most stable structure on the potential energy surface is the rotated allyl anion which is 8·3 kcal/mol more stable than the all-planar allyl anion structure.
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  • 53
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    Keywords: Organic Chemistry ; Physical Chemistry
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    Notes: 2,2′-Diselenocyanato-1,1′-binaphthyl(1), the first selenium-containing binaphthyl derivative, has been synthesized in optically active form the corresponding diamine by diazotization followed by the reaction with potassium selenocyanate. Its molecular structure is determined by X-ray diffraction method. It is revealed that selenium atoms have hypervalent penta-coordination in the crystal.
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  • 54
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    Journal of Physical Organic Chemistry 1 (1988), S. 185-190 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: From the 1H-NMR spectra of the various pyrrole compounds, 1-substituted 2,5-dimethylpyrroles having two substituent groups on the carbon adjacent to the nitrogen atom were found to be very much hindered compounds. 1-[(1-Substituted)-2-phenylethyl]-2,5-dimethylpyrroles showed the restricted rotation, and the phenyl group of the most stable conformer was in close proximity to the pyrrole group due to dipole interaction. These NMR observations were supported by force field conformational analysis.
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  • 55
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    Journal of Physical Organic Chemistry 1 (1988), S. 333-349 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: New series of platinum complexes of cyclopropenylidenes of the types of PtX2(CP)2 and trans-PtX(PBu3)2(CP) have been synthesized, where CP is di-t-butylcyclopropenylidene (BCP) or bis(diisopropylamino)cyclopropenylidene (ACP). The 13C-NMR chemical shifts, and 13C-195Pt coupling constants (1JPtC) for the complexes are discussed in comparison with those values derived from closely related series of compounds, trans-PtCl(PR3)2L; L — —CH3, —C6H5 and —C≡CBu-t. An excellent linear relationship through the origin was obtained between 1JPtC and the formal ‘s’ % character of the carbon directly bonded to Pt for the series trans-PtCl(PR3)2L in which the Pt—C bond is regarded as a pure σ-linkage, whereas 1JPtC deviates largely from this relationship when pπ—dπ bonding interaction possibly exists in the Pt—C bond. The NMR data suggest the strong nmr trans-influence of the cyclopropenylidenes and that in the Pt—CP bond the σ-interaction is appreciable but the π-interaction is negligible.
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  • 56
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    Journal of Physical Organic Chemistry 2 (1989), S. 1-14 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The mechanism of aromatic nucleophilic substitutions by amines in protic solvents is well established; on the contrary the mechanism/s of the reactions in aprotic solvents is/are still subject of controversy. The present paper describes several systems for which fourth-order kinetics (third-order in amine) were observed. A mechanism is proposed to account for this as well as other observation such as: overall negative energies of activation, quadratic dependence of kA with non-nucleophilic tertiary bases, spectacular effects of hydrogen-bond donor (HBD) and hydrogen-bond acceptor (HBA) catalysts, etc. Other alternative mechanisms are also discussed.
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  • 57
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    Notes: The kinetics and mechanisms of the reactions between 1-phenylethyl benzenesulfonates (1-PEB) with N,N-dimethylanilines are investigated in methanol at 35·0°C. Reactivity and selectivity trends were found to be similar to those for the reactions of 1-PEB with anilines, but the magnitudes of cross interaction constants, ρXZ, between substituents X in the nucleophile and Z in the leaving group were substantially smaller indicating no hydrogen-bond bypass bridge formation in the transition state. However, the magnitude of ρXZ suggested a direct electrostatic interaction between the reaction centers in the nucleophile and leaving group in the frontside nucleophilic attack with a loose transition state structure.
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  • 58
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    Journal of Physical Organic Chemistry 2 (1989), S. 89-92 
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    Keywords: Organic Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: Spectral characteristics of several simple substituted B,B-bis(mesityl)pyrroloboranes are reported which support a theoretical treatment by Bonacic-Koutecky and Michl (J. Am. Chem. Soc. 107, 1765 (1985)) describing the excited states of simple aminoboranes as an example of twisted internal charge transfer. In the aminoboranes the pyrrolo moiety functions as the electron donor group and the empty p-orbital of the boron atom as the acceptor.
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  • 59
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    Journal of Physical Organic Chemistry 2 (1989) 
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  • 60
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    Journal of Physical Organic Chemistry 2 (1989), S. 183-186 
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    Keywords: Organic Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: The harmonic vibrational frequencies were calculated analytically at the 6-31** level for azetidine using the GAUSSIAN 82 program. The results strongly indicate the presence of several errors in a recent assignment of the fundamentals of azetidine based on a normal coordinate analysis and a revised assignment is suggested. It is concluded that reliable vibrational data for azetidine in the gas phase are needed in order to resolve the remaining ambiguities in the interpretation of the spectra.
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  • 61
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    Journal of Physical Organic Chemistry 2 (1989), S. 205-213 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Mechanism of the Grignard reactions of aromatic ketones in THF was studied by spectroscopic and kinetic methods. The stable radical intermediates generated in the initial electron transfer from Grignard reagent to ketones are in a state of aggregated dimer of corresponding ion-radical pairs; in which two ketone anion radicals are bridged by a dimer di-cation of Grignard reagent. Subsequent alkyl radical transfer from dimeric Grignard reagent cation moiety to ketone anion radical aggregated each other are promoted by a participation of another neutral Grignard reagent. Proposed mechanism by present authors is able to explain well addition products/reduction products ratios in the Grignard reactions.
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  • 62
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    Journal of Physical Organic Chemistry 2 (1989), S. 232-242 
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    Keywords: Organic Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: Characteristic vector analysis of a set of six physical and empirical parameters of 103 commonly used organic solvents (bp, ∊r, μ, nD, ETN, and δ) gives four vectors describing 95% of the total data variability. Non-hierarchical cluster analysis, applied to our results, leads to ten separate classes of organic solvents.
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  • 63
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    Journal of Physical Organic Chemistry 1 (1988), S. 103-114 
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    Keywords: Organic Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: The effect of solvent additives on the course of TiO2 photocatalyzed oxygenation of α-methylstyrene has been studied. While the addition of small amounts of nonhalogenated alcohols to TiO2 powders suspended in acetonitrile was found to decrease the rate of photooxygenation, added halogenated alcohols increase the rate of reaction. In addition, the solvent additives affect the observed product distribution.
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    Journal of Physical Organic Chemistry 1 (1988), S. 115-117 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A novel oxygen induced reduction of α,β-unsaturated carbonyl compounds is discovered. The reduction of the carbon-carbon double bond of α,β-unsaturated carbonyl compounds by benzeneselenol was caused by an introduction of molecular oxygen into the reaction system. This reduction is likely to proceed via a radical chain pathway involving an SH2 type reaction between a phenylseleno radical and a 1,2-adduct of benzeneselenol to the carbonyl group of the α,β-unsaturated carbonyl compound to give an allylic radical which absracts a hydrogen atom from benzeneselenol to form the reduction product.
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  • 65
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    Journal of Physical Organic Chemistry 1 (1988), S. 169-178 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The development of positive charge β to silicon in a saturated five-membered ring has been studied in the cis- and trans-2-(trimethylsilyl)cyclopentyl trifluoroacetates. The cis substrate solvolyzes in 97% trifluoroethanol at 25° C about 5 times faster than the analogous six-membered ring, after correction for differences in ring strain. The trans substrate solvolyzes about 360 times more slowly than the analogous six-membered ring. These changes are in agreement with a hyperconjugative mechanism for interaction between the silyl group and the developing positive charge. The expected cosine-squared dependence of hyperconjugation on the Si—C—C—X dihedral angle suggests that the cis dihedral angle is reduced somewhat from the 60° in the six-membered ring, and the trans dihedral angle is reduced substantially from the 180° in the six-membered ring.
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  • 66
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    Journal of Physical Organic Chemistry 1 (1988) 
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  • 67
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    Journal of Physical Organic Chemistry 1 (1988), S. 247-257 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The rate of hydrolysis of the aromatic vinyl ether o-carboxy-α-methoxy-β,β-dimethylstyrene was found to be accelerated 25-fold by ionization of its carboxylic acid group, but the effective molarity which may be calculated if all of this rate acceleration is ascribed to intramolecular general acid catalysis is only EM = 1 · 1 m. This is similar to the small effective molarities found before for intramolecular catalysis by carboxylic acid groups of aliphatic vinyl ethers, which shows that, unlike the situation in other intramolecular reactions, e.g. ketone enolization, the extra rigidity of aromatic over aliphatic systems does not improve the efficiency of intramolecular catalysis in vinyl ether hydrolysis.It is suggested that this behaviour is the result of reduced conjugation between the vinyl ether group and the aromatic ring in the transition state of the vinyl ether hydrolysis reaction, which retards the rate and offsets any improvement effected by increased rigidity of the aromatic system.
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    Journal of Physical Organic Chemistry 1 (1988), S. 287-298 
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    Keywords: Organic Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: Ab initio STO-3G and 6-31G minimized geometries of 5-oxo- (9), 6-oxo-7-oxabicyclo[2.2.1]hept-2-yl cation (12) and 7-oxabicyclo[2.2.1]hept-2-yl cation (15) were obtained. The energy barriers for their Wagner-Meerwein rearrangements to the more stable 5-oxo- (11), 6-oxo-3-oxabicyclo[2.2.1]hept-2-yl (13) and 3-oxabicyclo[2.2.1]hept-2-yl (17) cations, respectively, have been evaluated and compared with those calculated for the rearrangement of the 5-oxo (18) and 6-oxobicyclo[2.2.1]hept-2-yl cations (20). In agreement with experimental data, the ‘true migratory aptitude’ of an acyl group is higher than that of β-oxoalkyl group in competitive Wagner-Meerwein rearrangments that are ‘energetically unbiased’. The ease of the acyl group 1,2-shift toward an electron-deficient center is related to the electron-donating ability of the carbonyl group due to favorable n(CO) ↔ σ σ ↔ p(C+) hyperconjugative interaction.
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    Journal of Physical Organic Chemistry 1 (1988), S. 299-303 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Iodide ion promotes the free radical reaction of isopropylmercury idide with bromotrichloromethane to yield isopropyl bromide with rate enhancement in the order of 104. The reaction involves electron transfer from i-PrHgI2- to the trichloromethyl radical in a long kinetic chain process. Iodide ion also promotes the free radical chain conjugate addition of tert-butylmercury chloride to α,β-unsaturated ketones, esters, phosphonate esters and sulfones. Competitive reactivity studies indicate that lithium di-tert-butylcuprates or tri-tert-butylzincates react with 2-cycloalkenones by a mechanism involving attack by tert-butyl radicals. No evidence for radical attack is observed for the corresponding n-butyl ate complexes of copper or zinc.
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    Journal of Physical Organic Chemistry 1 (1988), S. 197-207 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ESR spectra of l-cyano-2-(trimethylsilyl)ethyl and related radicals were recorded. Temperature dependent ESR spectra of these radicals revealed that electron-releasing trimethylsilylmethyl and electron-withdrawing cyano groups synergetically functioned to stabilize the radical centers due to σ-π captodative effects.
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  • 71
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    Notes: The excellent linearity (R2 = 0·997) of a plot of pKa values for 17 m- and p-substituted benzyl phenyl sulfones, GC6H4CH2SO2Ph, vs. those for the corresponding arylacetonitrile, GC6H4CH2CN, demonstrates that substituent solvation and substituent solvation assisted resonance (SSAR) effects for p-CN, p-COPh, and p-SPh are nearly identical in these two substrates. The PhSO2 group in PhCH2SO2Ph increases the BDE of the α-C—H bond by 2 kcal/mol, relative to toluene. The α-C—H bonds in GC6H4CH2SO2Ph sulfones are stabilized by 1-2 kcal/mol by acceptor G′s (m-CN, p-CN, m-CF3, p-CF3), but weakened by 1 and 5 kcal/mol, respectively, by donors (p-OMe and p-NMe2). The GC6H4CH2SO2Ph+. radical cation with G = H has a pKHA+. = -25. Its acidity is increased when G is an acceptor by as much as 9 to 10 kcal/mol (G = 3-CN, 3-CF3, 4-CF3, 4-NO2), but is decreased when G is a donor by as much as 33 kcal/mol (G = NMe2). When G = 4-SPh the radical cation is stabilized, relative to G = H, by a larger amount (25 kcal/mol) than when G = 4-OMe (18 kcal/mol). Structural changes along the series PhCH2SO2Ph, 2-naphthyl-CH2SO2Ph, 9-anthryl CH2SO2Ph cause negligible changes in the acidities of these acids, but sizable decreases in the acidities of the corresponding radical cations. Introduction of a phenylsulfonyl group into the methyl group of 9-methylanthracene or the 9-position of fluorene or xanthene increase the BDEs by 3, 2, and 7 kcal/mol, respectively. These effects of PhSO2 groups are compared and contrasted with those of CN groups.
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    Journal of Physical Organic Chemistry 1 (1988), S. 267-273 
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    Keywords: Organic Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: The PE spectra of four stable bicyclic triaziridines with trifluoromethyl, methyl, phenyl, spirocyclopentane and spirocyclohexane substituents are measured. From a comparison of these experimental data with MNDO calculations the energies and the interactions of the nitrogen lone-pair orbitals were obtained. The trifluoromethyl group may be reliably simulated by a fluorine atom. The ionization potentials are unexpectedly high and so are the cyclovoltammetric anodic potentials. The MNDO valence electron densities are in agreement with the comparatively small differences in the chemical shifts of the differently substituted nitrogens of the triaziridine rings.
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    Journal of Physical Organic Chemistry 1 (1988), S. 275-280 
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    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: In order to examine the substituent effect of ethylenedithio and trimethylenedithio groups on electron acceptors, the two title compounds were prepared in one step from the corresponding quinones. These species behave as weak π-electron acceptors owing to the electronic and sterical effects of the fused groups. Only the bis(ethylenedithio) derivative formed a charge-transfer complex with tetrathiotetracene, which showed a moderate electric conductivity of 2·0 × 10-2 S cm-1. In addition, both species oxidized copper, sodium, and potassium iodides to give the corresponding deeply colored metal salts, most of which were semiconductive. The naphtho analogs were similarly studied, but hardly served as electron acceptors.
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    Journal of Physical Organic Chemistry 1 (1988), S. 259-265 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: 1-(Phenylazo)-1-(2-pyridyl)ethyl hydroperoxide, 1, 1-(phenylazo)-1-(2-furyl)ethyl hydroperoxide, 2, phenylazo(2-furyl)methyl hydroperoxide, 3, 1-(phenylazo)-1-(4-anisyl)ethyl hydroperoxide, 4, were synthesized in moderate yield by autoxidation of the phenylhydrazones in benzene. The ionic oxidation of benzyl methyl sulfide in benzene by 1-4 yielded the sulfoxide and the metastable α-azo hydroxides in essentially quantitative yield. The reaction was of the first order in α-azo hydroperoxide and sulfide, respectively. The relative reactivity series found was: 1(1.0) 〈4(1.4) 〈 phenylazo(4-anisyl)methyl hydroperoxide 5 (2·9) 〈2 (3·8) 〈 3 (9·6). α-Methyl substitution was found to slow the rate of oxygen-atom trasfer by a factor of 2 to 2.5. The low relative reactivity of 1 was opposite that expected based on electronic effects. Competitive intramolecular hydrogen bonding of the hydroperoxy proton to the pyridyl nitrogen in 1 accounted for the observed result.
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  • 75
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    Journal of Physical Organic Chemistry 1 (1988), S. 241-245 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The rates of solvolysis of l-aryl-l-phenyl-2,2-dimethylpropyl(1) p-nitrobenzoates and of aryldiphenylmethyl-p-nitrobenzoates (2) were measured in 80% acetone. An inverse order of reactivity, kp-CF3/km- CF3 〉 l was observed for 1 but not for 2. The X-ray crystallogoraphic study of the parent compounds, l,l-diphenyl-2,2-dimethylpropyl-p-nitrobenzoate (1b) and triphenylemethyl benzoate (3b), and of 2-phenyl-2-propyl-p-nitrobenzoate (4) indicated that in the highly congested system 1 both phenyl rings were nonplanar, whereas the phenyl rings in 3 and 4 were essentially planar.
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  • 76
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    Journal of Physical Organic Chemistry 2 (1989), S. 103-109 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A preliminary theoretical study of the mechanisms for the reactions of the perchlorofluoroethanes CF2ClCCl3 (1), CF2ClCCl2F (2) and CF3CCl3 (3), with nucleophiles has been carried out by the MNDO method, following the experimentally suggested process shown in Scheme 1. The unlikely chlorophilic attack in the first step of Scheme 1 has been shown to be feasible for 1, 2 and 3 by analysis of the MO interactions. The second step has been found to be affected by the anionic hyperconjugation which stabilizes the anions CF2ClCCl2- (4), CF2ClCClF- (5) and CF3CCl2- (6) and would make reactions (2) (the second step) unfeasible in gas phase, but in solution reaction (2) may still easily occur for 4 and 5.
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  • 77
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    Journal of Physical Organic Chemistry 2 (1989), S. 146-160 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The alkaline hydrolysis of several alkylphosphonates and alkylphosphonyl chlorides has been investigated by molecular mechanics calculations (MM2, 1985 version). The difference of the steric energies (ΔE) between tetracoordinate substrate and pentacoordinate transition state of phosphorus compounds represents the activation energy (ΔE≠) in hydrolysis. The change of ΔE for various alkyl groups relative to methyl group (ΔΔER) is suggested as a measure of the steric effect of substituents. Thus the correlation analysis involving log k and ΔΔER of the branched alkyl group gives good results and it is reasonable to anticipate that analogous treatment using ΔΔER for the straight chain alkyl group is not satisfactory owing to the minor contribution of steric effect of the latter. However, the multiple regression analysis of log k with ΔΔER and Taft's σ* provides very good results. As shown by us, for the hydrolytic reactions studied, the proposed ΔΔER is much better than Taft's Es and Charton's ν, the commonly used well-known steric parameters in the chemistry of carbon compounds.
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  • 78
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    Journal of Physical Organic Chemistry 2 (1989), S. 161-176 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Cyclobutanediyl (2) has been studied in both its singlet and triplet states by ab initio electronic structure theory. The triplet, which is the ground state of the molecule, exists in both C2h and C2v forms which interconvert via a Cs transition state. For the singlet, only a C2h form is found. It passes, via a Cs transition state, onto the C2v surface on which bicyclobutane (3) is the only minimum. The ring-flipping (inversion) process in 3 includes the singlet biradical as an intermediate, and involves a novel, non-least motion path similar to one previously proposed by Gassman. Semiclassical periodic orbit theory indicates that the various minima on both the singlet and triplet surfaces can interconvert via quantum mechanical tunneling.
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    Biospectroscopy 1 (1995), S. 1-1 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
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  • 80
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: We observed fluorescence emission from cyclohexane (CH) and methylcyclohexane (MCH) using picosecond pulses at 298-300 nm from a frequency-doubled cavity-dumped R6G dye laser. The emission maxima for CH and MCH are 209 and 215 nm, respectively, which agree with previous studies using vacuum ultra-violet (VUV) excitation near 150 nm. The fluorescence intensities depended quadratically on peak laser intensity indicating two-photon excitation. The intensity decays resulting from two-photon excitation were measured using frequency-domain fluorometry and were found to be nearly singly exponential ranging from 0.59 to 0.80 ns. Two-photon induced fluorescence of cyclic and linear alkanes may provide new intrinsic spectroscopic probes of biological molecules. © 1995 John Wiley & Sons, Inc.
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  • 81
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
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    Notes: The nature of the chromophore binding site of light-adapted bacteriorhodopsin is analyzed by using all-valence electron MNDO and MNDO-PSDCI molecular orbital theory to interpret previously reported linear and nonlinear optical spectroscopic measurements. A total of 45 binding site models are investigated. The binding site is simulated by including the chromophore, the lysine residue (LYS216), the following nearby amino acids (ARG82, ASP85, ASP115, ASP212, THR90, TRP86, TRP138, TRP182, TYR57, TYR83, and TYR185) and zero, one, or two divalent cations. We conclude that the unique two-photon properties of the chromophore are due in part to the electrostatic field associated with a Ca2+ ion near to the chromophore. Four amino acids and three water molecules contribute significantly to the assigned chromophore adjacent calcium binding site (ASP85, ASP212, TYR57 and TYR185), and two conformational minima are predicted. The higher energy conformation has the calcium ion stabilized primarily by ASP85 and the chromophore imine proton by ASP212. The lower energy conformation has the calcium ion stabilized primarily by ASP212 and the imine proton by ASP85. The latter configuration is more stable due to strong hydrogen bonding between TYR185 and ASP212 coupled with electrostatic stabilization of the divalent cation by TYR57. Although both tyrosine residues are predicted to exhibit some “unprotonated” character, models involving full deprotonation of either TYR57 or TYR185 do not fit the spectroscopic data. We conclude that the cation binding site identified in this study is the second high affinity binding site for calcium, and that the chromophore binding site is, to a first approximation, positively charged. The chromophore “1Bu*+” and “1Ag*-” states, despite extensive mixing, exhibit significantly different configurational character. The lowest-lying “1Bu*+” state is dominated by single excitations (〉 80% for all models studied) whereas the second-excited “1Ag*-” state is dominated by double excitations (〉 70% for all models studied with extensive participation by spin-coupled triplet-triplet excitations). © 1995 John Wiley & Sons, Inc.
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  • 82
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Fourier-transform infrared spectroscopy is applied to examine interactions between divalent metal ions (M2+) and the COO- groups in the M2+-binding sites of calmodulin as well as effects of M2+ binding on the main chain conformation. Bands due to the symmetric and antisymmetric stretches of the COO- groups in the amino-acid side chains give information on the coordination of the COO- groups to M2+, and the amide-I' bands are useful for studying changes in the secondary structure of the protein main chain upon M2+ binding. Infrared deconvolved spectra as well as second-derivative spectra are sensitive to structural differences among the M2+-bound forms (M2+ = Mg2+, Ca2+, Sr2+, and Cd2+). Bands at about 1658, 1553, and 1424 cm-1 are characteristic of the Ca2+-bound form, and are called, respectively, marker bands I, II, and III of the active-type protein. The Sr2+- and Cd2+-bound forms show deconvolved and second-derivative spectra similar to those of the Ca2+-bound form, whereas the Mg2+-bound form gives second-derivative and deconvolved spectra close to those of the inactive M2+-free form. Broad parallelism is found to exist between the marker-band intensities of the M2+-bound forms and the abillities of M2+ to stimulate calmodulin-dependent phosphodiesterase activity. Assignments of the marker bands are discussed. © 1995 John Wiley & Sons, Inc.
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    Biospectroscopy 1 (1995), S. 71-82 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Fast photovoltage measurements in the pico- and nanosecond time range represent a valuable tool for the study of excitation energy trapping, kinetics of charge separation, and the location of intermediary acceptors in the photosynthetic reaction center. However, data recording and data analysis are complex. In a preceding article (Wulf and Trissl, Biospectroscopy, 1 (1995), pp. xx-xx) we have described the theoretical fundamentals of data analysis. Here we describe the experimental set-up, calibration procedures, and strategies for the determination of the parameters involved. Limitations of the method will be discussed. © 1995 John Wiley & Sons, Inc.
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  • 84
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Spectroscopic technique coupled with electrochemical oxidation has been used to study the redox-mechanism of 6-mercaptopurine. Electrochemical oxidation of 6-mercaptopurine has been studied in the pH range 2.0-10.0 by linear and cyclic sweep voltammetry, coulometry and constant potential electrolysis. Spectroscopic technique has been used to monitor the clevage of the S—S bond in the UV-absorbing intermediate generated during electrooxidation. The decay has been observed in a pseudo first order reaction. The ultimate products of oxidation in controlled potential electrolysis have been found as 6-mercaptopurine and purine-6-sulfinic acid. Tentative mechanisms for the formation of the products have also been suggested. It is concluded that spectroscopic studies coupled with electrochemical studies provide a uniquely invaluable insight into the redox mechanism of biologically significant molecules. © 1995 John Wiley & Sons, Inc.
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    Biospectroscopy 1 (1995), S. 101-104 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: The conformational A-B transition of natural random-sequence NaDNA can be evoked simply by increasing the water activity in the specimen. Infrared spectroscopic data create a basis for the idea that the relevant solvent action proceeds in a global sense comprising a collective influence of the water molecules belonging to DNA hydration shell rather than by directly bound water molecules. This conclusion is consistent with the results of Molecular Dynamics simulations applied to various DNA fragment-water systems. © 1995 John Wiley & Sons, Inc.
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  • 86
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: We report the measurement of backscattering in-phase dual circular polarization (DCPI) Raman optical activity (ROA) for the simple alanyl peptides L-alanyl-L-alanine ([L-Ala]2), L-alanylglycine (L-Ala-Gly), glycyl-L-alanine (Gly-L-Ala), and L-alanyl-L-alanyl-L-alanine ([L-Ala]3) in aqueous solutions. Empirical correlations between ROA features and the amino acid composition of the peptides are described. It is shown that the sum of the DCPIROA spectra for L-Ala-Gly and Gly-L-Ala is nearly the same as the corresponding ROA spectrum for (L-Ala)2. Additionally, the DCPIROA spectrum for (L-Ala)2 is very close to that of (L-Ala)3, as has been observed previously using backscattering unpolarized incident circular polarization (ICPu) ROA. The ROA contributions of the different L-Ala groups, which occur separately in the two glycyl peptides of alanine and jointly in (L-Ala)2, are described in terms of the extent of vibrational coupling between peptide subunits. From these results, it appears that ROA has a more local sensitivity to vibrational coupling than is found in VCD or electronic circular dichroism. © 1995 John Wiley & Sons, Inc.
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  • 87
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    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: As a follow-up to fluorescence and fluorescence-excitation spectroscopy at 170 K of all-trans-spheroidene free in solutionsY. Watanabe, T. Kameyama, Y. Miki, M. Kuki, and Y. Koyama, “The 2′Ag- state and two additional low-lying electronic states of spheroidene newly identified by fluorescence and fluorescence-excitation spectroscopy at 170K,” Chem. Phys. Lett. 206, 62-68 (1993). and bound to the light-harvesting complex of Rhodobacter sphaeroides 2.4.1,Y. Koyama, Y. Miki, T. Kameyama, R. J. Cogdell, and Y. Watanabe, “Low-lying electronic levels of spheroidene bound to the light-harvesting (LH2) complex of Rhodobacter sphaeroides 2.4.1. as determined by fluorescence and fluorescence-excitation spectroscopy at 170K,” Chem. Phys. Lett. 208, 479-485 (1993). 13′-cis-spheroidene in n-hexane solution has been examined for comparison. All-trans-spheroidene exhibits efficient internal conversion from the 3Ag- to the 2Ag- state and fluorescence from both the 2Ag- and Bu+ states, while 13--cis-spheroidene exhibits internal conversion from the “3Ag-” state to the “Bu+” state and fluorescence only from the “Bu+” state. Thus, all-trans-spheroidene can provide two channels of carotenoid-to-bacteriochlorophyll singlet-energy transfer, while 13′-cis-spheroidene can provide only one. This must be a reason for the natural selection of the all-trans configuration for the light-harvesting function. © 1995 John Wiley & Sons, Inc.
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    Biospectroscopy 1 (1995), S. 149-156 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: A series of copper bilirubinate complexes (CuBR) was synthesized in solution and in solid state to mimic the black color of the black-pigment gallstone and to explore the formation mechanism of the gallstonein vitro. The variation of the copper contents of these samples indicated that CuBR also exhibits nonstoichiometric characteristics from the FTIR study, i.e., both the so-called acid and neutral copper complex moieties exist in CuBR. The NH groups in pyrrole and lactam groups of bilirubin (H2BR) are binding to the copper ions. An EPR study demonstrates the generation of free radicals and the variation of its electronic structure and conjugation system in the skeleton of H2BR molecule during complex formation. A polymer of CuBR may form through the reaction of H2BR with copper ions. © 1995 John Wiley & Sons, Inc.
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    Biospectroscopy 1 (1995), S. 157-162 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Surface-Enhanced Raman Scattering (SERS) spectra of bilirubin-metal ion (Cu2+, Co2+, Zn2+, Cd2+) complexes (MBR) are reported. These spectra reveal significant differences between MBR and bilirubin (BR) itself. But SERS spectra of bilirubin-Cu2+, Co2+, Zn2+, Cd2+ complexes are similar to each other. The mole ratio of bilirubin-metal in the complexes M2+ : BR = 1 : 1 was measured. Empirical assignments of the major SERS bands are given. The spectrum of CuBR in solution is consistent with a square planar structure. It should be noted, however, that H2O or COOH of another BR molecule occupy the positions above and below the plane in solutions of complexes of this type and forms Cu—O bond.By comparing the SERS spectra of bilirubin-copper (or zinc) and biliverdin-copper (or zinc) complexes, the similar Raman frequencies and relative intensities were attributed to the oxidation of the bilirubin-copper (or zinc) complex to the green biliverdin-copper (Zn) complexes. It is shown that . © 1995 John Wiley & Sons, Inc.
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  • 90
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: The amino-acid sequences of the L- and M-subunits of the reaction centers (RC) from four purple photosynthetic bacteria were compared by the use of CLUSMOL/S (Clustering System for Molecules/Sequences), and conserved and character-conserved amino acids were extracted. Extended Hückel molecular orbital (MO) calculations were made, based on the three-dimensional structure of the Rhodopseudomonas viridis RC, for eleven composites of pigments, in which the sidechains (except for aliphatic sidechains) of the above amino acids within a distance of 6 Å from both of each pair of electron donor and acceptor were included. Calculations of the electronic coupling between each pair of donor and acceptor as well as evaluations of mixing of the lowest unoccupied molecular orbital (LUMO) of one chromophore with the orbitals of another chromophore and amino-acid sidechains elucidated the roles of the sidechains in the electron transfer reactions: (1) L181-Phe and M208-Tyr function as a pair of bridges in the electronic coupling among pigments bacteriopheophytin in the M-branch (HM), accessory bacteriochlorophyll in the M-branch (BM), one of the special-pair bacteriochlorophylls in the M-branch (PM), one of the special-pair bacteriochlorophylls in the L-branch (PL), accessory bacteriochlorophyll in the L-branch (BL), and bacteriopheophytin in the L-branch (HL), and can affect the special-pair bacteriochlorophylls (P) → HL electron transfer; (2) M250-Trp plays a crucial role in the HL → primary quinone (QA) electron transfer, but L216-Phe does not facilitate the HM → secondary quinone (QB) electron transfer; (3) the Fe2+ ion and the ligating histidines facilitate the QA → QB electron transfer; (4) L162-Tyr plays a key role in the third heme in the cytochrome subunit (Heme) → P (PM plus PL) electron transfer. © 1995 John Wiley & Sons, Inc.
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  • 91
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    Biospectroscopy 1 (1995), S. 187-206 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: The oxidized radicals of aromatic amino acids, 4-methylimidazole and phenol were generated by UV irradiation at low temperature. The radicals were monitored by EPR spectroscopy. For the first time, infrared (IR) modes characteristic of the tyrosine, tryptophan, phenylalanine, and histidine radicals were obtained by FTIR difference spectroscopy between the ground state and the radical state. The effects of D- (on Tyr and phenol) or 15N- (on His) labeling on the IR modes of the radicals were studied, as were the influence of hydrogen bonding and of pH. These parameters were studied to model the possible radical structures and environments in proteins. The radicals obtained with tyrosine, phenol, and 4-ethylphenol present six main IR modes: a combination mode at ∼ 2110-2106 cm-1; the v8b(CC) mode at 1550-1556 cm-1, the v7a(CO) and v19b(CC) modes both at 1515-1500 cm-1, which are distinctly affected by D-labeling of the phenol ring; the 14(vCC + δCH) mode at 1290-1288 cm-1, which is strongly modified when the radical is hydrogen bonded; and the 9a(CC) mode at 1163-1159 cm-1. These IR modes partly confirm the assignments made by resonance Raman (RR) spectroscopy and should help to obtain precise structure and force field calculations for the radicals. The deprotonated 4-methylimidazole radical (4-MeIm·) is obtained at pH 12. It has characteristic IR modes at 1593 v(CC), 1425 δCH3, 1376 δCH3, 1315 cm-1, 1213 cm-1 and 1098 cm-1 δ(CH). The methyl modes seem strongly downshifted upon radical formation, while the ring modes appear less affected. In particular, the C4C5 double-bond character is conserved. The protonated 4-methylimidazole radical formed at pH ≤ 6 is characterized by signals at 1433 cm-1, 1380 cm-1, 1310 cm-1, 1227 cm-1, and 1172 cm-1. The histidine and tyrosine radicals present similar IR modes as the corresponding model of their sidechain. For all the amino acids, the vas(COO-) and vs(COO-) modes of the terminal carboxylate were respectively up- and downshifted by ∼ 20 cm-1 upon the radical formation. This effect suggests that, in a protein, the amide bond of the amino acid could also be influenced by the radical formation. © 1995 John Wiley & Sons, Inc.
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    Biospectroscopy 1 (1995) 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
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    Biospectroscopy 1 (1995), S. 351-356 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Though the strong affinity of Congo red and thioflavin S for amyloid deposits has been known for a long time, the binding mechanism of these biological dyes to amyloid sites is still not understood. In the present work, the competition of these two dyes for binding in Alzheimer amyloid is investigated. Analyses by optical microscopy and microspectrofluorimetry were performed on several series of stained diseased brain sections. Microspectrofluorimetric analyses showed that bound Congo red and bound thioflavin S have characteristic spectra in which the fluorescence maxima are distinct of those for the free dyes. Both, optical microscopic analyses and fluorescence measurements of stained brain sections indicated that Congo red and thioflavin S compete with each other at the same interacting site on diseased cerebral tissue. The staining efficiency of the replacing dye seems to be a maximum for a concentration of about 1%. © 1995 John Wiley & Sons, Inc.
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    Biospectroscopy 1 (1995), S. 365-373 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Fourier transform infrared spectroscopy was used to investigate, without any destructive interference, interactions of the cryoprotective agents, glycerol and dimethyl sulfoxide with Bradyrhizobium japonicum. The intracellular spectrum of glycerol, obtained by subtracting the spectrum of control bacteria from that of glycerol-treated bacteria, showed no differences in infrared features compared to that of pure glycerol. This was not the case when dimethyl sulfoxide treatment was used. The intracellular spectrum displayed important modifications compared to that of the pure chemical. Spectral analysis showed that glycerol and dimethyl sulfoxide uptake required only a few minutes. Moreover, the infrared features resulting from the presence of pure glycerol, in bacteria, were still existent for up to 2 or 3 hours after thawing process. The deconvoluted Amide I and Amide II bands of bacterial proteins reflected important changes in secondary structure after treatment of bacteria with dimethyl sulfoxide (increase in β-sheet and loss of random coil content). In contrast to glycerol, the cryoprotective action of dimethyl sulfoxide probably involves interactions with a wide range of intrabacterial species. © 1995 John Wiley & Sons, Inc.
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  • 95
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: The transmission infrared spectra of exfoliated endocervical mucin-producing columnar epithelial cells and the attenuated total reflectance (ATR) infrared spectra of the single-columnar cell layer on the endocervical tissues have been measured and compared with the corresponding infrared spectra of the ectocervical squamous cells and squamous epithelium. The infrared spectra of the exfoliated cervical cells obtained from the present work are comparable with those directly measured from the epithelia on the cervical tissues by ATR technique. The transmission infrared spectra of endocervical columnar epithelial tissue containing some components of the underlying connective tissue have also been measured and compared with the ATR/FTIR (Fourier-transform infrared) spectra of the endocervical columnar epithelial tissue. The effects of the contaminated connective tissue on the infrared spectra of the endocervical columnar epithelial tissue have demonstrated that ATR/FTIR is a more desirable method than the transmission method to obtain meaningful and good-quality infrared spectra of tissue samples, especially samples consisting of thin layers of different types of tissues. Substantial differences in the infrared spectra between the columnar cells and squamous cells on the endocervical and ectocervical tissues, respectively, were evident. The strong glycogen bands in the infrared spectrum of the ectocervical squamous cells are absent in the spectrum of the endocervical columnar cells. This spectral change is similar to that observed in malignant squamous cells. Therefore, if the decrease in the intensity of the glycogen bands is used as the only criterion for the determination of cellular abnormalities in the cervix, the presence of a large number of normal endocervical columnar cells in the cervical specimen would lead to a false result. Consequently, in addition to the glycogen bands, other features in the infrared spectra should be considered for the evaluation of abnormalities in exfoliated cervical epithelial cells. In order to identify the spectral features that are unique to endocervical columnar cells, the infrared spectra of an aqueous solution of glycogen, the mucus from the endocervix, and the connective tissues from both the endocervix and the ectocervix have also been measured and analyzed. © 1995 John Wiley & Sons, Inc.
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    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biospectroscopy 1 (1995), S. 375-385 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Ultraviolet resonance Raman spectra have been measured for human serum albumin (HSA) and its complexes with three types of ligands. Tyr and Trp Raman bands of ligand-free HSA are strongly enhanced with 240-nm excitation compared with those of aqueous amino acids, indicating that the side chains of some Tyr residues and the unique Trp at position 214 are hydrogen bonded in hydrophobic environments. The high intensity of Tyr and Trp Raman scattering remains unchanged in a wide pH range of 3.5-9.0 and the microenvironments of the Tyr and Trp residues seem conserved in this pH range. The Tyr Raman intensity of HSA increases upon binding of palmitic acid, indicating hydrophobic interactions between the Tyr phenol ring and the aliphatic chain of the bound fatty acid. Binding of warfarin, on the other hand, does not affect the Tyr Raman intensity. Instead, an increase is observed for the Raman intensity of Trp-214, which is located at the opening of the warfarin binding site. Concomitantly a conformation-marker Raman band of Trp-214 changes in frequency and the warfarin Raman intensity increases, suggesting direct hydrophobic interactions between Trp-214 and warfarin. Complexation of ibuprofen and HSA increases the Raman intensity of Tyr but not of ibuprofen, which is ascribed to the formation of a hydrogen bond between the carboxylate of ibuprofen and the phenolic OH of Tyr-411, the unique Tyr residue at the ibuprofen binding site. Hydrophobic interactions and hydrogen bonding of Tyr and Trp residues play a key role in ligand binding of HSA. © 1995 John Wiley & Sons, Inc.
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  • 97
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: The Raman bands associated with different rotamers of hexadienoyl ethyl thiolester, CH3—CH=CH—CH=CH—C(=O)—S—CH2—CH3, have been partially assigned using recent conformational and vibrational spectroscopic analyses of ethyl thiocrotonate CH3—CH=CH—C(=O)—S—CH2—CH3.1 In particular, rotational isomers involving the =CH—C(=O) and —S—CH2— axes have been characterized. The assignment of the vibrational modes of different conformers of hexadienoyl ethyl thiolester was further facilitated by variable-temperature (+20°C to -90°C) Raman studies on the neat thiolester. High-quality Raman spectra of hexadienoyl-coenzyme A bound to the enzyme enoyl-CoA hydratase were obtained using 647.1-nm excitation and Raman difference spectroscopy. The findings provided by analysis of the ethyl thiolester model compound enable us to conclude that conformational selection occurs for the CoA analog upon binding, resulting in the presence of a single-rotamer population in the hexadienoyl moiety on the enzyme. The hexadienoyl-CoA was labeled with 18O in the C=O group and, separately, with 13C at the C2 position. A comparison of Raman data for the free and bound ligands, isotopically labeled and unlabeled, indicates that strong π-electron polarization occurs in only a part of the hexadienoyl chain, viz, in the C=C—C=O fragment, upon binding. The polarization gives rise to important contributions from canonical (resonance) forms of the type —C+—C=C—O-. In contrast, the C4=C5 linkage (where the carbon atom numbering is C6—C5=C4—C3=C2—C1=O) seems little perturbed in the bound ligand. The causes and mechanistic advantage of the observed localized polarization are discussed. © 1995 John Wiley & Sons, Inc.
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  • 98
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biospectroscopy 1 (1995), S. 413-421 
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Fluorescence-line-narrowing (FLN) spectra are presented for Sn cytochrome c (Snc) obtained under Q0-0 and Q0-1 excitation and for Zn cytochrome c (Znc) under Q0-1 excitation. Vibrational frequencies of the ground and first excited states are reported for Snc. Additional excited-state Znc frequencies are also presented, thus contributing to a previous FLN Znc investigation. The spectra of Snc shows more phonon broadening than for Znc, but vibrational frequencies of the S0 and S1 states could be obtained and the distribution function of the 0, 0 transition was determined. Snc and Znc showed good agreement in their excited-state vibrational frequencies. Some S1 vibrational frequencies of Znc are seen to downshift with respect to ground-state vibrations, suggesting that the porphyrin S0 to S1 expansion observed in other porphyrin systems also occurs in cytochrome c derivatives. © 1995 John Wiley & Sons, Inc.
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  • 99
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Nearly complete vibrational assignments have been obtained for a heme model, nickel etioporphyrin-I (NiEPI), using variable-wavelength resonance Raman (RR), and FT-Raman (FT-R), as well as infrared (IR) spectroscopy, on a series of isotopomers labeled at positions in the skeleton (15N, β-13C, meso-d4, 15N-meso-d4) and in the peripheral substituents (methyl-d12, ethyl-d8, and ethyl-d12). The vibrational bands are assigned to the porphyrin skeletal and substituent modes on the basis of the mode description scheme developed for nickel octaethylporphyrin (NiOEP) with the aid of a normal-mode analysis of NiEPI, explicitly including the peripheral substituents, i.e., the methyl and ethyl groups. The previously reported NiOEP force field was refined to account for the observed isotope shifts of NiEPI isotopomers. An important result is the requirement of relatively large, long-range force constants for methine bridge bonds on opposite sides of the porphyrin ring. These 1-8 and 1-9 interaction force constants are required to reproduce the frequencies and isotope shifts of six Cα-Cm stretching modes and especially to predict the relative order of the two highest-frequency Eu modes, v(Cα-Cm) (v38, ∼ 1570 cm-1) and v(Cβ-Cβ) (v37, ∼ 1600 cm-1). Most of the substituent (methyl and ethyl) vibrations are located in the RR and IR spectra. Strong RR enhancement of some substituent modes can be attributed to hyperconjugative interaction of the aliphatic groups with the porphyrin a1u orbital, as well as vibrational mixing of substituent modes with the nearby skeletal modes. © 1995 John Wiley & Sons, Inc.
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  • 100
    ISSN: 1075-4261
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Physics
    Notes: Surface-enhanced Raman spectra (SERS at Creighton colloidal silver) and UV/visible spectra have been recorded for an antimicrobial agent (pefloxacin) at a biologically active concentration (ca. 10-6 mol/L-1). The adsorption of pefloxacin on the silver surface occurs both via the carboxylate group and the carbonyl of the pyridinone ring. The conjugated part of the molecule is tilted and gives rise to a charge transfer between the drug and the plasmon surface. However the orientation of the drug on the colloid varies with the concentration of pefloxacin, salt addition, and pH. Adsorption via only the carboxylate is privileged in presence of strongly competitive anions such as C1-. Thus the carbonyl of the pyridinone ring is desorbed, and the charge transfer is not detected. In basic medium the competitive OH- ion leads to similar orientation changes. For acidic pHs few residual molecules having a carboxylate function, or few carboxylic species bonded via the pyridinone C=O group, remain adsorbed on the aggregated and unstable silver surface. The spectroscopic analyses and the measurements of the particle size of the colloid show that added salt increases the aggregation and enhances the pefloxacin SERS signals if the anion is not competitive. In the presence of NaNO3 an increase of the plasmon oscillations of the metal and a larger number of adsorption sites could explain the SERS amplitude. The competitive anions C1- and OH- to a lesser extent limit the colloid aggregation, pefloxacin adsorption, and SERS enhancement. The influence of the charge transfer on the Raman intensity appears to be weak. © 1995 John Wiley & Sons, Inc.
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