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  • 1
    Digitale Medien
    Digitale Medien
    Berkeley, Calif. : Berkeley Electronic Press (now: De Gruyter)
    The @international journal of biostatistics 4 (2008), S. 1 
    ISSN: 1557-4679
    Quelle: Berkeley Electronic Press Academic Journals
    Thema: Biologie , Mathematik , Medizin
    Notizen: The commonly used two-sample tests of equal area-under-the-curve (AUC), where AUC is based on the linear trapezoidal rule, may have poor properties when observations are missing, even if they are missing completely at random (MCAR). We propose two tests: one that has good properties when data are MCAR and another that has good properties when the data are missing at random (MAR), provided that the pattern of missingness is monotonic. In addition, we discuss other non-parametric tests of hypotheses that are similar, but not identical, to the hypothesis of equal AUCs, but that often have better statistical properties than do AUC tests and may be more scientifically appropriate for many settings.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 2
    Digitale Medien
    Digitale Medien
    Berkeley, Calif. : Berkeley Electronic Press (now: De Gruyter)
    Statistical applications in genetics and molecular biology 7.2008, 1, art2 
    ISSN: 1544-6115
    Quelle: Berkeley Electronic Press Academic Journals
    Thema: Biologie
    Notizen: The relationship between speciation times and the corresponding times of gene divergence is of interest in phylogenetic inference as a means of understanding the past evolutionary dynamics of populations and of estimating the timing of speciation events. It has long been recognized that gene divergence times might substantially pre-date speciation events. Although the distribution of the difference between these has previously been studied for the case of two populations, this distribution has not been explicitly computed for larger species phylogenies. Here we derive a simple method for computing this distribution for trees of arbitrary size. A two-stage procedure is proposed which (i) considers the probability distribution of the time from the speciation event at the root of the species tree to the gene coalescent time conditionally on the number of gene lineages available at the root; and (ii) calculates the probability mass function for the number of gene lineages at the root. This two-stage approach dramatically simplifies numerical analysis, because in the first step the conditional distribution does not depend on an underlying species tree, while in the second step the pattern of gene coalescence prior to the species tree root is irrelevant. In addition, the algorithm provides intuition concerning the properties of the distribution with respect to the various features of the underlying species tree. The methodology is complemented by developing probabilistic formulae and software, written in R. The method and software are tested on five-taxon species trees with varying levels of symmetry. The examples demonstrate that more symmetric species trees tend to have larger mean coalescent times and are more likely to have a unimodal gamma-like distribution with a long right tail, while asymmetric trees tend to have smaller mean coalescent times with an exponential-like distribution. In addition, species trees with longer branches generally have shorter mean coalescent times, with branches closest to the root of the tree being most influential.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 3
    Digitale Medien
    Digitale Medien
    Berkeley, Calif. : Berkeley Electronic Press (now: De Gruyter)
    Statistical applications in genetics and molecular biology 7.2008, 1, art1 
    ISSN: 1544-6115
    Quelle: Berkeley Electronic Press Academic Journals
    Thema: Biologie
    Notizen: Based on previous studies related to the yeast cell cycle, it is well known that the underlying cellular network in yeast consists of many interactions between genes that have periodic expression patterns during the cell division cycle. In this study, it is proposed that cell cycle-specific gene expression can be understood as a phenomenon of collective synchronization or, in other words, an ensemble of non-identical oscillating response signals from different systems. Therefore, we aimed to apply the theory of statistical multivariate phase synchronization to understand the cell's cyclic transcriptome as a phenomenon of collective synchronization. To this end, a novel algorithm called Self-Organizing Maps with statistical Phase Synchronization (SOMPS) is proposed and evaluated using yeast cell cycle-specific gene expression data. From the evaluation experiments, we draw the following conclusions: 1) It is possible to find groups of genes that have biological interactions with each other and significantly share gene ontology slim terms of biological processes using the theory of multivariate phase synchronization with cell cycle-specific gene expression signals; 2) Among all output clusters of SOMPS, a relatively large cluster with high periodicity with respect to its trained mean field can be considered a prominent cluster; 3) For each gene, it is possible to identify the degree of the strength of its biological interactions with other genes using the coupling strength of synchronization with its trained mean field; and 4) It is feasible to understand cell cycle-specific expression patterns as a phenomenon of collective synchronization.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 4
    Digitale Medien
    Digitale Medien
    s.l. ; Stafa-Zurich, Switzerland
    Journal of biomimetics, biomaterials, and tissue engineering Vol. 1 (July 2008), p. -2--1 
    ISSN: 1662-100X
    Quelle: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Thema: Biologie , Technik allgemein
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 5
    Digitale Medien
    Digitale Medien
    s.l. ; Stafa-Zurich, Switzerland
    Journal of biomimetics, biomaterials, and tissue engineering Vol. 1 (July 2008), p. 37-47 
    ISSN: 1662-100X
    Quelle: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Thema: Biologie , Technik allgemein
    Notizen: In this work, two systems of mesoporous bioactive glasses (MBGs) with a series ofdifferent SiO2:CaO:P2O5 ratios were derived via a sol-gel method involving the usage of blockcopolymers Pluronic F127 and P123 as templates, respectively. A two-dimensional hexagonal(P6mm) mesoporous structure was obtained in the two systems with a SiO2:CaO:P2O5 ratio of80:16:4. With the decrease of the SiO2 content, the porous structure of MBGs became less regular,and the BET surface area and the pore volume were also decreased. Mesoporous bioactive glassesfrom the template F127 displayed a higher degree of bioactivity than those from the template P123,as a result of the existence of more defects on the walls of the mesopores
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 6
    Digitale Medien
    Digitale Medien
    s.l. ; Stafa-Zurich, Switzerland
    Journal of biomimetics, biomaterials, and tissue engineering Vol. 1 (July 2008), p. 1-36 
    ISSN: 1662-100X
    Quelle: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Thema: Biologie , Technik allgemein
    Notizen: The paper reports about different kind of sutures, their suitability and performance. An ideal suture should possess many characteristics such as - easy to handle, bio-compatibility, minimal tissue reaction, resistance to bacterial growth, adequate tensile strength and elasticity, knot security, strength loss versus healing rate of tissues. Selection of suture is often very complex for satisfying host of physical, mechanical and biological properties, and fulfilling contradictory requirements in varied applications. The paper develops an understanding about the selection of suture depending on the varied requirement. Past research work pertaining to the development of suture as reported in this paper, provides insight about the suitability of different surgical sutures and possible direction of future research
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 7
    Digitale Medien
    Digitale Medien
    s.l. ; Stafa-Zurich, Switzerland
    Journal of biomimetics, biomaterials, and tissue engineering Vol. 1 (July 2008), p. 49-56 
    ISSN: 1662-100X
    Quelle: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Thema: Biologie , Technik allgemein
    Notizen: A general model of transport of gases in an artificial epidermal layer (membrane) wasestablished. The model was developed based on Dusty Gas Model (DGM), solution diffusion andsurface diffusion. As a result, solutions of the model for different transport conditions were derived.In this investigation, parameters of oxygen and carbon dioxide gases through an artificial“epidermal” membrane of varying porosity were used to calculate semi-empirical solutions of thegeneral model. In other words, the solutions of the general model were analytically obtained fordifferent transport conditions, using experimentally obtained parameters of oxygen and carbondioxide gases through the artificial “epidermal” membrane of varying porosity. The obtainedsolutions of the general model were for the oxygen and carbon dioxide gases through the artificial“epidermal” membrane of the varying porosity
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 8
    Digitale Medien
    Digitale Medien
    s.l. ; Stafa-Zurich, Switzerland
    Journal of biomimetics, biomaterials, and tissue engineering Vol. 1 (July 2008), p. 57-68 
    ISSN: 1662-100X
    Quelle: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Thema: Biologie , Technik allgemein
    Notizen: Hydroxyapatite-zirconia composites have received much attention during the last decadedue to their combination of the desirable mechanical properties of zirconia and the excellentbioactivity of hydroxyapatite (HA). However, thermal decomposition of the hydroxyapatite phase andreaction between the zirconia phase and the hydroxyapatite phase remain a major problem in thehydroxyapatite-zirconia composites. In this study, thermally stable and fluorine-substitutedhydroxyapatite (Ca10(PO4)6(OH)0.8F1.2; coded as HA06F) was prepared by a sol-gel method to replacethe hydroxyapatite. Yttria-stabilized zirconia (YTZP) was also prepared by a sol-gel method in orderto produce HA06F-YTZP composites with 5, 10, 15, 20, 40, and 60 wt% YTZP by simple andcost-effective pressureless sintering. Thermogravimetric analysis (TGA) and x-ray diffraction (XRD)of the HA06F-YTZP composites showed that the thermal stability of the HA06F matrices could bemaintained when the YTZP content did not exceed 20 wt% and for sintering temperatures less than1400 oC. Dilatometric analysis and microstructural observation revealed that the YTZP phase in theHA06F-YTZP composites retarded the densification of the composites if the zirconia content wasover 20 wt%. Electron scanning microscopy (SEM) and high resolution transmission electronmicroscopy (HR-TEM) of the HA06F-YTZP composites showed that the YTZP second phase had asize in the nanometer scale and the reaction between the HA06F phase and the zirconia phase wassuppressed. Mechanical properties including the Knoop hardness, the Young’s modulus, and thefracture toughness of the HA06F-YTZP composites increased with the YTZP content until theoptimal content of 20 wt%; higher YTZP contents led to low mechanical properties due to poordensification of the composites and the severe thermal decomposition of the HA06F phase. Theoptimal HA06F-20YTZP composite also showed desirable attachment and proliferation of osteoblastcells. Nevertheless, the study of the composite system indicated the limitations of the pressurelesssintering technique. To achieve the full potential of the composites for medium or low load bearingapplications, a pressure-assisted sintering technique would still be necessary
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 9
    Digitale Medien
    Digitale Medien
    s.l. ; Stafa-Zurich, Switzerland
    Journal of biomimetics, biomaterials, and tissue engineering Vol. 1 (July 2008), p. 99-107 
    ISSN: 1662-100X
    Quelle: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Thema: Biologie , Technik allgemein
    Notizen: The limitations of autogenic, allogenic and xenogenic grafting methods have led to the developmentof synthetic grafts as an alternative. The aim of this study was to manufacture highly porous andwell interconnected hydroxyapatite scaffolds and modify them with a poly(lactic-co-glycolic acid)(PLGA)-bioactive glass composite coating to achieve mechanical properties close to those ofnatural cancellous bones. In this study, hydroxyapatite scaffolds were prepared from a calciumphosphate cement (CPC) powder and cell culture using fibroblast cells was done to examine thecytotoxicity of the materials used for the scaffolds. The average pore size of the scaffolds was foundto be 650μm and the total porosity was about 80%. The hydroxyapatite scaffolds without thecoating had a mean compressive strength and a mean compressive modulus of 0.74 MPa and 20.46MPa, respectively, which were in contrast to those of the scaffolds coated with the PLGA-bioacitveglass composite material (1.36 MPa and 24.58 MPa, respectively). The fibroblast cells wereobserved to proliferate well on the PLGA-bioactive glass coated scaffolds. The cells had alsopenetrated into the scaffold to a depth of approximately 2mm. Thus the scaffolds fabricated in thisstudy exhibited a favourable porous structure and good cell response which are desirable for bonetissue engineering
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 10
    Digitale Medien
    Digitale Medien
    s.l. ; Stafa-Zurich, Switzerland
    Journal of biomimetics, biomaterials, and tissue engineering Vol. 1 (July 2008), p. 69-79 
    ISSN: 1662-100X
    Quelle: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Thema: Biologie , Technik allgemein
    Notizen: Palmitic acid was added into drug-loaded poly(L-lactide) (PLLA) to modify the drugrelease profiles of the polymer. The acid was added in different concentrations and gradients acrossthe thickness of the polymer. Drug release was monitored using a UV spectrometer over a period of90 days. Degradation was studied using gel permeation chromatography and differential scanningcalorimetry (DSC) to follow the change in the molecular weight and glass transition temperaturerespectively. Addition of palmitic acid was found to accelerate the degradation of PLLA andresulted in an accelerated release of the drug as expected. Modification of release profiles bydesigning the acid gradient was also attempted. It was found that the total acid concentration is stillthe dominant factor over the gradient design in affecting the degradation and subsequently therelease profiles. Different drug concentrations also played a role in the different release profilesexhibited. Surprisingly the sample with lower drug concentration (2wt%) showed a much higherinitial burst than the 5wt% loaded samples. This was due to the induced nucleation of the polymerby the drug at low concentration resulting in higher crystallinity of the polymer and consequentlyoverall lower solubility of the drug
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 11
    Digitale Medien
    Digitale Medien
    s.l. ; Stafa-Zurich, Switzerland
    Journal of biomimetics, biomaterials, and tissue engineering Vol. 1 (July 2008), p. 81-89 
    ISSN: 1662-100X
    Quelle: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Thema: Biologie , Technik allgemein
    Notizen: The aim of this study was to investigate the feasibility of utilizing selective laser sintering(SLS) to build 3D porous tissue engineering scaffolds from small quantities of poly(L-lactide)(PLLA). PLLA microspheres with suitable particle sizes for the SLS process were produced by theoil-in-water emulsion solvent evaporation technique. A miniature build platform was designed,fabricated and incorporated in an existing Sinterstation® 2000 system to enable small quantities ofpolymer powder to be used for the production of 3D porous scaffolds. Trial runs were first performedusing the DuraForm™ polyamide powder and interfacing problems between the miniature buildplatform and the existing machine were solved. Then 3D porous scaffolds were successfully builtfrom the PLLA microspheres using the modified SLS machine. This study paved the way for furthercomprehensive studies on selective laser sintering of tissue engineering scaffolds using expensivebiopolymers and their composites
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 12
    Digitale Medien
    Digitale Medien
    s.l. ; Stafa-Zurich, Switzerland
    Journal of biomimetics, biomaterials, and tissue engineering Vol. 1 (July 2008), p. 91-97 
    ISSN: 1662-100X
    Quelle: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Thema: Biologie , Technik allgemein
    Notizen: NiTi shape memory alloys are a group of materials which have a lot of applicationsespecially in aerospace industries and medical equipments because of their excellent properties.Shape memory effect (SME), pseudo-elasticity (PE), high corrosion resistance and biocompatibilityis special properties of these alloys which lead to their extensive applications. The superior behaviorof NiTi alloy is due to thermoelastic martensitic phase transformation. In the present paper, two NiTishape memory alloys were prepared by non-consumable vacuum arc melting technique in copperwater cooled crucible. One of them had commercial elements and the other had high purity elements.Metallographic investigation, chemical analysis, XRD and DSC were carried out on two alloys.Metallographic observation and XRD shows that structure at ambient temperature consists ofaustenite phase besides Ti2Ni, Ni3Ti intermetallic compounds and martensite phase. Transformationinvestigation determines that the impurity such as iron in commercial alloy causes two stage phasetransformation B2→R→B19′
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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